Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YCR052W
Length:
483
Number of sequences:
5887
Description:
YCR052W RSC6 SGDID:S000000648, Chr III from 214994-216445, Genome Release 64-1-1, Verified ORF, "Component of the RSC chromatin remodeling complex; essential for mitotic growth; homolog of SWI/SNF subunit Swp73p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P25632    483   RSC6_YEAST Chromatin structure-remodeling com...4830     988     100     100GO:0016586; C:RSC complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0043044; P:ATP-dependent chromatin remodeling; IDA:UniProtKB.::GO:0000086; P:G2/M transition of mitotic cell cycle; IMP:SGD.::GO:0006337; P:nucleosome disassembly; IDA:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
2P53628    566   SNF12_YEAST Transcription regulatory protein ...5382e-54     196     30     50GO:0016514; C:SWI/SNF complex; IMP:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0061412; P:positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3Q9FMT4    534   SNF12_ARATH SWI/SNF complex component SNF12 h...4490.000000000004     71.6     22     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010224; P:response to UV-B; IEP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6P9Z1    483   SMRD3_MOUSE SWI/SNF-related matrix-associated...3370.0000000001     67     21     36GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.
GO:0003219; P:cardiac right ventricle formation; IMP:MGI.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0042692; P:muscle cell differentiation; IMP:MGI.::GO:0003407; P:neural retina development; IEP:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:MGI.::GO:0043393; P:regulation of protein binding; IDA:MGI.::GO:0003139; P:secondary heart field specification; IMP:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q6STE5    483   SMRD3_HUMAN SWI/SNF-related matrix-associated...3370.0000000001     67     21     36GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0000790; C:nuclear chromatin; IDA:BHF-UCL.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005634; C:nucleus; IDA:BHF-UCL.::GO:0016514; C:SWI/SNF complex; NAS:UniProtKB.
GO:0016922; F:ligand-dependent nuclear receptor binding; IPI:BHF-UCL.::GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; IMP:BHF-UCL.::GO:0035257; F:nuclear hormone receptor binding; IPI:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.::GO:0008134; F:transcription factor binding; IPI:UniProtKB.
GO:0044255; P:cellular lipid metabolic process; TAS:Reactome.::GO:0006338; P:chromatin remodeling; IDA:BHF-UCL.::GO:0003407; P:neural retina development; IEP:BHF-UCL.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0002052; P:positive regulation of neuroblast proliferation; IDA:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:BHF-UCL.::GO:0044281; P:small molecule metabolic process; TAS:Reactome.::GO:0006351; P:transcription, DNA-dependent; IDA:UniProtKB.
6Q9P7S3    425   SSR3_SCHPO SWI/SNF and RSC complexes subunit ...4850.000000001     63.9     20     37GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0016586; C:RSC complex; IDA:PomBase.::GO:0016514; C:SWI/SNF complex; IDA:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.
GO:0006338; P:chromatin remodeling; ISS:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IC:PomBase.
7Q92925    531   SMRD2_HUMAN SWI/SNF-related matrix-associated...2430.000000003     62.8     25     39GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0003713; F:transcription coactivator activity; NAS:UniProtKB.
GO:0006338; P:chromatin remodeling; IDA:BHF-UCL.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q99JR8    531   SMRD2_MOUSE SWI/SNF-related matrix-associated...2440.000000005     62     25     39
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9O54772    531   SMRD2_RAT SWI/SNF-related matrix-associated a...2440.000000006     62     25     39
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q96GM5    515   SMRD1_HUMAN SWI/SNF-related matrix-associated...3440.000000009     61.2     20     36GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0032947; F:protein complex scaffold; IDA:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.
GO:0048096; P:chromatin-mediated maintenance of transcription; IMP:UniProtKB.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:BHF-UCL.
11Q61466    515   SMRD1_MOUSE SWI/SNF-related matrix-associated...3440.00000002     60.5     20     36GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.
GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
12Q2TBN1    515   SMRD1_BOVIN SWI/SNF-related matrix-associated...3470.00000003     59.7     20     35GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
13E1BJD1    531   SMRD2_BOVIN SWI/SNF-related matrix-associated...2450.000005     52.8     24     38
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
14Q556Z0    456   SNF12_DICDI SWI/SNF complex component SNF12 h...2670.03     40.4     21     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q8C633    391   CABS1_MOUSE Calcium-binding and spermatid-spe...439.8     32.3     44     65GO:0019861; C:flagellum; IDA:UniProtKB.
GO:0005509; F:calcium ion binding; IDA:UniProtKB.
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