Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YCR077C
Length:
796
Number of sequences:
5887
Description:
YCR077C PAT1 SGDID:S000000673, Chr III from 252628-250238, Genome Release 64-1-1, reverse complement, Verified ORF, "Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P25644    796   PAT1_YEAST DNA topoisomerase 2-associated pro...7960     1629     100     100GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0022627; C:cytosolic small ribosomal subunit; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IMP:SGD.::GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IMP:SGD.::GO:0001731; P:formation of translation preinitiation complex; IMP:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045947; P:negative regulation of translational initiation; IDA:SGD.
2O42958    754   PAT1_SCHPO DNA topoisomerase 2-associated pro...8693e-51     195     26     42GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006446; P:regulation of translational initiation; ISS:PomBase.
3Q32N92    718   PATL1_XENLA Protein PAT1 homolog 1 OS=Xenopus...360.0003     47.8     47     78GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:UniProtKB.
4A2RRV3    765   PATL1_DANRE Protein PAT1 homolog 1 OS=Danio r...910.004     44.3     33     53GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:UniProtKB.
5Q3TC46    770   PATL1_MOUSE Protein PAT1 homolog 1 OS=Mus mus...720.004     44.3     35     56GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:UniProtKB.
6Q5R8Q4    770   PATL1_PONAB Protein PAT1 homolog 1 OS=Pongo a...720.004     44.3     35     56GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:UniProtKB.
7Q86TB9    770   PATL1_HUMAN Protein PAT1 homolog 1 OS=Homo sa...720.005     44.3     35     56GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; IDA:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IDA:UniProtKB.::GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0010467; P:gene expression; TAS:Reactome.
8B5DF93    770   PATL1_RAT Protein PAT1 homolog 1 OS=Rattus no...360.005     43.9     44     75GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:UniProtKB.
9Q700K0    5141   SSPO_RAT SCO-spondin OS=Rattus norvegicus (Ra...1480.034     41.6     24     36GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.
GO:0007155; P:cell adhesion; IEA:UniProtKB-KW.
10Q9Y6V0    5065   PCLO_HUMAN Protein piccolo OS=Homo sapiens (H...850.14     39.7     36     47GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; NAS:UniProtKB.::GO:0016020; C:membrane; IEA:InterPro.::GO:0008021; C:synaptic vesicle; IEA:InterPro.
GO:0005509; F:calcium ion binding; ISS:UniProtKB.::GO:0005544; F:calcium-dependent phospholipid binding; ISS:UniProtKB.::GO:0005522; F:profilin binding; ISS:UniProtKB.::GO:0005215; F:transporter activity; IEA:InterPro.
GO:0007010; P:cytoskeleton organization; ISS:UniProtKB.::GO:0016079; P:synaptic vesicle exocytosis; NAS:UniProtKB.
11B5DEB9    735   PATL2_XENTR Protein PAT1 homolog 2 OS=Xenopus...360.21     38.9     33     78GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0017148; P:negative regulation of translation; ISS:UniProtKB.
12Q4V7K4    733   PATL2_XENLA Protein PAT1 homolog 2 OS=Xenopus...360.25     38.5     33     78GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0010607; P:negative regulation of cytoplasmic mRNA processing body assembly; TAS:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:UniProtKB.
13A0Q7X9    380   LPXB_FRATN Lipid-A-disaccharide synthase OS=F...470.85     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
14A4IWJ7    380   LPXB_FRATW Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
15Q5NEQ2    380   LPXB_FRATT Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
16Q0BN19    380   LPXB_FRATO Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
17B2SFX3    380   LPXB_FRATM Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
18Q2A4P3    380   LPXB_FRATH Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
19A7NAP6    380   LPXB_FRATF Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
20Q14G55    380   LPXB_FRAT1 Lipid-A-disaccharide synthase OS=F...470.92     36.6     45     57
GO:0008915; F:lipid-A-disaccharide synthase activity; IEA:EC.
GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.
21P0C1I5    170   PPIL3_RHIO9 Peptidyl-prolyl cis-trans isomera...702.7     33.9     31     46
GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.
GO:0006457; P:protein folding; IEA:UniProtKB-KW.
22Q8K3T3    1285   PER1_SPAJD Period circadian protein homolog 1...903.5     35     31     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004871; F:signal transducer activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
23Q9NBD7    1491   CLASP_DROME CLIP-associating protein OS=Droso...1854.8     34.7     24     44GO:0005813; C:centrosome; IDA:FlyBase.::GO:0000775; C:chromosome, centromeric region; IDA:FlyBase.::GO:0032154; C:cleavage furrow; IEA:UniProtKB-SubCell.::GO:0045169; C:fusome; IDA:FlyBase.::GO:0045172; C:germline ring canal; IDA:FlyBase.::GO:0030426; C:growth cone; IEA:UniProtKB-SubCell.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0005634; C:nucleus; IDA:FlyBase.::GO:0005827; C:polar microtubule; IDA:FlyBase.
