rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | P0CO11 | 726 | CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=(... | 66 | 0.29 | 38.9 | 27 | 52 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 32 | Q9BZJ0 | 848 | CRNL1_HUMAN Crooked neck-like protein 1 OS=Ho... | 137 | 0.74 | 37.7 | 24 | 38 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003723; F:RNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; IDA:UniProtKB. | 33 | Q54XP4 | 705 | CRNL1_DICDI Crooked neck-like protein 1 OS=Di... | 114 | 0.3 | 38.9 | 22 | 43 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB. | 34 | Q91YR7 | 941 | PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mu... | 79 | 4.3 | 35 | 30 | 46 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 35 | Q4WVF4 | 839 | SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=A... | 153 | 0.17 | 39.7 | 24 | 45 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | P63155 | 690 | CRNL1_RAT Crooked neck-like protein 1 OS=Ratt... | 137 | 4.3 | 35 | 23 | 37 | | | | | | | | | | | GO:0003723; F:RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB. | 37 | P63154 | 690 | CRNL1_MOUSE Crooked neck-like protein 1 OS=Mu... | 137 | 4.3 | 35 | 23 | 37 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB. | 38 | P17886 | 702 | CRN_DROME Protein crooked neck OS=Drosophila ... | 60 | 2.2 | 35.8 | 27 | 53 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005813; C:centrosome; IDA:FlyBase.::GO:0072686; C:mitotic spindle; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0008366; P:axon ensheathment; IMP:FlyBase.::GO:0051298; P:centrosome duplication; IMP:FlyBase.::GO:0008347; P:glial cell migration; IMP:FlyBase.::GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0007438; P:oenocyte development; IMP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 39 | A1A5S1 | 941 | PRP6_RAT Pre-mRNA-processing factor 6 OS=Ratt... | 79 | 5.2 | 35 | 30 | 46 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 40 | Q4PB37 | 781 | CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=U... | 99 | 2.9 | 35.8 | 23 | 47 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 41 | O74970 | 612 | PRP39_SCHPO Pre-mRNA-processing factor 39 OS=... | 135 | 0.29 | 38.9 | 26 | 42 | GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase. | 42 | Q2KJJ0 | 941 | PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bo... | 79 | 3.4 | 35.4 | 30 | 47 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 43 | Q9FNS4 | 662 | MBB1_CHLRE PsbB mRNA maturation factor Mbb1, ... | 106 | 0.68 | 37.7 | 25 | 43 | GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 44 | P87312 | 674 | CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=S... | 129 | 0.72 | 37.7 | 22 | 47 | GO:0005681; C:spliceosomal complex; IDA:PomBase. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase. | 45 | Q5RCC2 | 941 | PRP6_PONAB Pre-mRNA-processing factor 6 OS=Po... | 79 | 3.5 | 35.4 | 30 | 46 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 46 | Q7SGD2 | 695 | CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=... | 112 | 4.6 | 35 | 21 | 42 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 47 | O94906 | 941 | PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Ho... | 79 | 4.1 | 35 | 30 | 46 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:BHF-UCL.::GO:0005682; C:U5 snRNP; IDA:BHF-UCL. | | | | | | | | | | GO:0050681; F:androgen receptor binding; IPI:MGI.::GO:0043021; F:ribonucleoprotein complex binding; IDA:BHF-UCL.::GO:0003713; F:transcription coactivator activity; IGI:MGI. | | | | | | | | | | GO:0000244; P:assembly of spliceosomal tri-snRNP; IMP:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB. | 48 | Q9JLI8 | 962 | SART3_MOUSE Squamous cell carcinoma antigen r... | 178 | 0.94 | 37.4 | 18 | 42 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 49 | Q14690 | 1871 | RRP5_HUMAN Protein RRP5 homolog OS=Homo sapie... | 170 | 1.1 | 37.4 | 25 | 39 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:InterPro.::GO:0008134; F:transcription factor binding; IPI:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 50 | P34259 | 239 | SDZ1_CAEEL Skn-1 dependent zygotic transcript... | 52 | 1.2 | 36.2 | 38 | 50 | | | | | | | | | | | | | | | | | | | | | GO:0048382; P:mesendoderm development; IMP:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW. | 51 | Q5K654 | 677 | CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=P... | 122 | 4.9 | 35 | 25 | 46 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 52 | Q8TGY4 | 157 | COAD_METKA Phosphopantetheine adenylyltransfe... | 78 | 2.1 | 34.7 | 22 | 50 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004595; F:pantetheine-phosphate adenylyltransferase activity; IEA:EC. | | | | | | | | | | GO:0015937; P:coenzyme A biosynthetic process; IEA:UniProtKB-KW. | 53 | Q7SAK5 | 829 | SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=... | 75 | 2.1 | 36.2 | 31 | 52 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 54 | Q4WT84 | 676 | CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=A... | 98 | 3.4 | 35.4 | 30 | 45 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 55 | Q9SS83 | 1028 | PP220_ARATH Pentatricopeptide repeat-containi... | 109 | 2.5 | 35.8 | 27 | 45 | GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | | 56 | Q54NS3 | 263 | Y5095_DICDI TPR repeat-containing protein DDB... | 141 | 4.1 | 34.7 | 23 | 44 | | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | | 57 | Q6BSP7 | 714 | CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=0... | 149 | 4.8 | 35 | 26 | 39 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 58 | Q5BDX1 | 673 | CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=1... | 137 | 7.1 | 34.3 | 21 | 39 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 59 | Q6BQ23 | 850 | SYF1_DEBHA Pre-mRNA-splicing factor SYF1 OS=0... | 198 | 5.3 | 34.7 | 23 | 40 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005488; F:binding; IEA:InterPro. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 60 | P14922 | 966 | CYC8_YEAST General transcriptional corepresso... | 92 | 5.3 | 34.7 | 29 | 48 | GO:0017053; C:transcriptional repressor complex; IDA:SGD. | | | | | | | | | | GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0001190; F:RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription; IDA:SGD. | | | | | | | | | | GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD. | 61 | Q6NS46 | 1862 | RRP5_MOUSE Protein RRP5 homolog OS=Mus muscul... | 77 | 6.4 | 34.7 | 26 | 44 | GO:0005829; C:cytosol; IDA:MGI.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:InterPro. | | | | | | | | | | GO:0006915; P:apoptotic process; TAS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; TAS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. |