Publications
Publications in 2016

Patrick J. Horn, Jinjie Liu, Jean-Christophe Cocuron, Kate McGlew, Nicholas A. Thrower, Matt Larson, Chaofu Lu, Ana Paula Alonso, John Ohlrogge
2016
Identification of Multiple Lipid Genes with Modifications in Expression and Sequence Associated with the Evolution of Hydroxy Fatty Acid Accumulation in Physaria fendleri.
The Plant Journal
DOI: 10.1111/tpj.13163

Shockey, J., Regmi, A., Cotton, K., Adhikari, N., Browse, J. and Bates, P.D.
2016
Identification of Arabidopsis GPAT9 (At5g60620) as an Essential Gene Involved in Triacylglycerol Biosynthesis
Plant Physiology
Volume 170 no. 1
Pages 163-179
http:/​/​dx.​doi.​org/​10.​1104/​pp.​15.​01563

Publications in 2015

Saroj Poudel, Niranjan Aryal, Chaofu Lu
2015
Identification of MicroRNAs and Transcript Targets in Camelina sativa by Deep Sequencing and Computational Methods
PLoS One
Volume 10 Issue 3
Pages
http://dx.doi.org/10.1371/journal.pone.0121542

Bayon, S. Chen, G., Weselake, R.J. and Browse, J.
2015
A Small Phospholipase A2-α from Castor Catalyzes the Removal of Hydroxy Fatty Acids from Phosphatidylcholine in Transgenic Arabidopsis Seeds
Plant Physiology
Volume 167 no. 4
Pages 1259-1270
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​114.​253641

Horn, P., Liu, J., Cocuron, J.-C., McGlew, K., Thrower, N., Larson, M., Lu, C., Alonso, A., and Ohlrogge, J.
2015
Identification of Multiple Lipid Genes with Modifications in Expression and Sequence Associated with the Evolution of Hydroxy Fatty Acid Accumulation in Physaria fendleri
The Plant Journal
Volume
Pages
DOI: 10.1111/tpj.13163

van Erp, H., Shockey, J., Zhang, M., Adhikari, N.D. and Browse, J.
2015
Reducing Isozyme Competition Increases Target Fatty Acid Accumulation in Seed Triacylglycerols of Transgenic Arabidopsis
Plant Physiology
Volume 168 no.1
Pages 36-46
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​114.​254110



Publications in 2014

Anna R. Snapp, Jinling Kang, Xiaoli Qi, Chaofu Lu
2014
A fatty acid condensing enzyme from Physaria fendleri increases hydroxy fatty acid accumulation in transgenic oilseeds of Camelina sativa
Planta
Volume 240 Issue 3
Pages 599-610
DOI: 10.1007/s00425-014-2122-2

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Xiao-Hong Yu, Richa Rawat Prakash, Marie Sweet, & John Shanklin
2014
Coexpressing Escherichia coli Cyclopropane Synthase with Sterculia foetida Lysophosphatidic Acid Acyltransferase Enhances Cyclopropane Fatty Acid Accumulation
Plant Physiology
Volume 164 no. 1
Pages 455-465
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​113.​230953

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Philip D. Bates, Sean R. Johnson, Xia Cao, Jia Li, Jeong-Won Nam, Jan G. Jaworski, John B. Ohlrogge, & John Browse
2014
Fatty acid synthesis is inhibited by inefficient utilization of unusual fatty acids for glycerolipid assembly
PNAS
Volume 111 no. 3
Pages 1204–1209
doi: 10.1073/pnas.1318511111

Publications in 2013

Laura L. Wayne, John Browse
2013
Homologous electron transport components fail to increase fatty acid hydroxylation in transgenic Arabidopsis thaliana
F1000Research
Volume 2:203
Pages
doi: 10.12688/f1000research.2-203.v2

