Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL140C
Length:
1733
Number of sequences:
5887
Description:
YDL140C RPO21 SGDID:S000002299, Chr IV from 210561-205360, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
601Q7VKL8    1420   RPOC_HAEDU DNA-directed RNA polymerase subuni...981.3     37.7     26     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
602B3ETY9    1433   RPOC_AMOA5 DNA-directed RNA polymerase subuni...690.12     41.2     36     54
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
603Q8F0S3    1404   RPOC_LEPIN DNA-directed RNA polymerase subuni...340.00007     51.6     65     76
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
604Q72UA7    1404   RPOC_LEPIC DNA-directed RNA polymerase subuni...340.00007     51.6     65     76
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
605P37871    1199   RPOC_BACSU DNA-directed RNA polymerase subuni...1730.01     44.7     24     38
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW.
606A7Z0N0    1199   RPOC_BACA2 DNA-directed RNA polymerase subuni...1760.009     44.7     23     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
607Q2S1Q6    1448   RPOC_SALRD DNA-directed RNA polymerase subuni...270.026     43.1     67     81
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
608Q8PC55    1405   RPOC_XANCP DNA-directed RNA polymerase subuni...1440.0002     50.4     26     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
609Q4URD3    1405   RPOC_XANC8 DNA-directed RNA polymerase subuni...1440.0002     50.4     26     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
610B0BSF6    1423   RPOC_ACTPJ DNA-directed RNA polymerase subuni...1440.003     46.6     24     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
611Q5WLR9    1206   RPOC_BACSK DNA-directed RNA polymerase subuni...1710.004     45.8     23     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
612B0RU88    1405   RPOC_XANCB DNA-directed RNA polymerase subuni...1440.0002     50.4     26     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
613A3N326    1412   RPOC_ACTP2 DNA-directed RNA polymerase subuni...1440.003     46.6     24     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
614B3GYV5    1423   RPOC_ACTP7 DNA-directed RNA polymerase subuni...1440.003     46.2     24     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
615B2GDX6    1215   RPOC_LACF3 DNA-directed RNA polymerase subuni...430.73     38.5     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
616Q7NDF8    608   RPOC1_GLOVI DNA-directed RNA polymerase subun...3288e-43     171     33     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
617Q9Z9M1    1206   RPOC_BACHD DNA-directed RNA polymerase subuni...430.087     41.6     42     63
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
618B5RRJ6    1377   RPOC_BORRA DNA-directed RNA polymerase subuni...330.0001     50.8     64     79
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
619Q39Y12    1392   RPOC_GEOMG DNA-directed RNA polymerase subuni...1440.001     47.8     26     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
620B5RLU8    1377   RPOC_BORDL DNA-directed RNA polymerase subuni...330.0001     50.8     64     79
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
621Q9TL05    863   RPOC1_NEPOL DNA-directed RNA polymerase subun...4061e-42     173     31     45GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
622Q3J5S9    1415   RPOC_RHOS4 DNA-directed RNA polymerase subuni...1450.004     45.8     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
623A3PGJ0    1415   RPOC_RHOS1 DNA-directed RNA polymerase subuni...1450.004     45.8     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
624Q5D869    1976   NRPE1_ARATH DNA-directed RNA polymerase E sub...8442e-42     174     26     42GO:0000418; C:DNA-directed RNA polymerase IV complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IDA:UniProtKB.::GO:0016604; C:nuclear body; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.
GO:0005507; F:copper ion binding; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0048038; F:quinone binding; IEA:InterPro.
GO:0009308; P:amine metabolic process; IEA:InterPro.::GO:0006306; P:DNA methylation; IMP:TAIR.::GO:0030422; P:production of siRNA involved in RNA interference; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
625Q20EX2    1021   RPOC1_OLTVI DNA-directed RNA polymerase subun...3202e-42     173     34     51GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
626B8HTV9    622   RPOC1_CYAP4 DNA-directed RNA polymerase subun...5613e-42     170     27     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
627Q8ETY7    1203   RPOC_OCEIH DNA-directed RNA polymerase subuni...1690.0008     48.1     23     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
628B2S091    1377   RPOC_BORHD DNA-directed RNA polymerase subuni...330.00007     51.6     64     82
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
629Q04QJ0    1404   RPOC_LEPBJ DNA-directed RNA polymerase subuni...340.00007     51.6     65     76
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
630A7HNY1    1650   RPOC_FERNB DNA-directed RNA polymerase subuni...950.001     47.8     34     49
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
631P14563    621   RPOC1_NOSCO DNA-directed RNA polymerase subun...5498e-42     169     26     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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