Variant analysis and visualization

• Interactive phylogeographic visualization of SARS-CoV-2 genomic evolution and epidemic spread
• Includes global as well as various regional-level analyses (by continents, countries, etc.)
• Shows distribution of both nucleotide and amiono acid mutations across the viral genome
• Data derived from GISAID

• Powered by GISAID, provides a database for amino acid variations
• Based on GLUE (Genes Linked by Underlying Evolution), a data-centric bioinformatics environment for virus sequence data
• Allows users to submit their own sequneces (FASTA files) for phylogenetic placement and genome visualiation

• Continuous evaluation of the viral lineages circulating in the UK
• Each unique viral sequence and its frequency can be traced through time and space using interactive map and phylogeny

• Visualization tool providing the distribution of SNPs and homoplasies across the genome
• Tree can be pruned by sampling locations
• Data derived from GISAID; latest update, 04/06/2020
• Published in: https://doi.org/10.1016/j.meegid.2020.104351

• A collection of tools for analyzing and visualizing mutations of interest in the spike (e.g., Spike 614) and other proteins
• Includes geographic and phylogenetic distribution, variant accumilatoion over time, sequence locator, etc.
• Data drawn from GISAID
• Published in: https://doi.org/10.1016/j.cell.2020.06.043

• Visualizes the distribution and statistics calculated from SARS-CoV-2 strains compared against a reference genome
• Contains also spatiotemporal dynamics, phylogeny, and haplotype network analyses
• Part of CNCB/NGDC Resource for Coronavirus 2019 (RCoV19)