Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YBR089C-A
Length:
99
Number of sequences:
5887
Description:
YBR089C-A NHP6B SGDID:S000002157, Chr II from 426489-426190, Genome Release 64-1-1, reverse complement, Verified ORF, "High-mobility group (HMG) protein that binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; homologous to mammalian HMGB1 and HMGB2"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P11633    99   NHP6B_YEAST Non-histone chromosomal protein 6...993e-66     201     100     100GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:SGD.
GO:0008301; F:DNA binding, bending; IDA:SGD.::GO:0031491; F:nucleosome binding; ISS:SGD.::GO:0043565; F:sequence-specific DNA binding; IDA:SGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0070898; P:RNA polymerase III transcriptional preinitiation complex assembly; IDA:SGD.::GO:0006366; P:transcription from RNA polymerase II promoter; IGI:SGD.
2P11632    93   NHP6A_YEAST Non-histone chromosomal protein 6...906e-47     151     89     96GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:SGD.
GO:0008301; F:DNA binding, bending; IDA:SGD.::GO:0031491; F:nucleosome binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0043565; F:sequence-specific DNA binding; IDA:SGD.
GO:0034724; P:DNA replication-independent nucleosome organization; IDA:SGD.::GO:0006298; P:mismatch repair; IC:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IDA:SGD.::GO:0070898; P:RNA polymerase III transcriptional preinitiation complex assembly; IDA:SGD.
3Q6CVH3    93   NHP6_KLULA Non-histone chromosomal protein 6 ...872e-46     150     80     92GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q75B82    94   NHP6_ASHGO Non-histone chromosomal protein 6 ...773e-43     142     82     96GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q4WY33    104   NHP6_ASPFU Non-histone chromosomal protein 6 ...821e-39     133     76     85GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q7S045    103   NHP6_NEUCR Non-histone chromosomal protein 6 ...783e-37     127     76     87GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7Q4IQX3    101   NHP6_GIBZE Non-histone chromosomal protein 6 ...801e-36     125     73     85GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q5B995    106   NHP6_EMENI Non-histone chromosomal protein 6 ...811e-36     125     70     85GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9Q9UVL1    92   NHP6_CANAL Non-histone chromosomal protein 6 ...726e-35     120     75     90GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IDA:CGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q6BRB4    92   NHP6_DEBHA Non-histone chromosomal protein 6 ...722e-34     119     75     88GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11Q6CC79    103   NHP6_YARLI Non-histone chromosomal protein 6 ...952e-33     117     63     76GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12P87057    108   NHP6_SCHPO Non-histone chromosomal protein 6 ...875e-29     106     54     78GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; ISS:PomBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006338; P:chromatin remodeling; ISS:PomBase.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006334; P:nucleosome assembly; ISS:PomBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:PomBase.::GO:0006359; P:regulation of transcription from RNA polymerase III promoter; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13P0CO24    116   NHP6_CRYNJ Non-histone chromosomal protein 6 ...951e-23     92.8     49     72GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
14P0CO25    116   NHP6_CRYNB Non-histone chromosomal protein 6 ...951e-23     92.8     49     72GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15O04235    642   SSRP1_VICFA FACT complex subunit SSRP1 OS=Vic...723e-23     97.4     60     78GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16Q4PBZ9    99   NHP6_USTMA Non-histone chromosomal protein 6 ...855e-22     87.8     54     73GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17P40632    97   NHP1_BABBO High mobility group protein homolo...821e-19     82     49     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
18Q55C24    141   NHP6_DICDI Non-histone chromosomal protein 6 ...734e-18     78.6     42     75GO:0000790; C:nuclear chromatin; ISS:dictyBase.
GO:0003682; F:chromatin binding; ISS:dictyBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006325; P:chromatin organization; ISS:dictyBase.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:dictyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q09390    235   HMG12_CAEEL High mobility group protein 1.2 O...690.26     32.7     33     54GO:0005634; C:nucleus; IDA:WormBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0001708; P:cell fate specification; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040018; P:positive regulation of multicellular organism growth; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0040025; P:vulval development; IMP:WormBase.::GO:0016055; P:Wnt receptor signaling pathway; IGI:WormBase.
20P07746    204   HMGT_ONCMY High mobility group-T protein OS=O...750.00000003     52     36     57GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
21Q24537    393   HMG2_DROME High mobility group protein DSP1 O...700.000002     48.9     34     59GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0005700; C:polytene chromosome; IDA:FlyBase.
GO:0008301; F:DNA binding, bending; IDA:FlyBase.::GO:0003697; F:single-stranded DNA binding; NAS:UniProtKB.::GO:0017025; F:TBP-class protein binding; IPI:FlyBase.
GO:0006338; P:chromatin remodeling; IMP:FlyBase.::GO:0006268; P:DNA unwinding involved in replication; NAS:UniProtKB.::GO:0035218; P:leg disc development; IMP:FlyBase.::GO:0008348; P:negative regulation of antimicrobial humoral response; IMP:FlyBase.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; IDA:FlyBase.::GO:0043388; P:positive regulation of DNA binding; IDA:FlyBase.::GO:0007379; P:segment specification; IMP:FlyBase.
22Q6DIJ5    345   HM20A_XENTR High mobility group protein 20A O...810.000000000000003     73.2     46     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
23P40644    200   HMGH_STRPU High mobility group protein 1 homo...780.0005     40.8     29     53GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
24Q6AZF8    345   HM20A_XENLA High mobility group protein 20A O...810.000000000000003     73.2     46     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
25Q05153    646   SSRP1_ARATH FACT complex subunit SSRP1 OS=Ara...940.00000000000001     72.8     39     68GO:0035101; C:FACT complex; IDA:TAIR.::GO:0005719; C:nuclear euchromatin; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
26P07156    180   HMGB1_CRIGR High mobility group protein B1 OS...430.0003     40.8     44     63GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:UniProtKB.
