Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Agaricus bisporus bisporus H97
Locus:
189942
Length:
84
Number of sequences:
10438
Description:
estExt_fgenesh2_kg.C_10828
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q5R628    91   LSM5_PONAB U6 snRNA-associated Sm-like protei...802e-37     126     73     86GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
2P62322    91   LSM5_MOUSE U6 snRNA-associated Sm-like protei...802e-37     126     73     86GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
3Q9Y4Y9    91   LSM5_HUMAN U6 snRNA-associated Sm-like protei...802e-37     126     73     86GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...802e-37     126     73     86GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q55EX5    97   LSM5_DICDI Probable U6 snRNA-associated Sm-li...822e-35     121     65     82GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
6O42978    80   LSM5_SCHPO U6 snRNA-associated Sm-like protei...789e-29     103     65     83GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
7P40089    93   LSM5_YEAST U6 snRNA-associated Sm-like protei...802e-20     83.2     50     75GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
8P62311    102   LSM3_MOUSE U6 snRNA-associated Sm-like protei...750.00000004     50.4     40     52
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9P62310    102   LSM3_HUMAN U6 snRNA-associated Sm-like protei...750.00000004     50.4     40     52GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
10Q32PE9    102   LSM3_BOVIN U6 snRNA-associated Sm-like protei...750.00000004     50.4     40     52
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11O14352    121   LSM4_SCHPO Probable U6 snRNA-associated Sm-li...710.0000004     47.8     38     58GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
12O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...710.0000007     46.6     35     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
13O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...750.0000009     46.2     32     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
14O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...710.0000009     46.2     31     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
15Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...710.000002     45.4     31     59GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
16Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...710.000002     45.1     30     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
17Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...710.000003     45.1     31     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
18Q1ZXK3    97   LSM3_DICDI Probable U6 snRNA-associated Sm-li...750.000003     44.7     36     48GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
19B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...750.000004     44.3     29     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
20Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...710.000006     43.9     30     59GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
21Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...710.000008     43.5     30     58GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
22Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...710.000008     43.5     30     58GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
23A1XQR9    92   RUXE_PIG Small nuclear ribonucleoprotein E OS...750.00001     43.5     28     60GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24P62305    92   RUXE_MOUSE Small nuclear ribonucleoprotein E ...750.00001     43.5     28     60GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
25P62304    92   RUXE_HUMAN Small nuclear ribonucleoprotein E ...750.00001     43.5     28     60GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
26P62303    92   RUXE_CHICK Small nuclear ribonucleoprotein E ...750.00001     43.5     28     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
27A4FUI2    92   RUXE_BOVIN Small nuclear ribonucleoprotein E ...750.00001     43.5     28     60GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...750.00001     43.1     28     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
29C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...710.00002     42.4     25     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
30Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...710.00003     42     30     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
31P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...810.00004     41.6     26     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
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