| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
61 | Q0CR95 | 753 | PABP_ASPTN Polyadenylate-binding protein, cyt... | 99 | 0.43 | 37 | 31 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 62 | Q0CPF9 | 286 | EIF3G_ASPTN Eukaryotic translation initiation... | 69 | 0.43 | 36.6 | 32 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 63 | Q6FRZ6 | 274 | EIF3G_CANGA Eukaryotic translation initiation... | 48 | 0.44 | 36.6 | 40 | 63 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 64 | Q6GLB5 | 326 | ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tr... | 140 | 0.49 | 36.6 | 26 | 49 | GO:0005938; C:cell cortex; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0008298; P:intracellular mRNA localization; ISS:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB. | 65 | Q9CZ96 | 217 | ZCRB1_MOUSE Zinc finger CCHC-type and RNA-bin... | 39 | 0.52 | 35.8 | 44 | 67 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005689; C:U12-type spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 66 | Q499V6 | 217 | ZCRB1_RAT Zinc finger CCHC-type and RNA-bindi... | 39 | 0.53 | 35.8 | 44 | 67 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 67 | Q7XTT4 | 707 | NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp... | 52 | 0.55 | 36.6 | 35 | 54 | | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | | 68 | Q14576 | 367 | ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapie... | 124 | 0.57 | 36.6 | 24 | 48 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW. | 69 | Q5R1W5 | 221 | SRSF2_PANTR Serine/arginine-rich splicing fac... | 57 | 0.57 | 35.8 | 35 | 54 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 70 | Q4VXU2 | 614 | PAP1L_HUMAN Polyadenylate-binding protein 1-l... | 66 | 0.59 | 36.6 | 36 | 47 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 71 | Q2U002 | 287 | EIF3G_ASPOR Eukaryotic translation initiation... | 69 | 0.61 | 36.2 | 33 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 72 | Q1DXH0 | 768 | PABP_COCIM Polyadenylate-binding protein, cyt... | 48 | 0.73 | 36.2 | 40 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 73 | P30352 | 221 | SRSF2_CHICK Serine/arginine-rich splicing fac... | 57 | 0.77 | 35.4 | 35 | 54 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 74 | A2R7Z2 | 288 | EIF3G_ASPNC Eukaryotic translation initiation... | 69 | 0.79 | 35.8 | 33 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. | | | | | | | | | | | 75 | P11940 | 636 | PABP1_HUMAN Polyadenylate-binding protein 1 O... | 49 | 0.8 | 36.2 | 41 | 47 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:UniProtKB.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0008494; F:translation activator activity; TAS:UniProtKB. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; TAS:UniProtKB.::GO:0048255; P:mRNA stabilization; TAS:UniProtKB.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006413; P:translational initiation; TAS:Reactome. | 76 | P61286 | 636 | PABP1_BOVIN Polyadenylate-binding protein 1 O... | 49 | 0.8 | 36.2 | 41 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:AgBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 77 | P29341 | 636 | PABP1_MOUSE Polyadenylate-binding protein 1 O... | 49 | 0.81 | 36.2 | 41 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 78 | P20965 | 633 | PABPA_XENLA Polyadenylate-binding protein 1-A... | 67 | 0.9 | 36.2 | 36 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005844; C:polysome; IDA:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0043621; F:protein self-association; IPI:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; IDA:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; IDA:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 79 | Q9DDY9 | 296 | PAB2A_XENLA Polyadenylate-binding protein 2-A... | 44 | 0.91 | 35.4 | 39 | 55 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB. | 80 | Q5SP50 | 218 | ZCRB1_DANRE Zinc finger CCHC-type and RNA-bin... | 46 | 0.93 | 35 | 33 | 52 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 81 | Q9EPH8 | 636 | PABP1_RAT Polyadenylate-binding protein 1 OS=... | 49 | 0.93 | 35.8 | 41 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 82 | P21522 | 342 | ROA1_SCHAM Heterogeneous nuclear ribonucleopr... | 50 | 0.93 | 35.8 | 36 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 83 | Q5U259 | 326 | ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus ... | 140 | 0.96 | 35.4 | 26 | 47 | GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0008298; P:intracellular mRNA localization; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB. | 84 | Q8BZX4 | 494 | SREK1_MOUSE Splicing regulatory glutamine/lys... | 105 | 1 | 35.8 | 30 | 42 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 85 | Q6IP09 | 633 | PABPB_XENLA Polyadenylate-binding protein 1-B... | 49 | 1 | 35.8 | 41 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005844; C:polysome; ISS:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 86 | Q9JKL7 | 494 | SREK1_RAT Splicing regulatory glutamine/lysin... | 105 | 1 | 35.8 | 30 | 42 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 87 | P51991 | 378 | ROA3_HUMAN Heterogeneous nuclear ribonucleopr... | 50 | 1 | 35.4 | 30 | 60 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 88 | Q6URK4 | 379 | ROA3_RAT Heterogeneous nuclear ribonucleoprot... | 50 | 1 | 35.4 | 30 | 60 | GO:0005737; C:cytoplasm; IDA:RGD.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; IDA:RGD.::GO:0043005; C:neuron projection; IDA:RGD.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003729; F:mRNA binding; IMP:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0051033; F:RNA transmembrane transporter activity; IMP:RGD. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IMP:RGD.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 89 | Q8BG05 | 379 | ROA3_MOUSE Heterogeneous nuclear ribonucleopr... | 50 | 1 | 35.4 | 30 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 90 | Q5R462 | 287 | TSAP1_PONAB tRNA selenocysteine 1-associated ... | 70 | 1.1 | 35.4 | 30 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006412; P:translation; IEA:UniProtKB-KW. | 91 | Q60900 | 367 | ELAV3_MOUSE ELAV-like protein 3 OS=Mus muscul... | 178 | 7.5 | 32.7 | 24 | 43 | | | | | | | | | | | GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW. |
