# hmmscan :: search sequence(s) against a profile database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             exampleData/Preprocess/protein_reformatted.fa
# target HMM database:             Pfam-A.hmm
# output directed to file:         exampleData/Preprocess/hmmer_out.txt
# per-dom hits tabular output:     exampleData/Preprocess/hmmer_out_domain.txt
# prefer accessions over names:    yes
# domain reporting threshold:      E-value <= 1
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       gi|31980626|ref|NP_058038.2|  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-36  121.8   0.3    1.5e-24   85.5   0.0    2.6  2  PF02196.10  Raf-like Ras-binding domain
    9.3e-30  103.1   2.6    1.4e-29  102.5   2.6    1.3  1  PF00615.14  Regulator of G protein signaling domain
    8.9e-07   28.0   0.0    2.1e-06   26.8   0.0    1.7  1  PF02188.12  GoLoco motif
  ------ inclusion threshold ------
       0.13   12.5   0.2       0.27   11.5   0.2    1.5  1  PF07631.6   Protein of unknown function (DUF1592)


Domain annotation for each model (and alignments):
>> PF02196.10  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0     4e-28   1.5e-24       1      71 []     303     374 ..     303     374 .. 0.98
   2 !   33.9   0.0   5.2e-12   1.9e-08      13      69 ..     388     444 ..     385     445 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 4e-28
                                   -EEEEEETTTEEEEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEE.EEEEE-TTSBGGGGTTSEEEEEE- CS
                    PF02196.10   1 ktirvhLPnnqrsvvevrpGmtvrDaLskalkrrgLnpsacaVrlvg.ekkpldletdissLpgeelivell 71 
                                   k+++v+LP++++s++ +rpG t+rD+L++++++rgL++++++V+lvg e+k+l+l++d+++L+++e+++e++
  gi|31980626|ref|NP_058038.2| 303 KYCCVYLPDGTASLALARPGLTIRDMLAGICEKRGLSLPDIKVYLVGnEQKALVLDQDCTVLADQEVRLENR 374
                                   79********************************************************************96 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 5.2e-12
                                   EEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEEEEEEE-TTSBGGGGTTSEEEEE CS
                    PF02196.10  13 svvevrpGmtvrDaLskalkrrgLnpsacaVrlvgekkpldletdissLpgeelive 69 
                                   +++ ++p++++++aL+++l+++gL+++ + + + gek+p+dle + ss++++ l+++
  gi|31980626|ref|NP_058038.2| 388 VRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSVASQTLVLD 444
                                   6789************************************************99986 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   2.6   3.8e-33   1.4e-29       1     118 []      67     183 ..      67     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3.8e-33
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHH CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylapsspkelnidkklreelekn 79 
                                   s+e+ll+d+ g+ +F+eFl++efs en+ Fw+a+e+f++   ++ ++l ++a++Iy ++l++++ + +nid+++    e+ 
  gi|31980626|ref|NP_058038.2|  67 SFERLLQDPRGLAYFTEFLKKEFSAENVTFWKACERFQQIpaSDTKQLAQEAHNIYHEFLSSQALSPVNIDRQAW-LSEEV 146
                                   799*************************************88888999999***********************9.44555 PP

                                   HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   l   qp +++f + q ++f+l++ dsy +F+ks+ly+++
  gi|31980626|ref|NP_058038.2| 147 LA--QPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYQEC 183
                                   55..5*******************************985 PP

>> PF02188.12  GoLoco motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.7e-10   2.1e-06       2      23 .]     501     522 ..     500     522 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.7e-10
                    PF02188.12   2 edFfdLlaraQssRlDDQRcsl 23 
                                   e++++Ll+r+Qss  +DQR++l
  gi|31980626|ref|NP_058038.2| 501 EGLVELLNRVQSSGAHDQRGLL 522
                                   99******************97 PP

>> PF07631.6  Protein of unknown function (DUF1592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   7.3e-05      0.27      38     104 ..      64     129 ..      56     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
                     PF07631.6  38 leaqveRmLadprakrfveeFveqwlelerldslkpdkekfpefdeelreamreeteeffeellren 104
                                    ++ +eR+L+dpr  + ++eF+++ +  e+++  k   e+f+++ ++  +++++e +++ +e+l+++
  gi|31980626|ref|NP_058038.2|  64 WAQSFERLLQDPRGLAYFTEFLKKEFSAENVTFWKA-CERFQQIPASDTKQLAQEAHNIYHEFLSSQ 129
                                   57899**************************99986.567899988888999999999988887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       281  (0.0189468); expected 296.6 (0.02)
Passed bias filter:                      247  (0.0166543); expected 296.6 (0.02)
Passed Vit filter:                        25  (0.00168566); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.42s 00:00:01.41 Elapsed: 00:00:00.44
# Mc/sec: 3245.12
//
Query:       gi|194306551|ref|NP_001123624.1|  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-69  233.3   0.2    1.4e-69  233.3   0.2    2.1  2  PF09128.6   Regulator of G protein signalling-like domain
    2.7e-39  134.9   0.0    5.8e-39  133.8   0.0    1.6  1  PF00621.15  RhoGEF domain
  ------ inclusion threshold ------
        0.1   12.5   1.2       0.99    9.3   0.2    2.7  2  PF15405.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.2   2.8e-73   1.4e-69       1     188 []      40     230 ..      40     230 .. 0.99
   2 ?   -0.6   0.3      0.16   7.9e+02      83     138 ..     583     637 ..     507     654 .. 0.73

  Alignments for each domain:
  == domain 1  score: 233.3 bits;  conditional E-value: 2.8e-73
                                       HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHH CS
                         PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseel 77 
                                       q+s+Fqsle++K+rPahL+++l++v++qf+P+pll++L+ad+ +s ++Kea++++l+++++Fl++ta+l+v+v+ ++
  gi|194306551|ref|NP_001123624.1|  40 QNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSV 116
                                       79*************************************************************************** PP

                                       HHHH...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH....HHHHHHH CS
                         PF09128.6  78 aadierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra....kErrvae 150
                                       a++++r+r++l++e+++rr++qe+ q++++++++qledfr+Kr mG++ +e+el++l+ +++kdr     +Er+vae
  gi|194306551|ref|NP_001123624.1| 117 AFELDRTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGnyeaRERHVAE 193
                                       *****************************************************************9999******** PP

                                       HHHHHHHHHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                         PF09128.6 151 kllskleeilstsskteeeksstlqyailtylkhlgvk 188
                                       +lls+lee+++t+s+ +eeks+++++ai++y++hlgv+
  gi|194306551|ref|NP_001123624.1| 194 RLLSHLEETQHTIST-DEEKSAAVVTAISLYMRHLGVR 230
                                       **********99998.9*******************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
                                       ..HHHHHTT---HHHHHHHHHHHHHHHHHH..HHHHHHHHHTT-GGGGTTTGGGG..- CS
                         PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkq..ledfrqKrsmGLgllegeldkldqel 138
                                       +r + + ++e +r++l +++q+v  ++++   l+d++  r + L++l ++ d + +e 
  gi|194306551|ref|NP_001123624.1| 583 ERGKVELAAECCREILHHVNQAVR-DMEDLlrLKDYQ--RRLDLTHLRQSSDPMLSEF 637
                                       444455677888999888887665.445440155554..6788888888877665544 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.2e-42   5.8e-39       1     180 []     419     603 ..     419     603 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.2e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTT.SS----HHH CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkek.kdaqkigdv 76 
                                       vi El+ tE ++vr L+vl++ +++p+     +++ +e+++iF+ ++e++++h+ fl++L +r +e+   +++igdv
  gi|194306551|ref|NP_001123624.1| 419 VISELLVTEAAHVRMLRVLHDLFYQPMAD-GGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESgYLIEEIGDV 494
                                       799*************************9.8*******************************99555599******* PP

                                       HHHHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  77 flklee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       +l++ +      f+k+ s ++s+++ al+ lk +++k+++f +f++eae++p++++l+L++++ + +qRl++YplLL
  gi|194306551|ref|NP_001123624.1| 495 LLARFDgaegswFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL 571
                                       *99666699******************************************************************** PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       + + ++t+es+ ++ ++e a e+++e+++++N+
  gi|194306551|ref|NP_001123624.1| 572 QSIGQNTEEST-ERGKVELAAECCREILHHVNQ 603
                                       *******9887.9*******************7 PP

>> PF15405.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0002      0.99       1      34 [.     647     679 ..     647     693 .. 0.89
   2 ?    0.6   0.0     0.096   4.8e+02     111     133 ..     734     756 ..     700     758 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                         PF15405.1   1 lifkgqlkkkegsksesadiqvyLfDhalLlvki 34 
                                       l+++g+l  + ++++   +++v L+D +lLl++ 
  gi|194306551|ref|NP_001123624.1| 647 LVHEGPLTWRVTKDKAI-EVHVLLLDDLLLLLQR 679
                                       79*********999665.************9875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.096
                         PF15405.1 111 gyeltLyastlaarqkwlekIek 133
                                        + + L a+t ++r++w++ I++
  gi|194306551|ref|NP_001123624.1| 734 AQIYELVAQTSSERKNWCNLITE 756
                                       3447899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       441  (0.029735); expected 296.6 (0.02)
Passed bias filter:                      327  (0.0220484); expected 296.6 (0.02)
Passed Vit filter:                        23  (0.00155081); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.56u 0.64s 00:00:02.20 Elapsed: 00:00:00.55
# Mc/sec: 4366.37
//
Query:       gi|78711830|ref|NP_796052.2|  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-66  223.4   0.0    4.8e-66  222.5   0.0    1.5  1  PF00069.20  Protein kinase domain
    9.1e-27   93.7   0.0    1.4e-26   93.1   0.0    1.2  1  PF07714.12  Protein tyrosine kinase
    1.1e-20   73.8   6.4    2.2e-20   72.9   6.4    1.5  1  PF00615.14  Regulator of G protein signaling domain
    1.2e-10   41.4   0.1      4e-10   39.8   0.1    1.9  1  PF00169.24  PH domain
     0.0079   16.4   0.2       0.18   12.0   0.2    2.5  1  PF15413.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.0   1.6e-69   4.8e-66       2     260 .]     192     453 ..     191     453 .. 0.94

  Alignments for each domain:
  == domain 1  score: 222.5 bits;  conditional E-value: 1.6e-69
                                   EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.S...STTB--EEEEEEESSEEEEEEE CS
                    PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalrElkilkkl.n...Hpnivkllevfeekdelylvle 78 
                                   ++++++G+G+fG+Vy +++ +tgk++A+K+l+k++ k+k+ +t ++  +i+ +l +   +p+iv +  +f++ d+l+++l+
  gi|78711830|ref|NP_796052.2| 192 SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRVKMKQGETLALNERIMLSLvStgdCPFIVCMTYAFHTPDKLCFILD 272
                                   6899************************************9998886666666634666********************** PP

                                   --TTEBHHHHHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS- CS
                    PF00069.20  79 yveggdlfdllkkkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttlv 159
                                   +++ggd++ +l+++g++se+e++++a++i+ gle++H   +++rDLKp+NiLlde g+++i+D+Gla+    s++k +  v
  gi|78711830|ref|NP_796052.2| 273 LMNGGDMHYHLSQHGVFSEKEMRFYASEIILGLEHMHTCFVVYRDLKPANILLDEYGHVRISDLGLAC--DFSKKKPHASV 351
                                   *******************************************************************9..7999999**** PP

                                   S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHHHH CS
                    PF00069.20 160 gtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepkssskseelkdlikkl 240
                                   gt+ YmAPEvl+k++ y++++D++slG++l++ll g+ pf++++++d++e+ r++l+ +++ +   s    +el++l++ l
  gi|78711830|ref|NP_796052.2| 352 GTHGYMAPEVLQKGTCYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVQLPDAFS----PELRSLLEGL 428
                                   *********************************************************9999998877....9********* PP

                                   T-SSGGGSTT.....HHHHHCSGGH CS
                    PF00069.20 241 lekdpakRlt.....aeeilkhpwl 260
                                   l++d ++Rl      a+e+++h ++
  gi|78711830|ref|NP_796052.2| 429 LQRDVSQRLGcggggARELKEHIFF 453
                                   *********9888888999998776 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   4.7e-30   1.4e-26       3     249 ..     193     436 ..     191     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 4.7e-30
                                   EEEEEEEESSEEEEEEEEETTTTSTEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTC....-BTTB--EEEEEESSSSEEE CS
                    PF07714.12   3 lgkklGeGafGeVvegtlkgekekkevkVavKtlkeeaeeee.keefleeakimkkl....khenivkllgvctkeeplli 78 
                                   +++ +G+G fGeV+ ++      ++    a+K l+++  +++  e +  + +im +l    +++ iv +  +  + ++l++
  gi|78711830|ref|NP_796052.2| 193 VHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRVKMKqGETLALNERIMLSLvstgDCPFIVCMTYAFHTPDKLCF 269
                                   6789**********99988....777788999995544333313444334444433223258999*****999999***** PP

                                   EEE--TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEE CS
                    PF07714.12  79 vteyvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyy 159
                                   ++++++gGd++ +L ++    ++ +++  +a +i  G+e++++  +v rdL   N+Ll+e ++v+isD GLa d     ++
  gi|78711830|ref|NP_796052.2| 270 ILDLMNGGDMHYHLSQH--GVFSEKEMRFYASEIILGLEHMHTCFVVYRDLKPANILLDEYGHVRISDLGLACDF----SK 344
                                   ****************9..99******************************************************....33 PP

                                   EETTTSECGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTS-GTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHH CS
                    PF07714.12 160 kkkekaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypgl..sneevleklkegkrlekpencpeelyel 237
                                   kk + +     +mapE+l++++ + s +D +s G +l+ ++  g+sp+ +   ++++ +++++   +++ p+  ++el +l
  gi|78711830|ref|NP_796052.2| 345 KKPHASVGTHGYMAPEVLQKGTcYDSSADWFSLGCMLFKLLR-GHSPFRQHktKDKHEIDRMTLTVNVQLPDAFSPELRSL 424
                                   55556667889*********98799999*************9.99**99884345556778888889999*********** PP

                                   HHHHT-SSGGGS CS
                    PF07714.12 238 mkqCweeepekR 249
                                   ++  ++++ ++R
  gi|78711830|ref|NP_796052.2| 425 LEGLLQRDVSQR 436
                                   *99999999998 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   6.4   7.4e-24   2.2e-20       2     118 .]      55     174 ..      54     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 7.4e-24
                                   HHHHHCSHHHHHHHHHHHHHTTCT..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHHH CS
                    PF00615.14   2 leslledqpgrslFreFlesefse..enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreelekn 79 
                                   ++++++++ g+ lF++F+ +e  e   +++F+++++e++k +++e++ ++ +++y++y++++  ++  +++k+++e+++++
  gi|78711830|ref|NP_796052.2|  55 FDKIFNQKIGFLLFKDFCLNEIGEavPQVKFYEEIKEYEKLDNEEDRLRRSRQMYDAYIMRELLSSThQFSKQAVEHVQSH 135
                                   99*******************99999**************************************8888************* PP

                                   HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   l+k+q + +lf+ + ee++e l+ d ++kF++s++++r+
  gi|78711830|ref|NP_796052.2| 136 LSKKQVTATLFQPYIEEICESLRGDIFQKFMESDKFTRF 174
                                   ************************************986 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   1.3e-13     4e-10       1      99 [.     559     647 ..     559     650 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.3e-13
                                   ECEEEEEEEEE.TTSSSEEEEEEEEETTEEEEESSTTTTCESSESEEEESTTE.EEEEECTTTCSTTSSSSEEEEEEETTS CS
                    PF00169.24   1 vikeGyllkks.ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndc.tvkkasstkfgaqkesnnyfeitfknv 79 
                                   +i++Gy+lk +   l +w++ryf+L+ n+L++  + +     + +    ++++ +v++++        +++ ++ ++ k +
  gi|78711830|ref|NP_796052.2| 559 CIMHGYMLKLGnPFLTQWQRRYFYLFPNRLEWRGEGE-----SRQSLLTMEQImSVEETQI-------KDRKCILLRIKGG 627
                                   89******************************99996.....7888899999955555555.......4899********* PP

                                   EEEEEEESSHHHHHHHHHHH CS
                    PF00169.24  80 esyllsaeseeerkrWvqal 99 
                                   ++++l++es+ e+ +W++ l
  gi|78711830|ref|NP_796052.2| 628 KQFVLQCESDPEFAQWLKEL 647
                                   *****************987 PP

>> PF15413.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   6.1e-05      0.18       1      48 [.     561     605 ..     561     649 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.1e-05
                     PF15413.1   1 ikGylkkkgskllkgWkrrwfiLrkdnvleYyksprdksdvalitkes 48 
                                   ++Gy+ k g+ +l  W+rr+f L   n+le+  +  ++s  +l+t e+
  gi|78711830|ref|NP_796052.2| 561 MHGYMLKLGNPFLTQWQRRYFYLF-PNRLEWRGE--GESRQSLLTMEQ 605
                                   69**********************.999999988..555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       515  (0.0347246); expected 296.6 (0.02)
Passed bias filter:                      369  (0.0248803); expected 296.6 (0.02)
Passed Vit filter:                        32  (0.00215764); expected 14.8 (0.001)
Passed Fwd filter:                         5  (0.000337132); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.40u 0.73s 00:00:02.13 Elapsed: 00:00:00.61
# Mc/sec: 2944.11
//
Query:       gi|29789076|ref|NP_056627.1|  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-33  115.7   0.5    1.2e-33  115.7   0.5    2.5  2  PF00615.14  Regulator of G protein signaling domain
    1.5e-16   59.9   0.0    5.1e-16   58.1   0.0    1.9  1  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
      9e-15   54.1   0.1    2.2e-14   52.9   0.1    1.7  1  PF00631.17  GGL domain
  ------ inclusion threshold ------
      0.021   14.6   0.0       0.12   12.1   0.0    2.0  2  PF06718.6   Protein of unknown function (DUF1203)
        1.2    9.0   4.3        2.8    7.8   1.3    2.5  2  PF02234.14  Cyclin-dependent kinase inhibitor


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.9      0.42   1.2e+03      33      33 ..     216     216 ..     146     299 .. 0.58
   2 !  115.7   0.5     4e-37   1.2e-33       1     118 []     336     450 ..     336     450 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.42
                                   H CS
                    PF00615.14  33 a 33 
                                   +
  gi|29789076|ref|NP_056627.1| 216 D 216
                                   2 PP

  == domain 2  score: 115.7 bits;  conditional E-value: 4e-37
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   s++++l+dq gr  F  Flesefs+enl+Fwl v+++kk+ + +++ k+++eI++++lap++p+ +n+d++  e +++n++
  gi|29789076|ref|NP_056627.1| 336 SFDEILKDQVGRDQFLRFLESEFSSENLRFWLSVQDLKKQ-PLQDVAKRVEEIWQEFLAPGAPSAINLDSHSYEITSQNVK 415
                                   79**************************************.**************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +    r +fe+aqe++++l+++dsy +Fl+s+ y++l
  gi|29789076|ref|NP_056627.1| 416 D--GGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDL 450
                                   *..*******************************975 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.7e-19   5.1e-16       1      74 []      43     113 ..      43     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.7e-19
                                   SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH--SSSSS-EEX CS
                    PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                                   gv++++ +  l+++++++tG ++v+WL++n++  ied  eA++lg+l+ +qg+i +++++  +++d+  +fY+f
  gi|29789076|ref|NP_056627.1|  43 GVPIRTVKSFLSKIPSVVTGTDIVQWLMKNLS--IEDPVEAIHLGSLIAAQGYIFPISDHVLTMKDD-GTFYRF 113
                                   89*****************************8..***************************889999.*****9 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   7.5e-18   2.2e-14       2      66 ..     256     317 ..     255     319 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 7.5e-18
                    PF00631.17   2 qlklklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccw 66 
                                   ++k+  +++i++L+ +++r+++k+Sk++e+liaY+e   ++Dp++++  +p+    Npwi+++   w
  gi|29789076|ref|NP_056627.1| 256 TTKDDIRKQITFLNAQIDRHCLKMSKVAESLIAYTEqyVEYDPFITPA-EPS----NPWISDDITLW 317
                                   7899********************************************.898....*****987777 PP

