| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1201 | P36629 | 517 | U2AF2_SCHPO Splicing factor U2AF 59 kDa subun... | 76 | 1.1 | 35.4 | 30 | 45 | GO:0000243; C:commitment complex; IDA:PomBase.::GO:0005686; C:U2 snRNP; TAS:PomBase. | | | | | | | | | | GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; TAS:PomBase. | | | | | | | | | | GO:0000349; P:generation of catalytic spliceosome for first transesterification step; IDA:PomBase.::GO:0000348; P:nuclear mRNA branch site recognition; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase. | 1202 | Q00539 | 523 | NAM8_YEAST Protein NAM8 OS=Saccharomyces cere... | 74 | 2.2 | 34.7 | 27 | 54 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006376; P:mRNA splice site selection; IMP:SGD.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IMP:SGD. | 1203 | Q8CH25 | 1031 | SLTM_MOUSE SAFB-like transcription modulator ... | 74 | 1.2 | 35.8 | 30 | 47 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 1204 | Q9TTV2 | 341 | ROA2_SAGOE Heterogeneous nuclear ribonucleopr... | 99 | 1.2 | 35 | 22 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1205 | Q9JLI8 | 962 | SART3_MOUSE Squamous cell carcinoma antigen r... | 219 | 1.2 | 35.4 | 20 | 40 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 1206 | Q10B98 | 312 | C3H25_ORYSJ Zinc finger CCCH domain-containin... | 74 | 1.3 | 35 | 34 | 50 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | | 1207 | Q5E9J1 | 414 | HNRPF_BOVIN Heterogeneous nuclear ribonucleop... | 61 | 1.3 | 35.4 | 26 | 54 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003727; F:single-stranded RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0043484; P:regulation of RNA splicing; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1208 | B4KCD5 | 154 | NCBP2_DROMO Nuclear cap-binding protein subun... | 87 | 1.3 | 34.3 | 30 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1209 | Q66J99 | 190 | RBM18_XENLA Probable RNA-binding protein 18 O... | 98 | 1.3 | 34.7 | 24 | 50 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 1210 | O94432 | 474 | YHKF_SCHPO Uncharacterized RNA-binding protei... | 94 | 1.3 | 35.4 | 26 | 45 | GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; NAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase. | 1211 | P98092 | 3133 | HMCT_BOMMO Hemocytin OS=Bombyx mori (Silk mot... | 39 | 1.3 | 35.8 | 44 | 59 | | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0007155; P:cell adhesion; IEA:UniProtKB-KW. | 1212 | Q5NVM8 | 305 | RNPS1_PONAB RNA-binding protein with serine-r... | 76 | 1.3 | 35 | 24 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1213 | Q99M28 | 305 | RNPS1_MOUSE RNA-binding protein with serine-r... | 76 | 1.3 | 35 | 24 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1214 | Q4R5N1 | 305 | RNPS1_MACFA RNA-binding protein with serine-r... | 76 | 1.3 | 35 | 24 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1215 | Q15287 | 305 | RNPS1_HUMAN RNA-binding protein with serine-r... | 76 | 1.3 | 35 | 24 | 53 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 1216 | A6QR16 | 305 | RNPS1_BOVIN RNA-binding protein with serine-r... | 76 | 1.3 | 35 | 24 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1217 | P53883 | 403 | NOP13_YEAST Nucleolar protein 13 OS=Saccharom... | 107 | 1.4 | 35 | 22 | 45 | GO:0005730; C:nucleolus; IDA:SGD.::GO:0030684; C:preribosome; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 1218 | B4JUT1 | 154 | NCBP2_DROGR Nuclear cap-binding protein subun... | 97 | 1.4 | 33.9 | 28 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1219 | B4LZ88 | 154 | NCB2B_DROVI Nuclear cap-binding protein subun... | 97 | 1.4 | 33.9 | 28 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1220 | Q9WX39 | 105 | RBPF_NOSS1 Putative RNA-binding protein rbpF ... | 84 | 1.5 | 33.1 | 30 | 45 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 1221 | Q86U42 | 306 | PABP2_HUMAN Polyadenylate-binding protein 2 O... | 116 | 1.5 | 34.7 | 26 | 41 | GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0046778; P:modification by virus of host mRNA processing; TAS:Reactome.::GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006936; P:muscle contraction; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.::GO:0019058; P:viral infectious cycle; TAS:Reactome. | 1222 | Q6AYK1 | 305 | RNPS1_RAT RNA-binding protein with serine-ric... | 76 | 1.5 | 34.7 | 24 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 1223 | Q00438 | 555 | PTBP1_RAT Polypyrimidine tract-binding protei... | 79 | 1.5 | 35 | 29 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0004519; F:endonuclease activity; TAS:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:RGD.::GO:0003697; F:single-stranded DNA binding; TAS:RGD. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; TAS:RGD. | 1224 | Q7KNF2 | 224 | PABP2_DROME Polyadenylate-binding protein 2 O... | 111 | 1.5 | 34.7 | 29 | 43 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:FlyBase. | 1225 | Q28165 | 306 | PABP2_BOVIN Polyadenylate-binding protein 2 O... | 116 | 1.5 | 34.7 | 26 | 41 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 1226 | P48809 | 421 | RB27C_DROME Heterogeneous nuclear ribonucleop... | 187 | 1.5 | 35 | 20 | 39 | GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0005654; C:nucleoplasm; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0030529; C:ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; NAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003697; F:single-stranded DNA binding; IDA:FlyBase. | | | | | | | | | | GO:0007411; P:axon guidance; IMP:FlyBase.::GO:0007298; P:border follicle cell migration; IMP:FlyBase.::GO:0007319; P:negative regulation of oskar mRNA translation; TAS:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; IMP:FlyBase.::GO:0045727; P:positive regulation of translation; IDA:FlyBase.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 1227 | Q8K3P4 | 362 | MSI1H_RAT RNA-binding protein Musashi homolog... | 58 | 1.5 | 35 | 31 | 57 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0030855; P:epithelial cell differentiation; IEP:RGD.::GO:0009725; P:response to hormone stimulus; IMP:RGD. | 1228 | Q61474 | 362 | MSI1H_MOUSE RNA-binding protein Musashi homol... | 58 | 1.5 | 35 | 31 | 57 | GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.::GO:0005844; C:polysome; IDA:MGI. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:MGI. | | | | | | | | | | | 1229 | Q5ZLP8 | 584 | IF2B3_CHICK Insulin-like growth factor 2 mRNA... | 104 | 1.5 | 35 | 25 | 39 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 1230 | Q66JV4 | 834 | R12BB_MOUSE RNA-binding protein 12B-B OS=Mus ... | 73 | 1.6 | 35 | 27 | 47 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 1231 | Q28521 | 320 | ROA1_MACMU Heterogeneous nuclear ribonucleopr... | 203 | 1.6 | 34.7 | 20 | 40 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. |
