| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
811 | Q5RBM8 | 932 | RBM12_PONAB RNA-binding protein 12 OS=Pongo a... | 82 | 0.084 | 39.3 | 26 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 812 | Q99020 | 285 | ROAA_MOUSE Heterogeneous nuclear ribonucleopr... | 86 | 0.067 | 38.9 | 29 | 50 | GO:0005737; C:cytoplasm; IDA:HGNC.::GO:0005634; C:nucleus; IDA:HGNC.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0001837; P:epithelial to mesenchymal transition; IDA:HGNC.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:HGNC.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 813 | Q56JZ7 | 217 | ZCRB1_BOVIN Zinc finger CCHC-type and RNA-bin... | 70 | 0.98 | 35 | 24 | 51 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 814 | Q8VC70 | 383 | RBMS2_MOUSE RNA-binding motif, single-strande... | 65 | 9 | 32.3 | 23 | 46 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 815 | P29558 | 406 | RBMS1_HUMAN RNA-binding motif, single-strande... | 65 | 7.5 | 32.7 | 23 | 48 | GO:0005634; C:nucleus; NAS:UniProtKB. | | | | | | | | | | GO:0003690; F:double-stranded DNA binding; NAS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0003697; F:single-stranded DNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0006260; P:DNA replication; NAS:UniProtKB.::GO:0006396; P:RNA processing; TAS:ProtInc. | 816 | Q54PB2 | 895 | MRD1_DICDI Multiple RNA-binding domain-contai... | 73 | 4.8 | 33.5 | 27 | 47 | GO:0005730; C:nucleolus; ISS:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030515; F:snoRNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006364; P:rRNA processing; ISS:dictyBase. | 817 | Q15434 | 407 | RBMS2_HUMAN RNA-binding motif, single-strande... | 96 | 0.43 | 36.6 | 29 | 47 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0006396; P:RNA processing; TAS:ProtInc. | 818 | Q3ZBP3 | 403 | RBMS1_BOVIN RNA-binding motif, single-strande... | 65 | 6.5 | 33.1 | 23 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006260; P:DNA replication; IEA:UniProtKB-KW. | 819 | Q6CDH3 | 629 | PABP_YARLI Polyadenylate-binding protein, cyt... | 226 | 0.01 | 42.4 | 22 | 38 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 820 | Q8TBF4 | 217 | ZCRB1_HUMAN Zinc finger CCHC-type and RNA-bin... | 70 | 0.82 | 35.4 | 24 | 51 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005689; C:U12-type spliceosomal complex; IDA:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IC:HGNC. | 821 | Q3ZC34 | 407 | RBMS2_BOVIN RNA-binding motif, single-strande... | 106 | 0.041 | 40 | 30 | 50 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 822 | O74968 | 249 | RU1A_SCHPO U1 small nuclear ribonucleoprotein... | 83 | 2.4 | 33.9 | 24 | 42 | GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 823 | Q15717 | 326 | ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapie... | 387 | 0.017 | 41.2 | 20 | 36 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0003729; F:mRNA binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019901; F:protein kinase binding; IPI:UniProtKB. | | | | | | | | | | GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:UniProtKB.::GO:0010467; P:gene expression; TAS:Reactome.::GO:0016071; P:mRNA metabolic process; TAS:Reactome.::GO:0007275; P:multicellular organismal development; TAS:ProtInc.::GO:0045727; P:positive regulation of translation; IDA:MGI. | 824 | P70372 | 326 | ELAV1_MOUSE ELAV-like protein 1 OS=Mus muscul... | 237 | 0.4 | 36.6 | 22 | 39 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:MGI. | | | | | | | | | | GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; IMP:MGI. | 825 | Q5B630 | 732 | PABP_EMENI Polyadenylate-binding protein, cyt... | 109 | 5.6 | 33.5 | 27 | 42 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 826 | Q8BIQ5 | 580 | CSTF2_MOUSE Cleavage stimulation factor subun... | 76 | 0.014 | 41.6 | 32 | 49 | GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 827 | Q9LEB3 | 428 | RBP47_NICPL Polyadenylate-binding protein RBP... | 268 | 8.5 | 32.7 | 24 | 37 | GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0034605; P:cellular response to heat; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 828 | Q13148 | 414 | TADBP_HUMAN TAR DNA-binding protein 43 OS=Hom... | 122 | 3.9 | 33.5 | 25 | 46 | GO:0005634; C:nucleus; IDA:BHF-UCL. | | | | | | | | | | GO:0003690; F:double-stranded DNA binding; IDA:BHF-UCL.::GO:0003730; F:mRNA 3'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc. | | | | | | | | | | GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:BHF-UCL.::GO:0008219; P:cell death; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0043922; P:negative regulation by host of viral transcription; IDA:BHF-UCL.::GO:0008380; P:RNA splicing; IDA:BHF-UCL.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc. | 829 | O09032 | 373 | ELAV4_RAT ELAV-like protein 4 OS=Rattus norve... | 86 | 2.6 | 34.3 | 27 | 49 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | | 830 | Q5ZLN5 | 414 | TADBP_CHICK TAR DNA-binding protein 43 OS=Gal... | 122 | 1.5 | 35 | 26 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 831 | Q5R5W2 | 414 | TADBP_PONAB TAR DNA-binding protein 43 OS=Pon... | 122 | 3.7 | 33.9 | 25 | 46 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 832 | P41891 | 500 | GAR2_SCHPO Protein gar2 OS=Schizosaccharomyce... | 225 | 0.014 | 41.6 | 28 | 42 | GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:PomBase. | | | | | | | | | | GO:0007000; P:nucleolus organization; IMP:PomBase.::GO:0006364; P:rRNA processing; IMP:PomBase. | 833 | Q5PQP1 | 403 | RBMS1_RAT RNA-binding motif, single-stranded-... | 65 | 4.6 | 33.5 | 25 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006260; P:DNA replication; IEA:UniProtKB-KW. | 834 | Q61701 | 385 | ELAV4_MOUSE ELAV-like protein 4 OS=Mus muscul... | 86 | 2.9 | 33.9 | 27 | 49 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | | 835 | Q9FPJ8 | 387 | RB45A_ARATH Polyadenylate-binding protein RBP... | 106 | 0.035 | 40 | 29 | 48 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 836 | P26378 | 380 | ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapie... | 86 | 3 | 33.9 | 27 | 49 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; TAS:ProtInc. | 837 | Q60900 | 367 | ELAV3_MOUSE ELAV-like protein 3 OS=Mus muscul... | 75 | 0.5 | 36.6 | 31 | 47 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW. | 838 | Q54WM4 | 233 | EIF3G_DICDI Eukaryotic translation initiation... | 89 | 0.0006 | 45.1 | 33 | 53 | GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006446; P:regulation of translational initiation; ISS:dictyBase. | 839 | Q9IBD0 | 501 | CELF1_DANRE CUGBP Elav-like family member 1 O... | 81 | 0.93 | 35.8 | 26 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 840 | P19338 | 710 | NUCL_HUMAN Nucleolin OS=Homo sapiens (Human).... | 73 | 0.069 | 39.7 | 29 | 51 | GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0042162; F:telomeric DNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0001525; P:angiogenesis; IDA:UniProtKB. | 841 | Q5RF26 | 712 | NUCL_PONAB Nucleolin OS=Pongo abelii (Sumatra... | 73 | 0.069 | 39.7 | 29 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB. | | | | | | | | | | |
