% SAM: /usr/export/sam3.4.i686-linux/bin/hmmscore v3.4 (July 31, 2003) compiled 09/18/03_12:09:49 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % ATH1.pep2 Host: node12.unl.edu Fri Aug 25 01:14:17 2006 % moriyama Dir: /data/user/gpcr/Arabidopsis/SAM % --------------------------------------------------------------------- % Model File: gpcr.mod % Inserted Files: % Database Files: ../ATH1.pep2 % MODLIBMOD gpcr.mod ATH1.pep2 model number 1 % Calibration data for 28952 database sequences % 13258 of 28952 scores > calibrate_threshold (0) used. model_file gpcr.mod lambda 0.893226 tau 0.961305 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD