rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | Q5R628 | 91 | LSM5_PONAB U6 snRNA-associated Sm-like protei... | 58 | 0.4 | 32 | 31 | 60 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 32 | P62322 | 91 | LSM5_MOUSE U6 snRNA-associated Sm-like protei... | 58 | 0.4 | 32 | 31 | 60 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 33 | Q9Y4Y9 | 91 | LSM5_HUMAN U6 snRNA-associated Sm-like protei... | 58 | 0.4 | 32 | 31 | 60 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 34 | Q2HJH0 | 91 | LSM5_BOVIN U6 snRNA-associated Sm-like protei... | 58 | 0.4 | 32 | 31 | 60 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 35 | P62321 | 86 | RUXF_XENLA Small nuclear ribonucleoprotein F ... | 56 | 0.58 | 31.2 | 36 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | P62307 | 86 | RUXF_MOUSE Small nuclear ribonucleoprotein F ... | 56 | 0.58 | 31.2 | 36 | 55 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 37 | P62306 | 86 | RUXF_HUMAN Small nuclear ribonucleoprotein F ... | 56 | 0.58 | 31.2 | 36 | 55 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IMP:UniProtKB. | | | | | | | | | | GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 38 | Q3T0Z8 | 86 | RUXF_BOVIN Small nuclear ribonucleoprotein F ... | 56 | 0.58 | 31.2 | 36 | 55 | GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 39 | Q1E5R1 | 512 | DHH1_COCIM ATP-dependent RNA helicase DHH1 OS... | 53 | 1.3 | 31.6 | 36 | 42 | GO:0000932; C:cytoplasmic mRNA processing body; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 40 | Q55EX5 | 97 | LSM5_DICDI Probable U6 snRNA-associated Sm-li... | 60 | 1.8 | 30.4 | 30 | 60 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 41 | A7MMV1 | 483 | VIAA_CROS8 Protein viaA OS=Cronobacter sakaza... | 36 | 1.8 | 31.2 | 42 | 61 | | | | | | | | | | | | | | | | | | | | | | 42 | Q9SUM2 | 88 | RUXF_ARATH Probable small nuclear ribonucleop... | 61 | 2 | 30 | 36 | 56 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 43 | Q6KC79 | 2804 | NIPBL_HUMAN Nipped-B-like protein OS=Homo sap... | 66 | 2.1 | 31.2 | 27 | 42 | GO:0032116; C:SMC loading complex; IDA:UniProtKB. | | | | | | | | | | GO:0070087; F:chromo shadow domain binding; IPI:BHF-UCL.::GO:0042826; F:histone deacetylase binding; IPI:BHF-UCL.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0047485; F:protein N-terminus binding; IPI:UniProtKB. | | | | | | | | | | GO:0007420; P:brain development; IMP:BHF-UCL.::GO:0034613; P:cellular protein localization; IMP:UniProtKB.::GO:0071481; P:cellular response to X-ray; IMP:UniProtKB.::GO:0050890; P:cognition; IMP:BHF-UCL.::GO:0048589; P:developmental growth; IMP:BHF-UCL.::GO:0042471; P:ear morphogenesis; IMP:BHF-UCL.::GO:0035117; P:embryonic arm morphogenesis; IMP:BHF-UCL.::GO:0048557; P:embryonic digestive tract morphogenesis; IMP:BHF-UCL.::GO:0035261; P:external genitalia morphogenesis; IMP:BHF-UCL.::GO:0048592; P:eye morphogenesis; IMP:BHF-UCL.::GO:0060325; P:face morphogenesis; IMP:BHF-UCL.::GO:0061010; P:gall bladder development; IMP:BHF-UCL.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; IMP:UniProtKB.::GO:0001656; P:metanephros development; NAS:BHF-UCL.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.::GO:0003151; P:outflow tract morphogenesis; IMP:BHF-UCL.::GO:0031065; P:positive regulation of histone deacetylation; IDA:BHF-UCL.::GO:0048638; P:regulation of developmental growth; IMP:BHF-UCL.::GO:0045995; P:regulation of embryonic development; IMP:BHF-UCL.::GO:0042634; P:regulation of hair cycle; IMP:BHF-UCL.::GO:0006974; P:response to DNA damage stimulus; IMP:UniProtKB.::GO:0007605; P:sensory perception of sound; IMP:BHF-UCL.::GO:0061038; P:uterus morphogenesis; IMP:BHF-UCL. | 44 | Q09003 | 536 | COIL_XENLA Coilin OS=Xenopus laevis (African ... | 34 | 2.3 | 31.2 | 53 | 59 | GO:0071601; C:sphere organelle; IDA:UniProtKB. | | | | | | | | | | | | | | | | | | | | | 45 | Q2HAN0 | 82 | LSM6_CHAGB U6 snRNA-associated Sm-like protei... | 55 | 2.4 | 29.6 | 31 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 46 | Q6BR90 | 85 | LSM6_DEBHA U6 snRNA-associated Sm-like protei... | 56 | 2.6 | 29.6 | 30 | 54 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 47 | A7F5M4 | 85 | LSM6_SCLS1 U6 snRNA-associated Sm-like protei... | 59 | 2.7 | 29.6 | 31 