nucovid logo   NU COVID-19 Resource Collection

Community and resource collection

TitleURLFeatures
NIH Open-Access Data and Computational Resources to Address COVID-19 https://datascience.nih.gov/covid-19-open-access-resources
  • Provides links to open-access data, computational, and supporting resources
  • Focuses primarily on resources based in the US and highlights those that are NIH funded
EBSCO COVID-19 Information https://covid-19.ebscomedical.com
  • Includes links to other visualization and geolocation resources
  • Also includes govermental, non-govermental, as well as news and publication information
Coronavirus Disease Research Community @ Zenodo https://zenodo.org/communities/covid-19/search?page=1&size=20
  • Zenodo enables sharing and preservation of multidisciplinary research results safely; developed and operated by CERN; part of OpenAIRE
  • Includes COVID-19 related communities and platforms for uploading research materials
International registry of research data repositories @ re3data.org https://www.re3data.org/search?query=COVID-19 (COVID-19 search URL)
  • Contains links to outside data repositories
  • Search results can be filtered by various criteria such as "data access", "database licenses", etc.
  • Search result includes those unrelated to SARS-CoV-2
Novel 2019 coronavirus @ Virological.org https://virological.org/c/novel-2019-coronavirus/33
  • Posting of analysis and discussion of SARS-CoV-2
  • Virological.org is a discussion forum for analysis and interpretation of viral molecular evolution and epidemiology administered by Andrew Rambaut (University of Edinburgh)
ProMED: Latest on COVID-19 https://promedmail.org/coronavirus/
COVID-19 Collaboration Center https://www.covidcollaborationcenter.com
  • Built by software engineers and scientists at scientist.com to empower researchers, protect healthcare workers and help cure this disease
  • Lists include Research, Suppliers, Funding, Trackers, Literature, PPE, and Consortia
CDC SARS-CoV-2 Sequencing Resources https://github.com/CDCgov/SARS-CoV-2_Sequencing
  • A crowd-sourced collection of information, documentation, protocols and other resources for public health laboratories intending to sequence SARS-CoV-2 samples
  • Also includes bioinforamtics tools/workflows, quality-management best practices, submitting public sequence repositories, etc.
Coronavirus Method Development Community @ protocols.io https://www.protocols.io/groups/coronavirus-method-development-community/publications?sort=views
  • Community-based development and sharing of methods related to SARS-CoV-2 research
  • Includes lists of publications, discussions, and resources related to methods and protocols
  • Funded by CZI
CZI COVID-19 Response https://chanzuckerberg.com/covid-19/
  • List of CZI-supported projects
  • Includes Chan Zuckerberg Biohub, Bay Area Pandemic Consortium, IDseq, and more
COVID-19 Open Research Dataset Challenge (CORD-19) https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge

https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge/tasks (Tasks)
  • An AI challenge with AI2, CZI, MSR, Georgetown, NIH and The White House for developing data and text-mining tools that can help the medical community develop answers to high priority scientific questions related COVID-19
  • CORD-19 dataset represents the most extensive machine-readable coronavirus literature collection available for data mining
COVID-19 Maps and Visuals https://www.cidrap.umn.edu/covid-19/maps-visuals
  • Contains various informational maps about the pandemic and other data visualizations
COVID-19 Open-Source Help Desk https://covid-oss-help.org
  • For domain experts fighting COVID-19 who make use of open-source software in their work
  • Timely help can be obtained from the authors and maintainers of major open-source scientific computing packages