— by Moriyama, E. N., Strope, P. K., Opiyo, S. O., Chen, Z. and Jones, A. M. (under review in
| Group | TAIR Locus | Length | Description |
|---|
| [Multiple members from a big gene family (> 5 members)] |
| Nodulin MtN3 family | At1g21460.1 | 247 |
68414.m02683 nodulin MtN3 family protein contains similarity to MTN3 (nodule development protein) GB:Y08726 GI:1619601 from [Medicago truncatula] |
| | At3g16690.1 | 230 |
68416.m02132 nodulin MtN3 family protein contains Pfam PF03083 MtN3/saliva family |
| | At3g28007.1 | 251 |
68416.m03496 nodulin MtN3 family protein contains Pfam PF03083 MtN3/saliva family; similar
to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from
[Lilium longiflorum] |
| | At3g48740.1 | 289 |
68416.m05322 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule
development) from [Medicago truncatula] |
| | At4g25010.1 | 281 |
68417.m03588 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule
development) from [Medicago truncatula] |
| | At5g13170.1 | 292 |
68418.m01508 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule
development) from [Medicago truncatula]; identical to cDNA senescence-associated protein (SAG29)
mRNA, partial cds GI:4426938 |
| | At5g23660.1 | 285 |
68418.m02774 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule
development) from [Medicago truncatula] |
| | At5g50800.1 | 294 |
68418.m06293 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule
development) from [Medicago truncatula] |
| MLO family | At1g11000.1 | 573 |
68414.m01263 seven transmembrane MLO family protein / MLO-like protein 4 (MLO4) identical
to membrane protein Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At1g26700.1 | 554 |
68414.m03252 seven transmembrane MLO family protein / MLO-like protein 14 (MLO14)
identical to membrane protein Mlo14 [Arabidopsis thaliana]
gi|14091598|gb|AAK53807; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At1g42560.1 | 467 |
68414.m04907 seven transmembrane MLO family protein / MLO-like protein 9 (MLO9) nearly
identical to membrane protein Mlo9 [Arabidopsis thaliana] GI:14091588;
similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At2g33670.1 | 501 |
68415.m04126 seven transmembrane MLO family protein / MLO-like protein 5 (MLO5) identical
to MLO-like protein 5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At2g44110.1 | 496 |
68415.m05485 seven transmembrane MLO family protein / MLO-like protein 15 (MLO15) identical
to MLO-like protein 15 (AtMlo15) SP:O80580 from [Arabidopsis thaliana];
similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At4g24250.1 | 478 |
68417.m03480 seven transmembrane MLO family protein / MLO-like protein 13 (MLO13)
identical to membrane protein Mlo13 [Arabidopsis thaliana]
gi|14091596|gb|AAK53806; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| | At5g53760.1 | 573 |
68418.m06680 seven transmembrane MLO family protein / MLO-like protein 11 (MLO11)
identical to membrane protein Mlo11 [Arabidopsis thaliana] gi|14091592|gb|AAK53804; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] |
| Expressed protein family 1 | At1g77220.1 | 484 |
68414.m08994 expressed protein contains Pfam profile PF03619: Domain of unknown function |
| | At4g21570.1 | 294 |
68417.m03120 expressed protein contains Pfam profile PF03619: Domain of unknown function |
| [Multiple members from a small gene family] |
| TOM3 family | At1g14530.1 | 293 |
68414.m01723 tobamovirus multiplication protein 3, putative / TOM3, putative (THH1)
identical to THH1 (GI:15706301) [Arabidopsis thaliana]; supporting cDNA gi|15706300|dbj|AB057678.1| |
| | At2g02180.1 | 303 |
68415.m00154 tobamovirus multiplication protein 3 (TOM3) identical to tobamovirus
multiplication protein (TOM3) GI:15425641 from [Arabidopsis thaliana] |
| | At4g21790.1 | 291 |
68417.m03152 transmembrane protein-related (TOM1) contains some similarity to
transmembrane protein TOM3 GI:15425641 from [Arabidopsis thaliana]; identical to cDNA TOM1 GI:9967414 |
| GNS1/SUR4 membrane family | At1g75000.1 | 281 |
68414.m08707 GNS1/SUR4 membrane family protein contains Pfam profile PF01151: GNS1/SUR4 family |
| | At3g06470.1 | 278 |
68416.m00749 GNS1/SUR4 membrane family protein similar to SP|P39540 Elongation of fatty
acids protein 1 {Saccharomyces cerevisiae}; contains Pfam profile PF01151: GNS1/SUR4 family |
| | At4g36830.1 | 289 |
68417.m05223 GNS1/SUR4 membrane family protein weak similarity to long chain
polyunsaturated fatty acid elongation enzyme [Isochrysis galbana] GI:17226123; contains Pfam profile PF01151: GNS1/SUR4 family |
