Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL213C
Length:
225
Number of sequences:
5887
Description:
YDL213C NOP6 SGDID:S000002372, Chr IV from 77966-77289, Genome Release 64-1-1, reverse complement, Verified ORF, "rRNA-binding protein required for 40S ribosomal subunit biogenesis; contains an RNA recognition motif (RRM) and has similarity to hydrophilins; NOP6 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31A5I1T3    309   RSMH_CLOBH Ribosomal RNA small subunit methyl...415.5     31.6     41     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
32A7FTX8    309   RSMH_CLOB1 Ribosomal RNA small subunit methyl...415.5     31.6     41     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
33B1IKR0    309   RSMH_CLOBK Ribosomal RNA small subunit methyl...415.6     31.6     41     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
34C3KV90    309   RSMH_CLOB6 Ribosomal RNA small subunit methyl...415.6     31.6     41     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
35P15771    694   NUCL_CHICK Nucleolin OS=Gallus gallus (Chicke...435.8     31.6     35     65GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
36P20397    651   NUCL_XENLA Nucleolin OS=Xenopus laevis (Afric...435.9     31.6     40     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
37Q10MR0    232   RU2B_ORYSJ U2 small nuclear ribonucleoprotein...1006.2     31.2     30     53GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
38Q8VIJ6    699   SFPQ_MOUSE Splicing factor, proline- and glut...466.7     31.6     35     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
39B2V4W0    310   RSMH_CLOBA Ribosomal RNA small subunit methyl...538.7     30.8     38     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
40B2TS30    310   RSMH_CLOBB Ribosomal RNA small subunit methyl...539.1     30.8     38     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
41Q18409    179   RSP6_CAEEL Probable splicing factor, arginine...589.9     30.4     36     50GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0008406; P:gonad development; IGI:UniProtKB.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0048477; P:oogenesis; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040026; P:positive regulation of vulval development; IMP:WormBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:WormBase.::GO:0031554; P:regulation of transcription termination, DNA-dependent; IGI:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.
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