>> PF06718.6  Protein of unknown function (DUF1203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05      0.12      32     112 ..     128     211 ..     117     214 .. 0.86
   2 ?   -0.9   0.0      0.45   1.3e+03       5      18 ..     274     287 ..     273     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-05
                     PF06718.6  32 aetgpiFlaaeaceraagvdalPevlltsrdlalrgysadgriv....earlvegeeleaaleelladpevayvhvrsaan 108
                                   +  ++i+l+++  +++a   +l++  +++  ++ r++ ++ + +    ea++   ++ +++ +++l+ +e a+ +v+ +  
  gi|29789076|ref|NP_056627.1| 128 NTDYAIYLCKRTMQNKAR-LELADYEAENLARLQRAFARKWEFIfmqaEAQVKIDRKKDKTERKILDSQERAFWDVHRPVP 207
                                   5679********998888.788888879999999999998776667789999999999*********************** PP

                     PF06718.6 109 gCya 112
                                   gC +
  gi|29789076|ref|NP_056627.1| 208 GCVN 211
                                   **75 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
                     PF06718.6   5 RicLrraeeGeell 18 
                                   R+cL+ ++  e+l+
  gi|29789076|ref|NP_056627.1| 274 RHCLKMSKVAESLI 287
                                   9*******999986 PP

>> PF02234.14  Cyclin-dependent kinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.3   0.00094       2.8      11      35 ..     147     171 ..     142     175 .. 0.85
   2 ?    1.1   0.1      0.11   3.3e+02      24      35 ..     326     337 ..     320     339 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00094
                    PF02234.14  11 eleeffaaalkeqqeefseKwNFDF 35 
                                   el +  a+ l+++q++f++Kw F F
  gi|29789076|ref|NP_056627.1| 147 ELADYEAENLARLQRAFARKWEFIF 171
                                   777788899**************76 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
                    PF02234.14  24 qeefseKwNFDF 35 
                                   +++  ++w+F F
  gi|29789076|ref|NP_056627.1| 326 SQQRVKRWGFSF 337
                                   667789****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       553  (0.0372868); expected 296.6 (0.02)
Passed bias filter:                      367  (0.0247455); expected 296.6 (0.02)
Passed Vit filter:                        37  (0.00249477); expected 14.8 (0.001)
Passed Fwd filter:                         5  (0.000337132); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.14u 0.77s 00:00:01.91 Elapsed: 00:00:00.61
# Mc/sec: 2019.80
//
Query:       gi|149241017|ref|XP_921002.3|  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-40  137.2   1.8    2.8e-40  137.0   1.8    1.0  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   1.8   1.9e-44   2.8e-40       2     118 .]      22     136 ..      21     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.9e-44
                                    HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                     PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                    ++sll++q+g+ +Fr+Fl+se+seen+eFwla+e+fkk++++e++ +kak Iy++++  ++pke+nid ++r+ +++n+ 
  gi|149241017|ref|XP_921002.3|  22 MDSLLANQAGLDAFRTFLKSEYSEENVEFWLACEDFKKTECREKIATKAKTIYSEFIVADAPKEINIDFSTRDLISRNIA 101
                                    799***************************************************************************** PP

                                    S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    +  p++k+f+eaq+ +++l++kds+p+Flkse+y++l
  gi|149241017|ref|XP_921002.3| 102 E--PTPKCFDEAQKLIYSLMAKDSFPRFLKSEIYKKL 136
                                    9..*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       491  (0.0331063); expected 296.6 (0.02)
Passed bias filter:                      370  (0.0249477); expected 296.6 (0.02)
Passed Vit filter:                        20  (0.00134853); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.79s 00:00:01.47 Elapsed: 00:00:00.67
# Mc/sec: 592.19
//
Query:       gi|13385944|ref|NP_080722.1|  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-34  118.5   0.1    1.9e-34  118.2   0.1    1.1  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.1   1.3e-38   1.9e-34       1     117 [.      90     204 ..      90     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.3e-38
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   s+++l+++++grs+Fr Fl++e+seen+ Fwla+ee+k+ ++q+ + +ka+ Iy+ y++  spke+ +d+++re ++++++
  gi|13385944|ref|NP_080722.1|  90 SFDKLMHSPTGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINRKMQ 170
                                   799****************************************************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylr 117
                                   +  ps+++f++aq ++++l+++dsyp+Fl+s+ y  
  gi|13385944|ref|NP_080722.1| 171 E--PSPHTFDDAQLQIYTLMHRDSYPRFLTSPTYRS 204
                                   *..*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       503  (0.0339154); expected 296.6 (0.02)
Passed bias filter:                      214  (0.0144292); expected 296.6 (0.02)
Passed Vit filter:                        21  (0.00141595); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.64s 00:00:01.23 Elapsed: 00:00:00.66
# Mc/sec: 854.29
//
Query:       gi|23346630|ref|NP_694811.1|  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-34  118.6   0.5    1.7e-34  118.4   0.5    1.1  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.5   1.2e-38   1.7e-34       1     118 []      34     149 ..      34     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.2e-38
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   slesl+++++g  +++ +l+ e+s+en++Fw+a+e +kk ++++ ++++ak++yn y++p+sp+e+nid+ +re + k+++
  gi|23346630|ref|NP_694811.1|  34 SLESLMATKYGPIVYTAYLKLEHSDENIKFWMACETYKKIASRRGRISRAKKLYNIYIQPQSPREINIDSTTREAIIKSIR 114
                                   699****************************************************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +  p++++feeaq+ v+ ++e dsyp+Flkse+y++l
  gi|23346630|ref|NP_694811.1| 115 E--PTQTCFEEAQKIVYMHMEMDSYPRFLKSEMYQQL 149
                                   *..*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       653  (0.0440294); expected 296.6 (0.02)
Passed bias filter:                      388  (0.0261614); expected 296.6 (0.02)
Passed Vit filter:                        26  (0.00175308); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.70s 00:00:01.29 Elapsed: 00:00:00.70
# Mc/sec: 589.19
//
Query:       gi|237681187|ref|NP_056626.2|  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-38  130.2   2.7    6.3e-38  129.5   2.7    1.4  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   2.7   4.2e-42   6.3e-38       1     118 []      85     199 ..      85     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 4.2e-42
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    sle+ll++q+g ++F  Fl+sefseen+eFwla+e++kk+ e + l++ka++Iy++++++++ k++nid ++re+++k++
  gi|237681187|ref|NP_056626.2|  85 SLEKLLANQTGQNVFGRFLKSEFSEENIEFWLACEDYKKT-ETDLLHNKAENIYKAFVHSDAVKQINIDFHTRESTAKKI 163
                                    699*************************************.99************************************* PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    ++  p+++ f+eaq+ +++l+ekdsyp+Flks++yl+l
  gi|237681187|ref|NP_056626.2| 164 KT--PTPTSFDEAQKVIYSLMEKDSYPRFLKSNIYLNL 199
                                    **..*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       798  (0.0538062); expected 296.6 (0.02)
Passed bias filter:                      387  (0.026094); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.70s 00:00:01.38 Elapsed: 00:00:00.70
# Mc/sec: 779.37
//
Query:       gi|307691211|ref|NP_001182677.1|  [L=1258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-24   86.2  21.2    2.3e-09   37.3   1.3    6.5  7  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.011   1.6e+02       5      56 ..      22      74 ..      17     141 .. 0.64
   2 ?   -2.8   0.0      0.43   6.4e+03       7      37 ..     277     309 ..     275     328 .. 0.70
   3 !   11.6   0.0   1.5e-05      0.22      12     101 ..     410     496 ..     404     508 .. 0.75
   4 !   19.0   0.5   7.6e-08    0.0011      13      98 ..     670     761 ..     659     768 .. 0.89
   5 !   37.3   1.3   1.5e-13   2.3e-09       2     116 ..     846     970 ..     845     971 .. 0.83
   6 !   25.6   0.0   6.8e-10     1e-05       2     109 ..    1015    1127 ..    1014    1135 .. 0.76
   7 ?   -1.2   0.1      0.14   2.1e+03      15      44 ..    1127    1156 ..    1120    1231 .. 0.44

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.011
                                      HHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHH.HHHHHHH CS
                        PF00615.14  5 lledqpgrslFreFlesefseenleFwlaveefkkakeqeelskk.akeIynk 56
                                      l +d+ ++ +F eFl   +  e+++F  +   f+  ++  +l +k  k+I+++
  gi|307691211|ref|NP_001182677.1| 22 LATDNFLVDYFNEFLSLPTFPEAIRFNVDYGVFEVVNDAPQLLEKqLKKILQN 74
                                      444555999******99999999999999999999954444444436666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.43
                                       CSHHHHHHHHHHHHHTTCT.HHHHH.HHHHHHH CS
                        PF00615.14   7 edqpgrslFreFlesefse.enleF.wlaveef 37 
                                       +d+p   l+r +le++  + +nl + +  veef
  gi|307691211|ref|NP_001182677.1| 277 KDSPSQALLRVYLEKKGGKeRNLTLhFSSVEEF 309
                                       677788899999998765545655414456665 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 1.5e-05
                                       HHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS..TTTT CS
                        PF00615.14  12 rslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlekaqpsrk 88 
                                       ++ F++Fl+ +  e++  +w+++e++k  k+ e  +++ +++ + yl   s+ e  ++ ++ ++ +    + + + +
  gi|307691211|ref|NP_001182677.1| 410 FERFKKFLKGTLGERYWWLWMDIERLKVLKDPERHQRHLEKMKKCYL--VSSGERYLSAEILSKFKLLHGS-RWTAD 483
                                       678**************************666666677999999999..6666677777777777664444.66777 PP

                                       TTHHHHHHHHHHH CS
                        PF00615.14  89 lfeeaqeevfell 101
                                        ++++q+ev++ l
  gi|307691211|ref|NP_001182677.1| 484 HLKNIQAEVLKPL 496
                                       7777777777665 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 7.6e-08
                                       HHHHHHHHHTTCT...HHHHHHHHHHHHHTS.....SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                        PF00615.14  13 slFreFlesefse...enleFwlaveefkka.....keqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                        +F++F+e++ ++   + + Fw++ + +++       +  ++ k+a+ ++ +y+aps++  + ++++ ++ +  +++
  gi|307691211|ref|NP_001182677.1| 670 FFFTKFCENSGNKlwkHSVYFWFDLQAYHQLfyqetLQPFKVCKQAQYLFATYIAPSASFDIGLHQEGKKDIYMKIQ 746
                                       58*******9999999***************99987788899999***************************99999 PP

                                       S..TTTTTTHHHHHHHH CS
                        PF00615.14  82 kaqpsrklfeeaqeevf 98 
                                          p ++lf+ a e ++
  gi|307691211|ref|NP_001182677.1| 747 P--PFEDLFDTAEEFIL 761
                                       8..********999886 PP

  == domain 5  score: 37.3 bits;  conditional E-value: 1.5e-13
                                       HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHH CS
                        PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylapsspkelnidkklreel 76 
                                       +++ll+++  ++ Fr+Fles +s+  l  w+++e+f++   k+q+++ +k   I nkyl    +k+ ++  +  ++l
  gi|307691211|ref|NP_001182677.1| 846 FTDLLNNKLEFEHFRQFLESHSSSLDLMCWIDIEQFRRIifKDQKQREEKSIYIKNKYL----NKKYFFGPRSPASL 918
                                       889************************************9999999999999999***9....33334444333333 PP

                                       HHHHCS...............TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHH CS
                        PF00615.14  77 eknleka.............qpsrklfeeaqeevfellekdsypkFlkselyl 116
                                        ++ ++              q + +++ e+q++v++ le+   p Fl+se++ 
  gi|307691211|ref|NP_001182677.1| 919 HQQ-NQImllsggwgrilheQLDASVLVEIQKHVLNRLENVWLPLFLSSEQFA 970
                                       333.2223455788889999******************************995 PP

  == domain 6  score: 25.6 bits;  conditional E-value: 6.8e-10
                                        HHHHHCSHHHHHHHHHHHHHTTCT..HHHHHHHHHHHHHTS....SHHHHHHHHHHHHHHHHTSTTSTTSSTS-H CS
                        PF00615.14    2 leslledqpgrslFreFlesefse..enleFwlaveefkka....keqeelskkakeIynkylapsspkelnidk 70  
                                        +++ l ++   + F+ F+  + +   + + Fw++v++fk       +++ ++kk++ I+n ++++  p  l+id 
  gi|307691211|ref|NP_001182677.1| 1015 FRKALLNPVIARQFQRFVALKGDLleNGVLFWQEVQKFKDLchshCDESIIHKKITTIINCFINSYIPPALQIDI 1089
                                        6777889999999****87766655488************99994455556677************998887776 PP

                                        HHHHHHHHHHCS...TTTTTTHHHHHHHHHHHHHTHHHHH CS
                        PF00615.14   71 klreeleknleka.qpsrklfeeaqeevfellekdsypkF 109 
                                         +  + +k le+  +  + +f eaq  +f  l  + +p+F
  gi|307691211|ref|NP_001182677.1| 1090 PVE-QAQKILEHRkELGPYVFREAQMTIFGVLF-KFWPQF 1127
                                        543.4444444433599************9874.345555 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 0.14
                                        HHHHHHHTTCTHHHHHHHHHHHHHTSSHHH CS
                        PF00615.14   15 FreFlesefseenleFwlaveefkkakeqe 44  
                                        F eF ++ ++e+ ++ ++  +e k++++ +
  gi|307691211|ref|NP_001182677.1| 1127 FCEFRKNLTDEKIMSVLERRQEHKQKRKAS 1156
                                        334444444444444444444444442222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1258 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       631  (0.042546); expected 296.6 (0.02)
Passed bias filter:                      358  (0.0241386); expected 296.6 (0.02)
Passed Vit filter:                        30  (0.00202279); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.07u 0.68s 00:00:02.75 Elapsed: 00:00:00.64
# Mc/sec: 5130.93
//
Query:       gi|124001568|ref|NP_062370.2|  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-59  200.0   0.0    5.4e-59  199.4   0.0    1.3  1  PF00069.20  Protein kinase domain
    6.5e-35  120.4   0.0    9.8e-35  119.8   0.0    1.2  1  PF07714.12  Protein tyrosine kinase
    1.1e-20   73.9   0.6    1.1e-20   73.9   0.6    1.8  1  PF00615.14  Regulator of G protein signaling domain
    1.1e-05   24.5   0.0    1.8e-05   23.8   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   0.0   1.4e-62   5.4e-59       2     251 ..     187     439 ..     186     448 .. 0.88

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 1.4e-62
                                    EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEEE-- CS
                     PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvleyv 80 
                                    ++ + lG+G+fG+V+ ++ + tgk++A+K+l+k++ k++k ++ ++ E +il+kl++ ++v+l  ++e+kd l+lvl ++
  gi|124001568|ref|NP_062370.2| 187 RQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALnEKRILEKLHSRFVVSLAYTYETKDALCLVLTIM 266
                                    66799******************************999987765546********************************* PP

                                    TTEBHHHHHH..HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS CS
                     PF00069.20  81 eggdlfdllk..kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttl 158
                                    +ggdl  ++    +  ++e  + ++a ++++gle l +++i++rDLKpeNiLld++g+++i+D+Gla +   ++e+++ +
  gi|124001568|ref|NP_062370.2| 267 NGGDLKYHIYnlGDPGFEEPRAVFYAAELCCGLEDLQRKRIVYRDLKPENILLDDHGHIRISDLGLAME-VPEGEMVRGR 345
                                    **********6667789**************************************************98.99999***** PP

                                    -S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHH CS
                     PF00069.20 159 vgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepkssskseelkdlik 238
                                    vgt  YmAPE+++ +++yt + D+W+lG+++ye++ g+ pf++ +e+ ++e ++++ k+++ee ++   + se++k++++
  gi|124001568|ref|NP_062370.2| 346 VGTVGYMAPEIIN-HEKYTFSPDWWGLGCLIYEMIAGHSPFRKYKEKVNREELERRVKNETEEYSE---RFSEDAKSICS 421
                                    *************.****************************995444444444444444443333...2349******* PP

                                    HHT-SSGGGSTT.....H CS
                     PF00069.20 239 kllekdpakRlt.....a 251
                                     ll kdp+kRl      +
  gi|124001568|ref|NP_062370.2| 422 MLLIKDPSKRLGcqrdgV 439
                                    ***********9444444 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0   2.6e-38   9.8e-35       4     249 ..     189     431 ..     186     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.6e-38
                                    EEEEEEESSEEEEEEEEETTTTSTEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEEEEE CS
                     PF07714.12   4 gkklGeGafGeVvegtlkgekekkevkVavKtl.keeaeeee.keefleeakimkklkhenivkllgvctkeepllivte 81 
                                     + lG+G fGeV+ ++++     +    a K+l k++ ++++ +++ l+e +i++kl+ + +v+l   + +++ l++v+ 
  gi|124001568|ref|NP_062370.2| 189 YRVLGKGGFGEVCACQVR----ATGKMYACKKLeKKRIKKRKgEAMALNEKRILEKLHSRFVVSLAYTYETKDALCLVLT 264
                                    689***************....777778999994334444442566788******************************* PP

                                    --TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEEEE CS
                     PF07714.12  82 yvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyykk 161
                                     ++gGdL+ ++ +  ++ ++  + + +a++++ G+e L++k++v rdL   N+Ll+++++++isD GLa ++    + ++
  gi|124001568|ref|NP_062370.2| 265 IMNGGDLKYHIYNLGDPGFEEPRAVFYAAELCCGLEDLQRKRIVYRDLKPENILLDDHGHIRISDLGLAMEV---PEGEM 341
                                    ************************************************************************...33444 PP

                                    TTTSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GTTTTSHHHHHHHHHHTTEES-BBT...TSBHHHHHHH CS
                     PF07714.12 162 kekaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevleklkegkrlekpe...ncpeelyelm 238
                                     +++   v +mapE+++++k+t   D W  G l++E++  g+sp+ +++++   e+l+++ + e+ e     +e+ +++ 
  gi|124001568|ref|NP_062370.2| 342 VRGRVGTVGYMAPEIINHEKYTFSPDWWGLGCLIYEMIA-GHSPFRKYKEKVNREELERRVKNETEEyseRFSEDAKSIC 420
                                    5667889*******************************9.99**888887777777766666555440004455555565 PP

                                    HHHT-SSGGGS CS
                     PF07714.12 239 kqCweeepekR 249
                                    +  + ++p+kR
  gi|124001568|ref|NP_062370.2| 421 SMLLIKDPSKR 431
                                    55555666655 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.6   2.9e-24   1.1e-20       2     118 .]      52     170 ..      51     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.9e-24
                                    HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHH CS
                     PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreelek 78 
                                    ++sl+++qp gr lFr+F++++ +  +++eF++av e++ +  +ee  +   +I++++++++s+  l +i+ ++++e++ 
  gi|124001568|ref|NP_062370.2|  52 FSSLCDKQPiGRLLFRQFCDTKPDLkRCIEFLDAVAEYEVT-IEEEQREFGLAIFSRFFKEKSEVPLpEIPPDIVKECKW 130
                                    899******************66658***************.9999999******************************* PP

                                    HHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  79 nlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    nl++++ps+++fee+   v+++l++++++++++s +++r+
  gi|124001568|ref|NP_062370.2| 131 NLKQNSPSQNVFEECAGIVCKYLSETPFEEYQESTYFNRF 170
                                    *************************************986 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.9e-09   1.8e-05     161     269 ..     301     403 ..     297     409 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4.9e-09
                                    HHHHTTEE-S--STTSEEE-TT--EEE--G..CC-EETTEEE-.----TTTS-HHHHHC-.XXXX--EEE-HHHHHHHHH CS
                      PF14531.1 161 nLqarglvhgkispdnflldekggvfLggf..taLvragkkvvvsevekalaPpellaekggytsnttkmthkldaWqlG 238
                                     Lq + +v  +++p+n+lld +g + + +      v +g+ v+++   +++  pe++++         k+t++ d W lG
  gi|124001568|ref|NP_062370.2| 301 DLQRKRIVYRDLKPENILLDDHGHIRISDLglAMEVPEGEMVRGRVGTVGYMAPEIINHE--------KYTFSPDWWGLG 372
                                    69***************************9434446789999988889***999999996........89********** PP

