Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL043C
Length:
266
Number of sequences:
5887
Description:
YDL043C PRP11 SGDID:S000002201, Chr IV from 376480-375680, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the SF3a splicing factor complex, required for spliceosome assembly"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q07350    266   PRP11_YEAST Pre-mRNA-splicing factor PRP11 OS...2660     549     100     100GO:0005686; C:U2 snRNP; TAS:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003723; F:RNA binding; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000245; P:spliceosomal complex assembly; IDA:SGD.
2Q9P7L8    217   SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS...2571e-18     85.9     28     44GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
3Q54B65    215   SF3A2_DICDI Splicing factor 3A subunit 2 OS=D...2505e-16     78.2     28     46GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:dictyBase.::GO:0005681; C:spliceosomal complex; ISS:dictyBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000389; P:nuclear mRNA 3'-splice site recognition; ISS:dictyBase.
4A5PJN8    477   SF3A2_BOVIN Splicing factor 3A subunit 2 OS=B...2580.0000000000001     73.6     27     42
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q6AXT8    471   SF3A2_RAT Splicing factor 3A subunit 2 OS=Rat...2580.0000000000002     72.8     27     42GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q15428    464   SF3A2_HUMAN Splicing factor 3A subunit 2 OS=H...2580.0000000000003     72.8     27     42GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:ProtInc.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000389; P:nuclear mRNA 3'-splice site recognition; TAS:HGNC.
7Q62203    475   SF3A2_MOUSE Splicing factor 3A subunit 2 OS=M...2580.00000000009     65.1     26     41GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8A1KV38    145   RNH_NEIMF Ribonuclease H OS=FAM18). GN=rnhA O...480.44     34.3     40     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004523; F:ribonuclease H activity; IEA:EC.
9Q9JTD9    145   RNH_NEIMA Ribonuclease HI OS=Neisseria mening...480.46     34.3     40     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004523; F:ribonuclease H activity; IEA:EC.
10Q9JYE5    145   RNH_NEIMB Ribonuclease HI OS=Neisseria mening...480.47     34.3     40     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004523; F:ribonuclease H activity; IEA:EC.
11Q5F7K9    145   RNH_NEIG1 Ribonuclease H OS=Neisseria gonorrh...480.47     34.3     40     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004523; F:ribonuclease H activity; IEA:EC.
12Q811F1    908   ZBT41_MOUSE Zinc finger and BTB domain-contai...493.4     32.7     37     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13Q5SVQ8    909   ZBT41_HUMAN Zinc finger and BTB domain-contai...503.9     32.7     36     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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