Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL111C
Length:
265
Number of sequences:
5887
Description:
YDL111C RRP42 SGDID:S000002269, Chr IV from 264110-263313, Genome Release 64-1-1, reverse complement, Verified ORF, "Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12277    265   RRP42_YEAST Exosome complex component RRP42 O...2650     530     100     100GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:SGD.::GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0070651; P:nonfunctional rRNA decay; IC:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IC:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IC:SGD.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IC:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IC:SGD.
2Q15024    291   EXOS7_HUMAN Exosome complex component RRP42 O...2480.0000000000006     70.5     25     51GO:0005829; C:cytosol; TAS:Reactome.::GO:0000178; C:exosome (RNase complex); IDA:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; TAS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006364; P:rRNA processing; TAS:UniProtKB.
3Q9D0M0    291   EXOS7_MOUSE Exosome complex exonuclease RRP42...2440.000000000008     67.4     25     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4O60124    299   RRP42_SCHPO Exosome complex component rrp42 O...1410.00000004     56.6     33     50GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
5Q8TYC2    267   ECX2_METKA Probable exosome complex exonuclea...2540.0000001     55.1     24     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
6Q97BZ4    260   ECX2_THEVO Probable exosome complex exonuclea...2700.0000004     53.5     22     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
7Q0W2Y7    260   ECX2_UNCMA Probable exosome complex exonuclea...2750.000006     50.1     23     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
8Q9HIP1    260   ECX2_THEAC Probable exosome complex exonuclea...2680.00005     47.4     20     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
9Q8PTT7    266   ECX2_METMA Probable exosome complex exonuclea...2400.00006     47     20     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
10Q8TGX5    266   ECX2_METAC Probable exosome complex exonuclea...2370.0004     44.7     20     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
11Q5JIR7    272   ECX2_PYRKO Probable exosome complex exonuclea...2090.001     43.1     25     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
12C5A2B8    273   ECX2_THEGJ Probable exosome complex exonuclea...2090.001     42.7     23     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
13B6YSE7    272   ECX2_THEON Probable exosome complex exonuclea...2170.002     42.4     22     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
14Q975G9    275   ECX2_SULTO Probable exosome complex exonuclea...2420.002     42.4     24     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
15Q54VM4    324   EXOS7_DICDI Putative exosome complex exonucle...568     31.2     32     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
16Q8ZVN0    274   ECX2_PYRAE Probable exosome complex exonuclea...2210.007     40.8     20     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
17Q2GEY8    757   PNP_NEOSM Polyribonucleotide nucleotidyltrans...730.024     39.7     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
18A2BKC0    255   ECX1_HYPBU Probable exosome complex exonuclea...430.086     37.4     37     63GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0016896; F:exoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006396; P:RNA processing; IEA:InterPro.
19B2J9Q1    247   RNPH_NOSP7 Ribonuclease PH OS=Nostoc punctifo...510.1     37     41     51
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
20C1DI48    239   RNPH_AZOVD Ribonuclease PH OS=Azotobacter vin...520.17     36.2     37     50
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
21B2V890    257   RNPH_SULSY Ribonuclease PH OS=Sulfurihydrogen...270.17     36.2     56     67
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
22Q8U0M0    277   ECX2_PYRFU Probable exosome complex exonuclea...2080.19     36.2     19     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006401; P:RNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
23Q4L5X7    700   PNP_STAHJ Polyribonucleotide nucleotidyltrans...340.24     36.6     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
24Q08CS6    572   MOXD2_DANRE DBH-like monooxygenase protein 2 ...730.26     36.2     30     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005507; F:copper ion binding; IEA:InterPro.::GO:0004500; F:dopamine beta-monooxygenase activity; IEA:InterPro.
GO:0006584; P:catecholamine metabolic process; IEA:InterPro.
25Q1J9S6    701   PNP_STRPB Polyribonucleotide nucleotidyltrans...340.27     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
26A2RGH2    710   PNP_STRPG Polyribonucleotide nucleotidyltrans...340.28     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
27Q1J4N2    710   PNP_STRPF Polyribonucleotide nucleotidyltrans...340.28     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
28Q1JJX5    710   PNP_STRPC Polyribonucleotide nucleotidyltrans...340.28     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
29Q8NZC6    710   PNP_STRP8 Polyribonucleotide nucleotidyltrans...340.28     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
30B5XIK4    710   PNP_STRPZ Polyribonucleotide nucleotidyltrans...340.29     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
31Q99XZ5    710   PNP_STRP1 Polyribonucleotide nucleotidyltrans...340.29     36.2     44     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
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