Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL140C
Length:
1733
Number of sequences:
5887
Description:
YDL140C RPO21 SGDID:S000002299, Chr IV from 210561-205360, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
931Q06H06    681   RPOC1_DRIGR DNA-directed RNA polymerase subun...3094e-31     135     32     47GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
932P33053    1286   RP147_VAR67 DNA-directed RNA polymerase 147 k...1040.000002     56.6     28     52GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
933Q1KVT3    1529   RPOC1_SCEOB DNA-directed RNA polymerase subun...3226e-31     137     31     48GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
934P23580    586   RPOC1_EUGGR DNA-directed RNA polymerase subun...3299e-31     133     29     48GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
935P58131    575   RPOC1_ASTLO DNA-directed RNA polymerase subun...3391e-30     133     28     49GO:0009536; C:plastid; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
936P56300    836   RPOC1_CHLVU DNA-directed RNA polymerase subun...3301e-30     135     31     47GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
937A6MMT5    689   RPOC1_ILLOL DNA-directed RNA polymerase subun...3092e-30     133     32     47GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
938Q03586    508   RPOA2_THEAC DNA-directed RNA polymerase subun...1291e-18     95.5     40     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
939Q979F5    508   RPOA2_THEVO DNA-directed RNA polymerase subun...1081e-16     89     41     62
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
940Q8HUH0    489   RPC2B_CHLRE DNA-directed RNA polymerase subun...2472e-27     122     34     51GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
941Q2EEW9    834   RPOC1_HELSJ DNA-directed RNA polymerase subun...3691e-20     102     26     43GO:0009536; C:plastid; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
942Q8R0T2    568   ZN768_MOUSE Zinc finger protein 768 OS=Mus mu...1131e-16     89.4     42     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
943P21422    575   RPOC1_PLAF7 DNA-directed RNA polymerase subun...3380.00000000000002     82     25     44GO:0020011; C:apicoplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
944Q9H5H4    540   ZN768_HUMAN Zinc finger protein 768 OS=Homo s...900.000000000002     75.5     43     51GO:0005665; C:DNA-directed RNA polymerase II, core complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
945O01761    8081   UNC89_CAEEL Muscle M-line assembly protein un...1000.093     41.6     33     39GO:0005887; C:integral to plasma membrane; IEA:InterPro.::GO:0031430; C:M band; IDA:WormBase.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0019902; F:phosphatase binding; IPI:WormBase.::GO:0005543; F:phospholipid binding; IEA:InterPro.::GO:0017048; F:Rho GTPase binding; IPI:WormBase.::GO:0005089; F:Rho guanyl-nucleotide exchange factor activity; IDA:WormBase.::GO:0005021; F:vascular endothelial growth factor-activated receptor activity; IEA:InterPro.
GO:0040011; P:locomotion; IMP:WormBase.::GO:0035023; P:regulation of Rho protein signal transduction; IEA:InterPro.::GO:0030241; P:skeletal muscle myosin thick filament assembly; IMP:WormBase.::GO:0048010; P:vascular endothelial growth factor receptor signaling pathway; IEA:InterPro.
946Q9Y493    2812   ZAN_HUMAN Zonadhesin OS=Homo sapiens (Human)....1940.12     41.2     28     37GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; NAS:UniProtKB.
GO:0007339; P:binding of sperm to zona pellucida; NAS:UniProtKB.::GO:0016337; P:cell-cell adhesion; NAS:UniProtKB.
947Q21338    1208   SPT5H_CAEEL Transcription elongation factor S...1710.0007     48.5     28     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
948Q5MZ21    1318   RPOC2_SYNP6 DNA-directed RNA polymerase subun...1330.002     47.4     29     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
949Q31N15    1318   RPOC2_SYNE7 DNA-directed RNA polymerase subun...1330.002     47     29     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
950P23581    830   RPOC2_EUGGR DNA-directed RNA polymerase subun...690.21     40     32     55GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
951Q7VA30    1367   RPOC2_PROMA DNA-directed RNA polymerase subun...1930.007     45.1     25     42
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
952Q1XDN7    1226   RPOC2_PORYE DNA-directed RNA polymerase subun...400.0007     48.5     53     73GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
953Q20EX3    1859   RPOC2_OLTVI DNA-directed RNA polymerase subun...490.006     45.4     49     57GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
954P73334    1317   RPOC2_SYNY3 DNA-directed RNA polymerase subun...1380.013     44.3     28     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
955A2C4N0    1369   RPOC2_PROM1 DNA-directed RNA polymerase subun...1400.015     43.9     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
956Q46J24    1369   RPOC2_PROMT DNA-directed RNA polymerase subun...1400.016     43.9     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
957Q3AHX7    1362   RPOC2_SYNSC DNA-directed RNA polymerase subun...1320.015     43.9     27     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
958A5GVF0    1368   RPOC2_SYNR3 DNA-directed RNA polymerase subun...1980.00009     51.2     26     42
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
959Q7U8K2    1364   RPOC2_SYNPX DNA-directed RNA polymerase subun...1320.015     43.9     27     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
960Q7V5P3    1374   RPOC2_PROMM DNA-directed RNA polymerase subun...1320.017     43.9     27     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
961B1X3M8    1372   RPOC2_PAUCH DNA-directed RNA polymerase subun...1750.001     47.8     27     43GO:0070111; C:organellar chromatophore; IEA:UniProtKB-SubCell.::GO:0009536; C:plastid; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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