Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YCR093W
Length:
2108
Number of sequences:
5887
Description:
YCR093W CDC39 SGDID:S000000689, Chr III from 280117-286443, Genome Release 64-1-1, Verified ORF, "Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P25655    2108   NOT1_YEAST General negative regulator of tran...21080     4305     100     100GO:0030015; C:CCR4-NOT core complex; IPI:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; TAS:SGD.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IDA:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0007124; P:pseudohyphal growth; IMP:SGD.::GO:0051726; P:regulation of cell cycle; IMP:SGD.::GO:0000749; P:response to pheromone involved in conjugation with cellular fusion; IMP:SGD.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:SGD.
2A0JP85    2388   CNOT1_XENTR CCR4-NOT transcription complex su...16315e-148     516     27     47
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3A5YKK6    2376   CNOT1_HUMAN CCR4-NOT transcription complex su...1351e-18     97.1     34     59GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6ZQ08    2375   CNOT1_MOUSE CCR4-NOT transcription complex su...1351e-18     97.1     34     59GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5A1A5H6    2374   CNOT1_DANRE CCR4-NOT transcription complex su...1356e-19     98.6     34     60
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6P87112    2100   NOT1_SCHPO General negative regulator of tran...10288e-76     285     25     48GO:0030015; C:CCR4-NOT core complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006354; P:transcription elongation, DNA-dependent; IC:PomBase.
7B4RWY7    313   RSMH_ALTMD Ribosomal RNA small subunit methyl...750.5     38.5     35     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8Q6CRV3    349   PFA5_KLULA Palmitoyltransferase PFA5 OS=1267 ...740.98     37.7     31     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016746; F:transferase activity, transferring acyl groups; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9A1JP96    251   XNI_YERE8 Protein Xni OS=Yersinia enterocolit...932.5     36.2     30     41
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
10Q47LE7    434   NUOD_THEFY NADH-quinone oxidoreductase subuni...713.6     36.2     30     46GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0051287; F:NAD binding; IEA:InterPro.::GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:EC.::GO:0048038; F:quinone binding; IEA:UniProtKB-KW.
GO:0006810; P:transport; IEA:UniProtKB-KW.
11B1MPG7    432   NUOD_MYCA9 NADH-quinone oxidoreductase subuni...714.1     35.8     28     45GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0051287; F:NAD binding; IEA:InterPro.::GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:EC.::GO:0048038; F:quinone binding; IEA:UniProtKB-KW.
GO:0006810; P:transport; IEA:UniProtKB-KW.
12P23581    830   RPOC2_EUGGR DNA-directed RNA polymerase subun...1575     35.8     29     46GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
13Q49WA1    443   G6PI_STAS1 Glucose-6-phosphate isomerase OS=D...1915.7     35.4     26     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004347; F:glucose-6-phosphate isomerase activity; IEA:EC.
GO:0006094; P:gluconeogenesis; IEA:UniProtKB-KW.::GO:0006096; P:glycolysis; IEA:UniProtKB-KW.
records
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