Philip David Bates, Jeremy Burke Jewell and John Browse
2013
Rapid separation of developing Arabidopsis seeds from siliques for RNA or metabolite analysis
Plant Methods
Volume 9
Pages 1-4
DOI: 10.1186/1746-4811-9-9

Publications in 2012

Philip D. Bates, Abdelhak Fatihi, Anna R. Snapp, Anders S. Carlsson, John Browse and Chaofu Lu
2012
Plant Physiology
Volume 160 no. 3
Pages 1530-1539
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​112.​204438

Hu, Z., Ren, Z. and Lu, C
2012
The Phosphatidylcholine Diacylglycerol Cholinephosphotransferase Is Required for Efficient Hydroxy Fatty Acid Accumulation in Transgenic Arabidopsis
Plant Physiology
Volume 158 no. 4
Pages 1944-1954
http:/​/​dx.​doi.​org/​10.​1104/​pp.​111.​192153

Tjellström, H., Yang, Z., Allen, D.K., and Ohlrogge, J.B.
2012
Rapid Kinetic Labeling of Arabidopsis Cell Suspension Cultures: Implications for Models of Lipid Export from Plastids
Plant Physiology
Volume 158 no. 2
Pages 601-611
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​111.​186122

Chapman, K.D., and Ohlrogge, J.B.
2012
Compartmentation of Triacylglycerol Accumulation in Plants
The Journal of Biological Chemistry
Volume 287
Pages 2288-2294
doi: 10.1074/jbc.R111.290072

Publications in 2011

Yu, X.H., Rawat, R., and Shanklin, J.
2011
Characterization and analysis of the cotton cyclopropane fatty acid synthase family and their contribution to cyclopropane fatty acid synthesis
BMC Plant Biology
Volume 11:97
Page
DOI: 10.1186/1471-2229-11-97

van Erp, H., Bates, P.D., Burgal, J., Shockey, J., and Browse, J.
2011
Castor Phospholipid:Diacylglycerol Acyltransferase Facilitates Efficient Metabolism of Hydroxy Fatty Acids in Transgenic Arabidopsis
Plant Physiology
Volume 155 no. 2
Page 683-693
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​110.​167239

Troncoso-Ponce, M.A., Kilaru, A., Cao, X., Durrett, T.P., Fan, J., Jensen, J.K., Thrower, N.A., Pauly, M., Wilkerson, C., and Ohlrogge, J.B.
2011
Comparative deep transcriptional profiling of four developing oilseeds
The Plant Journal
Volume 68 Issue 6
Page 1014-1027
doi: http://dx.doi.org/10.1111/j.1365-313X.2011.04751.x

Shockey, J., and Browse, J.
2010
Genome-level and biochemical diversity of the acyl-activating enzyme superfamily in plants
The Plant Journal
Volume 66 Issue 1
Page 143-160
DOI: 10.1111/j.1365-313X.2011.04512.x

Shi, J., Tan, H., Yu, X.H., Liu, Y., Liang, W., Ranathunge, K., Franke, R.B., Schreiber, L., Wang, Y., Kai, G., Shanklin, J., Ma, H., and Zhang, D.
2011
Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase
The Plant Cell
Volume 23, no 6
Page 2225-2246
doi: http:/​/​dx.​doi.​org/​10.​1105/​tpc.​111.​087528

Lu, C., Napier, J.A., Clemente, T.E., and Cahoon, E.B.
2011
New frontiers in oilseed biotechnology: meeting the global demand for vegetable oils for food, feed, biofuel, and industrial applications
Current Opinion in Biotechnology
Volume 22 Issue 2
Page 252–259
doi:10.1016/j.copbio.2010.11.006

Kang, J., Snapp, A.R., and Lu, C.
2011
Identification of three genes encoding microsomal oleate desaturases (FAD2) from the oilseed crop Camelina sativa
Plant Physiology and Biochemistry
Volume 49, Issue 2
Pages 223–229
doi:10.1016/j.plaphy.2010.12.004

