Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Coccidiodis immitis RMSCC 2394
Locus:
CIRG_00237
Length:
89
Number of sequences:
10408
Description:
conserved hypothetical protein
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...690.0000000009     54.7     45     68GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
32Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...680.000000004     52.8     40     63GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
33Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...680.000000006     52.4     40     62GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
34O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...780.00000001     52     38     60GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
35Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...680.00000001     51.6     41     60GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
36Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...750.00000002     51.2     37     63GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
37P0CR24    88   LSM6_CRYNJ U6 snRNA-associated Sm-like protei...700.00000003     50.8     39     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
38P0CR25    88   LSM6_CRYNB U6 snRNA-associated Sm-like protei...700.00000003     50.8     39     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
39Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...680.00000003     50.4     38     62GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
40Q0UWI9    89   LSM6_PHANO U6 snRNA-associated Sm-like protei...700.00000003     50.4     40     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
41Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...680.00000005     50.1     37     65GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
42A8NHT8    95   LSM6_COPC7 U6 snRNA-associated Sm-like protei...470.00000009     49.3     49     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
43B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...760.0000001     48.5     37     61GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
44Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...690.0000002     48.1     35     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
45Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...680.0000002     48.1     34     65GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
46Q552U1    88   LSM6_DICDI Probable U6 snRNA-associated Sm-li...660.0000003     48.1     39     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
47O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...690.0000003     47.8     35     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
48C5A1H1    76   RUXX_THEGJ Putative snRNP Sm-like protein OS=...690.0000005     47     32     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
49C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...680.000001     45.8     32     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
50Q6CPS7    80   LSM6_KLULA U6 snRNA-associated Sm-like protei...690.00002     42.4     33     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
51A7TK72    83   LSM6_VANPO U6 snRNA-associated Sm-like protei...710.00006     41.2     37     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
52Q6FYB6    79   LSM6_CANGA U6 snRNA-associated Sm-like protei...710.0005     38.5     34     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
53Q54RX0    85   RUXG_DICDI Probable small nuclear ribonucleop...650.002     37     31     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
54P38203    95   LSM2_YEAST U6 snRNA-associated Sm-like protei...730.007     35.8     30     56GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
55Q75BR7    85   LSM6_ASHGO U6 snRNA-associated Sm-like protei...690.023     33.9     28     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
56O14352    121   LSM4_SCHPO Probable U6 snRNA-associated Sm-li...680.041     34.3     31     50GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
57Q9Y4Z0    139   LSM4_HUMAN U6 snRNA-associated Sm-like protei...390.047     34.3     46     67GO:0005829; C:cytosol; TAS:Reactome.::GO:0005688; C:U6 snRNP; TAS:ProtInc.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:ProtInc.
58Q3ZBK6    139   LSM4_BOVIN U6 snRNA-associated Sm-like protei...390.047     34.3     46     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
59Q10163    147   RSMB_SCHPO Small nuclear ribonucleoprotein-as...870.048     34.3     31     53GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
60Q54HF6    97   LSM7_DICDI Probable U6 snRNA-associated Sm-li...810.058     33.1     30     51GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
61Q9QXA5    137   LSM4_MOUSE U6 snRNA-associated Sm-like protei...390.058     33.9     46     67GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005654; C:nucleoplasm; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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