Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL140C
Length:
1733
Number of sequences:
5887
Description:
YDL140C RPO21 SGDID:S000002299, Chr IV from 210561-205360, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
391P36252    1690   RPOC_THEMA DNA-directed RNA polymerase subuni...1101.5     37.4     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
392Q5UZR5    395   RPOA2_HALMA DNA-directed RNA polymerase subun...3981e-47     182     33     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
393Q8ZYQ7    379   RPOA2_PYRAE DNA-directed RNA polymerase subun...3931e-47     181     31     50
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
394Q3YST4    1410   RPOC_EHRCJ DNA-directed RNA polymerase subuni...1560.004     45.8     24     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
395B2RL44    1433   RPOC_PORG3 DNA-directed RNA polymerase subuni...750.061     42     35     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
396A6T3L2    1414   RPOC_JANMA DNA-directed RNA polymerase subuni...1830.002     47.4     26     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
397A9ADI6    1413   RPOC_BURM1 DNA-directed RNA polymerase subuni...1830.0007     48.5     26     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
398A0K3L8    1413   RPOC_BURCH DNA-directed RNA polymerase subuni...1460.0008     48.1     27     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
399B1JU15    1413   RPOC_BURCC DNA-directed RNA polymerase subuni...1460.0008     48.1     27     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
400Q1BRU1    1413   RPOC_BURCA DNA-directed RNA polymerase subuni...1460.0008     48.1     27     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
401B1XSP4    1420   RPOC_POLNS DNA-directed RNA polymerase subuni...400.017     43.9     48     65
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
402A0LII5    1351   RPOC_SYNFM DNA-directed RNA polymerase subuni...400.23     40     40     70
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
403B1LNU0    1407   RPOC_ECOSM DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
404Q1R5V4    1407   RPOC_ECOUT DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
405A1AIG0    1407   RPOC_ECOK1 DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
406Q3YUZ6    1407   RPOC_SHISS DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
407P0A8T9    1407   RPOC_SHIFL DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
408Q31U09    1407   RPOC_SHIBS DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
409P0A8T7    1407   RPOC_ECOLI DNA-directed RNA polymerase subuni...1440.002     46.6     25     41GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0016020; C:membrane; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
410B1IUQ9    1407   RPOC_ECOLC DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
411A8A787    1407   RPOC_ECOHS DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
412B1XBZ0    1407   RPOC_ECODH DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
413P0A8T8    1407   RPOC_ECO57 DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
414A7ZUK2    1407   RPOC_ECO24 DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
415B2TWH4    1407   RPOC_SHIB3 DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
416B2S2I9    1416   RPOC_TREPS DNA-directed RNA polymerase subuni...1440.0008     48.1     27     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
417O83270    1416   RPOC_TREPA DNA-directed RNA polymerase subuni...1440.0008     48.1     27     40
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
418A4SHV0    1434   RPOC_AERS4 DNA-directed RNA polymerase subuni...1520.0005     48.9     26     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
419B1L934    1690   RPOC_THESQ DNA-directed RNA polymerase subuni...1101.6     37.4     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
420Q0TA77    1407   RPOC_ECOL5 DNA-directed RNA polymerase subuni...1440.002     46.6     25     41
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
421Q9RH40    1372   RPOC_RICCN DNA-directed RNA polymerase subuni...370.00002     53.5     59     78
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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