Collins-Silva, J.E., Lu, C., Cahoon, E.B.
2011
Camelina: A designer biotech oilseed crop
Inform
Volume 22
pages 610-613
doi:

Grace Q. Chen, Jiann-Tsyh Lin, Chaofu Lu
2011
Hydroxy fatty acid synthesis and lipid gene expression during seed development in Lesquerella fendleri
Industrial Crops and Products
Volume 34, Issue 2
Pages 1286–1292
doi:10.1016/j.indcrop.2010.08.003

Bates, P.D., and Browse, J.
2011
The pathway of triacylglycerol synthesis through phosphatidylcholine in Arabidopsis produces a bottleneck for the accumulation of unusual fatty acids in transgenic seeds
The Plant Journal
Volume 68, Issue 3
Pages 387–399
DOI: 10.1111/j.1365-313X.2011.04693.x

Publications in 2010

Zhang, J., Martin, J.M., Beecher, B., Lu, C., Hannah, L.C., Wall, M.L., Altosaar, I., and Giroux, M.J.
2010
The ectopic expression of the wheat Puroindoline genes increase germ size and seed oil content in transgenic corn.
Plant Molecular Biology
Volume 74, Issue 74
Page 353-365
doi: 10.1007/s11103-010-9679-3

Yang, P., Li, X., Shipp, M.J., Shockey, J.M., and Cahoon, E.B.
2010
Draft genome sequence of the oilseed species Ricinus communis
Nature Biotechnology
Volume 28
Pages 951-956
doi:10.1038/nbt.1674

Wallis, J.G., and Browse, J.
2010
Lipid biochemists salute the genome
The Plant Journal
Volume 61
Page 1092-1106
doi: 10.1111/j.1365-313X.2010.04125.x

Lu, C., Wallis, J.G., and Browse, J.
2010
Construction of a Full-Length cDNA Library from Castor Endosperm for High-Throughput Functional Screening
Methods in Molecular Biology - CDNA Libraries
Volume 729
Page 37-52
doi: 10.1007/978-1-61779-065-2_3

Li-Beisson, Y.S., B.; Beisson, F.; Bates, P.D.
2010
Acyl-Lipid Metabolism
The Arabidopsis Book
Volume 8
Page 1-65
doi: http://dx.doi.org/10.1199/tab.0133

Chan, A.P., Crabtree, J., Zhao, Q., Lorenzi, H., Orvis, J., Puiu, D., Melake-Berhan, A., Jones, K.M., Redman, J., Chen, G., Cahoon, E.B., Gedil, M., Stanke, M., Haas, B.J., Wortman, J.R., Fraser-Liggett, C.M., Ravel, J., and Rabinowicz, P.D.
2010
Draft genome sequence of the oilseed species Ricinus communis
Nature Biotechnology
Volume 28
Page 951-956
doi:10.1038/nbt.1674

Browse, J.
2010
Saving the Bilayer
Science
Volume 330, Issue 6001
Page 185-186

Publications in 2009

Zhang, M., Fan, J., Taylor, D.C., and Ohlrogge, J.B.
2009
DGAT1 and PDAT1 acyltransferases have overlapping functions in Arabidopsis triacylglycerol biosynthesis and are essential for normal pollen and seed development
The Plant Cell
Volume 21 no. 12
Pages 3885-3901
doi: http:/​/​dx.​doi.​org/​10.​1105/​tpc.​109.​071795

Stalberg, K., Stahl, U., Stymne, S., and Ohlrogge, J.
2009
Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine.
BMC Plant Biology 9:60
DOI: 10.1186/1471-2229-9-60

Shanklin, J., Guy, J.E., Mishra, G., and Lindqvist, Y.
2009
Desaturases: Emerging Models for Understanding Functional Diversification of Diiron-containing Enzymes.
The Journal of Biological Chemistry
Volume 284 No 28
Pages 18559-18563

Moller, I.M., Rasmusson, A., and Browse, J.
2009
Respiration and lipid metabolism
6th Edition, Chapter 12
Page 317-348
ISBN: 978-1-60535-353-1