                                    HHHHHHHHSS---GGGGGG-SSHHHHTT--- CS
                      PF14531.1 239 lviysiwclrlPftllaeeaseewkfklckk 269
                                      iy +   + Pf + +e++++e + +++k+
  gi|124001568|ref|NP_062370.2| 373 CLIYEMIAGHSPFRKYKEKVNREELERRVKN 403
                                    *********************9955555655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       454  (0.0306116); expected 296.6 (0.02)
Passed bias filter:                      343  (0.0231272); expected 296.6 (0.02)
Passed Vit filter:                        30  (0.00202279); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.16u 0.69s 00:00:01.85 Elapsed: 00:00:00.56
# Mc/sec: 2628.65
//
Query:       gi|226958673|ref|NP_835177.2|  [L=1175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-39  134.0   3.1    4.8e-39  134.0   3.1    3.3  3  PF00621.15  RhoGEF domain
    6.4e-17   61.8   0.0      4e-16   59.2   0.0    2.3  1  PF13716.1   Divergent CRAL/TRIO domain
      8e-09   35.7   0.2      8e-09   35.7   0.2    5.1  3  PF00435.16  Spectrin repeat
    7.9e-07   29.2   0.8    1.9e-06   28.0   0.2    2.0  1  PF00169.24  PH domain
    2.9e-05   23.3   0.6    7.1e-05   22.1   0.1    1.9  1  PF00018.23  SH3 domain
    9.7e-05   21.8   0.1    0.00078   18.9   0.1    2.4  2  PF14604.1   Variant SH3 domain
  ------ inclusion threshold ------
      0.033   13.7   3.2      0.062   12.8   0.0    2.8  2  PF00015.16  Methyl-accepting chemotaxis protein (MCP) signall
      0.034   13.6   0.0      0.078   12.4   0.0    1.6  1  PF07653.12  Variant SH3 domain
        1.9    8.6   5.5        3.2    7.8   1.5    2.8  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4      0.11   1.8e+02      89     131 ..     284     325 ..     211     345 .. 0.75
   2 ?    0.5   0.7      0.28   4.7e+02      41     119 ..     398     521 ..     356     538 .. 0.58
   3 !  134.0   3.1   2.9e-42   4.8e-39       1     180 []     606     781 ..     606     781 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
                                    HHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHH CS
                     PF00621.15  89 eYisnfdkalkllkelskknskfkkflkeaeespesskldLes 131
                                    + + n+ +++ ll++l +++++f +f ++ ++ +  + l+L++
  gi|226958673|ref|NP_835177.2| 284 DQLDNQATVQRLLAQLNETEAAFDEFWAKHQQ-KLEQCLQLRH 325
                                    44567888888888888888888888887777.3445555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.28
                                    HHSCCHHHHHHHHHHHHHHHHH......................................HHHTT....SS----HHHH. CS
                     PF00621.15  41 siFsnieeilklhkeflekLee......................................rlkek....kdaqkigdvf. 77 
                                    si +++ee+ +l ++f ++                                         +   +       q+i + + 
  gi|226958673|ref|NP_835177.2| 398 SIHPKCEELQHLCDHFASEVTRrrgllskslelhslletsmkwsdegifllasqpvdkcqS---QdgaeAALQEIEKFLe 474
                                    5666666666666666666665555555555555555555555555555555555543321...1234433444444444 PP

                                    ....HHHHSHHHHHHHH.HHTHHHHHHHHHHHHHH-HHHHHHHHHHH CS
                     PF00621.15  78 ....lkleeflkvYseY.isnfdkalkllkelskknskfkkflkeae 119
                                         k +e+ ++Y+eY +   ++ l+++++  +k+++ ++++ + +
  gi|226958673|ref|NP_835177.2| 475 tgaeNKIQELNEIYKEYeCILNQDLLEHVQKVFQKQESTEEMFHRRQ 521
                                    44544466688888888767777777777775555555666666333 PP

  == domain 3  score: 134.0 bits;  conditional E-value: 2.9e-42
                                    HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.......TSSHHHHHHHHSCCHHHHHHHHHH.HHHHHHHHHHTTSS---- CS
                     PF00621.15   1 vieElietErsYvrdLevlvevyieplkes......ksilseeeiksiFsnieeilklhke.flekLeerlkekkdaqki 73 
                                    v++El++tEr+Yv++L  + e y  ++ ++      ++ l+ ++++++F+n+eei+++h++ fl +Le    + +  + +
  gi|226958673|ref|NP_835177.2| 606 VMNELLDTERAYVEELLCVLEGYAAEMDNPlmahliSTGLQ-NKKNILFGNMEEIYHFHNRiFLRELES---CIDCPELV 681
                                    79******************************777555444.7899*************6659******...88999*** PP

                                    HHHHHHHHSHHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHHHHHHCT CS
                     PF00621.15  74 gdvflkleeflkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLLkellka 153
                                    g +fl++ e +++Y++Y++n++++++l +++s ++  f+++ k     +  +kl+L+s+L+kPvqR+++Y+lLLke+lk+
  gi|226958673|ref|NP_835177.2| 682 GRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPF-FQECQK-----KLDHKLSLDSYLLKPVQRITKYQLLLKEMLKY 755
                                    ******555588****************99988866.555555.....45569*************************** PP

                                    S-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                     PF00621.15 154 tpeshpdyealekaleaikevasqiNe 180
                                    +++ +   e+l++al++i  +++ +N+
  gi|226958673|ref|NP_835177.2| 756 SKHCE-GAEDLQEALSSILGILKAVND 781
                                    *8666.89***************9996 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   2.4e-19     4e-16       4     148 ..      52     194 ..      49     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 2.4e-19
                      PF13716.1   4 lltggkdregrpvvvfiakyl...pstddydkllkyllhtledeivgkp..yvlVyfhtglssenkpslswlkklyktlp 78 
                                    +l+gg+ ++g+pv++f+       ++ +++++++ yl ++++ +  ++   ++lV++ ++    +k  +  +k     + 
  gi|226958673|ref|NP_835177.2|  52 YLSGGRGQDGSPVITFPDYPAfseIPDKEFQNVMTYLTSIPSLQ--DAGigFILVIDRRQ----DK--WTSVKASVLRIA 123
                                    789**************55554687777*************999..55578*********....78..999999999999 PP

                      PF13716.1  79 rrykknlkkvylvhpstflksilstllslfvskkflkkk..viyisslseLseyiditqlkkslpgvysyde 148
                                     +++ nl+ v++++p+ f++ +ls +   f +  f k k  v ++ss+ eL+ yid++ql+++l+g+++y++
  gi|226958673|ref|NP_835177.2| 124 ASFPANLQLVLVLRPTGFFQRTLSDIAFKFNRDEF-KMKvpVMMLSSVPELHGYIDKSQLTEDLGGTLDYCH 194
                                    ****************6666666665555555555.44445999**************************98 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   8.6      0.21   3.5e+02       4     105 .]     205     319 ..     202     319 .. 0.79
   2 !   35.7   0.2   4.9e-12     8e-09       4     103 ..     324     424 ..     321     426 .. 0.85
   3 ?    2.0   2.8      0.15   2.4e+02       8      65 ..     479     532 ..     477     548 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.21
                                    HHHHHHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH............HHHHHHHHT CS
                     PF00435.16   4 qqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaa.qqervealn............elaeklide 70 
                                    + fa  +++  ++++   ++l++++l++d++++   l +h++ +a +++  q  +++ n              a ++ + 
  gi|226958673|ref|NP_835177.2| 205 ESFALMVKQTAQMLQAFGTELAETELPNDVQSTSLVLSAHTEKKAKVKEdLQLALKEGNsileslreplaeSAAHSVNQD 284
                                    678888999999999999********************999999988887888887777666755555553333333444 PP

                                    THTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     PF00435.16  71 ghsaseeieerleelnerWeeLlelaaerkqkLee 105
                                    + + +  ++  l++lne  ++  e +a+++qkLe+
  gi|226958673|ref|NP_835177.2| 285 QLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQ 319
                                    55566999999999999999999999999999986 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 4.9e-12
                                    HHHHHHHHHHHHHHHHH.HHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH CS
                     PF00435.16   4 qqfaqdadeleeWieek.eellssedlgkdleevqallkkhkaleaelaaqqervealnelaeklideghsaseeieerl 82 
                                    + f+q  +e++  ++ + +++++ +d+g++l++vq llk+++a+e+  + + ++ +al   +++li+++h+a ++i+ ++
  gi|226958673|ref|NP_835177.2| 324 RHFEQGFREVKTTLDSMsQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARALSLEGQQLIENRHYAVDSIHPKC 403
                                    55555555555555555333335599****************************************************** PP

                                    HHHHHHHHHHHHHHHHHHHHH CS
                     PF00435.16  83 eelnerWeeLlelaaerkqkL 103
                                    eel++  ++  + + +r+  L
  gi|226958673|ref|NP_835177.2| 404 EELQHLCDHFASEVTRRRGLL 424
                                    ***********9999999877 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.15
                                    HHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     PF00435.16   8 qdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervealnelae 65 
                                    ++++el+e  +e e +l ++dl   le+vq+  +k +  e+ +  +q  +++l + ++
  gi|226958673|ref|NP_835177.2| 479 NKIQELNEIYKEYECIL-NQDL---LEHVQKVFQKQESTEEMFHRRQASLKKLAAKQT 532
                                    56788888888888888.6666...8**************************998776 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   1.1e-09   1.9e-06       3     103 ..     814     915 ..     812     916 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
                                    EEEEEEEEETTSSSEEEEEEEEETTEEEEESSTTT.......TCESSESEEEESTTEEEEEECTTTCSTTSSSSEEEEEE CS
                     PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskk.......ksykapkgsiplndctvkkasstkfgaqkesnnyfeit 75 
                                    k+G    k+  + ++ +r+++L+++ +l++k++++         ++++k+s +++ + +++  +        ++  fei+
  gi|226958673|ref|NP_835177.2| 814 KKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREEngegyekAPSYSYKQSLNMTAVGITENVKG-------DTKKFEIW 886
                                    77888888899999**************************9999999999999999999999997.......799***** PP

                                    ETTS.EEEEEEESSHHHHHHHHHHHHHHH CS
                     PF00169.24  76 fknv.esyllsaeseeerkrWvqalknll 103
                                     + + e y+++a+++e + +Wv+ ++++l
  gi|226958673|ref|NP_835177.2| 887 YNAReEVYIIQAPTPEIKAAWVNEIRKVL 915
                                    999999*******************9986 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.3e-08   7.1e-05       9      48 .]    1095    1134 ..    1091    1134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.3e-08
                                     SSTTB-EB-TTEEEEEEEESSSSEEEEEETTSTEEEEEEG CS
                     PF00018.23    9 resdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48  
                                       +d L ++ GD+++v+e+  +g w +r+ ++ keG++P+
  gi|226958673|ref|NP_835177.2| 1095 GGPDTLAMRSGDMVEVVEEGAEGLWYVRDLTSSKEGWVPA 1134
                                     5699******************9999****99*******7 PP

>> PF14604.1  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.77   1.3e+03      20      35 ..     101     116 ..     101     129 .. 0.83
   2 !   18.9   0.1   4.7e-07   0.00078       9      46 ..    1096    1135 ..    1092    1137 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.77
                      PF14604.1  20 vitvleetedgWllGe 35 
                                    +i+v+ + +d W  ++
  gi|226958673|ref|NP_835177.2| 101 FILVIDRRQDKWTSVK 116
                                    6999*999****9987 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.7e-07
                      PF14604.1    9 dddELslskGdvitvleetedgWllGe.l.tGrtGlvPan 46  
                                     ++d L ++ Gd++ v+ee  +g ++++ l +++ G+vPa+
  gi|226958673|ref|NP_835177.2| 1096 GPDTLAMRSGDMVEVVEEGAEGLWYVRdLtSSKEGWVPAS 1135
                                     5899************9989999999865699******98 PP

>> PF00015.16  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.062     105     210 ..     309     413 ..     292     416 .. 0.86
   2 ?   -0.2   0.2      0.35   5.8e+02      88     144 ..     477     531 ..     467     538 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
                                    HHHH..............HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     PF00015.16 105 ivkeindsveslqevrteveegselveetgealkeIveavaeiadlvqeiaaaseeqsasieevnqaveeidevtkenaa 184
                                      ++ ++ +e   + r + e+g  +v++t +++++  +a +++ +++  ++   ++++a  e+ + av++   ++ e + 
  gi|226958673|ref|NP_835177.2| 309 FWAKHQQKLEQCLQLR-HFEQGFREVKTTLDSMSQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARALSLEGQQ 387
                                    5555455555555544.5799*************9999****************************************** PP

                                    HHHHHHHHHHHHHHHHHHHHHHCHHH CS
                     PF00015.16 185 lveeaaaaaetleeqaeeleelvaqF 210
                                    l+e+   a+ +++ + eel++l ++F
  gi|226958673|ref|NP_835177.2| 388 LIENRHYAVDSIHPKCEELQHLCDHF 413
                                    **********************9999 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.35
                                    HHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHCCHHHHHHHHH CS
                     PF00015.16  88 AersaqaakeieklieeivkeindsveslqevrteveegselveetgealkeIveav 144
                                    Ae+  q  +ei k  e i ++  d +e +q+v ++ e++ e+ ++ + +lk+++++ 
  gi|226958673|ref|NP_835177.2| 477 AENKIQELNEIYKEYECILNQ--DLLEHVQKVFQKQESTEEMFHRRQASLKKLAAKQ 531
                                    555556667777777777777..8999999************999999999998765 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-05     0.078      12      53 ..    1096    1138 ..    1085    1140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.8e-05
                                     CTTB--B-TTEEEEEE.ECCGCTCEEEEE..CCCEEEEEGCHCC CS
                     PF07653.12   12 dpseLsfkkGdvikvlgskesdgwwlgev..gGrvGlfPsslve 53  
                                      p  L  + Gd ++v+ +++++g w+++     + G++P s+++
  gi|226958673|ref|NP_835177.2| 1096 GPDTLAMRSGDMVEVV-EEGAEGLWYVRDltSSKEGWVPASSLS 1138
                                     56669999********.9999999***99988999****99885 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.5    0.0019       3.2      32     102 ..     467     529 ..     456     534 .. 0.90
   2 ?    0.9   0.1      0.28   4.6e+02      51      94 ..     692     740 ..     686     757 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
                                    HHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS..TTTTTTHHHHHHHHHHHH CS
                     PF00615.14  32 laveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlekaqpsrklfeeaqeevfelle 102
                                    +++e+f ++   e+ +++ +eIy++y        + ++++l e+++k  +k++ ++++f++ q+++++l +
  gi|226958673|ref|NP_835177.2| 467 QEIEKFLET-GAENKIQELNEIYKEYE-------CILNQDLLEHVQKVFQKQESTEEMFHRRQASLKKLAA 529
                                    689999999.9999999*******997.......9999*************************99888755 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
                                    HHHHHHHTSTTSTTSS....TS-HHHHHHHHHHHCS...TTTTTTHHHH CS
                     PF00615.14  51 keIynkylapsspkel....nidkklreeleknleka.qpsrklfeeaq 94 
                                    ++Iy+ky++++  +e       d+  ++e++k+l ++ + ++ l++ +q
  gi|226958673|ref|NP_835177.2| 692 FQIYEKYCQNKPRSESlwrqCSDCPFFQECQKKLDHKlSLDSYLLKPVQ 740
                                    6899999987776553233345667777777777776544455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       937  (0.0631785); expected 296.6 (0.02)
Passed bias filter:                      471  (0.0317578); expected 296.6 (0.02)
Passed Vit filter:                        47  (0.00316904); expected 14.8 (0.001)
Passed Fwd filter:                         9  (0.000606837); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.31u 0.91s 00:00:03.22 Elapsed: 00:00:00.76
# Mc/sec: 4035.71
//
Query:       gi|254553473|ref|NP_775578.2|  [L=1381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-44  147.0   0.1    1.3e-23   82.5   0.0    2.5  2  PF02196.10  Raf-like Ras-binding domain
    7.2e-28   97.0   3.6    1.2e-27   96.3   3.6    1.4  1  PF00615.14  Regulator of G protein signaling domain
    1.7e-13   50.5   0.0    4.8e-13   49.0   0.0    1.8  1  PF00595.19  PDZ domain (Also known as DHR or GLGF)
    1.9e-09   36.5   0.2    1.9e-09   36.5   0.2    2.0  1  PF02188.12  GoLoco motif
    0.00012   22.0   0.0    0.00028   20.8   0.0    1.5  1  PF00640.18  Phosphotyrosine interaction domain (PTB/PID)
     0.0023   17.7   0.0     0.0081   16.0   0.0    1.9  1  PF13180.1   PDZ domain
  ------ inclusion threshold ------
      0.017   15.0   0.0       0.25   11.2   0.0    2.4  2  PF11470.3   GLUT4 regulating protein TUG


Domain annotation for each model (and alignments):
>> PF02196.10  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0     6e-27   1.3e-23       1      71 []     962    1032 ..     962    1032 .. 0.98
   2 !   62.1   0.0   1.4e-20   2.9e-17       2      71 .]    1035    1104 ..    1034    1104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 6e-27
                                     -EEEEEETTTEEEEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEEEEEEE-TTSBGGGGTTSEEEEEE- CS
                     PF02196.10    1 ktirvhLPnnqrsvvevrpGmtvrDaLskalkrrgLnpsacaVrlvgekkpldletdissLpgeelivell 71  
                                     k+++vhLP+++++vv+v++G++++++Ls++++r+g+n +a++++lvg++kpl+l++d+s+L+ ++l++e++
  gi|254553473|ref|NP_775578.2|  962 KHCCVHLPDGTSCVVAVKSGFSIKEILSGLCERHGINGAAVDLFLVGGDKPLVLHQDSSILATRDLRLEKR 1032
                                     79*******************************************************************86 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 1.4e-20
                                     EEEEEETTTEEEEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEEEEEEE-TTSBGGGGTTSEEEEEE- CS
                     PF02196.10    2 tirvhLPnnqrsvvevrpGmtvrDaLskalkrrgLnpsacaVrlvgekkpldletdissLpgeelivell 71  
                                     ++++++P+n++++++++p+++v+++L+++++++gL++  + Vrl+gek+pldl+++issL+g+++i+e++
  gi|254553473|ref|NP_775578.2| 1035 FRLDLVPINRSVGLKAKPTKPVTEVLRPVVAKYGLDLGSLLVRLSGEKEPLDLGAPISSLDGQRVILEER 1104
                                     56789***************************************************************86 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   3.6   5.7e-31   1.2e-27       1     118 []     715     831 ..     715     831 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 5.7e-31
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylapsspkelnidkklreelek 78 
                                    s+e+ll+d+ g+++F +Fl++efseen+ Fw+a+e f +   ++++els +a+eI++k+l ++++  +nid+++   l++
  gi|254553473|ref|NP_775578.2| 715 SFERLLQDPVGVRYFSDFLRKEFSEENILFWQACECFSHVpaHDKKELSYRAREIFSKFLCSKATTPVNIDSQAQ--LAD 792
                                    799************************************98899999*************************986..566 PP

                                    HHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  79 nlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                     + +  p++++f+e q ++f+l++ dsy++Flks+ly+++
  gi|254553473|ref|NP_775578.2| 793 DILN-APHPDMFKEQQLQIFNLMKFDSYTRFLKSQLYQEC 831
                                    5555.5*******************************985 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.3e-16   4.8e-13       3      80 ..      23      94 ..      21      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.3e-16
                                   EEEESTTSBTSEEEEEETTSSSSSEEEEEESTTSHHHHHTCSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
                     PF00595.19  3 slekekrgglGfslkggsdkrdkgifvsevvpggaaeadglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80
                                   ++ + +r g Gf+l+g+      +++ s v++g++a+  gl++GD+Il++N  +v + sh+++v++i +++g+++++i
  gi|254553473|ref|NP_775578.2| 23 EVAR-GRAGYGFTLSGQ-----APCVLSCVMRGSPADFVGLRAGDQILAINEINVKKASHEDVVKLIGKCSGVLHMVI 94
                                   5556.999*******83.....479********7777666************************************99 PP

>> PF02188.12  GoLoco motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   8.9e-13   1.9e-09       2      23 .]    1188    1209 ..    1187    1209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 8.9e-13
                     PF02188.12    2 edFfdLlaraQssRlDDQRcsl 23  
                                     e+Ff+L+++aQs+R DDQR++l
  gi|254553473|ref|NP_775578.2| 1188 EEFFELISKAQSNRADDQRGLL 1209
                                     9*******************97 PP

