Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YBR055C
Length:
899
Number of sequences:
5887
Description:
YBR055C PRP6 SGDID:S000000259, Chr II from 347301-344602, Genome Release 64-1-1, reverse complement, Verified ORF, "Splicing factor, component of the U4/U6-U5 snRNP complex"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31P14922    966   CYC8_YEAST General transcriptional corepresso...2870.22     38.9     21     36GO:0017053; C:transcriptional repressor complex; IDA:SGD.
GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0001190; F:RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription; IDA:SGD.
GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD.
32Q9FNS4    662   MBB1_CHLRE PsbB mRNA maturation factor Mbb1, ...1961.4     36.2     22     38GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
33Q6FW76    695   CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=N...830.4     38.1     28     53GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
34Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...2360.4     38.1     23     45GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
35Q12309    687   CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=S...1061.5     36.2     25     49GO:0000785; C:chromatin; IDA:SGD.::GO:0000974; C:Prp19 complex; IDA:SGD.::GO:0071006; C:U2-type catalytic step 1 spliceosome; IDA:SGD.::GO:0071007; C:U2-type catalytic step 2 spliceosome; IDA:SGD.::GO:0071008; C:U2-type post-mRNA release spliceosomal complex; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0003688; F:DNA replication origin binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0000354; P:cis assembly of pre-catalytic spliceosome; IMP:SGD.::GO:0006270; P:DNA-dependent DNA replication initiation; IMP:SGD.
36Q9FMA3    728   PEX5_ARATH Peroxisome biogenesis protein 5 OS...1351.5     36.2     24     41GO:0005778; C:peroxisomal membrane; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.
GO:0006625; P:protein targeting to peroxisome; IGI:TAIR.::GO:0009733; P:response to auxin stimulus; IMP:TAIR.
37Q8NBP0    860   TTC13_HUMAN Tetratricopeptide repeat protein ...1391.5     36.2     24     47
GO:0005488; F:binding; IEA:InterPro.
38Q9U650    75   CO142_CONTE Omega-conotoxin-like TxMKLT1-0142...521.8     33.1     40     58GO:0072556; C:other organism presynaptic membrane; IEA:UniProtKB-KW.
GO:0019855; F:calcium channel inhibitor activity; IEA:UniProtKB-KW.
GO:0009405; P:pathogenesis; IEA:InterPro.
39O83890    809   Y920_TREPA TPR repeat-containing protein TP_0...1582     35.8     22     41
GO:0005488; F:binding; IEA:InterPro.
40Q4KLU2    641   PRP39_XENLA Pre-mRNA-processing factor 39 OS=...1372.6     35.4     25     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
41Q7MNJ0    700   PPK_VIBVY Polyphosphate kinase OS=Vibrio vuln...1143.4     35     30     51GO:0009358; C:polyphosphate kinase complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008976; F:polyphosphate kinase activity; IEA:EC.
GO:0006799; P:polyphosphate biosynthetic process; IEA:InterPro.
42Q8DEW2    700   PPK_VIBVU Polyphosphate kinase OS=Vibrio vuln...1143.5     35     30     51GO:0009358; C:polyphosphate kinase complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008976; F:polyphosphate kinase activity; IEA:EC.
GO:0006799; P:polyphosphate biosynthetic process; IEA:InterPro.
43Q54WN5    609   UTP6_DICDI U3 small nucleolar RNA-associated ...654.6     34.7     31     46GO:0005813; C:centrosome; IDA:dictyBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.
GO:0030515; F:snoRNA binding; ISS:dictyBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:dictyBase.
44Q6NS46    1862   RRP5_MOUSE Protein RRP5 homolog OS=Mus muscul...1154.7     34.7     28     46GO:0005829; C:cytosol; IDA:MGI.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006915; P:apoptotic process; TAS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; TAS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
45Q9DE68    356   PGS2_COTJA Decorin OS=Coturnix coturnix japon...984.9     34.3     22     48GO:0005578; C:proteinaceous extracellular matrix; IEA:UniProtKB-SubCell.
46Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...2385.7     34.3     21     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
47Q9KQ40    484   Y2164_VIBCH TPR repeat-containing protein VC_...896.5     33.9     28     53GO:0016020; C:membrane; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:InterPro.
48Q9XSD9    360   PGS2_PIG Decorin OS=Sus scrofa (Pig). GN=DCN ...988.4     33.5     21     48GO:0005578; C:proteinaceous extracellular matrix; IEA:UniProtKB-SubCell.
records
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