Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YAR007C
Length:
621
Number of sequences:
5887
Description:
YAR007C RFA1 SGDID:S000000065, Chr I from 158619-156754, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P22336    621   RFA1_YEAST Replication factor A protein 1 OS=...6210     1292     100     100GO:0000781; C:chromosome, telomeric region; IMP:SGD.::GO:0000794; C:condensed nuclear chromosome; IDA:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005662; C:DNA replication factor A complex; IDA:SGD.
GO:0003690; F:double-stranded DNA binding; IDA:SGD.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0043565; F:sequence-specific DNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
GO:0006268; P:DNA unwinding involved in replication; IDA:SGD.::GO:0000724; P:double-strand break repair via homologous recombination; IGI:SGD.::GO:0045184; P:establishment of protein localization; IPI:SGD.::GO:0030491; P:heteroduplex formation; IDA:SGD.::GO:0006289; P:nucleotide-excision repair; IDA:SGD.::GO:0016567; P:protein ubiquitination; IMP:SGD.::GO:0007131; P:reciprocal meiotic recombination; IMP:SGD.::GO:0000722; P:telomere maintenance via recombination; IGI:SGD.::GO:0007004; P:telomere maintenance via telomerase; IPI:SGD.
2Q92372    609   RFA1_SCHPO Replication factor A protein 1 OS=...6134e-130     402     37     56GO:0000781; C:chromosome, telomeric region; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005662; C:DNA replication factor A complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006269; P:DNA replication, synthesis of RNA primer; ISS:PomBase.::GO:0000724; P:double-strand break repair via homologous recombination; ISS:PomBase.::GO:0000723; P:telomere maintenance; IMP:PomBase.
3Q6NY74    601   RFA1_DANRE Replication protein A 70 kDa DNA-b...6085e-107     342     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0007507; P:heart development; IMP:ZFIN.
4P27694    616   RFA1_HUMAN Replication protein A 70 kDa DNA-b...6235e-105     337     32     55GO:0015629; C:actin cytoskeleton; IDA:HPA.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005662; C:DNA replication factor A complex; IPI:MGI.::GO:0016605; C:PML body; IDA:MGI.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0000075; P:cell cycle checkpoint; TAS:Reactome.::GO:0000730; P:DNA recombinase assembly; TAS:Reactome.::GO:0006271; P:DNA strand elongation involved in DNA replication; TAS:Reactome.::GO:0000082; P:G1/S transition of mitotic cell cycle; TAS:Reactome.::GO:0000216; P:M/G1 transition of mitotic cell cycle; TAS:Reactome.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0006297; P:nucleotide-excision repair, DNA gap filling; TAS:Reactome.::GO:0000084; P:S phase of mitotic cell cycle; TAS:Reactome.::GO:0000722; P:telomere maintenance via recombination; TAS:Reactome.::GO:0032201; P:telomere maintenance via semi-conservative replication; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.
5Q5R7Q4    616   RFA1_PONAB Replication protein A 70 kDa DNA-b...4403e-103     332     38     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
6Q5ZJJ2    614   RFA1_CHICK Replication protein A 70 kDa DNA-b...6274e-101     327     33     55
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0000724; P:double-strand break repair via homologous recombination; TAS:Reactome.
7Q8VEE4    623   RFA1_MOUSE Replication protein A 70 kDa DNA-b...5939e-98     318     32     55GO:0000794; C:condensed nuclear chromosome; IDA:MGI.::GO:0001673; C:male germ cell nucleus; IDA:MGI.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0051276; P:chromosome organization; IMP:MGI.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0000724; P:double-strand break repair via homologous recombination; IMP:MGI.::GO:0030097; P:hemopoiesis; IMP:MGI.::GO:0048873; P:homeostasis of number of cells within a tissue; IMP:MGI.::GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0007126; P:meiosis; IDA:MGI.::GO:0008284; P:positive regulation of cell proliferation; IMP:MGI.
8Q5FW17    609   RFA1_XENTR Replication protein A 70 kDa DNA-b...4232e-94     308     37     62GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
9Q01588    609   RFA1_XENLA Replication protein A 70 kDa DNA-b...4255e-93     305     37     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
10Q24492    603   RFA1_DROME Replication protein A 70 kDa DNA-b...6071e-88     293     32     53GO:0005662; C:DNA replication factor A complex; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:FlyBase.
GO:0006261; P:DNA-dependent DNA replication; IDA:FlyBase.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.
11Q23696    467   RFA1_CRIFA Replication factor A 51 kDa subuni...4186e-64     223     32     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
12O97472    658   RFA1_CAEBR Probable replication factor A 73 k...4281e-62     224     33     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
13Q19537    655   RFA1_CAEEL Probable replication factor A 73 k...4322e-58     213     32     52GO:0005634; C:nucleus; IDA:WormBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.
14Q6NZG4    898   NOXIN_MOUSE Nitric oxide-inducible gene prote...840.52     37.4     24     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0007050; P:cell cycle arrest; IEA:UniProtKB-KW.
15C4XLY8    179   RL6_DESMR 50S ribosomal protein L6 OS=Desulfo...653.5     33.5     29     52GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
16Q00514    142   GSPG_PSEAE Type II secretion system protein G...396.8     32     38     64GO:0015627; C:type II protein secretion system complex; IEA:InterPro.
GO:0008565; F:protein transporter activity; IEA:InterPro.
GO:0015628; P:protein secretion by the type II secretion system; IEA:InterPro.
records
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