Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL224C
Length:
649
Number of sequences:
5887
Description:
YDL224C WHI4 SGDID:S000002383, Chr IV from 56346-54397, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative RNA binding protein and partially redundant Whi3p homolog that regulates the cell size requirement for passage through Start and commitment to cell division"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
121Q64LC9    357   RBM4B_RAT RNA-binding protein 4B OS=Rattus no...192.7     34.7     68     89GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
122Q8VE92    357   RBM4B_MOUSE RNA-binding protein 4B OS=Mus mus...192.7     34.7     68     89GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032922; P:circadian regulation of gene expression; IDA:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0010628; P:positive regulation of gene expression; IDA:MGI.::GO:0006417; P:regulation of translation; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
123Q13247    344   SRSF6_HUMAN Serine/arginine-rich splicing fac...712.7     34.7     32     51GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
124Q06AT9    359   RBM4B_PIG RNA-binding protein 4B OS=Sus scrof...192.8     34.7     68     89GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
125Q3B7L6    345   SRSF6_BOVIN Serine/arginine-rich splicing fac...712.9     34.3     32     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
126P90727    488   U2AF2_CAEBR Splicing factor U2AF 65 kDa subun...733     34.7     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
127P32588    453   PUB1_YEAST Nuclear and cytoplasmic polyadenyl...963     34.7     30     43GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; IDA:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:SGD.::GO:0043488; P:regulation of mRNA stability; IMP:SGD.::GO:0034063; P:stress granule assembly; IMP:SGD.
128P90978    496   U2AF2_CAEEL Splicing factor U2AF 65 kDa subun...733.1     34.7     29     49GO:0005681; C:spliceosomal complex; ISS:WormBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:WormBase.
GO:0048589; P:developmental growth; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0010172; P:embryonic body morphogenesis; IMP:WormBase.::GO:0040022; P:feminization of hermaphroditic germ-line; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase.
129P19338    710   NUCL_HUMAN Nucleolin OS=Homo sapiens (Human)....903.2     34.7     29     47GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0042162; F:telomeric DNA binding; IDA:UniProtKB.
GO:0001525; P:angiogenesis; IDA:UniProtKB.
130Q5RF26    712   NUCL_PONAB Nucleolin OS=Pongo abelii (Sumatra...903.2     34.7     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
131Q8VIJ6    699   SFPQ_MOUSE Splicing factor, proline- and glut...913.2     34.7     37     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
132Q4R4J7    711   NUCL_MACFA Nucleolin OS=Macaca fascicularis (...903.3     34.7     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
133P13383    713   NUCL_RAT Nucleolin OS=Rattus norvegicus (Rat)...903.3     34.7     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
134P08199    714   NUCL_MESAU Nucleolin OS=Mesocricetus auratus ...903.3     34.7     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
135P23246    707   SFPQ_HUMAN Splicing factor, proline- and glut...913.4     34.7     37     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IDA:BHF-UCL.::GO:0042382; C:paraspeckles; IDA:BHF-UCL.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:BHF-UCL.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
136A8NS61    287   EIF3G_BRUMA Eukaryotic translation initiation...893.7     33.9     30     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
137Q6VY05    352   DND1_MOUSE Dead end protein homolog 1 OS=Mus ...924.2     33.9     32     41GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0007281; P:germ cell development; IMP:MGI.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0060965; P:negative regulation of gene silencing by miRNA; ISS:UniProtKB.
138B5G279    168   NCBP2_TAEGU Nuclear cap-binding protein subun...744.5     33.1     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
139Q5ZKR5    168   NCBP2_CHICK Nuclear cap-binding protein subun...744.5     33.1     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
140Q86U06    439   RBM23_HUMAN Probable RNA-binding protein 23 O...715     33.9     35     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:InterPro.
141O64380    660   PABP3_ARATH Polyadenylate-binding protein 3 O...376.1     33.9     43     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IGI:TAIR.
142Q177H0    159   NCBP2_AEDAE Nuclear cap-binding protein subun...746.1     32.7     31     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
143P27476    414   NSR1_YEAST Nuclear localization sequence-bind...756.2     33.5     27     51GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005730; C:nucleolus; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0000028; P:ribosomal small subunit assembly; TAS:SGD.::GO:0006364; P:rRNA processing; TAS:SGD.
144Q9SX80    434   R47CP_ARATH Polyadenylate-binding protein RBP...736.7     33.5     32     51GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
145P15771    694   NUCL_CHICK Nucleolin OS=Gallus gallus (Chicke...576.9     33.5     32     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
146Q1LZD9    520   PSPC1_BOVIN Paraspeckle component 1 OS=Bos ta...1277.1     33.5     27     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
147Q8LPQ9    901   FPA_ARATH Flowering time control protein FPA ...1037.2     33.5     31     46GO:0000785; C:chromatin; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031048; P:chromatin silencing by small RNA; IMP:TAIR.::GO:0009790; P:embryo development; IGI:TAIR.::GO:0009553; P:embryo sac development; IGI:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0009911; P:positive regulation of flower development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
148Q4PC17    858   MRD1_USTMA Multiple RNA-binding domain-contai...717.5     33.5     30     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
149P08579    225   RU2B_HUMAN U2 small nuclear ribonucleoprotein...768.1     32.7     30     42GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005686; C:U2 snRNP; TAS:ProtInc.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
150Q7QCB6    163   NCBP2_ANOGA Nuclear cap-binding protein subun...748.4     32.3     32     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
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