Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDL002C
Length:
203
Number of sequences:
5887
Description:
YDL002C NHP10 SGDID:S000002160, Chr IV from 447578-446967, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein related to mammalian high mobility group proteins; preferentially binds DNA ends, protecting them from exonucleatic cleavage; likely component of the chromatin-remodeling complex INO80 complex; proposed to be involved in DNA repair"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P17741    210   HMGB2_PIG High mobility group protein B2 OS=S...744.5     31.2     20     49GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
62Q24537    393   HMG2_DROME High mobility group protein DSP1 O...391.7     33.1     31     72GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0005700; C:polytene chromosome; IDA:FlyBase.
GO:0008301; F:DNA binding, bending; IDA:FlyBase.::GO:0003697; F:single-stranded DNA binding; NAS:UniProtKB.::GO:0017025; F:TBP-class protein binding; IPI:FlyBase.
GO:0006338; P:chromatin remodeling; IMP:FlyBase.::GO:0006268; P:DNA unwinding involved in replication; NAS:UniProtKB.::GO:0035218; P:leg disc development; IMP:FlyBase.::GO:0008348; P:negative regulation of antimicrobial humoral response; IMP:FlyBase.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; IDA:FlyBase.::GO:0043388; P:positive regulation of DNA binding; IDA:FlyBase.::GO:0007379; P:segment specification; IMP:FlyBase.
63Q9W602    693   SSRP1_XENLA FACT complex subunit SSRP1 OS=Xen...860.0004     44.3     29     56GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
64Q4H2R2    704   SSRP1_CIOIN FACT complex subunit SSRP1 OS=Cio...770.0006     43.5     29     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
65Q04678    706   SSRP1_CHICK FACT complex subunit SSRP1 OS=Gal...760.0007     43.5     28     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
66P27347    157   MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea ...760.0007     42     32     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
67Q9LG02    337   HMG11_ARATH Putative high mobility group B pr...1030.0007     43.1     29     47GO:0009507; C:chloroplast; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
68P40644    200   HMGH_STRPU High mobility group protein 1 homo...750.0008     42.7     31     56GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
69P40621    161   HMGL_WHEAT HMG1/2-like protein OS=Triticum ae...750.0008     42     31     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
70Q91ZW1    244   TFAM_RAT Transcription factor A, mitochondria...750.001     42.4     27     56GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0031072; F:heat shock protein binding; IPI:RGD.::GO:0070363; F:mitochondrial light strand promoter sense binding; ISS:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IMP:RGD.
GO:0006264; P:mitochondrial DNA replication; TAS:RGD.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006391; P:transcription initiation from mitochondrial promoter; ISS:UniProtKB.
71Q4H0T5    246   TFAM_TRACR Transcription factor A, mitochondr...990.001     42.4     28     57GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0070363; F:mitochondrial light strand promoter sense binding; ISS:UniProtKB.
GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006391; P:transcription initiation from mitochondrial promoter; ISS:UniProtKB.
72Q04931    709   SSRP1_RAT FACT complex subunit SSRP1 OS=Rattu...720.002     42.4     28     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; NAS:RGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
73Q9N1Q5    242   SP100_HYLLA Nuclear autoantigen Sp-100 OS=Hyl...540.002     41.6     39     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
74Q0II87    246   TFAM_BOVIN Transcription factor A, mitochondr...1080.002     41.6     26     53GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0070363; F:mitochondrial light strand promoter sense binding; ISS:UniProtKB.
GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006391; P:transcription initiation from mitochondrial promoter; ISS:UniProtKB.
75Q5D144    246   TFAM_PIG Transcription factor A, mitochondria...1080.002     41.6     25     53GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0070363; F:mitochondrial light strand promoter sense binding; ISS:UniProtKB.
GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006391; P:transcription initiation from mitochondrial promoter; ISS:UniProtKB.
76Q42344    138   HMGB4_ARATH High mobility group B protein 4 O...870.002     40     25     45GO:0000785; C:chromatin; TAS:TAIR.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0003682; F:chromatin binding; TAS:TAIR.::GO:0003677; F:DNA binding; IDA:TAIR.::GO:0030527; F:structural constituent of chromatin; TAS:TAIR.
GO:0006333; P:chromatin assembly or disassembly; TAS:TAIR.
