Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL140C
Length:
1733
Number of sequences:
5887
Description:
YDL140C RPO21 SGDID:S000002299, Chr IV from 210561-205360, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
571Q6FZM0    1402   RPOC_BARQU DNA-directed RNA polymerase subuni...1450.0006     48.5     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
572C4LL70    1332   RPOC_CORK4 DNA-directed RNA polymerase subuni...860.16     40.4     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
573A1JII1    1406   RPOC_YERE8 DNA-directed RNA polymerase subuni...1440.001     47.8     24     38
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
574Q38UQ3    1214   RPOC_LACSS DNA-directed RNA polymerase subuni...430.55     38.9     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
575Q9YAU2    407   RPOA2_AERPE DNA-directed RNA polymerase subun...3922e-44     172     33     49
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
576A4VHM4    1399   RPOC_PSEU5 DNA-directed RNA polymerase subuni...1800.004     45.8     23     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
577O51349    1377   RPOC_BORBU DNA-directed RNA polymerase subuni...330.00007     51.6     64     82
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
578O33431    1159   RPOC_PORCN DNA-directed RNA polymerase subuni...350.000001     57.4     71     86
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
579A6KYK2    1428   RPOC_BACV8 DNA-directed RNA polymerase subuni...590.032     42.7     37     56
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
580Q65PB4    1199   RPOC_BACLD DNA-directed RNA polymerase subuni...1760.013     44.3     23     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
581A5U9X9    1416   RPOC_HAEIE DNA-directed RNA polymerase subuni...1960.001     47.4     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
582Q4QN34    1416   RPOC_HAEI8 DNA-directed RNA polymerase subuni...1440.002     47.4     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
583B7J1W0    1377   RPOC_BORBZ DNA-directed RNA polymerase subuni...330.00007     51.6     64     82
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
584P75271    1290   RPOC_MYCPN DNA-directed RNA polymerase subuni...650.46     39.3     35     55
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
585P43739    1415   RPOC_HAEIN DNA-directed RNA polymerase subuni...1440.002     47.4     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
586B0URZ7    1420   RPOC_HAES2 DNA-directed RNA polymerase subuni...1440.003     46.2     24     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
587A5UH19    1416   RPOC_HAEIG DNA-directed RNA polymerase subuni...1440.002     47.4     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
588Q0I5B8    1420   RPOC_HAES1 DNA-directed RNA polymerase subuni...1440.004     46.2     24     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
589A1TYJ1    1404   RPOC_MARAV DNA-directed RNA polymerase subuni...400.066     42     43     65
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
590Q58446    859   RPOA2_METJA DNA-directed RNA polymerase subun...490.0007     48.1     43     69
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
GO:0016539; P:intein-mediated protein splicing; IEA:InterPro.::GO:0006314; P:intron homing; IEA:UniProtKB-KW.
591B2G8Y5    1211   RPOC_LACRJ DNA-directed RNA polymerase subuni...430.61     38.5     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
592A5VLL3    1211   RPOC_LACRD DNA-directed RNA polymerase subuni...430.61     38.5     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
593B0UHX5    1400   RPOC_METS4 DNA-directed RNA polymerase subuni...1460.005     45.4     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
594Q7URW4    1429   RPOC_RHOBA DNA-directed RNA polymerase subuni...570.004     45.8     44     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
595Q88XZ2    1213   RPOC_LACPL DNA-directed RNA polymerase subuni...430.79     38.1     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
596P77882    1053   RPOC_LISGR DNA-directed RNA polymerase subuni...550.000000003     65.9     56     73
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
597Q6G3X4    1402   RPOC_BARHE DNA-directed RNA polymerase subuni...1450.0005     48.9     26     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
598P94892    1220   RPOC_LEUMM DNA-directed RNA polymerase subuni...430.67     38.5     42     60
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
599Q9KWU6    1524   RPOC_THEAQ DNA-directed RNA polymerase subuni...1060.094     41.2     25     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
600Q6LLW3    1404   RPOC_PHOPR DNA-directed RNA polymerase subuni...1011.4     37.4     25     47
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
601Q7VKL8    1420   RPOC_HAEDU DNA-directed RNA polymerase subuni...981.3     37.7     26     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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