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 48 | Q1DRN0 | 80 | LSM6_COCIM U6 snRNA-associated Sm-like protei... | 55 | 2.8 | 29.6 | 31 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 49 | Q66666 | 3436 | TEGU_EHV2 Probable large tegument protein OS=... | 41 | 3.3 | 30.8 | 46 | 51 | | | | | | | | | | | | | | | | | | | | | | 50 | Q6KCD5 | 2798 | NIPBL_MOUSE Nipped-B-like protein OS=Mus musc... | 66 | 3.4 | 30.8 | 27 | 42 | GO:0032116; C:SMC loading complex; ISS:UniProtKB. | | | | | | | | | | | | | | | | | | | | GO:0048703; P:embryonic viscerocranium morphogenesis; IMP:MGI.::GO:0045444; P:fat cell differentiation; IMP:MGI.::GO:0034088; P:maintenance of mitotic sister chromatid cohesion; ISS:UniProtKB.::GO:0040018; P:positive regulation of multicellular organism growth; IMP:MGI.::GO:0045778; P:positive regulation of ossification; IMP:MGI. | 51 | Q5JUK3 | 1230 | KCNT1_HUMAN Potassium channel subfamily T mem... | 19 | 3.6 | 30.4 | 63 | 68 | GO:0008076; C:voltage-gated potassium channel complex; IBA:RefGenome. | | | | | | | | | | GO:0015269; F:calcium-activated potassium channel activity; IBA:RefGenome.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005249; F:voltage-gated potassium channel activity; IBA:RefGenome. | | | | | | | | | | | 52 | Q62167 | 662 | DDX3X_MOUSE ATP-dependent RNA helicase DDX3X ... | 30 | 3.8 | 30.4 | 63 | 63 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 53 | O59744 | 815 | YN28_SCHPO Uncharacterized transcriptional re... | 72 | 4.6 | 30.4 | 25 | 47 | GO:0000785; C:chromatin; NAS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000981; F:sequence-specific DNA binding RNA polymerase II transcription factor activity; NAS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | | 54 | P11824 | 777 | L100_ADE41 Late 100 kDa protein OS=Human aden... | 44 | 4.9 | 30 | 43 | 52 | | | | | | | | | | | | | | | | | | | | | GO:0019060; P:intracellular transport of viral proteins in host cell; IEA:InterPro. | 55 | Q8R9L4 | 433 | MTAD_THETN 5-methylthioadenosine/S-adenosylho... | 52 | 5.1 | 30 | 33 | 58 | | | | | | | | | | | GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0050270; F:S-adenosylhomocysteine deaminase activity; IEA:EC. | | | | | | | | | | | 56 | P54999 | 86 | RUXF_YEAST Small nuclear ribonucleoprotein F ... | 61 | 5.4 | 28.9 | 33 | 49 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 57 | Q02260 | 146 | SMD1_YEAST Small nuclear ribonucleoprotein Sm... | 98 | 5.5 | 29.6 | 26 | 39 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:UniProtKB. | 58 | Q6FKN6 | 1018 | XRN2_CANGA 5'-3' exoribonuclease 2 OS=NRRL Y-... | 48 | 5.8 | 30 | 38 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0004534; F:5'-3' exoribonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006353; P:transcription termination, DNA-dependent; IEA:UniProtKB-KW. | 59 | P38203 | 95 | LSM2_YEAST U6 snRNA-associated Sm-like protei... | 66 | 6.5 | 28.9 | 27 | 55 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 60 | P18488 | 497 | EMS_DROME Homeotic protein empty spiracles OS... | 39 | 7.2 | 29.6 | 41 | 54 | GO:0005634; C:nucleus; IDA:FlyBase. | | | | | | | | | | GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:FlyBase.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro. | | | | | | | | | | GO:0035288; P:anterior head segmentation; TAS:FlyBase.::GO:0007409; P:axonogenesis; IMP:FlyBase.::GO:0035284; P:brain segmentation; IMP:FlyBase.::GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.::GO:0001700; P:embryonic development via the syncytial blastoderm; IMP:FlyBase.::GO:0014019; P:neuroblast development; IMP:FlyBase.::GO:0035277; P:spiracle morphogenesis, open tracheal system; IMP:FlyBase.::GO:0007419; P:ventral cord development; IMP:FlyBase. | 61 | P27680 | 312 | COQ3_YEAST Hexaprenyldihydroxybenzoate methyl... | 72 | 7.4 | 29.6 | 31 | 49 | GO:0019898; C:extrinsic to membrane; IDA:SGD.::GO:0005743; C:mitochondrial inner membrane; IDA:SGD. | | | | | | | | | | GO:0008425; F:2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity; IEA:InterPro.::GO:0008689; F:3-demethylubiquinone-9 3-O-methyltransferase activity; IEA:EC.::GO:0004395; F:hexaprenyldihydroxybenzoate methyltransferase activity; IMP:SGD. | | | | | | | | | | GO:0006744; P:ubiquinone biosynthetic process; IDA:SGD. |