| Expressed protein family 2 | At1g10660.1 | 320 |
68414.m01208 expressed protein |
| | At2g47115.1 | 300 |
68415.m05884 expressed protein |
| | At5g62960.1 | 347 |
68418.m07899 expressed protein |
| Perl1-like family | At1g16560.1 | 342 |
68414.m01983 Per1-like family protein contains Pfam profile PF04080: Per1-like |
| | At5g62130.1 | 343 |
68418.m07798 Per1-like protein-related |
| Expressed protein family 3 | At3g09570.1 | 439 |
68416.m01137 expressed protein |
| | At5g42090.1 | 439 |
68418.m05124 expressed protein |
| Expressed protein family 4 | At1g49470.1 | 302 |
68414.m05544 expressed protein contains Pfam profile PF04819: Family of unknown function
(DUF716) (Plant viral-response family) |
| | At5g19870.1 | 276 |
68418.m02363 expressed protein contains Pfam profile PF04819: Family of unknown function
(DUF716) (Plant viral-response family) |
| Expressed protein family 5 | At3g63310.1 | 239 |
68416.m07121 expressed protein low similarity to N-methyl-D-aspartate receptor-associated
protein [Drosophila melanogaster] GI:567104; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 |
| | At4g02690.1 | 248 |
68417.m00364 hypothetical protein low similarity to N-methyl-D-aspartate
receptor-associated protein [Drosophila melanogaster] GI:567104, NMDA
receptor glutamate-binding subunit [Rattus sp.] GI:8248741; contains Pfam profile PF01027: Uncharacterized prote |
| [Single copy genes] |
| GCR1 | At1g48270.1 | 326 |
68414.m05392 G protein coupled receptor-related identical to putative G protein coupled
receptor GI:2104224 from [Arabidopsis thaliana] |
| | At1g57680.1 | 362 |
68414.m06545 expressed protein |
| | At2g41610.1 | 310 |
68415.m05142 expressed protein |
| | At2g31440.1 | 250 |
68415.m03841 expressed protein identical to cDNA endonuclease III homologue (nth1 gene)
GI:11181951 |
| | At3g04970.1 | 397 |
68416.m00540 zinc finger (DHHC type) family protein similar to Golgi-specific DHHC zinc
figer protein [Mus musculus] GI:21728103; contains Pfam profile PF01529: DHHC zinc finger domain |
| RGS1 | At3g26090.1 | 459 |
68416.m03249 expressed protein |
| | At3g59090.1 | 367 |
68416.m06587 expressed protein |
| | At4g20310.1 | 513 |
68417.m02966 peptidase M50 family protein / sterol-regulatory element binding protein
(SREBP) site 2 protease family protein weak similarity to SP|O54862
Membrane-bound transcription factor site 2 protease (EC 3.4.24.-) (Sterol-regulatory element-binding |
| [Single member from a small gene family] |
| | At2g01070.1 | 496 |
68415.m00013 expressed protein similar to membrane protein PTM1 precursor isolog GB:AAB65479 |
| | At3g19260.1 | 296 |
68416.m02443 longevity-assurance (LAG1) family protein similar to Alternaria stem canker
resistance protein (ASC1) [Lycopersicon esculentum] GI:7688742; contains Pfam
profile PF03798: Longevity-assurance protein (LAG1) |
| | At2g35710.1 | 497 |
68415.m04380 glycogenin glucosyltransferase (glycogenin)-related low similarity to
glycogenin-2 from Homo sapiens [SP|O15488] |
| | At2g16970.1 | 414 |
68415.m01955 expressed protein; expression supported by MPSS |
| | At1g15620.1 | 343 |
68414.m01877 expressed protein ; expression supported by MPSS |
| | At1g63110.2 | 397 |
68414.m07132 cell division cycle protein-related contains 9 transmembrane domains; similar
to PIG-U (GI:27372215) [Rattus norvegicus]; similar to Cell division cycle
protein 91-like 1 (CDC91-like 1 protein) (PIG-U) (Swiss-Prot:Q9H490) [Hom sapiens] |
| | At4g36850.1 | 374 |
68417.m05225 PQ-loop repeat family protein / transmembrane family protein similar to
SP|Q10482 Seven transmembrane protein 1 {Schizosaccharomyces pombe}; contains
Pfam profile PF04193: PQ loop repeat |
| | At5g27210.1 | 297 |
68418.m03246 expressed protein weak similarity to seven transmembrane domain orphan
receptor [Mus musculus] GI:4321619 |
| [Single member from a large gene family] |
| | At1g71960.1 | 662 |
68414.m08318 ABC transporter family protein similar to breast cancer resistance protein
GB:AAC97367 from [Homo sapiens] |
| | At3g01550.1 | 383 |
68416.m00085 triose phosphate/phosphate translocator, putative similar to
SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower]{Brassica oleracea} |
| | At5g23990.1 | 657 |
68418.m02819 ferric-chelate reductase, putative similar to ferric-chelate reductase (FRO1)
[Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane component |
| | At5g37310.1 | 564 |
68418.m04481 endomembrane protein 70, putative multispanning membrane protein, Homo sapiens, EMBL:HSU94831 |