UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YDL126C

Length:

835

Number of sequences:

5887

Description:

YDL126C CDC48 SGDID:S000002284, Chr IV from 238664-236157, Genome Release 64-1-1, reverse complement, Verified ORF, "ATPase involved in ubiquitin-mediated protein degradation; Cdc48p-Npl4p-Ufd1p complex participates in ER-associated degradation (ERAD) while Cdc48p-Npl4p-Vms1p complex participates in mitochondria-associated degradation (MAD); along with Npl4-Ufd1 complex, important for maintaining the cell wall integrity during heat stress to allow G1 progression"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
721	Q5E699	337	RUVB_VIBF1 Holliday junction ATP-dependent DN...	90	0.086	39.7	28	46
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
722	P63745	610	Y1826_MYCBO Uncharacterized protein Mb1826 OS...	115	0.27	38.5	26	43
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
723	P63744	610	ECCA5_MYCTU ESX-5 secretion system protein Ec...	115	0.27	38.5	26	43	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:MTBBASE.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
724	A5F760	334	RUVB_VIBC3 Holliday junction ATP-dependent DN...	34	0.11	39.3	50	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
725	Q045Q2	339	RUVB_LACGA Holliday junction ATP-dependent DN...	147	0.013	42.4	30	45
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
726	Q9ZDE5	342	RUVB_RICPR Holliday junction ATP-dependent DN...	283	0.0004	47	25	42
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
727	Q8RAN2	338	RUVB_THETN Holliday junction ATP-dependent DN...	67	0.078	39.7	36	51
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
728	Q09MB4	2282	YCF2_CITSI Protein ycf2 OS=Citrus sinensis (S...	246	0.0003	48.5	24	42	GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
729	Q15RN6	335	RUVB_PSEA6 Holliday junction ATP-dependent DN...	34	0.48	37.4	47	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
730	A0A379	2281	YCF2_COFAR Protein ycf2 OS=Coffea arabica (Ar...	249	0.39	38.1	22	38	GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
731	Q0G9F7	2292	YCF2_LIRTU Protein ycf2 OS=Liriodendron tulip...	246	0.0003	48.1	24	41	GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
732	Q6LT48	337	RUVB_PHOPR Holliday junction ATP-dependent DN...	34	0.5	37.4	47	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
733	A1K313	352	RUVB_AZOSB Holliday junction ATP-dependent DN...	34	0.069	40	53	59
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
734	A4QK61	2296	YCF2_ARAHI Protein ycf2 OS=Arabis hirsuta (Ha...	244	0.0004	48.1	23	40	GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
735	C0ZZ48	365	RUVB_RHOE4 Holliday junction ATP-dependent DN...	110	2.2	35.4	26	47
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
736	Q0RNU6	366	RUVB_FRAAA Holliday junction ATP-dependent DN...	76	0.67	37	36	47
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
737	C0R4X2	324	RUVB_WOLWR Holliday junction ATP-dependent DN...	34	0.02	41.6	53	68
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
738	P61539	326	RUVB_WOLPM Holliday junction ATP-dependent DN...	34	0.021	41.6	53	68
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
739	Q2Y6J1	425	CLPX_NITMU ATP-dependent Clp protease ATP-bin...	77	0.04	40.8	34	52
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006457; P:protein folding; IEA:InterPro.
740	B8EK46	348	RUVB_METSB Holliday junction ATP-dependent DN...	134	0.003	44.7	34	48
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
741	Q183N8	339	RUVB_CLOD6 Holliday junction ATP-dependent DN...	73	0.035	40.8	34	47
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
742	A1RSA2	329	RFCS1_PYRIL Replication factor C small subuni...	130	0.78	36.6	26	44	GO:0005663; C:DNA replication factor C complex; IEA:InterPro.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003689; F:DNA clamp loader activity; IEA:InterPro.
									GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
743	Q2GHE3	329	RUVB_EHRCR Holliday junction ATP-dependent DN...	139	0.014	42	32	46
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
744	Q8ZWS2	319	RFCS2_PYRAE Replication factor C small subuni...	271	0.99	36.2	25	41	GO:0005663; C:DNA replication factor C complex; IEA:InterPro.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003689; F:DNA clamp loader activity; IEA:InterPro.
									GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
745	B5XQ05	336	RUVB_KLEP3 Holliday junction ATP-dependent DN...	34	0.12	39.3	50	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
746	Q3YRD9	329	RUVB_EHRCJ Holliday junction ATP-dependent DN...	139	0.008	43.1	31	45
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
747	Q8ZYK4	329	RFCS1_PYRAE Replication factor C small subuni...	130	1.1	36.2	26	44	GO:0005663; C:DNA replication factor C complex; IEA:InterPro.
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003689; F:DNA clamp loader activity; IEA:InterPro.
									GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
748	A6TB30	336	RUVB_KLEP7 Holliday junction ATP-dependent DN...	34	0.13	39.3	50	62
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0009378; F:four-way junction helicase activity; IEA:InterPro.
									GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0009432; P:SOS response; IEA:UniProtKB-KW.
749	P45049	509	COMM_HAEIN Competence protein ComM OS=Haemoph...	218	0.0006	47	26	42
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0016851; F:magnesium chelatase activity; IEA:InterPro.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
									GO:0015995; P:chlorophyll biosynthetic process; IEA:InterPro.::GO:0006260; P:DNA replication; IEA:InterPro.::GO:0030420; P:establishment of competence for transformation; IEA:UniProtKB-KW.::GO:0015979; P:photosynthesis; IEA:InterPro.
750	Q82Y56	426	CLPX_NITEU ATP-dependent Clp protease ATP-bin...	77	0.12	39.3	32	51
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006457; P:protein folding; IEA:InterPro.
751	Q47FB7	420	CLPX_DECAR ATP-dependent Clp protease ATP-bin...	77	0.073	40	32	52
									GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006457; P:protein folding; IEA:InterPro.

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