Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL002C
Length:
203
Number of sequences:
5887
Description:
YDL002C NHP10 SGDID:S000002160, Chr IV from 447578-446967, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein related to mammalian high mobility group proteins; preferentially binds DNA ends, protecting them from exonucleatic cleavage; likely component of the chromatin-remodeling complex INO80 complex; proposed to be involved in DNA repair"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91Q6DIJ5    345   HM20A_XENTR High mobility group protein 20A O...920.021     38.9     27     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
92Q05153    646   SSRP1_ARATH FACT complex subunit SSRP1 OS=Ara...830.024     38.9     23     54GO:0035101; C:FACT complex; IDA:TAIR.::GO:0005719; C:nuclear euchromatin; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
93Q9SGS2    338   HMGB9_ARATH High mobility group B protein 9 O...880.029     38.1     31     49GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IDA:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
94Q9MAT6    448   HMG15_ARATH High mobility group B protein 15 ...740.03     38.5     32     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
95Q6AZF8    345   HM20A_XENLA High mobility group protein 20A O...910.037     38.1     27     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
96Q76IQ7    473   TOX2_RAT TOX high mobility group box family m...910.049     37.7     27     49GO:0005634; C:nucleus; IDA:RGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0001085; F:RNA polymerase II transcription factor binding; IPI:RGD.
GO:0008585; P:female gonad development; IEP:RGD.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:RGD.::GO:0034698; P:response to gonadotropin stimulus; IEP:RGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
97P36394    121   SRY_RAT Sex-determining region Y protein OS=R...640.058     35.8     28     63GO:0005737; C:cytoplasm; IDA:RGD.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0019899; F:enzyme binding; IPI:RGD.::GO:0043565; F:sequence-specific DNA binding; IMP:RGD.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0030238; P:male sex determination; IEP:RGD.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:RGD.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
98Q8WY36    941   BBX_HUMAN HMG box transcription factor BBX OS...600.067     37.4     30     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
99P40628    242   HMGH_IIV6 High mobility group protein homolog...800.074     37     33     50GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
100Q8VBW5    907   BBX_MOUSE HMG box transcription factor BBX OS...600.079     37.4     30     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
101Q02486    183   ABF2_YEAST ARS-binding factor 2, mitochondria...610.086     36.2     39     62GO:0000262; C:mitochondrial chromosome; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; IDA:SGD.
GO:0090139; P:mitochondrial DNA packaging; IMP:SGD.::GO:0000002; P:mitochondrial genome maintenance; IMP:SGD.::GO:0000001; P:mitochondrion inheritance; IMP:SGD.
102Q04891    613   SOX13_MOUSE Transcription factor SOX-13 OS=Mu...640.11     37     30     58GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
103P40657    784   SOX15_DROME Putative transcription factor SOX...810.11     37     25     56GO:0005634; C:nucleus; IDA:FlyBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0022416; P:chaeta development; IMP:FlyBase.::GO:0043066; P:negative regulation of apoptotic process; IMP:FlyBase.::GO:0008285; P:negative regulation of cell proliferation; IMP:FlyBase.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IGI:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0035220; P:wing disc development; IMP:FlyBase.
104Q9UN79    622   SOX13_HUMAN Transcription factor SOX-13 OS=Ho...640.12     36.6     30     58GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0043565; F:sequence-specific DNA binding; ISS:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
105P33417    597   IXR1_YEAST Intrastrand cross-link recognition...720.15     36.2     31     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IDA:SGD.::GO:0043565; F:sequence-specific DNA binding; IDA:SGD.
GO:0071456; P:cellular response to hypoxia; IMP:SGD.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
106Q10241    223   CMB1_SCHPO Mismatch-binding protein cmb1 OS=S...610.17     35.8     28     61GO:0005739; C:mitochondrion; IDA:PomBase.::GO:0005634; C:nucleus; NAS:PomBase.
GO:0003684; F:damaged DNA binding; IDA:PomBase.
GO:0006281; P:DNA repair; TAS:PomBase.
107Q196Z2    201   VF401_IIV3 High mobility group protein homolo...650.18     35.4     31     49GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
108P40656    669   SOX14_DROME Putative transcription factor SOX...590.18     36.2     27     59GO:0005634; C:nucleus; IMP:FlyBase.
GO:0008301; F:DNA binding, bending; IDA:FlyBase.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO:0048813; P:dendrite morphogenesis; IGI:FlyBase.::GO:0007552; P:metamorphosis; IMP:FlyBase.::GO:0016322; P:neuron remodeling; IGI:FlyBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IMP:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
109Q3USZ2    394   UBFL1_MOUSE Upstream-binding factor 1-like pr...890.25     35.4     27     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
110O55063    57   SRY_APOAG Sex-determining region Y protein OS...490.27     33.1     27     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
111P91943    751   PANG1_DROME Protein pangolin, isoforms A/H/I ...1100.3     35.4     24     46GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0005667; C:transcription factor complex; IPI:FlyBase.
