Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YBR089C-A
Length:
99
Number of sequences:
5887
Description:
YBR089C-A NHP6B SGDID:S000002157, Chr II from 426489-426190, Genome Release 64-1-1, reverse complement, Verified ORF, "High-mobility group (HMG) protein that binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; homologous to mammalian HMGB1 and HMGB2"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31P09429    215   HMGB1_HUMAN High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0009986; C:cell surface; IDA:UniProtKB.::GO:0000793; C:condensed chromosome; IDA:UniProtKB.::GO:0005615; C:extracellular space; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0042056; F:chemoattractant activity; ISS:UniProtKB.::GO:0005125; F:cytokine activity; ISS:UniProtKB.::GO:0003684; F:damaged DNA binding; ISS:UniProtKB.::GO:0008301; F:DNA binding, bending; IMP:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.::GO:0050786; F:RAGE receptor binding; ISS:UniProtKB.::GO:0070491; F:repressing transcription factor binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; IDA:UniProtKB.::GO:0002407; P:dendritic cell chemotaxis; ISS:UniProtKB.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; TAS:Reactome.::GO:0006265; P:DNA topological change; ISS:UniProtKB.::GO:0002437; P:inflammatory response to antigenic stimulus; IEP:UniProtKB.::GO:0045087; P:innate immune response; TAS:Reactome.::GO:0001773; P:myeloid dendritic cell activation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; IDA:UniProtKB.::GO:0031175; P:neuron projection development; ISS:UniProtKB.::GO:0043065; P:positive regulation of apoptotic process; IDA:UniProtKB.::GO:0043280; P:positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; IDA:UniProtKB.::GO:0043388; P:positive regulation of DNA binding; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
32Q08IE6    215   HMGB1_HORSE High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
33Q6YKA4    215   HMGB1_CANFA High mobility group protein B1 OS...760.0000000002     58.2     39     59
34B1MTB0    215   HMGB1_CALMO High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
35B0CM99    215   HMGB1_CALJA High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
36P10103    215   HMGB1_BOVIN High mobility group protein B1 OS...760.0000000002     58.2     39     59GO:0000793; C:condensed chromosome; ISS:AgBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0042056; F:chemoattractant activity; IDA:UniProtKB.::GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.::GO:0042393; F:histone binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:AgBase.::GO:0006338; P:chromatin remodeling; NAS:UniProtKB.::GO:0002407; P:dendritic cell chemotaxis; IDA:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0001773; P:myeloid dendritic cell activation; IDA:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:AgBase.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
37P40618    202   HMGB3_CHICK High mobility group protein B3 OS...660.0000009     48.1     36     61GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
38O54879    200   HMGB3_MOUSE High mobility group protein B3 OS...660.0000005     48.5     36     61GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045578; P:negative regulation of B cell differentiation; IDA:MGI.::GO:0045638; P:negative regulation of myeloid cell differentiation; IDA:MGI.
39O49595    178   HMGB1_ARATH High mobility group B protein 1 O...880.0000000000001     67.4     43     58GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
40P26584    207   HMGB2_CHICK High mobility group protein B2 OS...760.0000000009     56.2     37     59GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
41P12682    215   HMGB1_PIG High mobility group protein B1 OS=S...760.0000000002     58.2     39     59GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0017055; P:negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; ISS:UniProtKB.
42P0C6E5    187   HMG3M_HUMAN Putative high mobility group prot...710.00002     44.7     32     52GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
43P36194    201   HMGB1_CHICK High mobility group protein B1 OS...660.00003     43.9     36     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
44Q32L31    200   HMGB3_BOVIN High mobility group protein B3 OS...670.0000007     48.5     36     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.
GO:0006310; P:DNA recombination; IDA:UniProtKB.
45O15347    200   HMGB3_HUMAN High mobility group protein B3 OS...670.0000007     48.5     36     58GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0007275; P:multicellular organismal development; TAS:ProtInc.
46Q9DC33    346   HM20A_MOUSE High mobility group protein 20A O...780.0000000000002     68.2     45     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
47Q9NP66    347   HM20A_HUMAN High mobility group protein 20A O...780.0000000000002     68.2     45     62GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003677; F:DNA binding; NAS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
48P26583    209   HMGB2_HUMAN High mobility group protein B2 OS...760.0000000001     58.9     38     61GO:0000793; C:condensed chromosome; IDA:UniProtKB.::GO:0005615; C:extracellular space; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.::GO:0043234; C:protein complex; IDA:UniProtKB.