>> PF00640.18  Phosphotyrosine interaction domain (PTB/PID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00028       3     117 ..     231     343 ..     230     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                                    EEEEEEEEESSS.STSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCECEEEEEEEETTEEEEEETTTTSEEEEECGGG CS
                     PF00640.18   3 vkylGsvevlee.rapdkstrmqvaqeaisrvkeaklkkikkkegerqkgteidLeistdglklldektkevladhplrk 81 
                                    v ylGs+e+++  +++++    q+++ +++r++++           ++    +++++  d ++l+++    v+a+ p +k
  gi|254553473|ref|NP_775578.2| 231 VGYLGSIELPSTsSNLEHD-SLQAIRGCMRRLRAE-----------QKIHSLVTMKVMHDCVQLVTDR-AGVVAEYPAEK 297
                                    78**********6666666.788888899998888...........56667899*********99766.5689******* PP

                                    EEEEEETCSTCSSEEEE...........EEESSCSSSEEEEEEEESS CS
                     PF00640.18  82 Isfiadgdvdderrfay...........iaadkktnkfaChvFesek 117
                                    + f a+ ++dd r f++           +++d+   +  ChvF+ ++
  gi|254553473|ref|NP_775578.2| 298 LAFSAV-CPDDRRFFGLvtmqtnddgglAQEDEGALRTSCHVFMVDP 343
                                    ******.*********************999999*********9876 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.8e-06    0.0081      19      57 ..      43      84 ..      29      87 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.8e-06
                      PF13180.1 19 vs.VkessPaakaglkpGDiilkvdgkkv..ksltdlkslll 57
                                    s V  +sPa+  gl++GD+il+++++ v   s +d+++l+ 
  gi|254553473|ref|NP_775578.2| 43 LScVMRGSPADFVGLRAGDQILAINEINVkkASHEDVVKLIG 84
                                   344999***********************5545577777765 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.25   5.3e+02      10      46 ..     975    1013 ..     968    1018 .. 0.74
   2 ?   11.2   0.0   0.00012      0.25       6      52 ..    1043    1091 ..    1039    1094 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.25
                      PF11470.3   10 kvkvtpsttltqvleeackkfkldsn..eytLkhnrkpl 46  
                                      v v  + +++++l+  c+++++++   +  L  ++kpl
  gi|254553473|ref|NP_775578.2|  975 VVAVKSGFSIKEILSGLCERHGINGAavDLFLVGGDKPL 1013
                                     5778888899**************994444445555665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
                      PF11470.3    6 frrvkvkvtpsttltqvleeackkfkldsn..eytLkhnrkpldlslpf 52  
                                     +r+v +k  p++++t+vl  ++ k++ld      +L+  ++pldl  p+
  gi|254553473|ref|NP_775578.2| 1043 NRSVGLKAKPTKPVTEVLRPVVAKYGLDLGslLVRLSGEKEPLDLGAPI 1091
                                     689999**********************998999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1381 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       381  (0.0256894); expected 296.6 (0.02)
Passed bias filter:                      244  (0.016452); expected 296.6 (0.02)
Passed Vit filter:                        30  (0.00202279); expected 14.8 (0.001)
Passed Fwd filter:                         7  (0.000471984); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.99u 0.55s 00:00:02.54 Elapsed: 00:00:00.55
# Mc/sec: 6554.31
//
Query:       gi|40254370|ref|NP_056547.3|  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-30  104.1   0.0    4.7e-30  103.1   0.0    1.6  1  PF00778.12  DIX domain
    2.9e-27   95.1   0.6    6.6e-27   93.9   0.6    1.6  1  PF00615.14  Regulator of G protein signaling domain
      7e-18   64.0   1.9      7e-18   64.0   1.9    2.5  1  PF08833.5   Axin beta-catenin binding domain


Domain annotation for each model (and alignments):
>> PF00778.12  DIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   9.6e-34   4.7e-30       2      82 ..     759     838 ..     758     840 .] 0.97

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 9.6e-34
                    PF00778.12   2 eetkvvYylddeetpylvkipkreeevTLgdfKaalsrkgnykyffkaldpdfgr.vVkeevteDdakLplfegkvvawle 81 
                                   +e+ v+Y++++ee+py+  +++++  +TLg+fK++ls+kgny+y+fk+++++f + +V+ee+++D+++Lp++eg++++++e
  gi|40254370|ref|NP_056547.3| 759 SELVVTYFFCGEEIPYRRMLKAQS--LTLGHFKEQLSKKGNYRYYFKKASDEFACgAVFEEIWDDETVLPMYEGRILGKVE 837
                                   6889********************..******************************************************9 PP

                    PF00778.12  82 s 82 
                                   +
  gi|40254370|ref|NP_056547.3| 838 R 838
                                   7 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.6   1.3e-30   6.6e-27       1     118 []      81     199 ..      81     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.3e-30
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka.keqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                   sl+sll dq+g  lFr+Fle+e++ + l+Fw+a++ f+++  ++ ++ + ak+Iy++y++++s  + +++ ++++ +++ +
  gi|40254370|ref|NP_056547.3|  81 SLHSLLGDQDGAYLFRTFLEREKCVDTLDFWFACNGFRQMnLKDTKTLRVAKAIYKRYIENNSVVSKQLKPATKTYIRDGI 161
                                   799*************************************5566777777******************************* PP

                                   CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +k+q  + +f++aq+e++  +e+++y+ Fl+s++yl++
  gi|40254370|ref|NP_056547.3| 162 KKQQIGSVMFDQAQTEIQAVMEENAYQVFLTSDIYLEY 199
                                   ***********************************986 PP

>> PF08833.5  Axin beta-catenin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   1.9   1.4e-21     7e-18       1      45 []     432     469 ..     432     469 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-21
                     PF08833.5   1 eDdpqsILDdHvsRVlktPgtqSPgpnisslrrgrhspgsrspds 45 
                                   e+dpq ILDdH+sRVlktPg+qSPg+       gr+sp+srspd+
  gi|40254370|ref|NP_056547.3| 432 EEDPQTILDDHLSRVLKTPGCQSPGV-------GRYSPRSRSPDH 469
                                   8*************************.......99*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       697  (0.0469962); expected 296.6 (0.02)
Passed bias filter:                      462  (0.031151); expected 296.6 (0.02)
Passed Vit filter:                        35  (0.00235992); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.87u 0.88s 00:00:02.75 Elapsed: 00:00:00.78
# Mc/sec: 2811.13
//
Query:       gi|29336055|ref|NP_033089.2|  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-35  121.7   4.8      2e-35  121.4   4.8    1.1  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   4.8   1.3e-39     2e-35       1     118 []      64     179 ..      64     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 1.3e-39
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   sl++ll++++g+  F++Fl+sefseenleFw a+e++kk k+  ++ +kak+Iy++++++++pke+nid+ +++ + knl 
  gi|29336055|ref|NP_033089.2|  64 SLDKLLQNSYGFASFKSFLKSEFSEENLEFWVACENYKKIKSPIKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKNLV 144
                                   799****************************************************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +  ps++ f+ aq++++ l+ekds p+F++se+y++l
  gi|29336055|ref|NP_033089.2| 145 E--PSPRSFDLAQKRIYALMEKDSLPRFVRSEFYKEL 179
                                   9..*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       565  (0.0380959); expected 296.6 (0.02)
Passed bias filter:                      316  (0.0213067); expected 296.6 (0.02)
Passed Vit filter:                        31  (0.00209022); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.66s 00:00:01.27 Elapsed: 00:00:00.68
# Mc/sec: 694.81
//
Query:       gi|124486718|ref|NP_001074538.1|  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-32  111.0   0.0    5.9e-32  110.2   0.0    1.4  1  PF00615.14  Regulator of G protein signaling domain
    2.3e-12   46.4   0.0    5.3e-12   45.3   0.0    1.6  1  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
    2.8e-11   42.9   0.1    1.9e-10   40.3   0.0    2.2  2  PF00631.17  GGL domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   1.2e-35   5.9e-32       1     116 [.     303     415 ..     303     417 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.2e-35
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreele 77 
                                       s+++ll+d+ gr  F +Fl++efs enl+Fw+a+ee++    q ++ + + ++y+++lap++++ +nid++++e++ 
  gi|124486718|ref|NP_001074538.1| 303 SFRELLDDPVGRAHFMDFLQKEFSAENLSFWEACEELRFG-GQAQVPTLVDSVYQQFLAPGAARWINIDSRTMERTL 378
                                       799*************************************.************************************ PP

                                       HHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHH CS
                        PF00615.14  78 knlekaqpsrklfeeaqeevfellekdsypkFlkselyl 116
                                       + l++  p+r ++++aq +++ l++kdsyp+Flks++y+
  gi|124486718|ref|NP_001074538.1| 379 EGLRQ--PHRYVLDAAQLHIYMLMKKDSYPRFLKSDIYK 415
                                       ****9..*******************************8 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.1e-15   5.3e-12       1      74 []      37     107 ..      37     107 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.1e-15
                                       SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH.--SSSSS-EEX CS
                        PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsg.FrdskqafYqf 74 
                                       gvkm+++r   +++++++ G+++v+WL++   ++++  +eA++lg lL ++g+i+++ ++++  +r++ ++ Y+f
  gi|124486718|ref|NP_001074538.1|  37 GVKMRSQRLLITVIPHAVAGRDLVEWLVQ---KFCILEDEALHLGTLLAQHGYIYPLRESRDLtLRPD-ETPYRF 107
                                       89**************************5...569*************************97755555.999998 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   3.9e-14   1.9e-10       3      68 .]     222     284 ..     220     284 .. 0.94
   2 ?   -0.4   0.0      0.19   9.6e+02      12      32 ..     319     339 ..     314     340 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3.9e-14
                        PF00631.17   3 lklklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccwil 68 
                                        ++ +k+eie  +k+L r+r+k S + e ++++ +    +Dp+++++  p+    Npwi++++  w +
  gi|124486718|ref|NP_001074538.1| 222 SSDFYKCEIECFRKALGRNRVKSSACLEAYLKFSSqhGPHDPIMSGC-LPS----NPWITDDVTYWAM 284
                                       577899*****************************************.999....******9999976 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.19
                        PF00631.17  12 eqLkkeLererikvSkaceel 32 
                                       ++L+ke + e +   +aceel
  gi|124486718|ref|NP_001074538.1| 319 DFLQKEFSAENLSFWEACEEL 339
                                       79*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       346  (0.0233295); expected 296.6 (0.02)
Passed bias filter:                      307  (0.0206999); expected 296.6 (0.02)
Passed Vit filter:                        20  (0.00134853); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.95u 0.74s 00:00:01.69 Elapsed: 00:00:00.67
# Mc/sec: 1815.54
//
Query:       gi|224994275|ref|NP_001014973.2|  [L=958]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-60  201.4   0.5    1.3e-58  197.5   0.2    2.4  2  PF02194.10  PXA domain
    8.5e-31  106.3   0.3    5.7e-30  103.6   0.0    2.6  1  PF08628.7   Sorting nexin C terminal
    1.2e-22   79.8   0.4    1.2e-22   79.8   0.4    2.2  1  PF00787.19  PX domain
    1.4e-19   70.2   1.2    4.6e-18   65.4   0.0    3.3  3  PF00615.14  Regulator of G protein signaling domain
  ------ inclusion threshold ------
      0.075   12.9   2.1       0.46   10.4   0.1    3.2  2  PF02284.11  Cytochrome c oxidase subunit Va


Domain annotation for each model (and alignments):
>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5   0.2   4.5e-62   1.3e-58       3     184 ..     100     283 ..      98     284 .. 0.98
   2 ?    1.3   0.0     0.069     2e+02     159     182 ..     800     822 ..     791     824 .. 0.89

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 4.5e-62
                        PF02194.10   3 evdealeeiidliirdFVdsWYskispdeefpeeirqsiesailelsqrlrsvdlasllttrlldllakhlesfrka 79 
                                        +de+l+++i++ +rd+V++WY+++s+de+f+ eirq++++a+ ++++r +++d+++++ttr++d++++hl++frka
  gi|224994275|ref|NP_001014973.2| 100 IIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKA 176
                                       69*************************************************************************** PP

                        PF02194.10  80 qqevkerekkslqseeeevelalalksete...klhpaalskeaeekkylrklvegllsvlLpeedleckllrtllr 153
                                       qq+v e++++ + ++e+ ve++++++ e+e   +++  ++s+++ee  +lr+l+e ll++lLp+ d+++k++r+++r
  gi|224994275|ref|NP_001014973.2| 177 QQRVTEKDDQVKGTAEDLVETFFEVEVEMEkdvCRDLVCTSPKDEEG-FLRDLCEVLLYLLLPPGDFQSKIMRYFVR 252
                                       **************************************999999999.***************************** PP

                        PF02194.10 154 EilacsvLkplvsklsdPdfiNelIikliek 184
                                       Eila  +L+pl+++lsdPd+iN+ +i++i++
  gi|224994275|ref|NP_001014973.2| 253 EILARGILLPLINQLSDPDYINQYVIWMIRD 283
                                       ****************************987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.069
                        PF02194.10 159 svLkplvsklsdPdfiNelIikli 182
                                       ++L++l++  + +d+iN+ I++++
  gi|224994275|ref|NP_001014973.2| 800 NLLQQLIR-ATYGDTINRKIVDHV 822
                                       78999999.9***********987 PP

>> PF08628.7  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   1.9e-33   5.7e-30       1     112 [.     793     903 ..     793     904 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.9e-33
                         PF08628.7   1 WlrgrallvvlkqllkqllgstiekklkekvqrltseeklasllkklkeilwpdgklatpppersdeerletkkeAk 77 
                                       Wlr r++ ++l+ql++ ++g+ti++k++++v+++ts+e++a+ +k++++++wp+g la++ p r+++ r++t+ + k
  gi|224994275|ref|NP_001014973.2| 793 WLR-RNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAETVPCRDKAIRMRTRIAGK 868
                                       **9.************************************************************************* PP

                         PF08628.7  78 keLlellpdalvkvvGreaarealervfemLQnev 112
                                       ++L  ++pd l++++G+e++r+++ rvfem+Q+++
  gi|224994275|ref|NP_001014973.2| 869 TKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQ 903
                                       ********************************987 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.4     4e-26   1.2e-22       9     112 ..     572     676 ..     562     677 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 4e-26
                                       EEEEEECSSSCEEEEEEEEETTS..SSEEEEEEEHHHHHHHHHHHHHHHT.TSTSTSSSTTTSSSSCGTTSHHHHHH CS
                        PF00787.19   9 leretkgskkhsyylievelktg..akewtvkRrYsdFeeLhsqLlrkfp.rlklPplPkkvlfgsvrkkdeefiek 82 
                                       ++   +++k +++y+i+v++++   +++w+++RrYsdF+++h++++++f+  +++ +lP+k++f +   +d++f+ek
  gi|224994275|ref|NP_001014973.2| 572 CN---DHGKTYALYAITVHRRNLntEEMWKTYRRYSDFHDFHMRITEQFEnLSSILKLPGKKTFNN---MDRDFLEK 642
                                       44...3589999999999999889**************************8899**********87...******** PP

                                       HHHHHHHHHHHHHTSCHHHH.....SHHHHHHHHC CS
                        PF00787.19  83 rrkgLeeyLqrllshpelrk.....sevltsFLev 112
                                       r+k+L++yLq ll  pe++k      +++++FLe+
  gi|224994275|ref|NP_001014973.2| 643 RKKDLNAYLQ-LLLTPEMMKaspalAHCVYDFLEN 676
                                       **********.7777888877888999******96 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.29   8.6e+02      40      64 ..     176     205 ..     129     219 .. 0.69
   2 !   65.4   0.0   1.5e-21   4.6e-18       2     118 .]     375     513 ..     374     513 .. 0.94
   3 ?    0.9   0.1      0.16   4.6e+02      65     108 ..     632     681 ..     595     742 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.29
                                       S.....SHHHHHHHHHHHHHHHHTSTTSTT CS
                        PF00615.14  40 a.....keqeelskkakeIynkylapsspk 64 
                                       a     +++++++ +a+++++++++ + + 
  gi|224994275|ref|NP_001014973.2| 176 AqqrvtEKDDQVKGTAEDLVETFFEVEVEM 205
                                       255566788899999999999999655444 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 1.5e-21
                                       HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS....................SHHHHHHHHHHHHHHHHT CS
                        PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkka....................keqeelskkakeIynkyl 58 
                                       l+s+l d+  +++F ++++++  + +l Fw+ ve ++ +                    +++  l ++a  Iy++yl
  gi|224994275|ref|NP_001014973.2| 375 LDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTaqqqlevlsgrqrdgkqqtnQTKGLLRAAAVGIYEQYL 451
                                       799**************************************************9999866667777779******** PP

                                       STTSTTSSTS-HHHHHHHHHHHCS..TTTTTTHHHHHHHHHHHHHTH..HHHHHTSHHHHHH CS
                        PF00615.14  59 apsspkelnidkklreeleknlekaqpsrklfeeaqeevfellekds..ypkFlkselylrl 118
                                       +++++  + +d+ l+++l++ l++++p++++f+++q++v+el+ +d   yp F ++ ly r+
  gi|224994275|ref|NP_001014973.2| 452 SEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVYELMLRDErfYPSFRQNALYVRM 513
                                       *******************************************877444********99875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
                                       SSTS-HHHHHHHHHHHCS........TTTTTTHHHHHHHHHHHHHTHHHH CS
                        PF00615.14  65 elnidkklreeleknleka......qpsrklfeeaqeevfellekdsypk 108
                                       + n+d++  e+ +k l+         +++k+  ++ + v+++le+++y+k
  gi|224994275|ref|NP_001014973.2| 632 FNNMDRDFLEKRKKDLNAYlqllltPEMMKASPALAHCVYDFLENKAYSK 681
                                       33555555555555555555555554555555555555666666666554 PP

>> PF02284.11  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00016      0.46      22     104 ..     127     209 ..     111     213 .. 0.78
   2 ?   -0.6   0.0       0.4   1.2e+03      61      88 ..     297     323 ..     287     346 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                        PF02284.11  22 eaidafevrkglndllgydlvPePkiieaalraarrvndlasairvleavkdkvgdekelykylleelkptlqelGi 98 
                                       ++  + e+r++l + l      + +i  +   ++r v+d+ + +rv+   +++v +++++ k   e+l +t  e+ +
  gi|224994275|ref|NP_001014973.2| 127 DESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEV 203
                                       555567888888877755555555555567788999***********************************999999 PP

                        PF02284.11  99 ptkeel 104
                                        +++++
  gi|224994275|ref|NP_001014973.2| 204 EMEKDV 209
                                       887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.4
                        PF02284.11  61 lasairvleavkdkvgdekelykyllee 88 
                                       l+  i  leav+dk+ +e  +y   l+ 
  gi|224994275|ref|NP_001014973.2| 297 LSDNIGELEAVRDKAAEEL-QYLRSLDT 323
                                       5667788999999999887.77766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       790  (0.0532668); expected 296.6 (0.02)
Passed bias filter:                      531  (0.0358034); expected 296.6 (0.02)
Passed Vit filter:                        45  (0.00303419); expected 14.8 (0.001)
Passed Fwd filter:                         5  (0.000337132); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 2.14u 0.98s 00:00:03.12 Elapsed: 00:00:00.84
# Mc/sec: 2977.02
//
Query:       gi|160333224|ref|NP_036011.3|  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-62  210.9   0.0    2.3e-62  210.5   0.0    1.1  1  PF00069.20  Protein kinase domain
    2.1e-34  118.7   0.0    3.2e-34  118.1   0.0    1.1  1  PF07714.12  Protein tyrosine kinase
    3.7e-20   72.1   0.1    8.6e-20   71.0   0.0    1.7  1  PF00615.14  Regulator of G protein signaling domain
    5.2e-06   25.6   0.0    7.5e-06   25.1   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5   0.0   6.2e-66   2.3e-62       5     253 ..     194     443 ..     190     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 6.2e-66
                                    EEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEEE--TTE CS
                     PF00069.20   5 eklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvleyvegg 83 
                                    + lG+G+fG+V  ++ k tgk++A+K+l+k++ k++k ++ +  E +il+k+++ +iv+l  +fe+k++l+lv+ +++gg
  gi|160333224|ref|NP_036011.3| 194 RVLGKGGFGEVSACQMKATGKMYACKKLNKKRLKKRKGYQGAIvEKRILTKVHSRFIVSLAYAFETKTDLCLVMTIMNGG 273
                                    78*****************************9999888775546************************************ PP

                                    BHHHHHH....HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS- CS
                     PF00069.20  84 dlfdllk....kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttlv 159
                                    d+  ++     ++  +se  +  ++ qi++gle+lH+++i++rDLKpeN+Lld++g+++i+D+Gla +l++ ++k++ + 
  gi|160333224|ref|NP_036011.3| 274 DVRYHIYnvdeDNPGFSEPRAIYYTAQIISGLEHLHQRRIVYRDLKPENVLLDNDGNIRISDLGLAVELKEGQNKTKGYA 353
                                    9999999898899999**************************************************************** PP

