| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | O74968 | 249 | RU1A_SCHPO U1 small nuclear ribonucleoprotein... | 240 | 6e-52 | 177 | 40 | 59 | GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 2 | Q0DKM4 | 253 | RU1A_ORYSJ U1 small nuclear ribonucleoprotein... | 252 | 4e-48 | 167 | 41 | 58 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 3 | A2Y0J7 | 253 | RU1A_ORYSI U1 small nuclear ribonucleoprotein... | 252 | 4e-48 | 167 | 41 | 58 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 4 | P08579 | 225 | RU2B_HUMAN U2 small nuclear ribonucleoprotein... | 228 | 3e-47 | 163 | 40 | 60 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005686; C:U2 snRNP; TAS:ProtInc. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 5 | Q9CQI7 | 225 | RU2B_MOUSE U2 small nuclear ribonucleoprotein... | 230 | 7e-47 | 162 | 41 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 6 | Q06AA4 | 282 | SNRPA_PIG U1 small nuclear ribonucleoprotein ... | 111 | 0.63 | 35 | 30 | 47 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 7 | Q2KIR1 | 282 | SNRPA_BOVIN U1 small nuclear ribonucleoprotei... | 111 | 0.57 | 35 | 30 | 47 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 8 | Q62189 | 287 | SNRPA_MOUSE U1 small nuclear ribonucleoprotei... | 111 | 0.59 | 35 | 30 | 47 | GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 9 | O22922 | 232 | RU2B1_ARATH U2 small nuclear ribonucleoprotei... | 70 | 0.044 | 38.1 | 31 | 57 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000354; P:cis assembly of pre-catalytic spliceosome; TAS:TAIR. | 10 | P45429 | 282 | SNRPA_XENLA U1 small nuclear ribonucleoprotei... | 117 | 0.003 | 42.4 | 32 | 50 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 11 | Q39244 | 250 | RU1A_ARATH U1 small nuclear ribonucleoprotein... | 242 | 3e-43 | 154 | 38 | 55 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.::GO:0009651; P:response to salt stress; IGI:TAIR. | 12 | P09012 | 282 | SNRPA_HUMAN U1 small nuclear ribonucleoprotei... | 111 | 0.67 | 34.7 | 30 | 47 | GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IDA:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:HGNC. | 13 | P43332 | 216 | SNRPA_DROME U1 small nuclear ribonucleoprotei... | 232 | 6e-40 | 144 | 38 | 54 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0005685; C:U1 snRNP; ISS:FlyBase.::GO:0005686; C:U2 snRNP; ISS:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0035614; F:snRNA stem-loop binding; IDA:FlyBase.::GO:0030619; F:U1 snRNA binding; IDA:FlyBase.::GO:0030620; F:U2 snRNA binding; IDA:FlyBase. | | | | | | | | | | GO:0019099; P:female germ-line sex determination; NAS:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0048477; P:oogenesis; IMP:FlyBase.::GO:0007539; P:primary sex determination, soma; NAS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 14 | Q10MR0 | 232 | RU2B_ORYSJ U2 small nuclear ribonucleoprotein... | 84 | 0.31 | 35.8 | 29 | 56 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 15 | B8AM21 | 232 | RU2B_ORYSI U2 small nuclear ribonucleoprotein... | 84 | 0.32 | 35.8 | 29 | 56 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 16 | Q8H1S6 | 229 | RU2B2_ARATH U2 small nuclear ribonucleoprotei... | 237 | 1e-37 | 138 | 35 | 54 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 17 | Q54J05 | 241 | RU2B_DICDI U2 small nuclear ribonucleoprotein... | 243 | 3e-35 | 132 | 33 | 51 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 18 | Q7LL14 | 111 | RU2B_SCHPO Probable U2 small nuclear ribonucl... | 104 | 0.0000000000001 | 69.7 | 38 | 62 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030620; F:U2 snRNA binding; ISS:PomBase. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase. | 19 | P40567 | 111 | MSL1_YEAST U2 small nuclear ribonucleoprotein... | 84 | 0.000000008 | 56.6 | 33 | 58 | GO:0005686; C:U2 snRNP; TAS:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030620; F:U2 snRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD. | 20 | Q9SAB3 | 405 | RB45B_ARATH Polyadenylate-binding protein RBP... | 231 | 0.00000002 | 58.5 | 22 | 40 | GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0010193; P:response to ozone; IEP:TAIR.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 21 | P32605 | 298 | RU1A_YEAST U1 small nuclear ribonucleoprotein... | 241 | 0.0000006 | 53.5 | 27 | 44 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030619; F:U1 snRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IGI:SGD. | 22 | Q93W34 | 415 | RP45C_ARATH Polyadenylate-binding protein RBP... | 230 | 0.0000009 | 53.1 | 23 | 37 | GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 23 | Q00438 | 555 | PTBP1_RAT Polypyrimidine tract-binding protei... | 76 | 0.0001 | 46.6 | 36 | 58 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0004519; F:endonuclease activity; TAS:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:RGD.::GO:0003697; F:single-stranded DNA binding; TAS:RGD. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; TAS:RGD. | 24 | Q8WN55 | 531 | PTBP1_BOVIN Polypyrimidine tract-binding prot... | 76 | 0.002 | 43.1 | 34 | 57 | GO:0005634; C:nucleus; ISS:AgBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 25 | O64380 | 660 | PABP3_ARATH Polyadenylate-binding protein 3 O... | 90 | 0.47 | 35.8 | 26 | 52 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IGI:TAIR. | 26 | Q9FPJ8 | 387 | RB45A_ARATH Polyadenylate-binding protein RBP... | 79 | 3 | 33.1 | 24 | 47 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 27 | Q8BHD7 | 523 | PTBP3_MOUSE Polypyrimidine tract-binding prot... | 265 | 0.000004 | 51.6 | 25 | 41 | GO:0005634; C:nucleus; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043249; P:erythrocyte maturation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 28 | Q6ZI17 | 848 | OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativ... | 75 | 0.62 | 35.4 | 28 | 48 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 29 | Q8VWF5 | 800 | AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis... | 72 | 0.046 | 38.9 | 32 | 54 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0045927; P:positive regulation of growth; IMP:UniProtKB.::GO:0045836; P:positive regulation of meiosis; IMP:UniProtKB. | 30 | O95758 | 552 | PTBP3_HUMAN Polypyrimidine tract-binding prot... | 265 | 0.00001 | 50.1 | 25 | 41 | GO:0005634; C:nucleus; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0043249; P:erythrocyte maturation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0033119; P:negative regulation of RNA splicing; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 31 | Q1ZXC2 | 814 | PAP1B_DICDI Polyadenylate-binding protein 1-B... | 277 | 0.37 | 36.2 | 19 | 41 | GO:0005737; C:cytoplasm; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:dictyBase. |
