rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
61 | O74499 | 113 | LSM7_SCHPO U6 snRNA-associated Sm-like protei... | 57 | 0.25 | 32 | 35 | 58 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 62 | O29386 | 77 | RUXX_ARCFU Putative snRNP Sm-like protein OS=... | 78 | 0.43 | 30.8 | 28 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 63 | Q8PZZ9 | 72 | RUXX_METMA Putative snRNP Sm-like protein OS=... | 49 | 0.52 | 30.4 | 31 | 59 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 64 | Q54HF6 | 97 | LSM7_DICDI Probable U6 snRNA-associated Sm-li... | 55 | 0.68 | 30.8 | 25 | 62 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 65 | Q9V0Y8 | 75 | RUXX_PYRAB Putative snRNP Sm-like protein OS=... | 80 | 0.72 | 30 | 28 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW. | | | | | | | | | | | 66 | Q1ZXD5 | 94 | NAA38_DICDI N-alpha-acetyltransferase 38, Nat... | 71 | 0.77 | 30.4 | 31 | 55 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 67 | P91918 | 160 | RSMB_CAEEL Probable small nuclear ribonucleop... | 69 | 0.86 | 31.2 | 26 | 54 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase. | 68 | Q8TL47 | 72 | RUXX_METAC Putative snRNP Sm-like protein OS=... | 49 | 1.1 | 29.6 | 31 | 57 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 69 | P47017 | 172 | LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy... | 50 | 1.3 | 30.8 | 32 | 62 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 70 | Q5JIE0 | 76 | RUXX_PYRKO Putative snRNP Sm-like protein OS=... | 73 | 1.3 | 29.6 | 30 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 71 | O74016 | 75 | RUXX_PYRHO Putative snRNP Sm-like protein OS=... | 80 | 1.5 | 29.3 | 26 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 72 | C1DD48 | 85 | HFQ_LARHH Protein hfq OS=Laribacter hongkonge... | 56 | 1.6 | 29.6 | 29 | 55 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 73 | Q5F9R5 | 97 | HFQ_NEIG1 Protein hfq OS=Neisseria gonorrhoea... | 39 | 1.7 | 29.6 | 31 | 67 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 74 | Q21HA2 | 86 | HFQ_SACD2 Protein hfq OS=Saccharophagus degra... | 60 | 1.7 | 29.3 | 30 | 53 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 75 | P64345 | 97 | HFQ_NEIMB Protein hfq OS=Neisseria meningitid... | 39 | 1.8 | 29.6 | 31 | 67 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 76 | P64344 | 97 | HFQ_NEIMA Protein hfq OS=Neisseria meningitid... | 39 | 1.8 | 29.6 | 31 | 67 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 77 | A1KT11 | 97 | HFQ_NEIMF Protein hfq OS=FAM18). GN=hfq Order... | 39 | 1.8 | 29.6 | 31 | 67 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 78 | Q8U0P4 | 76 | RUXX_PYRFU Putative snRNP Sm-like protein OS=... | 80 | 2 | 29.3 | 28 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 79 | A1K3Z4 | 80 | HFQ_AZOSB Protein hfq OS=Azoarcus sp. (strain... | 56 | 2 | 29.3 | 29 | 55 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 80 | Q91684 | 1200 | DPOG1_XENLA DNA polymerase subunit gamma-1 OS... | 44 | 2.3 | 30 | 39 | 59 | GO:0005760; C:gamma DNA polymerase complex; IEA:InterPro.::GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB. | | | | | | | | | | GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006261; P:DNA-dependent DNA replication; IEA:InterPro. | 81 | O42978 | 80 | LSM5_SCHPO U6 snRNA-associated Sm-like protei... | 76 | 2.3 | 28.9 | 25 | 50 | GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 82 | A9IK70 | 78 | HFQ_BORPD Protein hfq OS=Bordetella petrii (s... | 34 | 2.5 | 28.9 | 38 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 83 | Q7VWL6 | 78 | HFQ_BORPE Protein hfq OS=Bordetella pertussis... | 34 | 2.6 | 28.9 | 38 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 84 | Q7W6Q2 | 78 | HFQ_BORPA Protein hfq OS=Bordetella parapertu... | 34 | 2.6 | 28.9 | 38 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 85 | Q7WHN6 | 78 | HFQ_BORBR Protein hfq OS=(Alcaligenes bronchi... | 34 | 2.6 | 28.9 | 38 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 86 | Q2KYA0 | 78 | HFQ_BORA1 Protein hfq OS=Bordetella avium (st... | 34 | 2.6 | 28.9 | 38 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 87 | Q7NS93 | 86 | HFQ_CHRVO Protein hfq OS=NBRC 12614 / NCIMB 9... | 34 | 3 | 28.9 | 35 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 88 | Q54W83 | 129 | LSM1_DICDI Probable U6 snRNA-associated Sm-li... | 53 | 3.1 | 29.6 | 36 | 57 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:dictyBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 89 | Q606N3 | 82 | HFQ_METCA Protein hfq OS=Methylococcus capsul... | 31 | 3.3 | 28.5 | 39 | 68 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 90 | Q47BS1 | 78 | HFQ_DECAR Protein hfq OS=Dechloromonas aromat... | 57 | 3.3 | 28.5 | 26 | 54 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 91 | Q13X33 | 78 | HFQ_BURXL Protein hfq OS=Burkholderia xenovor... | 57 | 3.3 | 28.5 | 28 | 53 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. |