Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL175C
Length:
344
Number of sequences:
5887
Description:
YDL175C AIR2 SGDID:S000002334, Chr IV from 145518-144484, Genome Release 64-1-1, reverse complement, Verified ORF, "Zinc knuckle protein, involved in nuclear RNA processing and degredation as a component of the TRAMP complex; stimulates the poly(A) polymerase activity of Pap2p in vitro; functionally redundant with Air1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12476    344   AIR2_YEAST Protein AIR2 OS=Saccharomyces cere...3440     714     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0031499; C:TRAMP complex; IDA:SGD.
GO:0030674; F:protein binding, bridging; IMP:SGD.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043629; P:ncRNA polyadenylation; IDA:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IGI:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IGI:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IGI:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IGI:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0006400; P:tRNA modification; IMP:SGD.
2P40507    360   AIR1_YEAST Protein AIR1 OS=Saccharomyces cere...3196e-98     301     50     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0031499; C:TRAMP complex; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043629; P:ncRNA polyadenylation; IDA:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IGI:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IGI:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IGI:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IGI:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.
3Q9P795    313   AIR1_SCHPO Protein air1 OS=Schizosaccharomyce...1606e-26     109     38     51GO:0005730; C:nucleolus; ISS:PomBase.::GO:0031499; C:TRAMP complex; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043630; P:ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process; ISS:PomBase.::GO:0016075; P:rRNA catabolic process; ISS:PomBase.::GO:0016077; P:snoRNA catabolic process; ISS:PomBase.::GO:0016076; P:snRNA catabolic process; ISS:PomBase.::GO:0016078; P:tRNA catabolic process; ISS:PomBase.
4A1L2T6    563   ZCHC7_XENLA Zinc finger CCHC domain-containin...1790.000000000002     71.2     34     44
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
5B1AX39    541   ZCHC7_MOUSE Zinc finger CCHC domain-containin...1430.0000000005     64.3     30     40
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
6B1WC15    542   ZCHC7_RAT Zinc finger CCHC domain-containing ...1430.0000000006     63.9     30     40
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
7Q2KIN0    546   ZCHC7_BOVIN Zinc finger CCHC domain-containin...1250.000000006     60.8     31     41
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
8Q8N3Z6    543   ZCHC7_HUMAN Zinc finger CCHC domain-containin...1300.00000001     59.7     34     41GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9Q04832    271   HEXP_LEIMA DNA-binding protein HEXBP OS=Leish...1581.5     33.9     23     30GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10O76743    1156   GLH4_CAEEL ATP-dependent RNA helicase glh-4 O...1010.027     40     30     41GO:0043186; C:P granule; IDA:WormBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0008432; F:JUN kinase binding; IPI:WormBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007276; P:gamete generation; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.
11Q8R1J3    273   ZCHC9_MOUSE Zinc finger CCHC domain-containin...1080.0005     45.1     31     43
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
12Q8N567    271   ZCHC9_HUMAN Zinc finger CCHC domain-containin...1090.003     42.4     30     41
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; IDA:UniProtKB.
13Q9NUD5    404   ZCHC3_HUMAN Zinc finger CCHC domain-containin...530.004     42.4     38     49
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
14P63128    1117   POK4_HUMAN HERV-K_6q14.1 provirus ancestral G...760.009     41.6     32     46GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:InterPro.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:EC.::GO:0004523; F:ribonuclease H activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046080; P:dUTP metabolic process; IEA:InterPro.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006278; P:RNA-dependent DNA replication; IEA:InterPro.::GO:0016032; P:viral reproduction; IEA:InterPro.
15P53849    153   GIS2_YEAST Zinc finger protein GIS2 OS=Saccha...504.5     32     42     56GO:0042788; C:polysomal ribosome; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.::GO:0045182; F:translation regulator activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045727; P:positive regulation of translation; IDA:SGD.
16Q4WXV6    566   BBP_ASPFU Branchpoint-bridging protein OS=A11...890.015     40.8     38     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17O42395    172   CNBP_CHICK Cellular nucleic acid-binding prot...1335.9     31.6     27     34GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18P63126    666   GAK4_HUMAN HERV-K_6q14.1 provirus ancestral G...1000.018     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
19P62683    666   GAK1_HUMAN HERV-K_12q14.1 provirus ancestral ...1000.019     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
20Q9YNA8    666   GAK3_HUMAN HERV-K_19q12 provirus ancestral Ga...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
21P63145    666   GAK11_HUMAN HERV-K_22q11.21 provirus ancestra...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
22Q9HDB9    667   GAK8_HUMAN HERV-K_3q12.3 provirus ancestral G...1040.021     40.4     32     42GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
23P62684    666   GAK5_HUMAN HERV-K_19p13.11 provirus ancestral...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
24P87889    666   GAK10_HUMAN HERV-K_5q33.3 provirus ancestral ...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; NAS:UniProtKB.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
25Q7LDI9    666   GAK2_HUMAN HERV-K_7p22.1 provirus ancestral G...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
26P63130    666   GAK12_HUMAN HERV-K_1q22 provirus ancestral Ga...1000.021     40.4     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
27Q8NIW7    607   BBP_NEUCR Branchpoint-bridging protein OS=125...890.022     40.4     37     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28P53996    178   CNBP_MOUSE Cellular nucleic acid-binding prot...1100.024     38.9     31     43GO:0005829; C:cytosol; IDA:MGI.::GO:0005783; C:endoplasmic reticulum; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008284; P:positive regulation of cell proliferation; IDA:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
29P62685    647   GAK6_HUMAN HERV-K_8p23.1 provirus ancestral G...1000.025     40     30     41GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0019028; C:viral capsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016032; P:viral reproduction; IEA:InterPro.
30P62634    177   CNBP_RAT Cellular nucleic acid-binding protei...970.027     38.9     33     44GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005783; C:endoplasmic reticulum; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003697; F:single-stranded DNA binding; IDA:RGD.::GO:0003727; F:single-stranded RNA binding; IDA:RGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008284; P:positive regulation of cell proliferation; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
31Q5R5R5    177   CNBP_PONAB Cellular nucleic acid-binding prot...970.027     38.9     33     44GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005783; C:endoplasmic reticulum; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008284; P:positive regulation of cell proliferation; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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