Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL116W
Length:
726
Number of sequences:
5887
Description:
YDL116W NUP84 SGDID:S000002274, Chr IV from 251566-253746, Genome Release 64-1-1, Verified ORF, "Subunit of the nuclear pore complex (NPC); forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export, and NPC biogenesis; required also for transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P52891    726   NUP84_YEAST Nucleoporin NUP84 OS=Saccharomyce...7260     1479     100     100GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0005198; F:structural molecule activity; TAS:SGD.
GO:0050000; P:chromosome localization; IMP:SGD.::GO:0031990; P:mRNA export from nucleus in response to heat stress; IMP:SGD.::GO:0006609; P:mRNA-binding (hnRNP) protein import into nucleus; TAS:SGD.::GO:0006607; P:NLS-bearing substrate import into nucleus; TAS:SGD.::GO:0006998; P:nuclear envelope organization; IMP:SGD.::GO:0006999; P:nuclear pore organization; IMP:SGD.::GO:0000973; P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery; IMP:SGD.::GO:0006611; P:protein export from nucleus; TAS:SGD.::GO:0006974; P:response to DNA damage stimulus; IMP:SGD.::GO:0006610; P:ribosomal protein import into nucleus; TAS:SGD.::GO:0006407; P:rRNA export from nucleus; TAS:SGD.::GO:0006408; P:snRNA export from nucleus; TAS:SGD.::GO:0006608; P:snRNP protein import into nucleus; TAS:SGD.::GO:0006409; P:tRNA export from nucleus; TAS:SGD.
2Q10331    794   NU107_SCHPO Nucleoporin nup107 OS=Schizosacch...7151e-35     148     24     45GO:0005829; C:cytosol; IDA:PomBase.::GO:0031965; C:nuclear membrane; IDA:PomBase.::GO:0031080; C:Nup107-160 complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:PomBase.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0006407; P:rRNA export from nucleus; ISS:PomBase.
3P57740    925   NU107_HUMAN Nuclear pore complex protein Nup1...5950.0000000000008     75.9     21     42GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0031080; C:Nup107-160 complex; IDA:UniProtKB.
GO:0005487; F:nucleocytoplasmic transporter activity; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0005975; P:carbohydrate metabolic process; TAS:Reactome.::GO:0019221; P:cytokine-mediated signaling pathway; TAS:Reactome.::GO:0015758; P:glucose transport; TAS:Reactome.::GO:0000236; P:mitotic prometaphase; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; IDA:UniProtKB.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0010827; P:regulation of glucose transport; TAS:Reactome.::GO:0044281; P:small molecule metabolic process; TAS:Reactome.::GO:0055085; P:transmembrane transport; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
4Q8BH74    926   NU107_MOUSE Nuclear pore complex protein Nup1...5980.00000000001     72     21     41GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; ISS:UniProtKB.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.
5P52590    926   NU107_RAT Nuclear pore complex protein Nup107...6030.0000000003     67.4     21     41GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; ISS:UniProtKB.
GO:0005487; F:nucleocytoplasmic transporter activity; ISS:UniProtKB.
GO:0006406; P:mRNA export from nucleus; ISS:UniProtKB.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
6Q5DU99    413   PRE3_STALE Plasmid recombination enzyme type ...1921.4     35.8     28     43GO:0005727; C:extrachromosomal circular DNA; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:InterPro.
7Q8CUG0    413   PRE3_STAES Plasmid recombination enzyme type ...1921.4     35.8     28     43GO:0005727; C:extrachromosomal circular DNA; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:InterPro.
8Q5HJZ6    413   PRE3_STAAC Plasmid recombination enzyme type ...1921.4     35.8     28     43GO:0005727; C:extrachromosomal circular DNA; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:InterPro.
9P03864    413   PRE3_STAAU Plasmid recombination enzyme type ...1892.9     34.7     27     41GO:0005727; C:extrachromosomal circular DNA; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:InterPro.
10Q0P4G8    867   MTBP_XENTR Mdm2-binding protein OS=Xenopus tr...693.6     34.7     30     51
GO:0007050; P:cell cycle arrest; IEA:UniProtKB-KW.
records
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