Lu, C., Xin, Z., Ren, Z., Miquel, M., and Browse, J.
2009
An enzyme regulating triacylglycerol composition is encoded by the ROD1 gene of Arabidopsis.
PNAS
Volume 106 no. 44
Page 18837-18842
doi: 10.1073/pnas.0908848106

Cahoon, E.B.C., T.E.; Damude, H.G.; Kinney, A.J.
2009
Chapeter 2: Modifying vegetable oils for food and non-food purposes. Oil Crops Breeding, Handbook of Plant Breeding
Oil Crops
Volume 4
Page 31-56
doi: 10.1007/978-0-387-77594-4

Bates, P.D., Durrett, T.P., Ohlrogge, J.B., and Pollard, M.
2009
Analysis of Acyl Fluxes through Multiple Pathways of Triacylglycerol Synthesis in Developing Soybean Embryos
Plant Physiology
Volume 150 no. 1
Page 55-72
doi: http:/​/​dx.​doi.​org/​10.​1104/​pp.​109.​137737

Publications in 2008

Cahoon, E.B., and Schmid, K.M.
2008
Metabolic Engineering of the Content and Fatty Acid Composition of Vegetable Oils.
Advances in Plant Biochemistry and Molecular Biology
Volume 1
Pages 161–200
doi:10.1016/S1755-0408(07)01007-7

Burgal, J., Shockey, J., Lu, C., Dyer, J., Larson, T., Graham, I., and Browse, J.
2008
Metabolic engineering of hydroxy fatty acid production in plants: RcDGAT2 drives dramatic increases in ricinoleate levels in seed oil.
Plant Biotechnology Journal
Volume 6
Pages 819-831
doi:10.1111/j.1467-7652.2008.00361.x

Patents

Browse, J., Lu, C. & Xin, Z. (2008)

A Plant Gene Encoding a Novel Enzyme of Lipid Metabolism and Methods of Use, US Provisional Patent Application 61/033,742.

Browse, J. A., Lu, C. & Xin, Z. (2011)

Compositions and Methods for Differential Regulation of Fatty Acid Unsaturation in Membrane Lipids and Seed Oil. PCT/US09/36066

Shanklin, J., Nguyen, T. & Walsh, T. (2011)

Accumulation of omega-7 fatty acids in plant seeds, Patent: PCT/US2011/041759

Shanklin, J., Rawat, R. & Yu, X.-H. (2011)

Use of the MISTIC Polypeptide Tag as an N-terminal Fusion with Fatty Acid Hydroxylase for Expression in Plants for Enhancement of Seed Germination

Browse, J. A., Shockey, J. & Burgal, J. (2012)

Enhancement of Hydroxy Fatty Acid Accumulation in Oilseed Plants. US 8,101,818 B2

Plant Journal Magazine

Bates, P.D., and Browse, J. (2011). The pathway of triacylglycerol synthesis through phosphatidylcholine in Arabidopsis produces a bottleneck for the accumulation of unusual fatty acids n transgenic seeds. The Plant journal : for cell and molecular biology 68, 387-399.

Plant Journal Magazine

Shanklin, J., Guy, J., Mishra, G., and Lindqvist, Y. (2009) Desaturases: Emerging Models for Understanding Functional Diversification of Diiron-containing Enzymes. J Biol Chem 284, 18559-18563.

Plant Journal Magazine

Chan, A. P., Crabtree, J., Zhao, Q., Lorenzi, H., Orvis, J., Puiu, D., Melake-Berhan, A., Jones, K. M., Redman, J., Chen, G., Cahoon, E. B., Gedil, M., Stanke, M., Haas, B. J., Wortman, J. R., Fraser-Liggett, C. M., Ravel, J., and Rabinowicz, P. D. (2010) Draft genome sequence of the oilseed species Ricinus communis. Nat Biotechnol 28, 951-956.