GO:0042056; F:chemoattractant activity; IDA:UniProtKB.::GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; ISS:UniProtKB.::GO:0050786; F:RAGE receptor binding; IGI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.::GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; IDA:UniProtKB.::GO:0060326; P:cell chemotaxis; IDA:UniProtKB.::GO:0071222; P:cellular response to lipopolysaccharide; IEP:UniProtKB.::GO:0006309; P:DNA fragmentation involved in apoptotic nuclear change; TAS:Reactome.::GO:0006265; P:DNA topological change; ISS:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:BHF-UCL.::GO:0006334; P:nucleosome assembly; NAS:UniProtKB.::GO:0048015; P:phosphatidylinositol-mediated signaling; NAS:UniProtKB.::GO:0043388; P:positive regulation of DNA binding; IDA:UniProtKB.::GO:0001938; P:positive regulation of endothelial cell proliferation; IDA:UniProtKB.::GO:0045648; P:positive regulation of erythrocyte differentiation; IMP:UniProtKB.::GO:0045654; P:positive regulation of megakaryocyte differentiation; IMP:UniProtKB.::GO:0032075; P:positive regulation of nuclease activity; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; ISS:UniProtKB.
49P40673    209   HMGB2_BOVIN High mobility group protein B2 OS...760.0000000001     58.9     38     61GO:0000793; C:condensed chromosome; ISS:AgBase.::GO:0048471; C:perinuclear region of cytoplasm; ISS:AgBase.
GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0008301; F:DNA binding, bending; IDA:UniProtKB.::GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.::GO:0042393; F:histone binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:AgBase.::GO:0006338; P:chromatin remodeling; NAS:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0033151; P:V(D)J recombination; IDA:UniProtKB.
50P52925    210   HMGB2_RAT High mobility group protein B2 OS=R...760.0000000002     58.5     38     61GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.::GO:0005625; C:soluble fraction; IDA:RGD.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0003690; F:double-stranded DNA binding; TAS:RGD.::GO:0008289; F:lipid binding; IDA:RGD.::GO:0031493; F:nucleosomal histone binding; IDA:RGD.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0007049; P:cell cycle; IEP:RGD.::GO:0007399; P:nervous system development; IDA:RGD.::GO:0031100; P:organ regeneration; IEP:RGD.::GO:0051054; P:positive regulation of DNA metabolic process; IMP:RGD.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:RGD.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
51Q5ZKF4    348   HM20A_CHICK High mobility group protein 20A O...1030.0000000000005     67     41     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
52P30681    210   HMGB2_MOUSE High mobility group protein B2 OS...760.0000000002     58.2     38     61GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; ISS:UniProtKB.::GO:0019904; F:protein domain specific binding; IPI:MGI.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0008584; P:male gonad development; IMP:MGI.::GO:0043388; P:positive regulation of DNA binding; IDA:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:MGI.::GO:0048545; P:response to steroid hormone stimulus; IMP:MGI.::GO:0007289; P:spermatid nucleus differentiation; IMP:MGI.
53P17741    210   HMGB2_PIG High mobility group protein B2 OS=S...760.0000000001     58.9     38     61GO:0000793; C:condensed chromosome; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0008301; F:DNA binding, bending; IDA:UniProtKB.
GO:0006288; P:base-excision repair, DNA ligation; ISS:UniProtKB.::GO:0006265; P:DNA topological change; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
54Q6IRR0    594   TOX4B_XENLA TOX high mobility group box famil...760.000000000002     66.6     39     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
55B2RPK0    211   HGB1A_HUMAN Putative high mobility group prot...760.00000008     51.2     36     55GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
56Q04678    706   SSRP1_CHICK FACT complex subunit SSRP1 OS=Gal...910.000000000002     66.6     41     64GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
57A4QNP0    597   TOX4_XENTR TOX high mobility group box family...760.000000000002     66.6     39     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
58Q6DJL0    597   TOX4A_XENLA TOX high mobility group box famil...760.000000000003     66.2     39     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
59Q196Z2    201   VF401_IIV3 High mobility group protein homolo...580.093     34.3     31     52GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
60Q08943    708   SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus...1010.000000000008     64.7     35     59GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
61Q9W602    693   SSRP1_XENLA FACT complex subunit SSRP1 OS=Xen...910.000000000009     64.7     36     63GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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