rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | P62322 | 91 | LSM5_MOUSE U6 snRNA-associated Sm-like protei... | 53 | 0.003 | 36.6 | 40 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 32 | Q9Y4Y9 | 91 | LSM5_HUMAN U6 snRNA-associated Sm-like protei... | 53 | 0.003 | 36.6 | 40 | 62 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 33 | Q2HJH0 | 91 | LSM5_BOVIN U6 snRNA-associated Sm-like protei... | 53 | 0.003 | 36.6 | 40 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 34 | P14678 | 240 | RSMB_HUMAN Small nuclear ribonucleoprotein-as... | 49 | 0.004 | 38.1 | 37 | 65 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:UniProtKB. | | | | | | | | | | GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 35 | Q9TU67 | 240 | RSMB_ERIEU Small nuclear ribonucleoprotein-as... | 49 | 0.004 | 38.1 | 37 | 65 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | Q9N1Q0 | 240 | RSMB_MACEU Small nuclear ribonucleoprotein-as... | 49 | 0.004 | 38.1 | 37 | 65 | GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 37 | Q58DW4 | 240 | RSMB_BOVIN Small nuclear ribonucleoprotein-as... | 49 | 0.004 | 38.1 | 37 | 65 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0042802; F:identical protein binding; ISS:AgBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 38 | P63164 | 240 | RSMN_RAT Small nuclear ribonucleoprotein-asso... | 49 | 0.005 | 37.7 | 37 | 63 | GO:0005685; C:U1 snRNP; IDA:RGD.::GO:0005686; C:U2 snRNP; IDA:RGD. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0009725; P:response to hormone stimulus; IEP:RGD. | 39 | Q5R6I0 | 240 | RSMN_PONAB Small nuclear ribonucleoprotein-as... | 49 | 0.005 | 37.7 | 37 | 63 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 40 | P63163 | 240 | RSMN_MOUSE Small nuclear ribonucleoprotein-as... | 49 | 0.005 | 37.7 | 37 | 63 | GO:0005634; C:nucleus; TAS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 41 | Q60HD3 | 240 | RSMN_MACFA Small nuclear ribonucleoprotein-as... | 49 | 0.005 | 37.7 | 37 | 63 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 42 | P63162 | 240 | RSMN_HUMAN Small nuclear ribonucleoprotein-as... | 49 | 0.005 | 37.7 | 37 | 63 | GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:UniProtKB.::GO:0005681; C:spliceosomal complex; TAS:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0008380; P:RNA splicing; TAS:UniProtKB. | 43 | Q17QN3 | 240 | RSMN_BOVIN Small nuclear ribonucleoprotein-as... | 49 | 0.006 | 37.7 | 37 | 63 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 44 | O74966 | 77 | RUXG_SCHPO Small nuclear ribonucleoprotein G ... | 54 | 0.006 | 35.8 | 30 | 69 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 45 | P40089 | 93 | LSM5_YEAST U6 snRNA-associated Sm-like protei... | 53 | 0.006 | 35.8 | 30 | 66 | GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 46 | O74483 | 94 | LSM8_SCHPO U6 snRNA-associated Sm-like protei... | 48 | 0.007 | 35.8 | 35 | 65 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 47 | Q9YEQ5 | 77 | RUXX_AERPE Putative snRNP Sm-like protein OS=... | 71 | 0.011 | 35 | 25 | 56 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 48 | C6A1T2 | 76 | RUXX_THESM Putative snRNP Sm-like protein OS=... | 80 | 0.029 | 33.9 | 29 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 49 | O26745 | 81 | RUXX_METTH Putative snRNP Sm-like protein OS=... | 49 | 0.037 | 33.5 | 39 | 59 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 50 | Q9UK45 | 103 | LSM7_HUMAN U6 snRNA-associated Sm-like protei... | 70 | 0.041 | 33.9 | 33 | 51 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 51 | Q12U30 | 72 | RUXX_METBU Putative snRNP Sm-like protein OS=... | 49 | 0.055 | 33.1 | 37 | 61 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 52 | P40204 | 77 | RUXG_YEAST Small nuclear ribonucleoprotein G ... | 55 | 0.065 | 32.7 | 31 | 65 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 53 | Q465S1 | 72 | RUXX_METBF Putative snRNP Sm-like protein OS=... | 49 | 0.082 | 32.7 | 33 | 61 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 54 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 70 | 0.11 | 32.7 | 31 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 55 | P53905 | 115 | LSM7_YEAST U6 snRNA-associated Sm-like protei... | 71 | 0.13 | 32.7 | 31 | 52 | GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 56 | Q9Y7M4 | 93 | LSM3_SCHPO Probable U6 snRNA-associated Sm-li... | 57 | 0.14 | 32.3 | 32 | 54 | GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 57 | Q5RCP3 | 96 | NAA38_PONAB N-alpha-acetyltransferase 38, Nat... | 68 | 0.14 | 32.3 | 26 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 58 | Q6ZWM4 | 96 | NAA38_MOUSE N-alpha-acetyltransferase 38, Nat... | 68 | 0.14 | 32.3 | 26 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 59 | O95777 | 96 | NAA38_HUMAN N-alpha-acetyltransferase 38, Nat... | 68 | 0.14 | 32.3 | 26 | 62 | GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 60 | Q3ZCE0 | 96 | NAA38_BOVIN N-alpha-acetyltransferase 38, Nat... | 68 | 0.14 | 32.3 | 26 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 61 | O74499 | 113 | LSM7_SCHPO U6 snRNA-associated Sm-like protei... | 57 | 0.25 | 32 | 35 | 58 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. |