Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Coccidiodis immitis RMSCC 2394
Locus:
CIRG_00384
Length:
406
Number of sequences:
10408
Description:
RRM domain containing protein
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q8VXZ9    425   R47BP_ARATH Polyadenylate-binding protein RBP...790.23     37.4     28     48GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
32Q4PI89    1723   SPT6_USTMA Transcription elongation factor SP...630.25     37.4     41     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
33Q9JII5    406   DAZP1_MOUSE DAZ-associated protein 1 OS=Mus m...1130.3     37     26     43GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
34Q96EP5    407   DAZP1_HUMAN DAZ-associated protein 1 OS=Homo ...1130.31     37     26     43GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; TAS:ProtInc.
35Q9LEB4    409   RBP45_NICPL Polyadenylate-binding protein RBP...790.51     36.2     32     48GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
36P42731    629   PABP2_ARATH Polyadenylate-binding protein 2 O...842.2     34.3     30     45GO:0005829; C:cytosol; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009651; P:response to salt stress; IEP:TAIR.
37P70501    852   RBM10_RAT RNA-binding protein 10 OS=Rattus no...740.94     35.4     38     57GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
38Q5B630    732   PABP_EMENI Polyadenylate-binding protein, cyt...1240.99     35.4     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
39Q9V535    165   RBM8A_DROME RNA-binding protein 8A OS=Drosoph...821     34.3     29     55GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0035145; C:exon-exon junction complex; IPI:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007173; P:epidermal growth factor receptor signaling pathway; IMP:FlyBase.::GO:0046595; P:establishment of pole plasm mRNA localization; TAS:FlyBase.::GO:0000226; P:microtubule cytoskeleton organization; IMP:FlyBase.::GO:0006406; P:mRNA export from nucleus; NAS:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0007312; P:oocyte nucleus migration involved in oocyte dorsal/ventral axis specification; IMP:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; TAS:FlyBase.::GO:0007317; P:regulation of pole plasm oskar mRNA localization; IMP:FlyBase.
40A1D4K4    751   PABP_NEOFI Polyadenylate-binding protein, cyt...1241.2     35     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
41Q44554    103   RBPB_NOSS1 Putative RNA-binding protein rbpB ...881.2     32.7     30     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
42Q0WW84    435   RB47B_ARATH Polyadenylate-binding protein RBP...611.3     35     31     48GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
43Q4WK03    753   PABP_ASPFU Polyadenylate-binding protein, cyt...1241.3     35     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
44A4QUF0    762   PABP_MAGO7 Polyadenylate-binding protein, cyt...1241.4     35     24     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0043581; P:mycelium development; IEP:PAMGO_MGG.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
45Q9SVM8    158   GRP2_ARATH Glycine-rich RNA-binding protein 2...821.5     33.5     30     48GO:0005739; C:mitochondrion; IDA:TAIR.
GO:0005524; F:ATP binding; IDA:TAIR.::GO:0005507; F:copper ion binding; IDA:TAIR.::GO:0003690; F:double-stranded DNA binding; IDA:TAIR.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:TAIR.
GO:0009409; P:response to cold; IMP:TAIR.::GO:0006970; P:response to osmotic stress; IMP:TAIR.::GO:0009845; P:seed germination; IMP:TAIR.
46P52958    909   CTF1A_FUSSO Cutinase transcription factor 1 a...801.6     34.7     33     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000981; F:sequence-specific DNA binding RNA polymerase II transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
47Q08473    344   SQD_DROME RNA-binding protein squid OS=Drosop...831.7     34.3     29     48GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0000785; C:chromatin; IDA:FlyBase.::GO:0005737; C:cytoplasm; TAS:FlyBase.::GO:0035062; C:omega speckle; IDA:FlyBase.::GO:0005703; C:polytene chromosome puff; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0003730; F:mRNA 3'-UTR binding; TAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0008069; P:dorsal/ventral axis specification, ovarian follicular epithelium; IMP:FlyBase.::GO:0006406; P:mRNA export from nucleus; NAS:FlyBase.::GO:0033119; P:negative regulation of RNA splicing; IMP:FlyBase.::GO:0017148; P:negative regulation of translation; TAS:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:FlyBase.::GO:0030720; P:oocyte localization involved in germarium-derived egg chamber formation; IMP:FlyBase.::GO:0016325; P:oocyte microtubule cytoskeleton organization; IMP:FlyBase.::GO:0007297; P:ovarian follicle cell migration; IMP:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; IEP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
48A7TQR2    333   RRT5_VANPO Regulator of rDNA transcription pr...1201.8     34.3     28     42
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
49Q28FX0    343   ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tr...1052     34.3     26     43GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
50Q91584    348   ELAV3_XENLA ELAV-like protein 3 OS=Xenopus la...1052.1     33.9     26     43GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
51C8XAP5    452   PAFA_NAKMY Pup--protein ligase OS=Y-104) (Mic...642.5     33.9     33     48
GO:0016881; F:acid-amino acid ligase activity; IEA:EC.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO:0019941; P:modification-dependent protein catabolic process; IEA:InterPro.::GO:0010498; P:proteasomal protein catabolic process; IEA:InterPro.
52Q57014    101   RBPA_SYNY3 Putative RNA-binding protein rbpA ...612.6     32     33     48
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
53P62997    288   TRA2B_RAT Transformer-2 protein homolog beta ...943.7     33.1     28     48GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:RGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000302; P:response to reactive oxygen species; IEP:RGD.
54P62996    288   TRA2B_MOUSE Transformer-2 protein homolog bet...943.7     33.1     28     48GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
55P62995    288   TRA2B_HUMAN Transformer-2 protein homolog bet...943.7     33.1     28     48GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003729; F:mRNA binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
56Q3ZBT6    288   TRA2B_BOVIN Transformer-2 protein homolog bet...943.7     33.1     28     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
57Q9FPJ8    387   RB45A_ARATH Polyadenylate-binding protein RBP...873.8     33.5     24     48GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
58P35207    1287   SKI2_YEAST Antiviral helicase SKI2 OS=Sacchar...583.9     33.5     34     40GO:0055087; C:Ski complex; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IMP:SGD.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IMP:SGD.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
59Q98SJ2    360   DAZP1_XENLA DAZ-associated protein 1 OS=Xenop...614.2     33.1     28     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.
60Q6CJ38    1572   SWR1_KLULA Helicase SWR1 OS=1267 / NRRL Y-114...974.3     33.5     34     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
61P15771    694   NUCL_CHICK Nucleolin OS=Gallus gallus (Chicke...795.5     33.1     30     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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