| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | O74825 | 135 | RPB4_SCHPO DNA-directed RNA polymerase II sub... | 124 | 2e-25 | 99.4 | 47 | 65 | GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; TAS:PomBase. | | | | | | | | | | GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:PomBase. | | | | | | | | | | GO:0000920; P:cytokinetic cell separation; IMP:PomBase. | 2 | Q9VEA5 | 139 | RPB4_DROME DNA-directed RNA polymerase II 16 ... | 130 | 4e-20 | 85.5 | 42 | 62 | GO:0005671; C:Ada2/Gcn5/Ada3 transcription activator complex; IDA:FlyBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.::GO:0005700; C:polytene chromosome; IDA:FlyBase. | | | | | | | | | | GO:0003682; F:chromatin binding; IDA:FlyBase.::GO:0003899; F:DNA-directed RNA polymerase activity; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0008283; P:cell proliferation; IDA:FlyBase.::GO:0043966; P:histone H3 acetylation; IDA:FlyBase.::GO:0043967; P:histone H4 acetylation; IDA:FlyBase.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0006366; P:transcription from RNA polymerase II promoter; IDA:UniProtKB. | 3 | Q9D7M8 | 142 | RPB4_MOUSE DNA-directed RNA polymerase II sub... | 126 | 2e-18 | 81.3 | 40 | 63 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB. | | | | | | | | | | GO:0003899; F:DNA-directed RNA polymerase activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB. | 4 | O15514 | 142 | RPB4_HUMAN DNA-directed RNA polymerase II sub... | 126 | 2e-18 | 81.3 | 40 | 63 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB. | | | | | | | | | | GO:0003899; F:DNA-directed RNA polymerase activity; IMP:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome. | 5 | P20433 | 221 | RPB4_YEAST DNA-directed RNA polymerase II sub... | 76 | 0.00000000001 | 63.2 | 47 | 67 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD. | | | | | | | | | | GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0031369; F:translation initiation factor binding; IPI:SGD. | | | | | | | | | | GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0031990; P:mRNA export from nucleus in response to heat stress; IMP:SGD.::GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; IMP:SGD.::GO:0045948; P:positive regulation of translational initiation; IMP:SGD.::GO:0034402; P:recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex; IMP:SGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IDA:SGD. | 6 | Q54S04 | 155 | RPB4_DICDI DNA-directed RNA polymerase II sub... | 77 | 0.00000000002 | 62 | 44 | 66 | GO:0005737; C:cytoplasm; IDA:dictyBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:dictyBase. | | | | | | | | | | GO:0003899; F:DNA-directed RNA polymerase activity; IGI:dictyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; IGI:dictyBase. | 7 | P34036 | 4730 | DYHC_DICDI Dynein heavy chain, cytoplasmic OS... | 125 | 1 | 32.7 | 27 | 42 | GO:0005938; C:cell cortex; IDA:dictyBase.::GO:0005813; C:centrosome; IDA:dictyBase.::GO:0005868; C:cytoplasmic dynein complex; IDA:dictyBase.::GO:0030139; C:endocytic vesicle; IDA:dictyBase.::GO:0005874; C:microtubule; IPI:dictyBase. | | | | | | | | | | GO:0005524; F:ATP binding; IDA:dictyBase.::GO:0042623; F:ATPase activity, coupled; IDA:dictyBase.::GO:0003777; F:microtubule motor activity; IEA:InterPro.::GO:0015631; F:tubulin binding; IDA:dictyBase. | | | | | | | | | | GO:0031122; P:cytoplasmic microtubule organization; IMP:dictyBase.::GO:0007018; P:microtubule-based movement; IEA:InterPro. | 8 | P62134 | 993 | RAD50_METMP DNA double-strand break repair Ra... | 62 | 2.5 | 31.6 | 34 | 52 | | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006281; P:DNA repair; IEA:UniProtKB-KW. |
