Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL030W
Length:
530
Number of sequences:
5887
Description:
YDL030W PRP9 SGDID:S000002188, Chr IV from 397537-399129, Genome Release 64-1-1, Verified ORF, "Subunit of the SF3a splicing factor complex, required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P19736    530   PRP9_YEAST Pre-mRNA-splicing factor PRP9 OS=S...5300     1092     100     100GO:0005686; C:U2 snRNP; TAS:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003723; F:RNA binding; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:SGD.
2O59706    492   SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS...5639e-52     189     29     47GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IDA:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
3Q9D554    501   SF3A3_MOUSE Splicing factor 3A subunit 3 OS=M...4141e-32     133     28     44
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4O46106    503   NOI_DROME Splicing factor 3A subunit 3 OS=Dro...4162e-32     133     26     43GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0005686; C:U2 snRNP; ISS:FlyBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009566; P:fertilization; IMP:UniProtKB.::GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0051533; P:positive regulation of NFAT protein import into nucleus; IMP:FlyBase.
5Q12874    501   SF3A3_HUMAN Splicing factor 3A subunit 3 OS=H...1341e-29     125     45     63GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000389; P:nuclear mRNA 3'-splice site recognition; TAS:HGNC.
6Q08004    166   BUD20_YEAST Bud site selection protein 20 OS=...530.2     36.6     28     57GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000282; P:cellular bud site selection; IMP:SGD.
7Q5R4W8    310   ZN346_PONAB Zinc finger protein 346 OS=Pongo ...840.32     37     31     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003725; F:double-stranded RNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
8Q9UL40    294   ZN346_HUMAN Zinc finger protein 346 OS=Homo s...360.39     36.6     44     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0003725; F:double-stranded RNA binding; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9B0JZ85    354   ZN346_XENTR Zinc finger protein 346 OS=Xenopu...600.54     36.6     33     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003725; F:double-stranded RNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10Q9R0B7    294   ZN346_MOUSE Zinc finger protein 346 OS=Mus mu...360.71     35.8     42     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:MGI.
GO:0003725; F:double-stranded RNA binding; ISS:UniProtKB.::GO:0005515; F:protein binding; IPI:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IMP:MGI.
11Q8AVN9    524   ZN346_XENLA Zinc finger protein 346 OS=Xenopu...262.8     34.3     50     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003725; F:double-stranded RNA binding; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
12Q8BZ94    229   ZMAT4_MOUSE Zinc finger matrin-type protein 4...303     33.5     40     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
13Q9H898    229   ZMAT4_HUMAN Zinc finger matrin-type protein 4...303.2     33.5     40     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
14Q0VD35    229   ZMAT4_BOVIN Zinc finger matrin-type protein 4...303.3     33.5     40     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
15Q9P370    124   BUD20_SCHPO Zinc finger protein bud20 OS=Schi...733.6     32.3     27     45GO:0005730; C:nucleolus; IDA:PomBase.
GO:0008270; F:zinc ion binding; IEA:InterPro.
16Q6H236    2387   PEG3_BOVIN Paternally-expressed gene 3 protei...618.5     33.1     39     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
17Q07653    1046   HBT1_YEAST Protein HBT1 OS=Saccharomyces cere...429.3     32.7     38     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005937; C:mating projection; IDA:SGD.::GO:0001950; C:plasma membrane enriched fraction; IDA:SGD.
GO:0000753; P:cell morphogenesis involved in conjugation with cellular fusion; IMP:SGD.::GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW.
18A4JEU8    150   RL9_BURVG 50S ribosomal protein L9 OS=cepacia...1119.5     31.6     27     44GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
records
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