| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P47017 | 172 | LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy... | 138 | 1e-46 | 155 | 57 | 73 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 2 | P87173 | 140 | LSM1_SCHPO U6 snRNA-associated Sm-like protei... | 146 | 2e-32 | 117 | 43 | 64 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005845; C:mRNA cap binding complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:PomBase. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 3 | Q8VC85 | 133 | LSM1_MOUSE U6 snRNA-associated Sm-like protei... | 125 | 6e-30 | 111 | 44 | 68 | GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005634; C:nucleus; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 4 | Q5E9Z8 | 133 | LSM1_BOVIN U6 snRNA-associated Sm-like protei... | 125 | 2e-29 | 109 | 43 | 68 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 5 | O15116 | 133 | LSM1_HUMAN U6 snRNA-associated Sm-like protei... | 125 | 2e-29 | 109 | 43 | 68 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0000375; P:RNA splicing, via transesterification reactions; TAS:UniProtKB. | 6 | Q54W83 | 129 | LSM1_DICDI Probable U6 snRNA-associated Sm-li... | 83 | 8e-20 | 84.7 | 49 | 71 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:dictyBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 7 | Q5RCP3 | 96 | NAA38_PONAB N-alpha-acetyltransferase 38, Nat... | 96 | 0.0000000008 | 56.6 | 33 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 8 | Q6ZWM4 | 96 | NAA38_MOUSE N-alpha-acetyltransferase 38, Nat... | 96 | 0.0000000008 | 56.6 | 33 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 9 | O95777 | 96 | NAA38_HUMAN N-alpha-acetyltransferase 38, Nat... | 96 | 0.0000000008 | 56.6 | 33 | 57 | GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 10 | Q3ZCE0 | 96 | NAA38_BOVIN N-alpha-acetyltransferase 38, Nat... | 96 | 0.0000000008 | 56.6 | 33 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 11 | O74483 | 94 | LSM8_SCHPO U6 snRNA-associated Sm-like protei... | 69 | 0.000000001 | 56.2 | 41 | 65 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 12 | Q1ZXD5 | 94 | NAA38_DICDI N-alpha-acetyltransferase 38, Nat... | 70 | 0.00000001 | 53.1 | 36 | 60 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 13 | O74966 | 77 | RUXG_SCHPO Small nuclear ribonucleoprotein G ... | 72 | 0.00001 | 44.7 | 36 | 57 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 14 | O74499 | 113 | LSM7_SCHPO U6 snRNA-associated Sm-like protei... | 91 | 0.00003 | 43.9 | 33 | 52 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 15 | Q9VXE0 | 76 | RUXG_DROME Probable small nuclear ribonucleop... | 72 | 0.00005 | 42.7 | 35 | 57 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase. | 16 | Q54RX0 | 85 | RUXG_DICDI Probable small nuclear ribonucleop... | 72 | 0.00005 | 42.7 | 32 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 17 | P57743 | 89 | LSM3_YEAST U6 snRNA-associated Sm-like protei... | 72 | 0.0004 | 40.4 | 32 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 18 | Q1ZXK3 | 97 | LSM3_DICDI Probable U6 snRNA-associated Sm-li... | 73 | 0.0006 | 40 | 32 | 55 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 19 | Q9UK45 | 103 | LSM7_HUMAN U6 snRNA-associated Sm-like protei... | 74 | 0.0006 | 40 | 35 | 51 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 20 | P62309 | 76 | RUXG_MOUSE Small nuclear ribonucleoprotein G ... | 72 | 0.0006 | 39.7 | 32 | 57 | GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 21 | P62308 | 76 | RUXG_HUMAN Small nuclear ribonucleoprotein G ... | 72 | 0.0006 | 39.7 | 32 | 57 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 22 | Q3ZBL0 | 76 | RUXG_BOVIN Small nuclear ribonucleoprotein G ... | 72 | 0.0006 | 39.7 | 32 | 57 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 23 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 74 | 0.0006 | 40 | 35 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 24 | P53905 | 115 | LSM7_YEAST U6 snRNA-associated Sm-like protei... | 69 | 0.0009 | 40 | 38 | 58 | GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 25 | P62311 | 102 | LSM3_MOUSE U6 snRNA-associated Sm-like protei... | 73 | 0.002 | 38.9 | 30 | 56 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 26 | P62310 | 102 | LSM3_HUMAN U6 snRNA-associated Sm-like protei... | 73 | 0.002 | 38.9 | 30 | 56 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 27 | Q32PE9 | 102 | LSM3_BOVIN U6 snRNA-associated Sm-like protei... | 73 | 0.002 | 38.9 | 30 | 56 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 28 | Q9YEQ5 | 77 | RUXX_AERPE Putative snRNP Sm-like protein OS=... | 68 | 0.004 | 37.7 | 32 | 56 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 29 | A8MWD9 | 76 | RUXGL_HUMAN Small nuclear ribonucleoprotein G... | 72 | 0.005 | 37.4 | 32 | 50 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 30 | Q9PV94 | 240 | RSMB_CHICK Small nuclear ribonucleoprotein-as... | 81 | 0.015 | 37.7 | 31 | 54 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 31 | P40089 | 93 | LSM5_YEAST U6 snRNA-associated Sm-like protei... | 82 | 0.022 | 35.8 | 26 | 51 | GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. |