                                    S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTS.CHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHH CS
                     PF00069.20 160 gtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsge.seedqlelirkilkkkleedepkssskseelkdlik 238
                                    gt+ +mAPE+l+ ++ey+ +vD ++lGv+lye++  + pf+ + ++ +++el ++i +++++++e+ s    +  kd+++
  gi|160333224|ref|NP_036011.3| 354 GTPGFMAPELLR-GEEYDFSVDYFALGVTLYEMIAARGPFRARgEKVENKELKQRIISEPVKYPEKFS----QASKDFCE 428
                                    ************.****************************886788888999999999999998887....89****** PP

                                    HHT-SSGGGSTTHHH CS
                     PF00069.20 239 kllekdpakRltaee 253
                                    +llekdp+kRl +++
  gi|160333224|ref|NP_036011.3| 429 QLLEKDPEKRLGFRD 443
                                    ***********9876 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   8.7e-38   3.2e-34       5     253 ..     194     442 ..     192     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 8.7e-38
                                    EEEEEESSEEEEEEEEETTTTSTEEEEEEEEEST.TSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEEEEE- CS
                     PF07714.12   5 kklGeGafGeVvegtlkgekekkevkVavKtlke.eaeeee.keefleeakimkklkhenivkllgvctkeepllivtey 82 
                                    + lG+G fGeV  +++k     +    a K+l++ + ++++  +  + e +i++k++ + iv+l  +  ++  l++v+  
  gi|160333224|ref|NP_036011.3| 194 RVLGKGGFGEVSACQMK----ATGKMYACKKLNKkRLKKRKgYQGAIVEKRILTKVHSRFIVSLAYAFETKTDLCLVMTI 269
                                    679**************....667777888885413333333789999*********************9********** PP

                                    -TTEBHHHHHHHT..HTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEEE CS
                     PF07714.12  83 vegGdLlkfLrkk..ekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyyk 160
                                    ++gGd++ ++ +   +++ ++  + + +++qi +G+e+L+++++v rdL   NvLl++++ ++isD GLa ++  ++ ++
  gi|160333224|ref|NP_036011.3| 270 MNGGDVRYHIYNVdeDNPGFSEPRAIYYTAQIISGLEHLHQRRIVYRDLKPENVLLDNDGNIRISDLGLAVEL--KEGQN 347
                                    *******99987633567788999*************************************************..45555 PP

                                    ETTTSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GT....TTTSHHHHHHHHHHTTEES-BBTTSBHHHHH CS
                     PF07714.12 161 kkekaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgesp....ypglsneevleklkegkrlekpencpeelye 236
                                    k+++      +mapE l+ +++    D ++ Gv+l+E++  ++ p     ++++n+e+ +++ + + ++ pe+ ++  ++
  gi|160333224|ref|NP_036011.3| 348 KTKGYAGTPGFMAPELLRGEEYDFSVDYFALGVTLYEMIA-ARGPfrarGEKVENKELKQRIIS-EPVKYPEKFSQASKD 425
                                    6666777789****************************99.55662222345677777777754.57899********** PP

                                    HHHHHT-SSGGGS--HH CS
                     PF07714.12 237 lmkqCweeepekRptfk 253
                                    + +q +e++pekR  f+
  gi|160333224|ref|NP_036011.3| 426 FCEQLLEKDPEKRLGFR 442
                                    *************9997 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   2.3e-23   8.6e-20       2     118 .]      58     174 ..      57     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 2.3e-23
                                    HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHH CS
                     PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreelek 78 
                                    +esl+++qp g++lF++Fl++ +++  +le+w+++e++++a +++ + +ka++I+ +yl+p+ + ++ ++d+ +++++++
  gi|160333224|ref|NP_036011.3|  58 FESLCSEQPiGKRLFQQFLKTDERHvPALELWKDIEDYDTA-DDDLRPQKAQAILAEYLDPQGTLFCnFLDQGMVTRVKE 136
                                    89*******************99999***************.9************************99*********** PP

                                    HHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  79 nlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                      +    +  lf+ + ++++e+l++ +++++l+s ++lr+
  gi|160333224|ref|NP_036011.3| 137 GPTG--SQDGLFQPLLQATMEHLSQAPFQEYLESLYFLRF 174
                                    *999..88*****************************986 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     2e-09   7.5e-06     150     263 ..     296     403 ..     289     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2e-09
                                    HHHHHHHHHHHHHHHTTEE-S--STTSEEE-TT--EEE--G...CC-EETTEEE-..----TTTS-HHHHHC-.XXXX-- CS
                      PF14531.1 150 lLTlqlirlaanLqarglvhgkispdnflldekggvfLggf...taLvragkkvvv.sevekalaPpellaekggytsnt 225
                                    + T+q+i  + +L++r +v  +++p+n+lld++g + + +     +L    +k ++ + ++  +aP++l++e        
  gi|160333224|ref|NP_036011.3| 296 YYTAQIISGLEHLHQRRIVYRDLKPENVLLDNDGNIRISDLglaVELKEGQNKTKGyAGTPGFMAPELLRGEE------- 368
                                    5699********************************9998844355665556667767888888888888885....... PP

                                    EEE-HHHHHHHHHHHHHHHHHSS---GGGGGG-SSHHH CS
                      PF14531.1 226 tkmthkldaWqlGlviysiwclrlPftllaeeaseewk 263
                                      +++++d  +lG+++y +  +r Pf    e+++++ +
  gi|160333224|ref|NP_036011.3| 369 --YDFSVDYFALGVTLYEMIAARGPFRARGEKVENK-E 403
                                    ..9***********************9988887766.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       296  (0.0199582); expected 296.6 (0.02)
Passed bias filter:                      287  (0.0193514); expected 296.6 (0.02)
Passed Vit filter:                        35  (0.00235992); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.09u 0.74s 00:00:01.83 Elapsed: 00:00:00.69
# Mc/sec: 2133.66
//
Query:       gi|51491850|ref|NP_001003912.1|  [L=1552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-68  227.4   0.0      2e-67  226.3   0.0    1.6  1  PF09128.6   Regulator of G protein signalling-like domain
    1.2e-41  142.6   3.1    2.1e-41  141.7   3.1    1.5  1  PF00621.15  RhoGEF domain
    9.9e-15   54.4   0.3    2.1e-14   53.4   0.3    1.5  1  PF00595.19  PDZ domain (Also known as DHR or GLGF)
    7.4e-08   32.1   0.1    2.7e-07   30.3   0.1    1.9  1  PF13180.1   PDZ domain
    1.2e-07   31.8   0.0    3.4e-07   30.3   0.0    1.8  1  PF00615.14  Regulator of G protein signaling domain
  ------ inclusion threshold ------
      0.014   15.5   0.2       0.83    9.8   0.1    2.9  2  PF11333.3   Protein of unknown function (DUF3135)


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   7.9e-71     2e-67       2     188 .]     348     526 ..     347     526 .. 0.99

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 7.9e-71
                                      HHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHHHH CS
                        PF09128.6   2 dspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseelaa 79 
                                      d +Fq+le+LKs+Pa+L vflry++sq+dP+pllfyL++++y+++++K++r+l  +i+++Fl+++apl+vk++e+l+a
  gi|51491850|ref|NP_001003912.1| 348 DIIFQDLEKLKSHPAYLVVFLRYIFSQADPGPLLFYLCSEVYQQTNPKDSRNLGKDIWNIFLEKNAPLRVKIPEMLQA 425
                                      679*************************************************************************** PP

                                      HH...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HHHHHHHHHHHHHHHH CS
                        PF09128.6  80 dierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdrakErrvaekllskle 157
                                      +i   + +lr++e+ r  l e+q++v++eiq+q++d+r+Kr++GLg+l+ge+d+ld  l++d+ +Er++aek+l++l 
  gi|51491850|ref|NP_001003912.1| 426 EI---DLRLRNSEDPRSALYEAQEAVMPEIQEQINDYRSKRTLGLGSLYGENDLLD--LDGDPLRERQMAEKQLAALG 498
                                      **...69*************************************************..******************** PP

                                      HHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                        PF09128.6 158 eilstsskteeeksstlqyailtylkhlgvk 188
                                      +il   sk+ee++s+++ +a++ty++h g++
  gi|51491850|ref|NP_001003912.1| 499 DIL---SKYEEDRSAPMDFAVNTYMSHTGIR 526
                                      ***...***********************97 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   3.1   8.6e-45   2.1e-41       1     180 []     768     952 ..     768     952 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 8.6e-45
                                      HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTTSS----HHHHH CS
                       PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkekkdaqkigdvfl 78 
                                      vi+El+ tE s++r+L+vl  ++++++k+ ++++++ee++ +F+n+ e++++h++  e++++  +e + +++i+d++l
  gi|51491850|ref|NP_001003912.1| 768 VINELFVTEASHLRTLRVLDLIFYQRMKK-ENLMPREELSRLFPNLPELIEIHNSWCEAMKKLREEGPIIRDISDLML 844
                                      79***************************.9*******************************77999**********8 PP

                                      HHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHHHHH CS
                       PF00621.15  79 klee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLLkel 150
                                      ++ +      +++v  +++s ++ al+l++++++k+s+f+ f++eae++p++++l+L++l+i  +qRl++YplLL+++
  gi|51491850|ref|NP_001003912.1| 845 ARFDgpareeLQQVAAQFCSYQSVALELIRTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLENI 922
                                      85555888879999**************************************************************** PP

                                      HCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                       PF00621.15 151 lkatpeshpdyealekaleaikevasqiNe 180
                                      +k+t   +++ye+l +a ++++e+++ +Ne
  gi|51491850|ref|NP_001003912.1| 923 IKHTAGGTSEYEKLCRARDQCREILKFVNE 952
                                      *****8888********************8 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.3   8.7e-18   2.1e-14       3      77 ..      49     116 ..      48     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 8.7e-18
                                      EEEESTTSBTSEEEEEETTSSSSSEEEEEESTTSHHHHHTCSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEE CS
                       PF00595.19   3 slekekrgglGfslkggsdkrdkgifvsevvpggaaeadglkeGDkIlsvNgvdvenvshdeavqaikgkkgevt 77 
                                      +++k  ++g+Gf+++g++      + v++v pggaa ++g+keGD+I++vNg+ v+n sh+e+v++ik+    v+
  gi|51491850|ref|NP_001003912.1|  49 IIQK-DQHGFGFTVSGDRI-----VLVQSVRPGGAAMRAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGA-YVA 116
                                      5677.99********9555.....9******************************************9875.444 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   1.1e-10   2.7e-07       6      53 ..      58     104 ..      51     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.1e-10
                        PF13180.1   6 svsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlk 53 
                                      +++   + r vlv+sV +++ a +ag+k GD i+kv+g+ v+++++l+
  gi|51491850|ref|NP_001003912.1|  58 GFTVSGD-RIVLVQSVRPGGAAMRAGVKEGDRIIKVNGTMVTNSSHLE 104
                                      4444554.78*******************************8887775 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.4e-10   3.4e-07       2     103 ..     354     454 ..     353     459 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.4e-10
                                      HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHH CS
                       PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreelekn 79 
                                      le+l ++++ + +F  ++ s+ +   l F+l  e ++++ + ++  +  k+I+n +l++++p  ++i++ l +e+  +
  gi|51491850|ref|NP_001003912.1| 354 LEKLKSHPAYLVVFLRYIFSQADPGPLLFYLCSEVYQQT-NPKDSRNLGKDIWNIFLEKNAPLRVKIPEMLQAEIDLR 430
                                      789999999***********9999***************.99999********************************* PP

                                      HCS..TTTTTTHHHHHHHHHHHHH CS
                       PF00615.14  80 lekaqpsrklfeeaqeevfellek 103
                                      l++++  r+++ eaqe+v+  +++
  gi|51491850|ref|NP_001003912.1| 431 LRNSEDPRSALYEAQEAVMPEIQE 454
                                      ****99999999999999876665 PP

>> PF11333.3  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.083   2.1e+02      45      68 ..     422     445 ..     402     461 .. 0.84
   2 ?    9.8   0.1   0.00033      0.83      33      75 ..     955     996 ..     941     999 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.083
                        PF11333.3  45 glqfhidmqlsraknPvhrcvlis 68 
                                       lq++id++l+++++P ++ ++++
  gi|51491850|ref|NP_001003912.1| 422 MLQAEIDLRLRNSEDPRSALYEAQ 445
                                      68**************98888765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00033
                        PF11333.3  33 esaseeqqrrLrglqfhidm.qlsraknPvhrcvlisklmqekl 75 
                                      ++  +e+++rL+g q ++d   l+ra+nP+++  +   l  +k+
  gi|51491850|ref|NP_001003912.1| 955 KQ--TENRHRLEGYQKRLDAtALERASNPLAAEFKSLDLTTRKM 996
                                      44..799************7369*******99887766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1552 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       557  (0.0375565); expected 296.6 (0.02)
Passed bias filter:                      346  (0.0233295); expected 296.6 (0.02)
Passed Vit filter:                        32  (0.00215764); expected 14.8 (0.001)
Passed Fwd filter:                         6  (0.000404558); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.32u 0.67s 00:00:02.99 Elapsed: 00:00:00.63
# Mc/sec: 6430.53
//
Query:       gi|295317338|ref|NP_001171266.1|  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-34  119.1   0.6    1.7e-34  118.4   0.6    1.3  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.6   1.1e-38   1.7e-34       1     118 []     246     361 ..     246     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.1e-38
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreele 77 
                                       s+++l+ +++gr++FreFl++efseen+ Fw+a+ee+k+ ++++ + +ka+ Iy+ y++  spke+ +d+++re ++
  gi|295317338|ref|NP_001171266.1| 246 SFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVIN 322
                                       799************************************************************************** PP

                                       HHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  78 knlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       +n+ +  ps+++f++aq ++++l+++dsyp+F++s +y++l
  gi|295317338|ref|NP_001171266.1| 323 RNMVD--PSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDL 361
                                       *****..*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       554  (0.0373542); expected 296.6 (0.02)
Passed bias filter:                      265  (0.017868); expected 296.6 (0.02)
Passed Vit filter:                        17  (0.00114625); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.71s 00:00:01.54 Elapsed: 00:00:00.65
# Mc/sec: 1493.91
//
Query:       gi|194306553|ref|NP_001123625.1|  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-69  233.3   0.2    1.4e-69  233.3   0.2    2.1  2  PF09128.6   Regulator of G protein signalling-like domain
    2.7e-39  134.9   0.0    5.8e-39  133.8   0.0    1.6  1  PF00621.15  RhoGEF domain
  ------ inclusion threshold ------
        0.1   12.5   1.2       0.99    9.3   0.2    2.7  2  PF15405.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.2   2.8e-73   1.4e-69       1     188 []      40     230 ..      40     230 .. 0.99
   2 ?   -0.6   0.3      0.16   7.9e+02      83     138 ..     583     637 ..     507     654 .. 0.73

  Alignments for each domain:
  == domain 1  score: 233.3 bits;  conditional E-value: 2.8e-73
                                       HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHH CS
                         PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseel 77 
                                       q+s+Fqsle++K+rPahL+++l++v++qf+P+pll++L+ad+ +s ++Kea++++l+++++Fl++ta+l+v+v+ ++
  gi|194306553|ref|NP_001123625.1|  40 QNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSV 116
                                       79*************************************************************************** PP

                                       HHHH...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH....HHHHHHH CS
                         PF09128.6  78 aadierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra....kErrvae 150
                                       a++++r+r++l++e+++rr++qe+ q++++++++qledfr+Kr mG++ +e+el++l+ +++kdr     +Er+vae
  gi|194306553|ref|NP_001123625.1| 117 AFELDRTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGnyeaRERHVAE 193
                                       *****************************************************************9999******** PP

                                       HHHHHHHHHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                         PF09128.6 151 kllskleeilstsskteeeksstlqyailtylkhlgvk 188
                                       +lls+lee+++t+s+ +eeks+++++ai++y++hlgv+
  gi|194306553|ref|NP_001123625.1| 194 RLLSHLEETQHTIST-DEEKSAAVVTAISLYMRHLGVR 230
                                       **********99998.9*******************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
                                       ..HHHHHTT---HHHHHHHHHHHHHHHHHH..HHHHHHHHHTT-GGGGTTTGGGG..- CS
                         PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkq..ledfrqKrsmGLgllegeldkldqel 138
                                       +r + + ++e +r++l +++q+v  ++++   l+d++  r + L++l ++ d + +e 
  gi|194306553|ref|NP_001123625.1| 583 ERGKVELAAECCREILHHVNQAVR-DMEDLlrLKDYQ--RRLDLTHLRQSSDPMLSEF 637
                                       444455677888999888887665.445440155554..6788888888877665544 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.2e-42   5.8e-39       1     180 []     419     603 ..     419     603 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.2e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTT.SS----HHH CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkek.kdaqkigdv 76 
                                       vi El+ tE ++vr L+vl++ +++p+     +++ +e+++iF+ ++e++++h+ fl++L +r +e+   +++igdv
  gi|194306553|ref|NP_001123625.1| 419 VISELLVTEAAHVRMLRVLHDLFYQPMAD-GGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESgYLIEEIGDV 494
                                       799*************************9.8*******************************99555599******* PP

                                       HHHHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  77 flklee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       +l++ +      f+k+ s ++s+++ al+ lk +++k+++f +f++eae++p++++l+L++++ + +qRl++YplLL
  gi|194306553|ref|NP_001123625.1| 495 LLARFDgaegswFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL 571
                                       *99666699******************************************************************** PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       + + ++t+es+ ++ ++e a e+++e+++++N+
  gi|194306553|ref|NP_001123625.1| 572 QSIGQNTEEST-ERGKVELAAECCREILHHVNQ 603
                                       *******9887.9*******************7 PP

>> PF15405.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0002      0.99       1      34 [.     647     679 ..     647     693 .. 0.89
   2 ?    0.6   0.0     0.096   4.8e+02     111     133 ..     734     756 ..     700     758 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                         PF15405.1   1 lifkgqlkkkegsksesadiqvyLfDhalLlvki 34 
                                       l+++g+l  + ++++   +++v L+D +lLl++ 
  gi|194306553|ref|NP_001123625.1| 647 LVHEGPLTWRVTKDKAI-EVHVLLLDDLLLLLQR 679
                                       79*********999665.************9875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.096
                         PF15405.1 111 gyeltLyastlaarqkwlekIek 133
                                        + + L a+t ++r++w++ I++
  gi|194306553|ref|NP_001123625.1| 734 AQIYELVAQTSSERKNWCNLITE 756
                                       3447899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       441  (0.029735); expected 296.6 (0.02)
Passed bias filter:                      327  (0.0220484); expected 296.6 (0.02)
Passed Vit filter:                        23  (0.00155081); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.55u 0.63s 00:00:02.18 Elapsed: 00:00:00.56
# Mc/sec: 4213.17
//
Query:       gi|13385914|ref|NP_080694.1|  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-35  119.4   5.8    1.4e-34  118.7   5.8    1.3  1  PF00615.14  Regulator of G protein signaling domain
     0.0012   18.4   0.1     0.0015   18.0   0.1    1.3  1  PF09128.6   Regulator of G protein signalling-like domain
  ------ inclusion threshold ------
       0.17   11.9   1.5       0.85    9.6   0.7    2.4  3  PF03748.9   Flagellar basal body-associated protein FliL


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   5.8   2.7e-38   1.4e-34       1     117 [.      41     154 ..      41     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 2.7e-38
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   sle+lled++g++ FreFl++efseen+ Fwla+e+fkk+++++++++kakeIy ++l++++++++n++ + r  +ek le
  gi|13385914|ref|NP_080694.1|  41 SLENLLEDPEGVQRFREFLKKEFSEENVLFWLACEDFKKTEDRKQMQEKAKEIYMTFLSNKASSQVNVEGQSR-LTEKILE 120
                                   699*********************************************************************9.7888888 PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylr 117
                                   +  p++ +f+++q+++f+l++ dsy++Flks+l+l+
  gi|13385914|ref|NP_080694.1| 121 E--PHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLK 154
                                   8..*******************************86 PP

