Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YBR012W-B
Length:
1756
Number of sequences:
5887
Description:
YBR012W-B YBR012W-B SGDID:S000002155, Chr II from 259869-261173,261175-265140, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P0CX74    440   YJ11A_YEAST Transposon Ty1-JR1 Gag polyprotei...4350     880     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
62O74302    440   YD13A_YEAST Transposon Ty1-DR4 Gag polyprotei...4350     880     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
63Q6Q5H1    440   YP14A_YEAST Transposon Ty1-PR3 Gag polyprotei...4350     879     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
64P08405    440   TY1A_YEASX Transposon TyH3 Gag polyprotein OS...4350     876     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
65P0CX73    440   YP11A_YEAST Transposon Ty1-PL Gag polyprotein...4350     875     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
66P0CX72    440   YL12A_YEAST Transposon Ty1-LR2 Gag polyprotei...4350     875     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
67P0CX71    440   YE11A_YEAST Transposon Ty1-ER1 Gag polyprotei...4350     875     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
68P0CX70    440   YD15A_YEAST Transposon Ty1-DR6 Gag polyprotei...4350     875     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
69P0C2I4    478   YH11A_YEAST Transposon Ty1-H Gag polyprotein ...4730     874     91     91GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
70P47099    440   YJ12A_YEAST Transposon Ty1-JR2 Gag polyprotei...4350     870     97     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
71P0CX58    440   YP12A_YEAST Transposon Ty1-PR1 Gag polyprotei...4350     865     97     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
72P0CX57    440   YA11A_YEAST Transposon Ty1-A Gag polyprotein ...4350     865     97     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q12085    440   YG11A_YEAST Transposon Ty1-GR1 Gag polyprotei...4350     865     97     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
74Q12470    440   YN12A_YEAST Transposon Ty1-NL2 Gag polyprotei...4350     862     97     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
75Q12391    440   YN11A_YEAST Transposon Ty1-NL1 Gag polyprotei...4350     759     85     89GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
76Q03964    440   YD17A_YEAST Transposon Ty1-DR2 Gag polyprotei...4350     677     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
77Q04215    440   YM13A_YEAST Transposon Ty1-MR1 Gag polyprotei...4350     676     77     84GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
78Q12266    440   YB11A_YEAST Transposon Ty1-BL Gag polyprotein...4350     671     77     83GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
79Q99303    438   YD23A_YEAST Transposon Ty2-DR3 Gag polyprotei...4356e-127     410     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
80P0C2J6    438   YL22A_YEAST Transposon Ty2-LR2 Gag polyprotei...4351e-126     409     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
81Q12260    438   YB21A_YEAST Transposon Ty2-B Gag polyprotein ...4352e-126     409     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
82Q03483    438   YD22A_YEAST Transposon Ty2-DR2 Gag polyprotei...4353e-126     408     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
83P25383    438   YC21A_YEAST Transposon Ty2-C Gag polyprotein ...4354e-126     408     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
84P0CX62    438   YG22A_YEAST Transposon Ty2-GR2 Gag polyprotei...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
85P0CX61    438   YF21A_YEAST Transposon Ty2-F Gag polyprotein ...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
86Q12293    438   YO22A_YEAST Transposon Ty2-OR2 Gag polyprotei...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
87P0C2J4    438   YL21A_YEAST Transposon Ty2-LR1 Gag polyprotei...4352e-125     406     50     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
88P0C2J2    438   YG21A_YEAST Transposon Ty2-GR1 Gag polyprotei...4353e-125     405     50     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
89Q12439    438   YO21A_YEAST Transposon Ty2-OR1 Gag polyprotei...4354e-125     405     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
90Q12392    438   YD21A_YEAST Transposon Ty2-DR1 Gag polyprotei...4361e-124     404     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
91P0C2J7    1802   YH41B_YEAST Transposon Ty4-H Gag-Pol polyprot...2956e-32     140     31     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004523; F:ribonuclease H activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0015074; P:DNA integration; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0032196; P:transposition; IEA:UniProtKB-KW.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 111 61 - 90
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::