rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
61 | Q54KX4 | 177 | LSM4_DICDI Probable U6 snRNA-associated Sm-li... | 68 | 0.007 | 36.6 | 32 | 57 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 62 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 72 | 0.008 | 35.4 | 28 | 50 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 63 | P40070 | 187 | LSM4_YEAST U6 snRNA-associated Sm-like protei... | 73 | 0.009 | 36.6 | 29 | 48 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; IMP:SGD. | | | | | | | | | | GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 64 | Q9VXE0 | 76 | RUXG_DROME Probable small nuclear ribonucleop... | 75 | 0.009 | 34.7 | 31 | 55 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase. | 65 | A8MWD9 | 76 | RUXGL_HUMAN Small nuclear ribonucleoprotein G... | 73 | 0.01 | 34.7 | 30 | 51 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 66 | P24715 | 81 | RUXG_MEDSA Probable small nuclear ribonucleop... | 63 | 0.011 | 34.7 | 24 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 67 | Q43582 | 146 | LSM4_TOBAC Probable U6 snRNA-associated Sm-li... | 71 | 0.013 | 35.8 | 30 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 68 | P87173 | 140 | LSM1_SCHPO U6 snRNA-associated Sm-like protei... | 78 | 0.013 | 35.4 | 27 | 51 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005845; C:mRNA cap binding complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:PomBase. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 69 | Q552U1 | 88 | LSM6_DICDI Probable U6 snRNA-associated Sm-li... | 59 | 0.014 | 34.7 | 36 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 70 | Q6BR90 | 85 | LSM6_DEBHA U6 snRNA-associated Sm-like protei... | 69 | 0.023 | 33.9 | 26 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 71 | P47017 | 172 | LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy... | 64 | 0.023 | 35 | 28 | 52 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 72 | Q1ZXD5 | 94 | NAA38_DICDI N-alpha-acetyltransferase 38, Nat... | 68 | 0.053 | 33.1 | 25 | 53 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 73 | Q5RCP3 | 96 | NAA38_PONAB N-alpha-acetyltransferase 38, Nat... | 66 | 0.11 | 32.3 | 24 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 74 | Q6ZWM4 | 96 | NAA38_MOUSE N-alpha-acetyltransferase 38, Nat... | 66 | 0.11 | 32.3 | 24 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 75 | O95777 | 96 | NAA38_HUMAN N-alpha-acetyltransferase 38, Nat... | 66 | 0.11 | 32.3 | 24 | 56 | GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 76 | Q3ZCE0 | 96 | NAA38_BOVIN N-alpha-acetyltransferase 38, Nat... | 66 | 0.11 | 32.3 | 24 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 77 | Q9QXA5 | 137 | LSM4_MOUSE U6 snRNA-associated Sm-like protei... | 71 | 0.12 | 33.1 | 28 | 55 | GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005654; C:nucleoplasm; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 78 | Q9Y4Z0 | 139 | LSM4_HUMAN U6 snRNA-associated Sm-like protei... | 71 | 0.15 | 32.7 | 28 | 55 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005688; C:U6 snRNP; TAS:ProtInc. | | | | | | | | | | GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:ProtInc. | 79 | Q3ZBK6 | 139 | LSM4_BOVIN U6 snRNA-associated Sm-like protei... | 71 | 0.15 | 32.7 | 28 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 80 | O74483 | 94 | LSM8_SCHPO U6 snRNA-associated Sm-like protei... | 60 | 0.23 | 31.6 | 32 | 50 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 81 | Q9PV94 | 240 | RSMB_CHICK Small nuclear ribonucleoprotein-as... | 65 | 0.35 | 32 | 28 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 82 | P63164 | 240 | RSMN_RAT Small nuclear ribonucleoprotein-asso... | 65 | 0.48 | 31.6 | 28 | 49 | GO:0005685; C:U1 snRNP; IDA:RGD.::GO:0005686; C:U2 snRNP; IDA:RGD. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0009725; P:response to hormone stimulus; IEP:RGD. | 83 | Q5R6I0 | 240 | RSMN_PONAB Small nuclear ribonucleoprotein-as... | 65 | 0.48 | 31.6 | 28 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 84 | P63163 | 240 | RSMN_MOUSE Small nuclear ribonucleoprotein-as... | 65 | 0.48 | 31.6 | 28 | 49 | GO:0005634; C:nucleus; TAS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 85 | Q60HD3 | 240 | RSMN_MACFA Small nuclear ribonucleoprotein-as... | 65 | 0.48 | 31.6 | 28 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 86 | P63162 | 240 | RSMN_HUMAN Small nuclear ribonucleoprotein-as... | 65 | 0.48 | 31.6 | 28 | 49 | GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:UniProtKB.::GO:0005681; C:spliceosomal complex; TAS:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0008380; P:RNA splicing; TAS:UniProtKB. | 87 | Q17QN3 | 240 | RSMN_BOVIN Small nuclear ribonucleoprotein-as... | 65 | 0.64 | 31.2 | 26 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 88 | Q8SQK1 | 94 | LSM2_ENCCU Probable U6 snRNA-associated Sm-li... | 50 | 0.68 | 30.4 | 34 | 52 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 89 | O14036 | 115 | SMD2_SCHPO Small nuclear ribonucleoprotein Sm... | 82 | 0.71 | 30.8 | 24 | 51 | GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase. | 90 | O42764 | 419 | HPPD_MYCGR 4-hydroxyphenylpyruvate dioxygenas... | 49 | 0.72 | 31.2 | 35 | 57 | | | | | | | | | | | GO:0003868; F:4-hydroxyphenylpyruvate dioxygenase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006559; P:L-phenylalanine catabolic process; IEA:UniProtKB-KW.::GO:0006572; P:tyrosine catabolic process; IEA:UniProtKB-KW. | 91 | B8GMN6 | 304 | LPXC_THISH UDP-3-O-[3-hydroxymyristoyl] N-ace... | 54 | 0.96 | 30.8 | 31 | 57 | | | | | | | | | | | GO:0008759; F:UDP-3-O-[3-hydroxymyristoyl N-acetylglucosamine deacetylase activity; IEA:InterPro. | | | | | | | | | | GO:0009245; P:lipid A biosynthetic process; IEA:UniProtKB-KW.] |