| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
481 | Q14103 | 355 | HNRPD_HUMAN Heterogeneous nuclear ribonucleop... | 80 | 0.72 | 35.4 | 31 | 49 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; NAS:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0042162; F:telomeric DNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0045893; P:positive regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0006401; P:RNA catabolic process; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 482 | P78814 | 365 | SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=S... | 71 | 0.72 | 35.4 | 30 | 48 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase.::GO:0046982; F:protein heterodimerization activity; IPI:PomBase. | | | | | | | | | | GO:0006406; P:mRNA export from nucleus; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 483 | Q43472 | 161 | GRP_HORVU Glycine-rich RNA-binding protein bl... | 85 | 0.73 | 34.7 | 25 | 49 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0009737; P:response to abscisic acid stimulus; IDA:UniProtKB.::GO:0009409; P:response to cold; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 484 | Q8SR30 | 502 | PABP_ENCCU Polyadenylate-binding protein, cyt... | 76 | 8.9 | 32.3 | 26 | 50 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 485 | O14979 | 420 | HNRDL_HUMAN Heterogeneous nuclear ribonucleop... | 82 | 0.76 | 35.4 | 30 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc. | | | | | | | | | | GO:0003690; F:double-stranded DNA binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:ProtInc.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006396; P:RNA processing; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 486 | O94359 | 116 | YHOC_SCHPO Uncharacterized RNA-binding protei... | 73 | 0.76 | 33.9 | 32 | 45 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 487 | Q9FPJ8 | 387 | RB45A_ARATH Polyadenylate-binding protein RBP... | 70 | 0.78 | 35.4 | 29 | 51 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 488 | Q9ZR39 | 555 | U2A2A_NICPL Splicing factor U2af large subuni... | 71 | 0.81 | 35.4 | 31 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 489 | Q10355 | 219 | YDB2_SCHPO Uncharacterized RNA-binding protei... | 64 | 0.81 | 35 | 25 | 56 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007126; P:meiosis; IEP:PomBase. | 490 | Q642J5 | 373 | RFOX1_DANRE RNA binding protein fox-1 homolog... | 102 | 0.83 | 35.4 | 27 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0021854; P:hypothalamus development; IMP:ZFIN.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 491 | Q01844 | 656 | EWS_HUMAN RNA-binding protein EWS OS=Homo sap... | 101 | 0.83 | 35.8 | 28 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005622; C:intracellular; IEA:InterPro.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 492 | Q00539 | 523 | NAM8_YEAST Protein NAM8 OS=Saccharomyces cere... | 74 | 0.84 | 35.4 | 27 | 49 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006376; P:mRNA splice site selection; IMP:SGD.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IMP:SGD. | 493 | Q5RBU8 | 353 | ROA2_PONAB Heterogeneous nuclear ribonucleopr... | 50 | 1.2 | 34.7 | 32 | 60 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 494 | A7VJC2 | 353 | ROA2_RAT Heterogeneous nuclear ribonucleoprot... | 61 | 0.85 | 35.4 | 31 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 495 | Q9D8T7 | 112 | SLIRP_MOUSE SRA stem-loop-interacting RNA-bin... | 81 | 0.85 | 33.5 | 23 | 52 | GO:0005739; C:mitochondrion; IDA:MGI.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 496 | Q4IQW0 | 559 | NOP12_GIBZE Nucleolar protein 12 OS=(Wheat he... | 43 | 0.86 | 35.4 | 40 | 60 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 497 | O81126 | 200 | RZP22_ARATH Serine/arginine-rich splicing fac... | 61 | 0.86 | 34.7 | 33 | 51 | GO:0016607; C:nuclear speck; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:TAIR. | 498 | Q8BHN5 | 476 | RBM45_MOUSE RNA-binding protein 45 OS=Mus mus... | 68 | 0.88 | 35.4 | 32 | 49 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; ISS:UniProtKB. | 499 | O88569 | 353 | ROA2_MOUSE Heterogeneous nuclear ribonucleopr... | 61 | 0.89 | 35.4 | 31 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; ISS:HGNC.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0097157; F:pre-mRNA intronic binding; IDA:MGI.::GO:0043047; F:single-stranded telomeric DNA binding; ISS:HGNC. | | | | | | | | | | GO:0006397; P:mRNA processing; ISS:HGNC.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IMP:MGI.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0050658; P:RNA transport; ISS:HGNC. | 500 | P22626 | 353 | ROA2_HUMAN Heterogeneous nuclear ribonucleopr... | 61 | 0.89 | 35.4 | 31 | 52 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; IDA:HGNC.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:HGNC.::GO:0043047; F:single-stranded telomeric DNA binding; IDA:HGNC. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0050658; P:RNA transport; IDA:HGNC. | 501 | Q8R326 | 523 | PSPC1_MOUSE Paraspeckle component 1 OS=Mus mu... | 71 | 0.9 | 35.4 | 34 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0042382; C:paraspeckles; IDA:MGI. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 502 | Q3ZC34 | 407 | RBMS2_BOVIN RNA-binding motif, single-strande... | 64 | 5.1 | 33.1 | 31 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 503 | Q7ZT82 | 382 | RFX1L_DANRE RNA binding protein fox-1 homolog... | 103 | 0.91 | 35.4 | 27 | 47 | GO:0005634; C:nucleus; IDA:ZFIN. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:ZFIN. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0043484; P:regulation of RNA splicing; IDA:ZFIN.::GO:0008380; P:RNA splicing; IDA:ZFIN. | 504 | O94432 | 474 | YHKF_SCHPO Uncharacterized RNA-binding protei... | 63 | 3.6 | 33.5 | 30 | 49 | GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; NAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase. | 505 | Q4KLH4 | 522 | PSPC1_RAT Paraspeckle component 1 OS=Rattus n... | 71 | 0.94 | 35.4 | 34 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 506 | Q93W34 | 415 | RP45C_ARATH Polyadenylate-binding protein RBP... | 75 | 0.98 | 35 | 25 | 49 | GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 507 | Q23121 | 312 | RSP1_CAEEL Probable splicing factor, arginine... | 72 | 1 | 35 | 29 | 56 | GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040026; P:positive regulation of vulval development; IMP:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; IGI:UniProtKB. | 508 | P26686 | 376 | SRR55_DROME Serine-arginine protein 55 OS=Dro... | 70 | 1.2 | 35 | 39 | 56 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007067; P:mitosis; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 509 | Q7T3I7 | 214 | RBM38_XENLA RNA-binding protein 38 OS=Xenopus... | 92 | 1.2 | 34.3 | 28 | 49 | GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 510 | Q8WXF1 | 523 | PSPC1_HUMAN Paraspeckle component 1 OS=Homo s... | 71 | 1.2 | 35 | 34 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:HPA. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 511 | P52912 | 386 | TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus ... | 70 | 1.5 | 34.7 | 27 | 53 | | | | | | | | | | | | | | | | | | | | | |
