rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | Q07623 | 225 | NOP6_YEAST Nucleolar protein 6 OS=Saccharomyc... | 225 | 1e-158 | 446 | 100 | 100 | GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019843; F:rRNA binding; IDA:SGD. | | | | | | | | | | GO:0042274; P:ribosomal small subunit biogenesis; IGI:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 2 | Q9Y7Y3 | 233 | YGR4_SCHPO Uncharacterized RNA-binding protei... | 176 | 9e-22 | 94.4 | 36 | 55 | GO:0005730; C:nucleolus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0042254; P:ribosome biogenesis; ISS:PomBase. | 3 | O14327 | 166 | PAB2_SCHPO Polyadenylate-binding protein 2 OS... | 78 | 0.081 | 36.6 | 29 | 53 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:PomBase.::GO:0005515; F:protein binding; IPI:PomBase. | | | | | | | | | | GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:PomBase. | 4 | A7TQR2 | 333 | RRT5_VANPO Regulator of rDNA transcription pr... | 43 | 0.15 | 36.2 | 40 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 5 | O22922 | 232 | RU2B1_ARATH U2 small nuclear ribonucleoprotei... | 104 | 0.48 | 34.7 | 30 | 49 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000354; P:cis assembly of pre-catalytic spliceosome; TAS:TAIR. | 6 | Q8R326 | 523 | PSPC1_MOUSE Paraspeckle component 1 OS=Mus mu... | 83 | 0.57 | 34.7 | 24 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0042382; C:paraspeckles; IDA:MGI. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 7 | Q4KLH4 | 522 | PSPC1_RAT Paraspeckle component 1 OS=Rattus n... | 83 | 0.58 | 34.7 | 24 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 8 | Q8WXF1 | 523 | PSPC1_HUMAN Paraspeckle component 1 OS=Homo s... | 83 | 0.58 | 34.7 | 24 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:HPA. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 9 | Q5ZK88 | 523 | PSPC1_CHICK Paraspeckle component 1 OS=Gallus... | 80 | 0.72 | 34.3 | 24 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 10 | Q1LZD9 | 520 | PSPC1_BOVIN Paraspeckle component 1 OS=Bos ta... | 83 | 0.84 | 34.3 | 24 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 11 | B8AM21 | 232 | RU2B_ORYSI U2 small nuclear ribonucleoprotein... | 95 | 0.89 | 33.9 | 31 | 55 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 12 | Q09702 | 529 | NRD1_SCHPO Negative regulator of differentiat... | 77 | 1.1 | 33.9 | 32 | 49 | GO:0005829; C:cytosol; IDA:PomBase. | | | | | | | | | | GO:0003729; F:mRNA binding; TAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0031138; P:negative regulation of conjugation with cellular fusion; IGI:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 13 | O22315 | 303 | SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=A... | 81 | 1.1 | 33.5 | 33 | 47 | GO:0035061; C:interchromatin granule; IDA:TAIR.::GO:0016607; C:nuclear speck; IDA:TAIR. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 14 | P40561 | 250 | SGN1_YEAST RNA-binding protein SGN1 OS=Saccha... | 78 | 1.7 | 33.1 | 32 | 53 | GO:0005737; C:cytoplasm; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0016071; P:mRNA metabolic process; IGI:SGD. | 15 | A5IYG2 | 300 | RSMH_MYCAP Ribosomal RNA small subunit methyl... | 50 | 1.7 | 33.1 | 40 | 64 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 16 | Q9WUK2 | 248 | IF4H_MOUSE Eukaryotic translation initiation ... | 84 | 1.8 | 32.7 | 26 | 45 | GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 17 | Q00916 | 300 | RU17_YEAST U1 small nuclear ribonucleoprotein... | 47 | 1.8 | 33.1 | 38 | 57 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0030619; F:U1 snRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 18 | Q5XI72 | 248 | IF4H_RAT Eukaryotic translation initiation fa... | 84 | 1.8 | 32.7 | 26 | 45 | GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 19 | Q15056 | 248 | IF4H_HUMAN Eukaryotic translation initiation ... | 84 | 2.1 | 32.7 | 26 | 45 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0016281; C:eukaryotic translation initiation factor 4F complex; TAS:ProtInc.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003743; F:translation initiation factor activity; TAS:ProtInc. | | | | | | | | | | GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006446; P:regulation of translational initiation; TAS:ProtInc. | 20 | Q9SX33 | 1200 | ALA9_ARATH Putative phospholipid-transporting... | 116 | 2.6 | 32.7 | 26 | 41 | GO:0016021; C:integral to membrane; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0015662; F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; IEA:InterPro.::GO:0000287; F:magnesium ion binding; IEA:InterPro.::GO:0004012; F:phospholipid-translocating ATPase activity; IEA:EC. | | | | | | | | | | GO:0006812; P:cation transport; IEA:InterPro. | 21 | Q09295 | 191 | YQO4_CAEEL Putative RNA-binding protein EEED8... | 78 | 2.9 | 32 | 28 | 50 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 22 | A8F866 | 858 | SYA_THELT Alanine--tRNA ligase OS=Thermotoga ... | 97 | 2.9 | 32.7 | 29 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0004813; F:alanine-tRNA ligase activity; IEA:EC.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006419; P:alanyl-tRNA aminoacylation; IEA:InterPro. | 23 | Q09301 | 197 | YQOC_CAEEL Putative RNA-binding protein EEED8... | 78 | 3 | 32 | 28 | 50 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 24 | Q5RBR8 | 228 | IF4H_PONAB Eukaryotic translation initiation ... | 84 | 3.1 | 32 | 26 | 45 | GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 25 | Q1JPH6 | 228 | IF4H_BOVIN Eukaryotic translation initiation ... | 84 | 3.2 | 32 | 26 | 45 | GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 26 | Q08925 | 612 | MRN1_YEAST RNA-binding protein MRN1 OS=Saccha... | 45 | 3.6 | 32.3 | 36 | 58 | GO:0005737; C:cytoplasm; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 27 | P23246 | 707 | SFPQ_HUMAN Splicing factor, proline- and glut... | 88 | 4.7 | 32 | 25 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IDA:BHF-UCL.::GO:0042382; C:paraspeckles; IDA:BHF-UCL. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:BHF-UCL.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 28 | B1L164 | 309 | RSMH_CLOBM Ribosomal RNA small subunit methyl... | 41 | 4.8 | 31.6 | 41 | 68 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 29 | A7GDE2 | 309 | RSMH_CLOBL Ribosomal RNA small subunit methyl... | 41 | 5.3 | 31.6 | 41 | 68 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 30 | C1FME6 | 309 | RSMH_CLOBJ Ribosomal RNA small subunit methyl... | 41 | 5.3 | 31.6 | 41 | 68 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 31 | A5I1T3 | 309 | RSMH_CLOBH Ribosomal RNA small subunit methyl... | 41 | 5.5 | 31.6 | 41 | 68 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. |