77Q9DC33    346   HM20A_MOUSE High mobility group protein 20A O...850.003     41.2     31     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
78Q9NP66    347   HM20A_HUMAN High mobility group protein 20A O...850.004     40.8     31     48GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003677; F:DNA binding; NAS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
79P26586    271   HMGL_TRYBR High mobility group protein homolo...660.004     40.8     26     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
80Q5ZKF4    348   HM20A_CHICK High mobility group protein 20A O...850.005     40.4     29     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
81Q8LDF9    241   HMGB7_ARATH High mobility group B protein 7 O...810.006     40     32     48GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IDA:TAIR.
82O64702    151   HMG14_ARATH High mobility group B protein 14 ...870.006     39.3     23     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
83Q9N1Q7    215   SP100_PANTR Nuclear autoantigen Sp-100 OS=Pan...540.009     39.7     37     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
84Q9N1Q6    225   SP100_GORGO Nuclear autoantigen Sp-100 OS=Gor...540.01     39.3     37     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
85Q32L34    194   HMGB4_BOVIN High mobility group protein B4 OS...760.01     39.3     28     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
86Q09390    235   HMG12_CAEEL High mobility group protein 1.2 O...654.6     31.2     28     57GO:0005634; C:nucleus; IDA:WormBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0001708; P:cell fate specification; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040018; P:positive regulation of multicellular organism growth; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0040025; P:vulval development; IMP:WormBase.::GO:0016055; P:Wnt receptor signaling pathway; IGI:WormBase.
87Q55C24    141   NHP6_DICDI Non-histone chromosomal protein 6 ...760.011     38.5     26     61GO:0000790; C:nuclear chromatin; ISS:dictyBase.
GO:0003682; F:chromatin binding; ISS:dictyBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006325; P:chromatin organization; ISS:dictyBase.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:dictyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
88Q8WW32    186   HMGB4_HUMAN High mobility group protein B4 OS...760.017     38.5     26     57GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
89P23497    879   SP100_HUMAN Nuclear autoantigen Sp-100 OS=Hom...540.017     39.3     37     56GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0034399; C:nuclear periphery; IDA:BHF-UCL.::GO:0005730; C:nucleolus; IDA:BHF-UCL.::GO:0016605; C:PML body; IDA:BHF-UCL.
GO:0070087; F:chromo shadow domain binding; IPI:BHF-UCL.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042802; F:identical protein binding; IPI:BHF-UCL.::GO:0019900; F:kinase binding; IPI:BHF-UCL.::GO:0042803; F:protein homodimerization activity; IPI:BHF-UCL.::GO:0003713; F:transcription coactivator activity; IDA:BHF-UCL.::GO:0003714; F:transcription corepressor activity; IDA:BHF-UCL.::GO:0008134; F:transcription factor binding; IPI:BHF-UCL.
GO:0006978; P:DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator; IDA:BHF-UCL.::GO:0060333; P:interferon-gamma-mediated signaling pathway; IC:BHF-UCL.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0051271; P:negative regulation of cellular component movement; IMP:BHF-UCL.::GO:0043392; P:negative regulation of DNA binding; IDA:BHF-UCL.::GO:0043433; P:negative regulation of sequence-specific DNA binding transcription factor activity; IDA:BHF-UCL.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IMP:BHF-UCL.::GO:0032897; P:negative regulation of viral transcription; IDA:BHF-UCL.::GO:0051091; P:positive regulation of sequence-specific DNA binding transcription factor activity; IDA:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:BHF-UCL.::GO:0034097; P:response to cytokine stimulus; IDA:BHF-UCL.::GO:0032526; P:response to retinoic acid; IDA:BHF-UCL.::GO:0034340; P:response to type I interferon; IDA:BHF-UCL.::GO:0048384; P:retinoic acid receptor signaling pathway; IC:BHF-UCL.::GO:0060337; P:type I interferon-mediated signaling pathway; IC:BHF-UCL.
90Q00059    246   TFAM_HUMAN Transcription factor A, mitochondr...750.02     38.5     27     53GO:0042645; C:mitochondrial nucleoid; IDA:BHF-UCL.
GO:0003682; F:chromatin binding; IDA:UniProtKB.::GO:0070363; F:mitochondrial light strand promoter sense binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
GO:0006261; P:DNA-dependent DNA replication; TAS:ProtInc.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006356; P:regulation of transcription from RNA polymerase I promoter; TAS:ProtInc.::GO:0006391; P:transcription initiation from mitochondrial promoter; IDA:UniProtKB.
91Q6DIJ5    345   HM20A_XENTR High mobility group protein 20A O...920.021     38.9     27     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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