| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | Q12149 | 733 | RRP6_YEAST Exosome complex exonuclease RRP6 O... | 753 | 2e-168 | 510 | 41 | 59 | GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD. | | | | | | | | | | GO:0000175; F:3'-5'-exoribonuclease activity; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0071044; P:histone mRNA catabolic process; IMP:SGD.::GO:0071040; P:nuclear polyadenylation-dependent antisense transcript catabolic process; IMP:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IMP:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IMP:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IMP:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IMP:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IMP:SGD.::GO:0000973; P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery; IMP:SGD.::GO:0034473; P:U1 snRNA 3'-end processing; IMP:SGD.::GO:0034475; P:U4 snRNA 3'-end processing; IMP:SGD.::GO:0034476; P:U5 snRNA 3'-end processing; IMP:SGD. | 2 | Q10146 | 777 | RRP6_SCHPO Exosome complex exonuclease rrp6 O... | 481 | 2e-101 | 336 | 40 | 58 | GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase. | | | | | | | | | | GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase. | 3 | P56960 | 887 | EXOSX_MOUSE Exosome component 10 OS=Mus muscu... | 446 | 2e-74 | 264 | 37 | 54 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.::GO:0005730; C:nucleolus; ISS:UniProtKB. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0009048; P:dosage compensation by inactivation of X chromosome; IMP:MGI.::GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW. | 4 | Q01780 | 885 | EXOSX_HUMAN Exosome component 10 OS=Homo sapi... | 456 | 1e-72 | 259 | 36 | 54 | GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0035327; C:transcriptionally active chromatin; IMP:UniProtKB. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0004532; F:exoribonuclease activity; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0071034; P:CUT catabolic process; IMP:UniProtKB.::GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.::GO:0000460; P:maturation of 5.8S rRNA; IMP:UniProtKB.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:UniProtKB.::GO:0071048; P:nuclear retention of unspliced pre-mRNA at the site of transcription; IMP:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IMP:UniProtKB. | 5 | A5G127 | 392 | RND_ACICJ Ribonuclease D OS=Acidiphilium cryp... | 172 | 9e-17 | 86.7 | 29 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 6 | Q0BVP4 | 395 | RND_GRABC Ribonuclease D OS=Granulibacter bet... | 166 | 0.00000000000002 | 79.7 | 30 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 7 | A9H9B7 | 393 | RND_GLUDA Ribonuclease D OS=PAl5). GN=rnd Ord... | 172 | 0.00000000000007 | 77.8 | 28 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 8 | A6V8R6 | 376 | RND_PSEA7 Ribonuclease D OS=Pseudomonas aerug... | 224 | 0.0000000000001 | 76.6 | 27 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 9 | Q28RA7 | 386 | RND_JANSC Ribonuclease D OS=Jannaschia sp. (s... | 170 | 0.0000000000008 | 74.3 | 31 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 10 | C6C608 | 374 | RND_DICDC Ribonuclease D OS=Dickeya dadantii ... | 259 | 0.000000000009 | 71.2 | 25 | 43 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 11 | Q1QLI8 | 382 | RND_NITHX Ribonuclease D OS=Nitrobacter hambu... | 171 | 0.00000000001 | 70.9 | 28 | 50 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 12 | B8EN54 | 399 | RND_METSB Ribonuclease D OS=Methylocella silv... | 173 | 0.00000000002 | 70.5 | 28 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 13 | A7HYE5 | 384 | RND_PARL1 Ribonuclease D OS=Parvibaculum lava... | 167 | 0.00000000003 | 69.3 | 30 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 14 | Q5NPM2 | 390 | RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis... | 165 | 0.00000000005 | 68.9 | 31 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 15 | C9XUE4 | 369 | RND_CROTZ Ribonuclease D OS=Cronobacter turic... | 256 | 0.0000000003 | 66.6 | 24 | 41 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 16 | Q6G329 | 406 | RND_BARHE Ribonuclease D OS=henselae). GN=rnd... | 163 | 0.0000000003 | 66.2 | 29 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 17 | P09155 | 375 | RND_ECOLI Ribonuclease D OS=Escherichia coli ... | 256 | 0.0000000008 | 65.1 | 25 | 42 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IMP:EcoCyc. | 18 | A0KXU5 | 388 | RND_SHESA Ribonuclease D OS=Shewanella sp. (s... | 266 | 0.000000002 | 63.9 | 23 | 40 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 19 | D4Z694 | 388 | RND_SPHJU Ribonuclease D OS=Sphingobium japon... | 165 | 0.000000003 | 63.5 | 27 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 20 | Q6AJF4 | 374 | RND_DESPS Ribonuclease D OS=Desulfotalea psyc... | 266 | 0.000000007 | 62 | 23 | 43 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 21 | O67779 | 574 | DPO1_AQUAE DNA polymerase I OS=Aquifex aeolic... | 178 | 0.00000001 | 62 | 28 | 48 | GO:0005622; C:intracellular; IEA:InterPro. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW. | 22 | P44442 | 399 | RND_HAEIN Ribonuclease D OS=Haemophilus influ... | 157 | 0.00000004 | 60.1 | 29 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 23 | A8GFH0 | 373 | RND_SERP5 Ribonuclease D OS=Serratia proteama... | 256 | 0.0000006 | 55.8 | 23 | 39 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 24 | Q5GZ75 | 363 | RND_XANOR Ribonuclease D OS=Xanthomonas oryza... | 167 | 0.000003 | 53.9 | 27 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 25 | A1SVE6 | 369 | RND_PSYIN Ribonuclease D OS=Psychromonas ingr... | 257 | 0.000006 | 52.8 | 25 | 42 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC. | | | | | | | | | | GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 26 | Q179T2 | 719 | MUT7_AEDAE Probable exonuclease mut-7 homolog... | 190 | 0.001 | 46.2 | 26 | 42 | GO:0005622; C:intracellular; IEA:InterPro. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro. | | | | | | | | | | | 27 | Q8E166 | 446 | EX7L_STRA5 Exodeoxyribonuclease 7 large subun... | 109 | 5.4 | 33.9 | 23 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro. | | | | | | | | | | GO:0008855; F:exodeoxyribonuclease VII activity; IEA:EC. | | | | | | | | | | GO:0006308; P:DNA catabolic process; IEA:InterPro. | 28 | Q8E6M1 | 446 | EX7L_STRA3 Exodeoxyribonuclease 7 large subun... | 105 | 5.4 | 33.9 | 24 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro. | | | | | | | | | | GO:0008855; F:exodeoxyribonuclease VII activity; IEA:EC. | | | | | | | | | | GO:0006308; P:DNA catabolic process; IEA:InterPro. | 29 | Q3K2M4 | 446 | EX7L_STRA1 Exodeoxyribonuclease 7 large subun... | 109 | 5.4 | 33.9 | 23 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro. | | | | | | | | | | GO:0008855; F:exodeoxyribonuclease VII activity; IEA:EC. | | | | | | | | | | GO:0006308; P:DNA catabolic process; IEA:InterPro. | 30 | Q84LH3 | 288 | WEX_ARATH Werner Syndrome-like exonuclease OS... | 106 | 5.8 | 33.5 | 27 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IDA:UniProtKB.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | | 31 | Q5UQM4 | 399 | YR431_MIMIV Putative 3'-5' exonuclease R431 O... | 188 | 6 | 33.9 | 23 | 47 | GO:0005622; C:intracellular; IEA:InterPro. | | | | | | | | | | GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro. | | | | | | | | | | |