27P63159    215   HMGB1_RAT High mobility group protein B1 OS=R...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:RGD.::GO:0005615; C:extracellular space; IDA:RGD.::GO:0005634; C:nucleus; IDA:RGD.
GO:0008097; F:5S rRNA binding; IDA:RGD.::GO:0003681; F:bent DNA binding; IDA:MGI.::GO:0000402; F:crossed form four-way junction DNA binding; IDA:MGI.::GO:0005125; F:cytokine activity; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:RGD.::GO:0003690; F:double-stranded DNA binding; IDA:RGD.::GO:0051861; F:glycolipid binding; IDA:RGD.::GO:0008201; F:heparin binding; IDA:RGD.::GO:0000401; F:open form four-way junction DNA binding; IDA:MGI.::GO:0042277; F:peptide binding; IDA:RGD.::GO:0046983; F:protein dimerization activity; IDA:RGD.::GO:0050786; F:RAGE receptor binding; IPI:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:RGD.::GO:0008134; F:transcription factor binding; IDA:RGD.
GO:0031532; P:actin cytoskeleton reorganization; IMP:RGD.::GO:0000902; P:cell morphogenesis; IMP:RGD.::GO:0071347; P:cellular response to interleukin-1; IEP:RGD.::GO:0006935; P:chemotaxis; IDA:RGD.::GO:0007623; P:circadian rhythm; IEP:RGD.::GO:0032392; P:DNA geometric change; IDA:MGI.::GO:0050930; P:induction of positive chemotaxis; IDA:MGI.::GO:0050831; P:male-specific defense response to bacterium; IDA:RGD.::GO:0051450; P:myoblast proliferation; IMP:RGD.::GO:0008156; P:negative regulation of DNA replication; IDA:RGD.::GO:0031175; P:neuron projection development; IGI:UniProtKB.::GO:0002053; P:positive regulation of mesenchymal cell proliferation; IDA:MGI.::GO:0045931; P:positive regulation of mitotic cell cycle; IDA:MGI.::GO:0033034; P:positive regulation of myeloid cell apoptotic process; IDA:RGD.::GO:0045663; P:positive regulation of myoblast differentiation; IMP:RGD.::GO:0010976; P:positive regulation of neuron projection development; IMP:RGD.::GO:0014911; P:positive regulation of smooth muscle cell migration; IMP:RGD.::GO:0050727; P:regulation of inflammatory response; IDA:RGD.::GO:0042493; P:response to drug; IEP:RGD.::GO:0009749; P:response to glucose stimulus; IEP:RGD.::GO:0009408; P:response to heat; IEP:RGD.::GO:0032868; P:response to insulin stimulus; IEP:RGD.::GO:0034341; P:response to interferon-gamma; IMP:RGD.::GO:0032496; P:response to lipopolysaccharide; IEP:RGD.
28A9RA84    215   HMGB1_PAPAN High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
29P63158    215   HMGB1_MOUSE High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005615; C:extracellular space; IDA:MGI.::GO:0043005; C:neuron projection; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:MGI.
GO:0010858; F:calcium-dependent protein kinase regulator activity; IDA:MGI.::GO:0005125; F:cytokine activity; IDA:MGI.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008201; F:heparin binding; IEA:UniProtKB-KW.::GO:0001786; F:phosphatidylserine binding; TAS:BHF-UCL.::GO:0030295; F:protein kinase activator activity; IDA:MGI.
GO:0001654; P:eye development; IMP:MGI.::GO:0006954; P:inflammatory response; TAS:BHF-UCL.::GO:0030324; P:lung development; IMP:MGI.::GO:2000426; P:negative regulation of apoptotic cell clearance; IDA:BHF-UCL.::GO:0045819; P:positive regulation of glycogen catabolic process; IMP:MGI.::GO:0045639; P:positive regulation of myeloid cell differentiation; IDA:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:MGI.::GO:0051384; P:response to glucocorticoid stimulus; IMP:MGI.
30Q4R844    215   HMGB1_MACFA High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
31P09429    215   HMGB1_HUMAN High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0009986; C:cell surface; IDA:UniProtKB.::GO:0000793; C:condensed chromosome; IDA:UniProtKB.::GO:0005615; C:extracellular space; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0042056; F:chemoattractant activity; ISS:UniProtKB.::GO:0005125; F:cytokine activity; ISS:UniProtKB.::GO:0003684; F:damaged DNA binding; ISS:UniProtKB.::GO:0008301; F:DNA binding, bending; IMP:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.::GO:0050786; F:RAGE receptor binding; ISS:UniProtKB.::GO:0070491; F:repressing transcription factor binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; IDA:UniProtKB.::GO:0002407; P:dendritic cell chemotaxis; ISS:UniProtKB.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; TAS:Reactome.::GO:0006265; P:DNA topological change; ISS:UniProtKB.::GO:0002437; P:inflammatory response to antigenic stimulus; IEP:UniProtKB.::GO:0045087; P:innate immune response; TAS:Reactome.::GO:0001773; P:myeloid dendritic cell activation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; IDA:UniProtKB.::GO:0031175; P:neuron projection development; ISS:UniProtKB.::GO:0043065; P:positive regulation of apoptotic process; IDA:UniProtKB.::GO:0043280; P:positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; IDA:UniProtKB.::GO:0043388; P:positive regulation of DNA binding; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
records
Previous ‹‹ ›› Next Total records: 448 1 - 30
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::