>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1     3e-07    0.0015       7      78 ..      41     113 ..      37     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3e-07
                                   -HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHH.HHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHHH CS
                     PF09128.6   7 slelLKsrPahLavflryvlsqfdPspllfyLia.dlyksatsKearrlaleihstFldrtaplkvkvseela 78 
                                   sle+L   P  +  f +++  +f    +lf L   d+ k    K++++ a ei+ tFl  +a  +v+v+ ++ 
  gi|13385914|ref|NP_080694.1|  41 SLENLLEDPEGVQRFREFLKKEFSEENVLFWLACeDFKKTEDRKQMQEKAKEIYMTFLSNKASSQVNVEGQSR 113
                                   6777777777777788888899988999999999456666889*******************98888876543 PP

>> PF03748.9  Flagellar basal body-associated protein FliL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.25   1.3e+03      62      81 ..      46      65 ..      39      69 .. 0.82
   2 ?    9.6   0.7   0.00017      0.85      36      84 ..      80     126 ..      69     141 .. 0.77
   3 ?   -0.5   0.0      0.24   1.2e+03       5      37 ..     129     162 ..     125     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
                     PF03748.9 62 Lstaegkeklkeeileevnk 81
                                  L+++eg ++ +e +++e ++
  gi|13385914|ref|NP_080694.1| 46 LEDPEGVQRFREFLKKEFSE 65
                                  78999999999999999875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
                     PF03748.9  36 aeeleekkpvirdaillllssksaeeLstaegkeklkeeileevnkall 84 
                                    e  ++ + + +   +++ls+k +++++  eg+ +l e+ilee   +l+
  gi|13385914|ref|NP_080694.1|  80 TEDRKQMQEKAKEIYMTFLSNKASSQVNV-EGQSRLTEKILEEPH-PLM 126
                                   4445555567889999***********86.************977.664 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.24
                     PF03748.9   5 plepfvvnladd.ggdrylqvgitlevedakaae 37 
                                   +l++ ++nl +    +r+l+  + l+ + ++++e
  gi|13385914|ref|NP_080694.1| 129 KLQDQIFNLMKYdSYSRFLKSDLFLKPKRTEEEE 162
                                   6666777777664677888888888776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       850  (0.0573124); expected 296.6 (0.02)
Passed bias filter:                      355  (0.0239363); expected 296.6 (0.02)
Passed Vit filter:                        28  (0.00188794); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.60s 00:00:01.26 Elapsed: 00:00:00.62
# Mc/sec: 762.05
//
Query:       gi|84000007|ref|NP_001033107.1|  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-63  214.8   0.0    1.4e-63  214.4   0.0    1.2  1  PF00069.20  Protein kinase domain
    8.4e-36  123.3   0.0    1.1e-35  122.9   0.0    1.1  1  PF07714.12  Protein tyrosine kinase
    5.5e-19   68.4   0.0    1.9e-18   66.6   0.0    1.9  1  PF00615.14  Regulator of G protein signaling domain
    4.7e-05   22.4   0.0    7.8e-05   21.7   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.4   0.0   3.7e-67   1.4e-63       2     260 .]     187     448 ..     186     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 214.4 bits;  conditional E-value: 3.7e-67
                                      EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEEE CS
                       PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvle 78 
                                      ++ + lG+G+fG+V+ ++ + tgk++A+K+l+k++ k++k ++ ++ E +il+k+n+ ++v+l  ++e+kd l+lvl 
  gi|84000007|ref|NP_001033107.1| 187 RQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALnEKQILEKVNSRFVVSLAYAYETKDALCLVLT 264
                                      66799******************************999987765546******************************* PP

                                      --TTEBHHHHHH..HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS- CS
                       PF00069.20  79 yveggdlfdllk..kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakklekssek 154
                                      +++ggdl  ++    +  + e  + ++a +i++gle lH+++i++rDLKpeNiLld++g+++i+D+Gla +   ++++
  gi|84000007|ref|NP_001033107.1| 265 LMNGGDLKFHIYhmGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVH-VPEGQT 341
                                      ********99996666778**************************************************97.99999* PP

                                      STSS-S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHH CS
                       PF00069.20 155 lttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepksssksee 232
                                       + +vgt  YmAPEv++ ++ yt + D+W+lG++lye++ g+ pf++++++ ++e +++  k+  ee     ++ s++
  gi|84000007|ref|NP_001033107.1| 342 IKGRVGTVGYMAPEVVR-NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEY-T--DRFSSQ 415
                                      *****************.******************************88888888877777433333.3..34459* PP

                                      HHHHHHHHT-SSGGGSTT.....HHHHHCSGGH CS
                       PF00069.20 233 lkdlikkllekdpakRlt.....aeeilkhpwl 260
                                      +++l+++ll kdpa+Rl      a+e+++hp++
  gi|84000007|ref|NP_001033107.1| 416 ARSLCSQLLSKDPAERLGcrgggAREVKEHPLF 448
                                      *****************9999999999999976 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0     3e-39   1.1e-35       4     249 ..     189     431 ..     186     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 3e-39
                                      EEEEEEESSEEEEEEEEETTTTSTEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEEE CS
                       PF07714.12   4 gkklGeGafGeVvegtlkgekekkevkVavKtl.keeaeeee.keefleeakimkklkhenivkllgvctkeeplliv 79 
                                       + lG+G fGeV+ ++++     +    a K+l k++ ++++ +++ l+e +i++k++ + +v+l  ++ +++ l++v
  gi|84000007|ref|NP_001033107.1| 189 YRVLGKGGFGEVCACQVR----ATGKMYACKKLeKKRIKKRKgEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262
                                      689***************....777778999994334444442566788***************************** PP

                                      EE--TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTS CS
                       PF07714.12  80 teyvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekdd 157
                                      + +++gGdL+ ++ +  +  +   + + +a++i+ G+e L+++++v rdL   N+Ll+++++++isD GLa ++    
  gi|84000007|ref|NP_001033107.1| 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHV---P 337
                                      ****************9*********************************************************...4 PP

                                      EEEETTTSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GTTTTSHHHH...HHHHHHTTEES-BBTTSBH CS
                       PF07714.12 158 yykkkekaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee...vleklkegkrlekpencpe 232
                                      + ++ +++   v +mapE+++++++t   D W+ G ll+E++  g+sp+++ +++     +e+l ++   e  +  ++
  gi|84000007|ref|NP_001033107.1| 338 EGQTIKGRVGTVGYMAPEVVRNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIkreEVERLVKEVAEEYTDRFSS 414
                                      44555677899*******************************9.99**887755430113344444444555566777 PP

                                      HHHHHHHHHT-SSGGGS CS
                       PF07714.12 233 elyelmkqCweeepekR 249
                                      +  +l +q ++++p++R
  gi|84000007|ref|NP_001033107.1| 415 QARSLCSQLLSKDPAER 431
                                      77777777777777777 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   5.1e-22   1.9e-18       2     118 .]      53     170 ..      52     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 5.1e-22
                                      HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHH CS
                       PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreel 76 
                                      ++sl+e+qp gr lFreF+ ++ +  ++ +F++ v e++ + ++e++++  +++++++l++  p  + +++++l++++
  gi|84000007|ref|NP_001033107.1|  53 YHSLCERQPiGRLLFREFCATRPELtRCTAFLDGVSEYEVT-PDEKRKACGRRLMQNFLSHTGPDLIpEVPRQLVSNC 129
                                      689******************55559***************.************************************ PP

                                      HHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                       PF00615.14  77 eknlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                      +++le+  p+++lf+e+ + ++e+l++ ++ ++l+s +++r+
  gi|84000007|ref|NP_001033107.1| 130 AQRLEQ-GPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRF 170
                                      ******.********************************986 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.1e-08   7.8e-05     161     272 ..     301     406 ..     298     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-08
                                      HHHHTTEE-S--STTSEEE-TT--EEE--GCC-EE..TTEEE-.----TTTS-HHHHHC-.XXXX--EEE-HHHHHHH CS
                        PF14531.1 161 nLqarglvhgkispdnflldekggvfLggftaLvr..agkkvvvsevekalaPpellaekggytsnttkmthkldaWq 236
                                       L+ + +v  +++p+n+lld +g + + + +  v   +g+  +++   +++  pe++++         ++t++ d W+
  gi|84000007|ref|NP_001033107.1| 301 DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHvpEGQTIKGRVGTVGYMAPEVVRNE--------RYTFSPDWWA 370
                                      69999************************9655541178888877777999888888775........79******** PP

                                      HHHHHHHHHHSS---GGGGGG-SSHHHHTT-----H CS
                        PF14531.1 237 lGlviysiwclrlPftllaeeaseewkfklckkvpe 272
                                      lG  +y +   + Pf + ++++++e   +l+k+v e
  gi|84000007|ref|NP_001033107.1| 371 LGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAE 406
                                      **********************99954444556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       542  (0.0365451); expected 296.6 (0.02)
Passed bias filter:                      449  (0.0302744); expected 296.6 (0.02)
Passed Vit filter:                        42  (0.00283191); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.45u 0.88s 00:00:02.33 Elapsed: 00:00:00.72
# Mc/sec: 2135.40
//
Query:       gi|227430349|ref|NP_001153070.1|  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-31  106.7   0.3      6e-31  105.9   0.3    1.4  1  PF00778.12  DIX domain
    5.8e-29  100.6   0.3    1.1e-28   99.6   0.3    1.5  1  PF00615.14  Regulator of G protein signaling domain
    5.7e-16   57.9   1.8    2.5e-15   55.8   1.8    2.2  1  PF08833.5   Axin beta-catenin binding domain


Domain annotation for each model (and alignments):
>> PF00778.12  DIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.3   1.2e-34     6e-31       2      84 .]     751     832 .]     750     832 .] 0.97

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.2e-34
                        PF00778.12   2 eetkvvYylddeetpylvkipkreeevTLgdfKaalsrkgnykyffkaldpdfgr.vVkeevteDdakLplfegkvv 77 
                                       +++ v+Yy+++e++py++ + +r+  vTLg+fK++l++kg+y+y+fk+++++f++ vV+eev+eD+a+Lp+fe+k++
  gi|227430349|ref|NP_001153070.1| 751 DSIVVAYYFCGEPIPYRTLVRGRA--VTLGQFKELLTKKGSYRYYFKKVSDEFDCgVVFEEVREDEAVLPVFEEKII 825
                                       5789********************..*************************************************** PP

                        PF00778.12  78 awlesee 84 
                                       +++e+++
  gi|227430349|ref|NP_001153070.1| 826 GKVEKVD 832
                                       ***9975 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.3   2.3e-32   1.1e-28       1     118 []      93     215 ..      93     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2.3e-32
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS....SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka....keqeelskkakeIynkylapssp.kelnidkkl 72 
                                       sl+sll+dq+g+slFr+Fl++e + + l+Fw+a+  f+k     +++e++ k a++Iy+ky+ +s+   + + + ++
  gi|227430349|ref|NP_001153070.1|  93 SLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACSGFRKLepcdSNEEKRLKLARAIYRKYILDSNGiVSRQTKPAT 169
                                       799****************************************999****************887775666****** PP

                                       HHHHHHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  73 reeleknlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       ++ +++++ k+q ++ +f++aq+e+++++e+++yp Flks++yl++
  gi|227430349|ref|NP_001153070.1| 170 KSFIKDCVMKQQIDPAMFDQAQTEIQSTMEENTYPSFLKSDIYLEY 215
                                       *******************************************986 PP

>> PF08833.5  Axin beta-catenin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   1.8   5.1e-19   2.5e-15       1      44 [.     468     499 ..     468     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.1e-19
                         PF08833.5   1 eDdpqsILDdHvsRVlktPgtqSPgpnisslrrgrhspgsrspd 44 
                                       e++p+sILD+Hv+RV++tPg+qSPgp            g+rspd
  gi|227430349|ref|NP_001153070.1| 468 EENPESILDEHVQRVMRTPGCQSPGP------------GHRSPD 499
                                       89***********************9............444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       780  (0.0525925); expected 296.6 (0.02)
Passed bias filter:                      456  (0.0307464); expected 296.6 (0.02)
Passed Vit filter:                        34  (0.0022925); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.83u 0.83s 00:00:02.66 Elapsed: 00:00:00.70
# Mc/sec: 3102.57
//
Query:       gi|124001566|ref|NP_001074212.1|  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-15   56.7   0.1    3.3e-15   56.2   0.1    1.2  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   2.2e-19   3.3e-15       2      93 ..      52     145 ..      51     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.2e-19
                                       HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHH CS
                        PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklree 75 
                                       ++sl+++qp gr lFr+F++++ +  +++eF++av e++ +  +ee  +   +I++++++++s+  l +i+ ++++e
  gi|124001566|ref|NP_001074212.1|  52 FSSLCDKQPiGRLLFRQFCDTKPDLkRCIEFLDAVAEYEVT-IEEEQREFGLAIFSRFFKEKSEVPLpEIPPDIVKE 127
                                       899******************66658***************.9999999**************************** PP

                                       HHHHHCS..TTTTTTHHH CS
                        PF00615.14  76 leknlekaqpsrklfeea 93 
                                       ++ nl++++ps+++fee+
  gi|124001566|ref|NP_001074212.1| 128 CKWNLKQNSPSQNVFEEC 145
                                       ****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       275  (0.0185422); expected 296.6 (0.02)
Passed bias filter:                      230  (0.0155081); expected 296.6 (0.02)
Passed Vit filter:                        18  (0.00121367); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.65s 00:00:01.21 Elapsed: 00:00:00.69
# Mc/sec: 669.61
//
Query:       gi|226958677|ref|NP_001152957.1|  [L=1097]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-39  134.2   3.1    4.3e-39  134.2   3.1    3.3  3  PF00621.15  RhoGEF domain
    5.4e-17   62.0   0.0    3.6e-16   59.3   0.0    2.4  1  PF13716.1   Divergent CRAL/TRIO domain
    7.3e-09   35.8   0.2    7.3e-09   35.8   0.2    5.0  3  PF00435.16  Spectrin repeat
    6.9e-07   29.4   0.7    1.7e-06   28.1   0.2    1.9  1  PF00169.24  PH domain
    2.5e-05   23.5   0.5    6.6e-05   22.2   0.1    1.9  1  PF00018.23  SH3 domain
    8.4e-05   22.0   0.1    0.00072   19.0   0.1    2.4  2  PF14604.1   Variant SH3 domain
  ------ inclusion threshold ------
      0.031   13.7   0.0      0.072   12.5   0.0    1.6  1  PF07653.12  Variant SH3 domain
      0.032   13.7   3.1      0.054   13.0   0.0    2.6  2  PF00015.16  Methyl-accepting chemotaxis protein (MCP) signall
        1.8    8.6   5.5        2.9    8.0   1.5    2.7  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4       0.1   1.6e+02      89     131 ..     262     303 ..     189     324 .. 0.75
   2 ?    0.6   0.7      0.26   4.2e+02      41     119 ..     376     499 ..     334     516 .. 0.58
   3 !  134.2   3.1   2.6e-42   4.3e-39       1     180 []     584     759 ..     584     759 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
                                       HHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHH CS
                        PF00621.15  89 eYisnfdkalkllkelskknskfkkflkeaeespesskldLes 131
                                       + + n+ +++ ll++l +++++f +f ++ ++ +  + l+L++
  gi|226958677|ref|NP_001152957.1| 262 DQLDNQATVQRLLAQLNETEAAFDEFWAKHQQ-KLEQCLQLRH 303
                                       44567888888888888888888888887777.3445555555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
                                       HHSCCHHHHHHHHHHHHHHHHH......................................HHHTT....SS----HH CS
                        PF00621.15  41 siFsnieeilklhkeflekLee......................................rlkek....kdaqkigd 75 
                                       si +++ee+ +l ++f ++                                         +   +       q+i +
  gi|226958677|ref|NP_001152957.1| 376 SIHPKCEELQHLCDHFASEVTRrrgllskslelhslletsmkwsdegifllasqpvdkcqS---QdgaeAALQEIEK 449
                                       5666666666666666666666555555555555555555555555555555555543321...1234433444444 PP

                                       HH.....HHHHSHHHHHHHH.HHTHHHHHHHHHHHHHH-HHHHHHHHHHH CS
                        PF00621.15  76 vf.....lkleeflkvYseY.isnfdkalkllkelskknskfkkflkeae 119
                                        +      k +e+ ++Y+eY +   ++ l+++++  +k+++ ++++ + +
  gi|226958677|ref|NP_001152957.1| 450 FLetgaeNKIQELNEIYKEYeCILNQDLLEHVQKVFQKQESTEEMFHRRQ 499
                                       44444544466688888888767777777777775555555666666333 PP

  == domain 3  score: 134.2 bits;  conditional E-value: 2.6e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.......TSSHHHHHHHHSCCHHHHHHHHHH.HHHHHHHHHHTTSS- CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkes......ksilseeeiksiFsnieeilklhke.flekLeerlkekkda 70 
                                       v++El++tEr+Yv++L  + e y  ++ ++      ++ l+ ++++++F+n+eei+++h++ fl +Le    + +  
  gi|226958677|ref|NP_001152957.1| 584 VMNELLDTERAYVEELLCVLEGYAAEMDNPlmahliSTGLQ-NKKNILFGNMEEIYHFHNRiFLRELES---CIDCP 656
                                       79******************************777555444.7899*************6659******...88999 PP

                                       ---HHHHHHHHSHHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  71 qkigdvflkleeflkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       + +g +fl++ e +++Y++Y++n++++++l +++s ++  f+++ k     +  +kl+L+s+L+kPvqR+++Y+lLL
  gi|226958677|ref|NP_001152957.1| 657 ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPF-FQECQK-----KLDHKLSLDSYLLKPVQRITKYQLLL 727
                                       *********555588****************99988866.555555.....45569********************* PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       ke+lk++++ +   e+l++al++i  +++ +N+
  gi|226958677|ref|NP_001152957.1| 728 KEMLKYSKHCE-GAEDLQEALSSILGILKAVND 759
                                       *******8666.89***************9996 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   2.2e-19   3.6e-16       4     148 ..      30     172 ..      27     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.2e-19
                         PF13716.1   4 lltggkdregrpvvvfiakyl...pstddydkllkyllhtledeivgkp..yvlVyfhtglssenkpslswlkklyk 75 
                                       +l+gg+ ++g+pv++f+       ++ +++++++ yl ++++ +  ++   ++lV++ ++    +k  +  +k    
  gi|226958677|ref|NP_001152957.1|  30 YLSGGRGQDGSPVITFPDYPAfseIPDKEFQNVMTYLTSIPSLQ--DAGigFILVIDRRQ----DK--WTSVKASVL 98 
                                       789**************55554687777*************999..55578*********....78..999999999 PP

                         PF13716.1  76 tlprrykknlkkvylvhpstflksilstllslfvskkflkkk..viyisslseLseyiditqlkkslpgvysyde 148
                                        +  +++ nl+ v++++p+ f++ +ls +   f +  f k k  v ++ss+ eL+ yid++ql+++l+g+++y++
  gi|226958677|ref|NP_001152957.1|  99 RIAASFPANLQLVLVLRPTGFFQRTLSDIAFKFNRDEF-KMKvpVMMLSSVPELHGYIDKSQLTEDLGGTLDYCH 172
                                       999****************6666666665555555555.44445999**************************98 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   8.6       0.2   3.2e+02       4     105 .]     183     297 ..     180     297 .. 0.79
   2 !   35.8   0.2   4.4e-12   7.3e-09       4     103 ..     302     402 ..     299     404 .. 0.85
   3 ?    2.1   2.8      0.14   2.2e+02       8      65 ..     457     510 ..     455     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
                                       HHHHHHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH............HHHHHH CS
                        PF00435.16   4 qqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaa.qqervealn............elaekl 67 
                                       + fa  +++  ++++   ++l++++l++d++++   l +h++ +a +++  q  +++ n              a ++
  gi|226958677|ref|NP_001152957.1| 183 ESFALMVKQTAQMLQAFGTELAETELPNDVQSTSLVLSAHTEKKAKVKEdLQLALKEGNsileslreplaeSAAHSV 259
                                       678888999999999999********************999999988887888887777666755555553333333 PP

                                       HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16  68 ideghsaseeieerleelnerWeeLlelaaerkqkLee 105
                                        + + + +  ++  l++lne  ++  e +a+++qkLe+
  gi|226958677|ref|NP_001152957.1| 260 NQDQLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQ 297
                                       44455566999999999999999999999999999986 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 4.4e-12
                                       HHHHHHHHHHHHHHHHH.HHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH CS
                        PF00435.16   4 qqfaqdadeleeWieek.eellssedlgkdleevqallkkhkaleaelaaqqervealnelaeklideghsaseeie 79 
                                       + f+q  +e++  ++ + +++++ +d+g++l++vq llk+++a+e+  + + ++ +al   +++li+++h+a ++i+
  gi|226958677|ref|NP_001152957.1| 302 RHFEQGFREVKTTLDSMsQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARALSLEGQQLIENRHYAVDSIH 378
                                       55555555555555555333335599*************************************************** PP

