Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL111C
Length:
265
Number of sequences:
5887
Description:
YDL111C RRP42 SGDID:S000002269, Chr IV from 264110-263313, Genome Release 64-1-1, reverse complement, Verified ORF, "Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91A3CQG6    733   PNP_STRSV Polyribonucleotide nucleotidyltrans...342.1     33.5     38     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
92A8AV53    728   PNP_STRGC Polyribonucleotide nucleotidyltrans...342.3     33.5     38     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
93B4U573    714   PNP_STREM Polyribonucleotide nucleotidyltrans...342.6     33.1     41     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
94B9EBG0    703   PNP_MACCJ Polyribonucleotide nucleotidyltrans...342.7     33.1     38     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
95Q80T14    4010   FRAS1_MOUSE Extracellular matrix protein FRAS...732.8     33.1     27     48GO:0005604; C:basement membrane; IDA:MGI.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0007154; P:cell communication; IEA:InterPro.::GO:0002009; P:morphogenesis of an epithelium; IMP:MGI.::GO:0015031; P:protein transport; IMP:MGI.::GO:0043588; P:skin development; IMP:MGI.
96A7I002    711   PNP_CAMHC Polyribonucleotide nucleotidyltrans...543     33.1     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
97C3NED0    275   ECX2_SULIY Probable exosome complex exonuclea...2123.1     32.7     20     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
98C3MQ47    275   ECX2_SULIL Probable exosome complex exonuclea...2123.1     32.7     20     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
99C4KHE3    275   ECX2_SULIK Probable exosome complex exonuclea...2123.1     32.7     20     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
100B2U8D8    238   RNPH_RALPJ Ribonuclease PH OS=Ralstonia picke...504     32     34     46
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
101B3EU51    713   PNP_AMOA5 Polyribonucleotide nucleotidyltrans...714.4     32.3     32     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
102Q10205    270   RRP43_SCHPO Exosome complex component rrp43 O...2415.5     31.6     20     47GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
103P55013    1191   S12A2_SQUAC Solute carrier family 12 member 2...1106     32     30     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0015377; F:cation:chloride symporter activity; IEA:InterPro.
GO:0006813; P:potassium ion transport; IEA:UniProtKB-KW.::GO:0006814; P:sodium ion transport; IEA:UniProtKB-KW.
104P39728    267   YAD7_YEAST Uncharacterized protein YAL037W OS...456.7     31.6     42     62
105A6VZ30    388   SUCC_MARMS Succinyl-CoA ligase [ADP-forming] ...1147.3     31.6     27     43
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004775; F:succinate-CoA ligase (ADP-forming) activity; IEA:EC.
GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW.
106O59224    274   ECX2_PYRHO Probable exosome complex exonuclea...2087.5     31.2     21     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
records
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