GO:0008013; F:beta-catenin binding; IBA:RefGenome.::GO:0019900; F:kinase binding; IPI:FlyBase.::GO:0070491; F:repressing transcription factor binding; IPI:FlyBase.::GO:0003705; F:RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity; IDA:FlyBase.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO:0060070; P:canonical Wnt receptor signaling pathway; IBA:RefGenome.::GO:0007507; P:heart development; TAS:FlyBase.::GO:0007476; P:imaginal disc-derived wing morphogenesis; IMP:FlyBase.::GO:0007500; P:mesodermal cell fate determination; TAS:FlyBase.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:UniProtKB.::GO:0030178; P:negative regulation of Wnt receptor signaling pathway; NAS:FlyBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:FlyBase.::GO:0045610; P:regulation of hemocyte differentiation; IMP:FlyBase.::GO:0072091; P:regulation of stem cell proliferation; IMP:FlyBase.::GO:0007435; P:salivary gland morphogenesis; IMP:FlyBase.::GO:0007367; P:segment polarity determination; IEA:UniProtKB-KW.::GO:0035277; P:spiracle morphogenesis, open tracheal system; IMP:FlyBase.
112Q62563    355   SRY_MUSSP Sex-determining region Y protein OS...640.32     35     28     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
113Q62565    311   SRY_MUSSI Sex-determining region Y protein OS...640.33     35     28     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
114P35712    828   SOX6_HUMAN Transcription factor SOX-6 OS=Homo...500.38     35     28     64GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003677; F:DNA binding; NAS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
GO:0071560; P:cellular response to transforming growth factor beta stimulus; IDA:UniProtKB.::GO:0007517; P:muscle organ development; NAS:UniProtKB.::GO:0061036; P:positive regulation of cartilage development; IDA:UniProtKB.::GO:0032332; P:positive regulation of chondrocyte differentiation; IDA:UniProtKB.::GO:2000741; P:positive regulation of mesenchymal stem cell differentiation; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
115P40645    827   SOX6_MOUSE Transcription factor SOX-6 OS=Mus ...500.38     35     28     64GO:0005667; C:transcription factor complex; IC:MGI.
GO:0046982; F:protein heterodimerization activity; IPI:MGI.::GO:0043565; F:sequence-specific DNA binding; IDA:MGI.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:MGI.::GO:0044212; F:transcription regulatory region DNA binding; IDA:MGI.
GO:0035051; P:cardiac cell differentiation; IDA:MGI.::GO:0051216; P:cartilage development; IGI:MGI.::GO:0000902; P:cell morphogenesis; IMP:MGI.::GO:0048821; P:erythrocyte development; IMP:MGI.::GO:0016458; P:gene silencing; IMP:MGI.::GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0042692; P:muscle cell differentiation; IDA:MGI.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0021778; P:oligodendrocyte cell fate specification; IMP:MGI.::GO:0032332; P:positive regulation of chondrocyte differentiation; IDA:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:MGI.::GO:0009791; P:post-embryonic development; IMP:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
116Q5RCU4    787   SOX6_PONAB Transcription factor SOX-6 OS=Pong...500.39     35     28     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
117O55170    466   SOX10_RAT Transcription factor SOX-10 OS=Ratt...980.39     35     24     50GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0008134; F:transcription factor binding; IPI:UniProtKB.
GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0048863; P:stem cell differentiation; IEP:RGD.
118A5A763    469   SOX10_PIG Transcription factor SOX-10 OS=Sus ...980.4     35     24     50GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
119P56693    466   SOX10_HUMAN Transcription factor SOX-10 OS=Ho...980.41     35     24     50GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; TAS:ProtInc.
120Q04888    466   SOX10_MOUSE Transcription factor SOX-10 OS=Mu...980.41     35     24     50GO:0031315; C:extrinsic to mitochondrial outer membrane; IDA:MGI.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; IDA:UniProtKB.::GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:UniProtKB.::GO:0003705; F:RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity; IDA:MGI.
GO:0048469; P:cell maturation; IMP:MGI.::GO:0048589; P:developmental growth; IMP:MGI.::GO:0048546; P:digestive tract morphogenesis; IMP:MGI.::GO:0048484; P:enteric nervous system development; IMP:UniProtKB.::GO:0001701; P:in utero embryonic development; IGI:MGI.::GO:0030318; P:melanocyte differentiation; IMP:MGI.::GO:0043066; P:negative regulation of apoptotic process; IMP:UniProtKB.::GO:0090090; P:negative regulation of canonical Wnt receptor signaling pathway; IDA:UniProtKB.::GO:0001755; P:neural crest cell migration; IMP:UniProtKB.::GO:0048709; P:oligodendrocyte differentiation; IMP:MGI.::GO:0007422; P:peripheral nervous system development; IGI:MGI.::GO:0014015; P:positive regulation of gliogenesis; IMP:UniProtKB.::GO:0002052; P:positive regulation of neuroblast proliferation; IMP:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.
121P36402    384   TCF7_HUMAN Transcription factor 7 OS=Homo sap...1070.43     34.7     32     52GO:0005667; C:transcription factor complex; IBA:RefGenome.
GO:0008013; F:beta-catenin binding; IBA:RefGenome.::GO:0003682; F:chromatin binding; IBA:RefGenome.::GO:0043565; F:sequence-specific DNA binding; IBA:RefGenome.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IBA:RefGenome.::GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO:0007420; P:brain development; IBA:RefGenome.::GO:0060070; P:canonical Wnt receptor signaling pathway; IBA:RefGenome.::GO:0071353; P:cellular response to interleukin-4; IDA:UniProtKB.::GO:0048699; P:generation of neurons; IBA:RefGenome.::GO:0006955; P:immune response; TAS:ProtInc.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:RefGenome.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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