Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Cryptococcus neoformans grubii H99
Locus:
CNAG_00016
Length:
49
Number of sequences:
6967
Description:
conserved hypothetical protein
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1O42978    80   LSM5_SCHPO U6 snRNA-associated Sm-like protei...495e-21     82.8     76     92GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
2Q55EX5    97   LSM5_DICDI Probable U6 snRNA-associated Sm-li...492e-17     73.6     63     84GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
3Q5R628    91   LSM5_PONAB U6 snRNA-associated Sm-like protei...474e-16     70.5     66     87GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4P62322    91   LSM5_MOUSE U6 snRNA-associated Sm-like protei...474e-16     70.5     66     87GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q9Y4Y9    91   LSM5_HUMAN U6 snRNA-associated Sm-like protei...474e-16     70.5     66     87GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...474e-16     70.5     66     87GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7P40089    93   LSM5_YEAST U6 snRNA-associated Sm-like protei...450.0000000002     55.5     49     80GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
8O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...430.0000005     45.8     47     74GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
9P62311    102   LSM3_MOUSE U6 snRNA-associated Sm-like protei...430.000004     43.5     42     67
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10P62310    102   LSM3_HUMAN U6 snRNA-associated Sm-like protei...430.000004     43.5     42     67GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
11Q32PE9    102   LSM3_BOVIN U6 snRNA-associated Sm-like protei...430.000004     43.5     42     67
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
12Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...430.000006     42.7     40     70GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
13O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...430.00002     41.6     40     65GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
14Q1ZXK3    97   LSM3_DICDI Probable U6 snRNA-associated Sm-li...430.00002     41.6     40     65GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
15Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...430.00002     41.2     37     70GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
16Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...430.00002     41.2     37     70GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
17Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...430.00002     41.2     37     70GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
18Q9Y7M4    93   LSM3_SCHPO Probable U6 snRNA-associated Sm-li...430.0001     39.7     37     65GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
19O14352    121   LSM4_SCHPO Probable U6 snRNA-associated Sm-li...430.0001     39.7     42     63GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
20Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...430.0002     38.5     35     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
21Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...420.0003     38.1     36     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
22Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...420.0005     37.4     36     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
23O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...420.0005     37.4     36     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
24C5A1H1    76   RUXX_THEGJ Putative snRNP Sm-like protein OS=...380.0009     36.6     39     68GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
25C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...420.001     36.6     31     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
26P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...470.001     36.6     28     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
27B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...380.002     35.8     37     68GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
28Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...430.002     35.4     30     65GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
29Q6BR90    85   LSM6_DEBHA U6 snRNA-associated Sm-like protei...430.005     34.7     37     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
30Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...420.006     34.3     31     67GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
31P57743    89   LSM3_YEAST U6 snRNA-associated Sm-like protei...430.008     34.3     33     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
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