GO:0005525; F:GTP binding; IDA:FlyBase.::GO:0008017; F:microtubule binding; IDA:FlyBase.
GO:0051315; P:attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation; IMP:FlyBase.::GO:0007411; P:axon guidance; IMP:FlyBase.::GO:0007282; P:cystoblast division; IMP:FlyBase.::GO:0040001; P:establishment of mitotic spindle localization; IMP:FlyBase.::GO:0035099; P:hemocyte migration; IMP:FlyBase.::GO:0000022; P:mitotic spindle elongation; IMP:FlyBase.::GO:0043148; P:mitotic spindle stabilization; IMP:FlyBase.::GO:0016325; P:oocyte microtubule cytoskeleton organization; IMP:FlyBase.::GO:0030723; P:ovarian fusome organization; IMP:FlyBase.::GO:0046602; P:regulation of mitotic centrosome separation; IMP:FlyBase.::GO:0051225; P:spindle assembly; IMP:FlyBase.::GO:0019827; P:stem cell maintenance; IMP:FlyBase.
24Q751B2    775   EBS1_ASHGO Protein EBS1 OS=Y-1056) (Yeast) (E...1855.2     34.3     29     35GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
25Q8N729    165   NPW_HUMAN Neuropeptide W OS=Homo sapiens (Hum...1015.9     33.1     29     46GO:0005576; C:extracellular region; TAS:Reactome.
GO:0007631; P:feeding behavior; IDA:HGNC.::GO:0007218; P:neuropeptide signaling pathway; IEA:UniProtKB-KW.
26O00267    1087   SPT5H_HUMAN Transcription elongation factor S...1076.9     33.9     28     39GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0019899; F:enzyme binding; IPI:UniProtKB.::GO:0046982; F:protein heterodimerization activity; IPI:UniProtKB.
GO:0007049; P:cell cycle; NAS:UniProtKB.::GO:0006338; P:chromatin remodeling; NAS:UniProtKB.::GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0032785; P:negative regulation of transcription elongation, DNA-dependent; IDA:UniProtKB.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IEA:InterPro.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0010033; P:response to organic substance; TAS:UniProtKB.::GO:0045090; P:retroviral genome replication; NAS:UniProtKB.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IDA:UniProtKB.
27Q96R06    1193   SPAG5_HUMAN Sperm-associated antigen 5 OS=Hom...1087.6     33.9     25     53GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0035371; C:microtubule plus end; IDA:UniProtKB.::GO:0072686; C:mitotic spindle; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:HPA.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000090; P:mitotic anaphase; IMP:UniProtKB.::GO:0000070; P:mitotic sister chromatid segregation; IMP:UniProtKB.::GO:0048015; P:phosphatidylinositol-mediated signaling; NAS:UniProtKB.::GO:0051988; P:regulation of attachment of spindle microtubules to kinetochore; IMP:UniProtKB.::GO:0007051; P:spindle organization; IMP:UniProtKB.
28O55201    1082   SPT5H_MOUSE Transcription elongation factor S...1078.1     33.9     28     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IDA:MGI.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IEA:InterPro.
29Q5R405    1083   SPT5H_PONAB Transcription elongation factor S...1079.3     33.5     28     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
30Q99ML9    989   RN111_MOUSE E3 ubiquitin-protein ligase Arkad...739.8     33.5     37     47GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0005634; C:nucleus; IDA:BHF-UCL.::GO:0043234; C:protein complex; IDA:MGI.
GO:0004842; F:ubiquitin-protein ligase activity; IMP:BHF-UCL.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007389; P:pattern specification process; IMP:MGI.::GO:0031398; P:positive regulation of protein ubiquitination; IDA:MGI.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:BHF-UCL.::GO:0030511; P:positive regulation of transforming growth factor beta receptor signaling pathway; IDA:MGI.::GO:0000209; P:protein polyubiquitination; IMP:BHF-UCL.::GO:0030579; P:ubiquitin-dependent SMAD protein catabolic process; IMP:BHF-UCL.
31Q63638    3259   SPEG_RAT Striated muscle-specific serine/thre...1519.9     33.5     23     36GO:0005634; C:nucleus; IDA:RGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0042692; P:muscle cell differentiation; IEP:RGD.
records
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