UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YDL209C

Length:

339

Number of sequences:

5887

Description:

YDL209C CWC2 SGDID:S000002368, Chr IV from 87226-86207, Genome Release 64-1-1, reverse complement, Verified ORF, "Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; binds directly to U6 snRNA; similar to S. pombe Cwf2"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
31	Q6NZZ9	425	RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS...	174	0.001	43.9	24	36	GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0017069; F:snRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0009790; P:embryo development; IMP:ZFIN.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:UniProtKB.::GO:0033120; P:positive regulation of RNA splicing; ISS:UniProtKB.
32	P32831	672	NGR1_YEAST Negative growth regulatory protein...	66	0.001	44.3	35	53	GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0048471; C:perinuclear region of cytoplasm; IDA:SGD.
									GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.
									GO:0061158; P:3'-UTR-mediated mRNA destabilization; IDA:SGD.::GO:0007005; P:mitochondrion organization; IMP:SGD.
33	Q0WW84	435	RB47B_ARATH Polyadenylate-binding protein RBP...	71	0.002	43.1	32	55	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
34	P0CR50	326	SLT11_CRYNJ Pre-mRNA-splicing factor SLT11 OS...	121	0.003	42.7	26	45	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
35	P0CR51	326	SLT11_CRYNB Pre-mRNA-splicing factor SLT11 OS...	121	0.003	42.7	26	45	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
36	Q93W34	415	RP45C_ARATH Polyadenylate-binding protein RBP...	87	0.003	42.7	28	46	GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
37	Q9SX80	434	R47CP_ARATH Polyadenylate-binding protein RBP...	71	0.006	42	32	52	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
38	Q08925	612	MRN1_YEAST RNA-binding protein MRN1 OS=Saccha...	61	0.008	41.6	31	57	GO:0005737; C:cytoplasm; IDA:SGD.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
39	Q3SZM1	296	MK67I_BOVIN MKI67 FHA domain-interacting nucl...	64	0.011	40.8	36	52	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
40	Q9SX79	432	RB47C_ARATH Polyadenylate-binding protein RBP...	71	0.012	40.8	31	52	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
41	Q9FPJ8	387	RB45A_ARATH Polyadenylate-binding protein RBP...	71	0.015	40.4	28	51	GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
42	Q8LPQ9	901	FPA_ARATH Flowering time control protein FPA ...	54	0.017	40.8	37	52	GO:0000785; C:chromatin; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031048; P:chromatin silencing by small RNA; IMP:TAIR.::GO:0009790; P:embryo development; IGI:TAIR.::GO:0009553; P:embryo sac development; IGI:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0009911; P:positive regulation of flower development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
43	Q9ZUM0	669	C3H17_ARATH Zinc finger CCCH domain-containin...	53	0.043	39.3	36	47
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
44	O14102	335	SAP49_SCHPO Spliceosome-associated protein 49...	142	0.058	38.5	27	42	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; TAS:PomBase.
45	O60176	473	YG41_SCHPO Uncharacterized RNA-binding protei...	62	0.064	38.5	31	53	GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0071004; C:U2-type prespliceosome; ISS:PomBase.
									GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
									GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:PomBase.
46	F4I3B3	445	RB47A_ARATH Polyadenylate-binding protein RBP...	81	0.08	38.5	33	51	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
47	Q9LEB3	428	RBP47_NICPL Polyadenylate-binding protein RBP...	71	0.11	37.7	25	55	GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
									GO:0034605; P:cellular response to heat; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
48	Q4PGU6	324	SLT11_USTMA Pre-mRNA-splicing factor SLT11 OS...	137	0.17	37	26	42	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
49	Q6P158	1386	DHX57_HUMAN Putative ATP-dependent RNA helica...	41	0.31	36.6	32	54
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
50	Q05AT9	272	U1SBP_XENLA U11/U12 small nuclear ribonucleop...	61	0.48	35.4	36	52	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
51	Q4KMD3	208	U1SBP_DANRE U11/U12 small nuclear ribonucleop...	46	0.6	35	41	50	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
52	Q7JWR9	404	ZC3HF_DROME Zinc finger CCCH domain-containin...	54	0.61	35.4	26	48
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
53	O95628	575	CNOT4_HUMAN CCR4-NOT transcription complex su...	37	0.75	35.4	41	54	GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0051865; P:protein autoubiquitination; IDA:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
54	Q8BT14	575	CNOT4_MOUSE CCR4-NOT transcription complex su...	37	0.79	35.4	41	54	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0051865; P:protein autoubiquitination; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
55	Q8VXZ9	425	R47BP_ARATH Polyadenylate-binding protein RBP...	48	0.85	35	31	60	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
56	O13759	632	CSX1_SCHPO RNA-binding post-transcriptional r...	66	0.87	35	32	47	GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.
									GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
									GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:PomBase.::GO:2000815; P:regulation of mRNA stability involved in response to oxidative stress; IMP:PomBase.
57	Q93618	374	ZC3HF_CAEEL Zinc finger CCCH domain-containin...	34	1.4	34.3	35	56
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
58	A8WMM4	374	ZC3HF_CAEBR Zinc finger CCCH domain-containin...	34	1.4	34.3	35	56
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
59	Q28Y69	406	ZC3HF_DROPS Zinc finger CCCH domain-containin...	54	1.5	34.3	26	50
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
60	Q6P5D3	1388	DHX57_MOUSE Putative ATP-dependent RNA helica...	29	1.6	34.7	41	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
61	B2GIN9	469	PAFA_KOCRD Pup--protein ligase OS=DC2201). GN...	42	2.3	33.9	38	52
									GO:0016881; F:acid-amino acid ligase activity; IEA:EC.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
									GO:0019941; P:modification-dependent protein catabolic process; IEA:InterPro.::GO:0010498; P:proteasomal protein catabolic process; IEA:InterPro.

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