Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YBR055C
Length:
899
Number of sequences:
5887
Description:
YBR055C PRP6 SGDID:S000000259, Chr II from 347301-344602, Genome Release 64-1-1, reverse complement, Verified ORF, "Splicing factor, component of the U4/U6-U5 snRNP complex"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P19735    899   PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Sacc...8990     1853     100     100GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
2Q12381    906   PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=S...9486e-103     347     27     48GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase.
3O94906    941   PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Ho...9603e-91     315     27     46GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:BHF-UCL.::GO:0005682; C:U5 snRNP; IDA:BHF-UCL.
GO:0050681; F:androgen receptor binding; IPI:MGI.::GO:0043021; F:ribonucleoprotein complex binding; IDA:BHF-UCL.::GO:0003713; F:transcription coactivator activity; IGI:MGI.
GO:0000244; P:assembly of spliceosomal tri-snRNP; IMP:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.
4A1A5S1    941   PRP6_RAT Pre-mRNA-processing factor 6 OS=Ratt...9674e-91     315     27     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
5Q91YR7    941   PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mu...9677e-91     314     27     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
6Q2KJJ0    941   PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bo...9677e-91     314     27     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
7Q5RCC2    941   PRP6_PONAB Pre-mRNA-processing factor 6 OS=Po...9601e-88     308     27     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
8Q9HF03    724   CLF1_CRYNV Pre-mRNA-splicing factor CLF1 OS=g...1171.2     36.6     25     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9P0CO10    726   CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=A...1171.3     36.6     25     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10P0CO11    726   CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=(...1171.3     36.6     25     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11Q9BZJ0    848   CRNL1_HUMAN Crooked neck-like protein 1 OS=Ho...1732.2     35.8     22     42GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; IDA:UniProtKB.
12Q4PB37    781   CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=U...1360.15     39.7     26     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
13Q6C186    676   CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=l...851.2     36.6     25     46GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
14P63155    690   CRNL1_RAT Crooked neck-like protein 1 OS=Ratt...1254.7     34.7     24     45
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
15P63154    690   CRNL1_MOUSE Crooked neck-like protein 1 OS=Mu...1254.7     34.7     24     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
16Q4WT84    676   CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=A...1580.36     38.1     23     43GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17Q527H0    691   CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=b...1962     35.8     27     41GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
18Q54XP4    705   CRNL1_DICDI Crooked neck-like protein 1 OS=Di...583.8     35     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
19Q7SGD2    695   CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=...1100.045     41.2     25     45GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
20P17886    702   CRN_DROME Protein crooked neck OS=Drosophila ...1420.71     37.4     27     45GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005813; C:centrosome; IDA:FlyBase.::GO:0072686; C:mitotic spindle; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0008366; P:axon ensheathment; IMP:FlyBase.::GO:0051298; P:centrosome duplication; IMP:FlyBase.::GO:0008347; P:glial cell migration; IMP:FlyBase.::GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0007438; P:oenocyte development; IMP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
21Q5K654    677   CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=P...5700.021     42.4     20     38GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22Q58741    314   Y1345_METJA TPR repeat-containing protein MJ1...2704.4     34.3     21     41
GO:0005488; F:binding; IEA:InterPro.
23Q5BDX1    673   CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=1...1192.6     35.4     24     43GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24Q5AED6    758   CLF1_CANAL Pre-mRNA-splicing factor CLF1 OS=C...540.03     41.6     41     57GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
25Q1JPZ7    752   PRP39_DANRE Pre-mRNA-processing factor 39 OS=...1350.035     41.6     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
26Q02354    440   UTP6_YEAST U3 small nucleolar RNA-associated ...1400.051     40.8     26     44GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
27Q54VF4    1304   Y8236_DICDI TPR-containing protein DDB_G02803...1982.2     35.8     22     40GO:0005622; C:intracellular; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.
GO:0006396; P:RNA processing; IEA:InterPro.
28P87312    674   CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=S...685.5     34.3     26     53GO:0005681; C:spliceosomal complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase.
29Q6CJK2    684   CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=1...820.53     37.7     29     49GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
30Q750X3    683   CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Y...820.59     37.4     23     51GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
31P14922    966   CYC8_YEAST General transcriptional corepresso...2870.22     38.9     21     36GO:0017053; C:transcriptional repressor complex; IDA:SGD.
GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0001190; F:RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription; IDA:SGD.
GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD.
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