                                       HHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16  80 erleelnerWeeLlelaaerkqkL 103
                                        ++eel++  ++  + + +r+  L
  gi|226958677|ref|NP_001152957.1| 379 PKCEELQHLCDHFASEVTRRRGLL 402
                                       **************9999999877 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
                                       HHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16   8 qdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervealnelae 65 
                                       ++++el+e  +e e +l ++dl   le+vq+  +k +  e+ +  +q  +++l + ++
  gi|226958677|ref|NP_001152957.1| 457 NKIQELNEIYKEYECIL-NQDL---LEHVQKVFQKQESTEEMFHRRQASLKKLAAKQT 510
                                       56788888888888888.6666...8**************************998776 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2     1e-09   1.7e-06       3     103 ..     792     893 ..     790     894 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1e-09
                                       EEEEEEEEETTSSSEEEEEEEEETTEEEEESSTTT.......TCESSESEEEESTTEEEEEECTTTCSTTSSSSEEE CS
                        PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskk.......ksykapkgsiplndctvkkasstkfgaqkesnnyf 72 
                                       k+G    k+  + ++ +r+++L+++ +l++k++++         ++++k+s +++ + +++  +        ++  f
  gi|226958677|ref|NP_001152957.1| 792 KKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREEngegyekAPSYSYKQSLNMTAVGITENVKG-------DTKKF 861
                                       77888888899999**************************9999999999999999999999997.......799** PP

                                       EEEETTS.EEEEEEESSHHHHHHHHHHHHHHH CS
                        PF00169.24  73 eitfknv.esyllsaeseeerkrWvqalknll 103
                                       ei+ + + e y+++a+++e + +Wv+ ++++l
  gi|226958677|ref|NP_001152957.1| 862 EIWYNAReEVYIIQAPTPEIKAAWVNEIRKVL 893
                                       ***999999*******************9986 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     4e-08   6.6e-05       9      48 .]    1017    1056 ..    1013    1056 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4e-08
                                        SSTTB-EB-TTEEEEEEEESSSSEEEEEETTSTEEEEEEG CS
                        PF00018.23    9 resdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48  
                                          +d L ++ GD+++v+e+  +g w +r+ ++ keG++P+
  gi|226958677|ref|NP_001152957.1| 1017 GGPDTLAMRSGDMVEVVEEGAEGLWYVRDLTSSKEGWVPA 1056
                                        5699******************9999****99*******7 PP

>> PF14604.1  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.72   1.2e+03      20      35 ..      79      94 ..      79     107 .. 0.83
   2 !   19.0   0.1   4.4e-07   0.00072       9      46 ..    1018    1057 ..    1014    1059 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.72
                         PF14604.1 20 vitvleetedgWllGe 35
                                      +i+v+ + +d W  ++
  gi|226958677|ref|NP_001152957.1| 79 FILVIDRRQDKWTSVK 94
                                      6999*999****9987 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.4e-07
                         PF14604.1    9 dddELslskGdvitvleetedgWllGe.l.tGrtGlvPan 46  
                                        ++d L ++ Gd++ v+ee  +g ++++ l +++ G+vPa+
  gi|226958677|ref|NP_001152957.1| 1018 GPDTLAMRSGDMVEVVEEGAEGLWYVRdLtSSKEGWVPAS 1057
                                        5899************9989999999865699******98 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05     0.072      12      53 ..    1018    1060 ..    1007    1062 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
                                        CTTB--B-TTEEEEEE.ECCGCTCEEEEE..CCCEEEEEGCHCC CS
                        PF07653.12   12 dpseLsfkkGdvikvlgskesdgwwlgev..gGrvGlfPsslve 53  
                                         p  L  + Gd ++v+ +++++g w+++     + G++P s+++
  gi|226958677|ref|NP_001152957.1| 1018 GPDTLAMRSGDMVEVV-EEGAEGLWYVRDltSSKEGWVPASSLS 1060
                                        56669999********.9999999***99988999****99885 PP

>> PF00015.16  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.3e-05     0.054     101     210 ..     283     391 ..     267     394 .. 0.86
   2 ?   -0.0   0.1      0.31   5.2e+02      88     144 ..     455     509 ..     444     516 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
                                       HHHHHHHH..............HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00015.16 101 lieeivkeindsveslqevrteveegselveetgealkeIveavaeiadlvqeiaaaseeqsasieevnqaveeide 177
                                       +  e  ++ ++ +e   + r + e+g  +v++t +++++  +a +++ +++  ++   ++++a  e+ + av++   
  gi|226958677|ref|NP_001152957.1| 283 AFDEFWAKHQQKLEQCLQLR-HFEQGFREVKTTLDSMSQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARA 358
                                       55555555555555555554.5899*************9999*********************************** PP

                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
                        PF00015.16 178 vtkenaalveeaaaaaetleeqaeeleelvaqF 210
                                       ++ e + l+e+   a+ +++ + eel++l ++F
  gi|226958677|ref|NP_001152957.1| 359 LSLEGQQLIENRHYAVDSIHPKCEELQHLCDHF 391
                                       *****************************9999 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.31
                                       HHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHCCHHHHHHHHH CS
                        PF00015.16  88 AersaqaakeieklieeivkeindsveslqevrteveegselveetgealkeIveav 144
                                       Ae+  q  +ei k  e i ++  d +e +q+v ++ e++ e+ ++ + +lk+++++ 
  gi|226958677|ref|NP_001152957.1| 455 AENKIQELNEIYKEYECILNQ--DLLEHVQKVFQKQESTEEMFHRRQASLKKLAAKQ 509
                                       555556667777777777777..89999999*9*********999999999998765 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.5    0.0018       2.9      32     102 ..     445     507 ..     434     512 .. 0.90
   2 ?    1.0   0.1      0.26   4.2e+02      51      94 ..     670     718 ..     664     735 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
                                       HHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS..TTTTTTHHHHHHHHHHHH CS
                        PF00615.14  32 laveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlekaqpsrklfeeaqeevfelle 102
                                       +++e+f ++   e+ +++ +eIy++y        + ++++l e+++k  +k++ ++++f++ q+++++l +
  gi|226958677|ref|NP_001152957.1| 445 QEIEKFLET-GAENKIQELNEIYKEYE-------CILNQDLLEHVQKVFQKQESTEEMFHRRQASLKKLAA 507
                                       689999999.9999999*******997.......9999*************************99888755 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
                                       HHHHHHHTSTTSTTSS....TS-HHHHHHHHHHHCS...TTTTTTHHHH CS
                        PF00615.14  51 keIynkylapsspkel....nidkklreeleknleka.qpsrklfeeaq 94 
                                       ++Iy+ky++++  +e       d+  ++e++k+l ++ + ++ l++ +q
  gi|226958677|ref|NP_001152957.1| 670 FQIYEKYCQNKPRSESlwrqCSDCPFFQECQKKLDHKlSLDSYLLKPVQ 718
                                       6899999987776553233345677777777777776544455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1097 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       860  (0.0579866); expected 296.6 (0.02)
Passed bias filter:                      428  (0.0288585); expected 296.6 (0.02)
Passed Vit filter:                        45  (0.00303419); expected 14.8 (0.001)
Passed Fwd filter:                        10  (0.000674263); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.08u 0.80s 00:00:02.88 Elapsed: 00:00:00.70
# Mc/sec: 4090.76
//
Query:       gi|312222673|ref|NP_001185932.1|  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-35  119.8   0.3    1.8e-34  118.3   0.0    1.9  2  PF00615.14  Regulator of G protein signaling domain
    3.3e-17   62.0   0.0    1.2e-16   60.1   0.0    2.0  2  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
    3.6e-14   52.2   0.1    9.5e-14   50.9   0.1    1.7  1  PF00631.17  GGL domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.87   4.3e+03      46      82 ..     155     190 ..     137     213 .. 0.61
   2 !  118.3   0.0   3.6e-38   1.8e-34       3     118 .]     335     447 ..     333     447 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.87
                                       HHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS CS
                        PF00615.14  46 lskkakeIynkylapsspkelnidkklreeleknlek 82 
                                       + ++a++   +++ ++++ + ++dkk r+++e+++ +
  gi|312222673|ref|NP_001185932.1| 155 RLQRAFARKWEFIFMQAEAQAKVDKK-RDKIERKILD 190
                                       44444444445555555566666554.3444444444 PP

  == domain 2  score: 118.3 bits;  conditional E-value: 3.6e-38
                                       HHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHH CS
                        PF00615.14   3 eslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreelekn 79 
                                       ++ l+d+ gr+ F +Flesefs+enl+Fwlave++k++ + +e+ ++++eI++++lap++p+ +n+d+k  +++++n
  gi|312222673|ref|NP_001185932.1| 335 DEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKRR-PIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQN 410
                                       7889**********************************.************************************** PP

                                       HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       +++  p r +fe+aqe++++l+++dsyp+F++s  y++l
  gi|312222673|ref|NP_001185932.1| 411 VKE--PGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 447
                                       ***..*******************************986 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.4e-20   1.2e-16       1      74 []      40     110 ..      40     110 .. 0.97
   2 ?   -2.2   0.0      0.71   3.5e+03      63      73 ..     414     428 ..     383     429 .. 0.69

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.4e-20
                                       SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH--SSSSS-EEX CS
                        PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                                       g+++++ +  l++++++f+Gs++v+WL++n++  ied  eA++lg l+ ++g++ +++++  +++d+  +fY+f
  gi|312222673|ref|NP_001185932.1|  40 GIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLT--IEDPVEALHLGTLMAAHGYFFPISDHVLTLKDD-GTFYRF 110
                                       799****************************9..***************************878888.*****9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.71
                                       H....--SSSSS-EE CS
                        PF00610.16  63 g....FrdskqafYq 73 
                                       +    F+d ++++Y 
  gi|312222673|ref|NP_001185932.1| 414 PgrytFEDAQEHIYK 428
                                       245579999999996 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   1.9e-17   9.5e-14       4      67 ..     255     315 ..     253     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.9e-17
                        PF00631.17   4 klklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccwi 67 
                                        + l ++i++++ +L+r+r+k+Sk++++l++Y+e   ++Dp+l ++ +p+    Npw ++++ +w 
  gi|312222673|ref|NP_001185932.1| 255 EDELHQQIKYWQIQLDRHRLKMSKVADSLLSYTEqyVEYDPFLVPP-DPS----NPWLSDDTTFWE 315
                                       578999****************************************.999....********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       538  (0.0362754); expected 296.6 (0.02)
Passed bias filter:                      362  (0.0244083); expected 296.6 (0.02)
Passed Vit filter:                        37  (0.00249477); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.68s 00:00:01.72 Elapsed: 00:00:00.54
# Mc/sec: 2271.96
//
Query:       gi|145046273|ref|NP_081420.2|  [L=1544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-84  279.6   4.2    9.2e-84  279.6   4.2    3.2  3  PF09128.6   Regulator of G protein signalling-like domain
    7.2e-43  146.5   0.6    7.2e-43  146.5   0.6    2.1  1  PF00621.15  RhoGEF domain
    2.5e-12   46.8   0.5    8.5e-12   45.0   0.5    2.0  1  PF00595.19  PDZ domain (Also known as DHR or GLGF)
    1.1e-06   28.3   0.2    3.4e-06   26.8   0.2    1.8  1  PF13180.1   PDZ domain
  ------ inclusion threshold ------
        2.1    8.2  14.8       0.37   10.7   5.1    2.7  2  PF03938.9   Outer membrane protein (OmpH-like)
        3.8    7.7   8.4       0.96    9.7   0.1    3.0  2  PF13476.1   AAA domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.68   1.7e+03      97     106 ..     212     221 ..     189     260 .. 0.50
   2 !  279.6   4.2   3.7e-87   9.2e-84       1     188 []     369     559 ..     369     559 .. 1.00
   3 ?    1.4   0.3     0.075   1.8e+02      83     118 ..     957     993 ..     898    1025 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.68
                                    HHHHHHHHHH CS
                      PF09128.6  97 vlqelqqrvl 106
                                    +lq+ q+r++
  gi|145046273|ref|NP_081420.2| 212 MLQKEQERLQ 221
                                    4433333332 PP

  == domain 2  score: 279.6 bits;  conditional E-value: 3.7e-87
                                    HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHHHHH CS
                      PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseelaad 80 
                                    q+s+Fqs+elLKsrPahLavfl++v+sqfdP++ll+yL++dlyk+++sKe+rr++le+h++Fldr+a+lkv+v+ee+++d
  gi|145046273|ref|NP_081420.2| 369 QCSCFQSIELLKSRPAHLAVFLHHVVSQFDPATLLCYLYSDLYKQTNSKETRRVFLEFHQFFLDRSAHLKVPVPEEISVD 448
                                    8******************************************************************************* PP

                                    H...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH...HHHHHHHHHHHHHH CS
                      PF09128.6  81 ierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra...kErrvaekllskle 157
                                    +e+rr+el++e+++r ++q++q+rv++e+q++ledfrqKrsmGL+l+e+el+kld+e++kdr    kEr++ae++++k+e
  gi|145046273|ref|NP_081420.2| 449 LEKRRPELIPEDLHRLYIQTMQERVHPEVQRHLEDFRQKRSMGLTLAESELTKLDAERDKDRGtleKERACAEQIVTKIE 528
                                    **************************************************************99**************** PP

                                    HHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                      PF09128.6 158 eilstsskteeeksstlqyailtylkhlgvk 188
                                    e+l+t++++eee+sst+qy+il+y+k+lgvk
  gi|145046273|ref|NP_081420.2| 529 EVLMTAQAVEEERSSTMQYVILMYMKYLGVK 559
                                    *****************************98 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.075
                                    ..HHHHHTT---HHHHHHHHHHHHHH.HHHHHHHHHH CS
                      PF09128.6  83 rrrselrkeetlrrvlqelqqrvlee.iqkqledfrq 118
                                    +r++ +++++ +r++l  ++q+v e+  ++ led++ 
  gi|145046273|ref|NP_081420.2| 957 EREKVKKAADHCRQILNYVNQAVREAeNKQRLEDYQR 993
                                    466778899************9987515567999986 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.6   2.9e-46   7.2e-43       1     180 []     792     977 ..     792     977 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 2.9e-46
                                    HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHH.HH.HTTSS----HHHHH CS
                     PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLee.rl.kekkdaqkigdvfl 78 
                                    vi+El++tEr++vr+L+vl +v+++++++ + ils++e+++iFsn+e+il+lh  + e+++  r+ +e++ +++ig+ +l
  gi|145046273|ref|NP_081420.2| 792 VINELFYTERAHVRTLKVLDQVFYQRVSR-EGILSPSELRKIFSNLEDILQLHVGLNEQMKAvRKrNETSVIDHIGEDLL 870
                                    79***************************.9*******************************633377799*****9996 PP

                                    HHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHHHHHHC CS
                     PF00621.15  79 klee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLLkellk 152
                                     + +      ++++  +++sn++ al+++k+ +kk+s+f++f++ ae++p +++l+L++++ + +qRl++YplLL++++k
  gi|145046273|ref|NP_081420.2| 871 IWFSgpgeekLKHAAATFCSNQPFALEMIKSRQKKDSRFHTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAK 950
                                    63333666668889****************************************************************** PP

                                    TS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                     PF00621.15 153 atpeshpdyealekaleaikevasqiNe 180
                                    +t+   p++e+++ka + ++++++++N+
  gi|145046273|ref|NP_081420.2| 951 YTE-WPPEREKVKKAADHCRQILNYVNQ 977
                                    **7.66799******************7 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.5   3.4e-15   8.5e-12       4      81 .]      75     145 ..      73     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.4e-15
                                    EEESTTSBTSEEEEEETTSSSSSEEEEEESTTSHHHHHTCSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEEE CS
                     PF00595.19   4 lekekrgglGfslkggsdkrdkgifvsevvpggaaeadglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLtil 81 
                                    ++k   +g+G++++g  d   +++fv++v ++gaa ++g++ GD+I++vNg+ v+  +h+e+v++i++ +  v+Lt++
  gi|145046273|ref|NP_081420.2|  75 IQK-DDNGFGLTVSG--D---NPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIRSGS-YVALTVQ 145
                                    555.77899999998..4...48********************************************996.8888886 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   1.4e-09   3.4e-06       4      68 ..      83     143 ..      80     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.4e-09
                      PF13180.1   4 GvsvsqlentrgvlvvsVkessPaakaglkpGDiilkvdgkkvksltdlkslllkkkpGdtvklt 68 
                                    G +vs +++   v v+sVke++ a +ag+++GD i+kv+g+ v+ +++l+ ++   + G+ v lt
  gi|145046273|ref|NP_081420.2|  83 GLTVSGDNP---VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLE-VVKLIRSGSYVALT 143
                                    777888887...9******************************6666554.33344555555555 PP

>> PF03938.9  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.1   0.00015      0.37      49     108 ..     203     262 ..     195     275 .. 0.92
   2 ?    1.8   2.2     0.081     2e+02      36     107 ..     476     545 ..     466     562 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                      PF03938.9  49 qqelqakkkelqkeqknlqseraqlsaeeekakeeelqakeqelqayaqqlqaelqaeqq 108
                                    +q+++  +k lqkeq++lq  ++  +  + ++  +e+q++++ + + ++ql +++  +q+
  gi|145046273|ref|NP_081420.2| 203 NQKVEILRKMLQKEQERLQLLQEDYNRTATQRLLKEIQEAKKHIPQLQEQLSKATGSAQD 262
                                    68899999********************************************99887775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.081
                      PF03938.9  36 elqaklqeeakekqqelqakkkelqkeqknlqseraqlsaeeekakeeelqakeqelqayaqqlqaelqaeq 107
                                    e+q++l+ + ++    l++ + el+k+ ++ +++r +l +e  +a +e++  k +e+   aq++++e + + 
  gi|145046273|ref|NP_081420.2| 476 EVQRHLEDFRQKRSMGLTLAESELTKLDAERDKDRGTLEKE--RACAEQIVTKIEEVLMTAQAVEEERSSTM 545
                                    68999999999999999999999999988888888877777..56677788888888888887776655554 PP

>> PF13476.1  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00039      0.96     154     196 ..     203     255 ..     151     258 .. 0.79
   2 ?   -1.2   3.7      0.85   2.1e+03     135     195 ..     861     996 ..     722    1015 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00039
                      PF13476.1 154 kkrleelekeleeledekellek..........llqeeekekeleeleeelee 196
                                     +++e l+k l+++++  +ll++          l++ +e +k++ +l+e+l++
  gi|145046273|ref|NP_081420.2| 203 NQKVEILRKMLQKEQERLQLLQEdynrtatqrlLKEIQEAKKHIPQLQEQLSK 255
                                    35778888888888888888888776666655446777888899999998876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.85
                      PF13476.1 135 liaylgqer.........................ekekfklkekkk.................................. 155
                                    +i+ +g++                           +e++k ++kk+                                  
  gi|145046273|ref|NP_081420.2| 861 VIDHIGEDLliwfsgpgeeklkhaaatfcsnqpfALEMIKSRQKKDsrfhtfvqdaesnplcrrlqlkdiiptqmqrltk 940
                                    33333333344444444444444444444333322222222222225555555555555555555555555554444444 PP

                      PF13476.1 156 ................rleelekeleeledekellekllqeeekekeleeleeele 195
                                                    + e+++k+ +   ++ +  ++  +e e++++le+++ +l+
  gi|145046273|ref|NP_081420.2| 941 ypllldniakytewppEREKVKKAADHCRQILNYVNQAVREAENKQRLEDYQRRLD 996
                                    44444433334444443333333333333333333334444455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1544 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       954  (0.0643247); expected 296.6 (0.02)
Passed bias filter:                      454  (0.0306116); expected 296.6 (0.02)
Passed Vit filter:                        48  (0.00323646); expected 14.8 (0.001)
Passed Fwd filter:                         9  (0.000606837); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.84u 0.78s 00:00:03.62 Elapsed: 00:00:00.70
# Mc/sec: 5757.65
//
Query:       gi|31543588|ref|NP_033088.2|  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-37  125.7   4.6    1.4e-36  125.1   4.6    1.3  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   4.6   9.4e-41   1.4e-36       1     118 []      62     177 ..      62     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 9.4e-41
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   sle+l++++ g+ +F+ Fl+se+seen++Fw+ +ee+kk k+ ++ls kak+Iyn++++ +++ke+n+d+ +ree+++n+ 
  gi|31543588|ref|NP_033088.2|  62 SLENLIHHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNML 142
                                   6899***************************************************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +  p+ ++f+eaq+++f+l+ekdsy++Flks +yl+l
  gi|31543588|ref|NP_033088.2| 143 Q--PTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 177
                                   9..*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       996  (0.0671566); expected 296.6 (0.02)
Passed bias filter:                      406  (0.0273751); expected 296.6 (0.02)
Passed Vit filter:                        26  (0.00175308); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.72s 00:00:01.37 Elapsed: 00:00:00.67
# Mc/sec: 798.68
//
Query:       gi|254553475|ref|NP_001156984.1|  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-44  149.2   0.1    5.7e-24   83.6   0.0    2.5  2  PF02196.10  Raf-like Ras-binding domain
    3.2e-28   98.2   3.6    4.9e-28   97.6   3.6    1.3  1  PF00615.14  Regulator of G protein signaling domain
    9.1e-10   37.5   0.2    9.1e-10   37.5   0.2    2.0  2  PF02188.12  GoLoco motif
     0.0037   17.1   0.0       0.11   12.3   0.0    2.6  2  PF11470.3   GLUT4 regulating protein TUG


Domain annotation for each model (and alignments):
>> PF02196.10  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.5e-27   5.7e-24       1      71 []     304     374 ..     304     374 .. 0.98
   2 !   63.3   0.0   3.4e-21   1.3e-17       2      71 .]     377     446 ..     376     446 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.5e-27
                                       -EEEEEETTTEEEEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEEEEEEE-TTSBGGGGTTSEEEEEE- CS
                        PF02196.10   1 ktirvhLPnnqrsvvevrpGmtvrDaLskalkrrgLnpsacaVrlvgekkpldletdissLpgeelivell 71 
                                       k+++vhLP+++++vv+v++G++++++Ls++++r+g+n +a++++lvg++kpl+l++d+s+L+ ++l++e++
  gi|254553475|ref|NP_001156984.1| 304 KHCCVHLPDGTSCVVAVKSGFSIKEILSGLCERHGINGAAVDLFLVGGDKPLVLHQDSSILATRDLRLEKR 374
                                       79*******************************************************************86 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 3.4e-21
                                       EEEEEETTTEEEEEE--TT-BHHHHHHHHHHTTT--GGGEEEEEEEEEEEE-TTSBGGGGTTSEEEEEE- CS
                        PF02196.10   2 tirvhLPnnqrsvvevrpGmtvrDaLskalkrrgLnpsacaVrlvgekkpldletdissLpgeelivell 71 
                                       ++++++P+n++++++++p+++v+++L+++++++gL++  + Vrl+gek+pldl+++issL+g+++i+e++
  gi|254553475|ref|NP_001156984.1| 377 FRLDLVPINRSVGLKAKPTKPVTEVLRPVVAKYGLDLGSLLVRLSGEKEPLDLGAPISSLDGQRVILEER 446
                                       56789***************************************************************86 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   3.6   1.3e-31   4.9e-28       1     118 []      57     173 ..      57     173 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.3e-31
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka..keqeelskkakeIynkylapsspkelnidkklree 75 
                                       s+e+ll+d+ g+++F +Fl++efseen+ Fw+a+e f +   ++++els +a+eI++k+l ++++  +nid+++   
  gi|254553475|ref|NP_001156984.1|  57 SFERLLQDPVGVRYFSDFLRKEFSEENILFWQACECFSHVpaHDKKELSYRAREIFSKFLCSKATTPVNIDSQAQ-- 131
                                       799************************************98899999*************************986.. PP

                                       HHHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  76 leknlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       l++ + +  p++++f+e q ++f+l++ dsy++Flks+ly+++
  gi|254553475|ref|NP_001156984.1| 132 LADDILN-APHPDMFKEQQLQIFNLMKFDSYTRFLKSQLYQEC 173
                                       5665555.5*******************************985 PP

>> PF02188.12  GoLoco motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4      0.89   3.3e+03      10      15 ..      39      44 ..      39      46 .. 0.63
   2 !   37.5   0.2   2.5e-13   9.1e-10       2      23 .]     530     551 ..     529     551 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.89
                        PF02188.12 10 raQssR 15
                                      ++Qs+R
  gi|254553475|ref|NP_001156984.1| 39 SVQSCR 44
                                      58*555 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 2.5e-13
                        PF02188.12   2 edFfdLlaraQssRlDDQRcsl 23 
                                       e+Ff+L+++aQs+R DDQR++l
  gi|254553475|ref|NP_001156984.1| 530 EEFFELISKAQSNRADDQRGLL 551
                                       9*******************97 PP

>> PF11470.3  GLUT4 regulating protein TUG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.064   2.4e+02      10      46 ..     317     355 ..     309     361 .. 0.75
   2 !   12.3   0.0   3.1e-05      0.11       6      52 ..     385     433 ..     381     436 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.064
                         PF11470.3  10 kvkvtpsttltqvleeackkfkldsn..eytLkhnrkpl 46 
                                        v v  + +++++l+  c+++++++   +  L  ++kpl
  gi|254553475|ref|NP_001156984.1| 317 VVAVKSGFSIKEILSGLCERHGINGAavDLFLVGGDKPL 355
                                       577888889***************994444455555665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.1e-05
                         PF11470.3   6 frrvkvkvtpsttltqvleeackkfkldsn..eytLkhnrkpldlslpf 52 
                                       +r+v +k  p++++t+vl  ++ k++ld      +L+  ++pldl  p+
  gi|254553475|ref|NP_001156984.1| 385 NRSVGLKAKPTKPVTEVLRPVVAKYGLDLGslLVRLSGEKEPLDLGAPI 433
                                       689999**********************998999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       467  (0.0314881); expected 296.6 (0.02)
Passed bias filter:                      264  (0.0178006); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.47s 00:00:01.66 Elapsed: 00:00:00.47
# Mc/sec: 4015.47
//
Query:       gi|342672040|ref|NP_001230152.1|  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   49.4   2.4    2.8e-09   37.0   1.0    4.5  4  PF00615.14  Regulator of G protein signaling domain
     0.0036   17.2   0.1      0.014   15.3   0.0    2.0  1  PF15171.1   Neuropeptide secretory protein family, NPQ, spexi


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.054     4e+02      17      47 ..      93     124 ..      84     196 .. 0.77
   2 !    5.8   0.0    0.0018        13      13     111 ..     382     488 ..     373     493 .. 0.77
   3 !   37.0   1.0   3.8e-13   2.8e-09       2     110 ..     645     752 ..     644     754 .. 0.92
   4 ?   -0.2   0.0      0.13   9.6e+02      46      99 ..     912     967 ..     874     978 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.054
                                       HHHHH.TTCTHHHHHHHHHHHHHTSSHHHHHH CS
                        PF00615.14  17 eFles.efseenleFwlaveefkkakeqeels 47 
                                       +Fl+s e  ee l+Fw+  e++ + +e ++  
  gi|342672040|ref|NP_001230152.1|  93 SFLKSpEGGEELLDFWILAEKILSIDETDKYL 124
                                       68887244559*****9999988886655554 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0018
                                       HHHHHHHHHTTCT...HHHHHHHHHHHHHTS......SHHHHHHHH.HHHHHHHHTSTTSTTSSTS-HHHHHHHHHH CS
                        PF00615.14  13 slFreFlesefse...enleFwlaveefkka......keqeelskk.akeIynkylapsspkelnidkklreelekn 79 
                                       s Fr  l++ + +   + l++w++ ++f +       + +  +  +  ++I + yl+++    l ++ ++ + l+k 
  gi|342672040|ref|NP_001230152.1| 382 SPFRFHLKKMNLKvevQLLDLWQDLQHFISVlmnnrqNGNALFRHMlGNRICELYLNEQIGPPLPLKPQTLQGLKKL 458
                                       5567777776655566999*********99998887533333333369****************************9 PP

                                       HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHT CS
                        PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlk 111
                                       l +  +      +aq+e+++ l+   y +Fl 
  gi|342672040|ref|NP_001230152.1| 459 LPS-GEVNPWIPKAQREICKVLS-PWYDEFLM 488
                                       998.7888889999999999986.35666665 PP

  == domain 3  score: 37.0 bits;  conditional E-value: 3.8e-13
                                       HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTST.TSS.TS-HHHHHHH CS
                        PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapssp.kel.nidkklreel 76 
                                       l+++l +++ +++F+eFl+ ++se  l+F++av+++   ++++  ++  ++I ++yl+ + p +e+ + d    +e+
  gi|342672040|ref|NP_001230152.1| 645 LTEVLLNNAHLEYFKEFLKDRKSESPLQFLIAVQKIMMETNEKTYKTSLENITKTYLHGKVPaEEIlQCDAPFIKEI 721
                                       778899999******************************888888888************9988889********** PP

                                       HHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHH CS
                        PF00615.14  77 eknlekaqpsrklfeeaqeevfellekdsypkFl 110
                                       ++  +    + +++ ++q +v++  e++ +++++
  gi|342672040|ref|NP_001230152.1| 722 ANVRH---ITTTTLLMLQGYVMKSVEEKWFKEYQ 752
                                       99644...6899999***************9997 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.13
                                       HHHHHHHHHHHHTSTTSTTSS..TS-HHHHHHHHHHHCS..TTTTTTHHHHHHHHH CS
                        PF00615.14  46 lskkakeIynkylapsspkel..nidkklreeleknlekaqpsrklfeeaqeevfe 99 
                                       + +k + I++ yl ++ p +l  ni+++ ++ + + +++ + +r++f+ a  ++f 
  gi|342672040|ref|NP_001230152.1| 912 MRSKLNIIVKLYLVSDLPPKLkvNISESQKDIIISAITEGHLDRTIFHGAIMSIFP 967
                                       556688899999999999655569****9999999999999999999999988885 PP

>> PF15171.1  Neuropeptide secretory protein family, NPQ, spexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-06     0.014       6      79 ..     784     857 ..     780     866 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-06
                         PF15171.1   6 ferrnwtPqamlylkGaqGrrflsdqsrrkdladrpplerrspnselltlpeaaalllaslekaqeaeeenldk 79 
                                       +++r w     +     + rrf++d  +r++lad   le  +++ +  t p ++a        a++ae+en d 
  gi|342672040|ref|NP_001230152.1| 784 SQKRGWIKMIAFIKSFCNYRRFIADANNRQELADFIYLEMFNNKENFSTSPATSARHTPVNLSARNAEQENGDT 857
                                       6899998655444445789**********************999999999988888887777888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       669  (0.0451082); expected 296.6 (0.02)
Passed bias filter:                      361  (0.0243409); expected 296.6 (0.02)
Passed Vit filter:                        23  (0.00155081); expected 14.8 (0.001)
Passed Fwd filter:                         2  (0.000134853); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.73u 0.64s 00:00:02.37 Elapsed: 00:00:00.57
# Mc/sec: 4829.11
//
Query:       gi|163310714|ref|NP_001106182.1|  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-63  214.9   0.0    1.3e-63  214.5   0.0    1.1  1  PF00069.20  Protein kinase domain
      8e-36  123.4   0.0    1.1e-35  123.0   0.0    1.1  1  PF07714.12  Protein tyrosine kinase
    5.2e-19   68.4   0.0    1.8e-18   66.7   0.0    1.9  1  PF00615.14  Regulator of G protein signaling domain
    4.6e-05   22.5   0.0    7.5e-05   21.8   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.5   0.0   3.6e-67   1.3e-63       2     260 .]     187     448 ..     186     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 214.5 bits;  conditional E-value: 3.6e-67
                                       EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEE CS
                        PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvl 77 
                                       ++ + lG+G+fG+V+ ++ + tgk++A+K+l+k++ k++k ++ ++ E +il+k+n+ ++v+l  ++e+kd l+lvl
  gi|163310714|ref|NP_001106182.1| 187 RQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALnEKQILEKVNSRFVVSLAYAYETKDALCLVL 263
                                       66799******************************999987765546****************************** PP

                                       E--TTEBHHHHHH..HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEES CS
                        PF00069.20  78 eyveggdlfdllk..kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakklekss 152
                                        +++ggdl  ++    +  + e  + ++a +i++gle lH+++i++rDLKpeNiLld++g+++i+D+Gla +   ++
  gi|163310714|ref|NP_001106182.1| 264 TLMNGGDLKFHIYhmGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVH-VPEG 339
                                       *********99996666778**************************************************97.9999 PP

                                       S-STSS-S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHH CS
                        PF00069.20 153 eklttlvgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepksssk 229
                                       ++ + +vgt  YmAPEv++ ++ yt + D+W+lG++lye++ g+ pf++++++ ++e +++  k+  ee     ++ 
  gi|163310714|ref|NP_001106182.1| 340 QTIKGRVGTVGYMAPEVVR-NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEY-T--DRF 412
                                       9******************.******************************88888888877777433333.3..344 PP

                                       HHHHHHHHHHHT-SSGGGSTT.....HHHHHCSGGH CS
                        PF00069.20 230 seelkdlikkllekdpakRlt.....aeeilkhpwl 260
                                       s+++++l+++ll kdpa+Rl      a+e+++hp++
  gi|163310714|ref|NP_001106182.1| 413 SSQARSLCSQLLSKDPAERLGcrgggAREVKEHPLF 448
                                       59******************9999999999999976 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   2.9e-39   1.1e-35       4     249 ..     189     431 ..     186     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 2.9e-39
                                       EEEEEEESSEEEEEEEEETTTTSTEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEE CS
                        PF07714.12   4 gkklGeGafGeVvegtlkgekekkevkVavKtl.keeaeeee.keefleeakimkklkhenivkllgvctkeeplli 78 
                                        + lG+G fGeV+ ++++     +    a K+l k++ ++++ +++ l+e +i++k++ + +v+l  ++ +++ l++
  gi|163310714|ref|NP_001106182.1| 189 YRVLGKGGFGEVCACQVR----ATGKMYACKKLeKKRIKKRKgEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261
                                       689***************....777778999994334444442566788**************************** PP

                                       EEE--TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTT CS
                        PF07714.12  79 vteyvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiek 155
                                       v+ +++gGdL+ ++ +  +  +   + + +a++i+ G+e L+++++v rdL   N+Ll+++++++isD GLa ++  
  gi|163310714|ref|NP_001106182.1| 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHV-- 336
                                       *****************9*********************************************************.. PP

                                       TSEEEETTTSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GTTTTSHHHH...HHHHHHTTEES-BBTT CS
                        PF07714.12 156 ddyykkkekaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee...vleklkegkrlekpen 229
                                         + ++ +++   v +mapE+++++++t   D W+ G ll+E++  g+sp+++ +++     +e+l ++   e  + 
  gi|163310714|ref|NP_001106182.1| 337 -PEGQTIKGRVGTVGYMAPEVVRNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIkreEVERLVKEVAEEYTDR 411
                                       .444555677899*******************************9.99**887755430113344444444555566 PP

                                       SBHHHHHHHHHHT-SSGGGS CS
                        PF07714.12 230 cpeelyelmkqCweeepekR 249
                                        +++  +l +q ++++p++R
  gi|163310714|ref|NP_001106182.1| 412 FSSQARSLCSQLLSKDPAER 431
                                       77777777777777777777 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   4.9e-22   1.8e-18       2     118 .]      53     170 ..      52     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 4.9e-22
                                       HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHH CS
                        PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklree 75 
                                       ++sl+e+qp gr lFreF+ ++ +  ++ +F++ v e++ + ++e++++  +++++++l++  p  + +++++l+++
  gi|163310714|ref|NP_001106182.1|  53 YHSLCERQPiGRLLFREFCATRPELtRCTAFLDGVSEYEVT-PDEKRKACGRRLMQNFLSHTGPDLIpEVPRQLVSN 128
                                       689******************55559***************.*********************************** PP

                                       HHHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  76 leknlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       ++++le+  p+++lf+e+ + ++e+l++ ++ ++l+s +++r+
  gi|163310714|ref|NP_001106182.1| 129 CAQRLEQ-GPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRF 170
                                       *******.********************************986 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     2e-08   7.5e-05     161     272 ..     301     406 ..     298     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2e-08
                                       HHHHTTEE-S--STTSEEE-TT--EEE--GCC-EE..TTEEE-.----TTTS-HHHHHC-.XXXX--EEE-HHHHHH CS
                         PF14531.1 161 nLqarglvhgkispdnflldekggvfLggftaLvr..agkkvvvsevekalaPpellaekggytsnttkmthkldaW 235
                                        L+ + +v  +++p+n+lld +g + + + +  v   +g+  +++   +++  pe++++         ++t++ d W
  gi|163310714|ref|NP_001106182.1| 301 DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHvpEGQTIKGRVGTVGYMAPEVVRNE--------RYTFSPDWW 369
                                       69999************************9655541178888877777999888888775........79******* PP

                                       HHHHHHHHHHHSS---GGGGGG-SSHHHHTT-----H CS
                         PF14531.1 236 qlGlviysiwclrlPftllaeeaseewkfklckkvpe 272
                                       +lG  +y +   + Pf + ++++++e   +l+k+v e
  gi|163310714|ref|NP_001106182.1| 370 ALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAE 406
                                       ***********************99954444556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       550  (0.0370845); expected 296.6 (0.02)
Passed bias filter:                      438  (0.0295327); expected 296.6 (0.02)
Passed Vit filter:                        42  (0.00283191); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.29u 0.76s 00:00:02.04 Elapsed: 00:00:00.63
# Mc/sec: 2386.59
//
Query:       gi|12738845|ref|NP_075019.1|  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-37  127.5   3.9    4.3e-37  126.8   3.9    1.4  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   3.9   2.9e-41   4.3e-37       1     117 [.      86     200 ..      86     201 .. 0.99

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 2.9e-41
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   s+++ll++ +g+ +F+ Fl++efseen+eFw a+e+fkk+ke ++++ kak+Iy+k++++++pke+nid +++e ++k++ 
  gi|12738845|ref|NP_075019.1|  86 SFDKLLSHRDGVDAFTRFLKTEFSEENIEFWVACEDFKKCKEPQQIILKAKAIYEKFIQNDAPKEVNIDFHTKEVIAKSIA 166
                                   79******************************************************************************* PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylr 117
                                   +  p+ + f+ aq +v++l+e dsy++Flkse yl 
  gi|12738845|ref|NP_075019.1| 167 Q--PTLHSFDTAQSRVYQLMEHDSYKRFLKSETYLH 200
                                   9..*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       563  (0.037961); expected 296.6 (0.02)
Passed bias filter:                      341  (0.0229924); expected 296.6 (0.02)
Passed Vit filter:                        17  (0.00114625); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.65s 00:00:01.31 Elapsed: 00:00:00.64
# Mc/sec: 958.48
//
Query:       gi|110625669|ref|NP_067349.2|  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-35  120.2   0.6    6.2e-35  119.8   0.6    1.1  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.6   4.2e-39   6.2e-35       1     118 []     113     228 ..     113     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 4.2e-39
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    s+++l+ +++gr++FreFl++efseen+ Fw+a+ee+k+ ++++ + +ka+ Iy+ y++  spke+ +d+++re +++n+
  gi|110625669|ref|NP_067349.2| 113 SFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNM 192
                                    799***************************************************************************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                     +  ps+++f++aq ++++l+++dsyp+F++s +y++l
  gi|110625669|ref|NP_067349.2| 193 VD--PSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDL 228
                                    **..*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       687  (0.0463219); expected 296.6 (0.02)
Passed bias filter:                      309  (0.0208347); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.59s 00:00:01.26 Elapsed: 00:00:00.62
# Mc/sec: 1006.24
//
Query:       gi|260099637|ref|NP_001159406.1|  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-33  114.5   0.0      6e-33  113.4   0.0    1.6  1  PF00615.14  Regulator of G protein signaling domain
    4.3e-12   45.5   0.0    2.6e-11   43.0   0.0    2.4  2  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
    3.6e-11   42.6   0.0    1.1e-10   41.1   0.0    1.9  1  PF00631.17  GGL domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.2e-36     6e-33       1     118 []     299     413 ..     299     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.2e-36
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreele 77 
                                       ++++l+ d++gr+ F+ Fl++efs enl Fw+a+e++k   +q+++++ka+eIy+ +lap++ + +nid k+++ + 
  gi|260099637|ref|NP_001159406.1| 299 NFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYG-DQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITV 374
                                       5899************************************.************************************ PP

                                       HHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  78 knlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       k l++  p+r ++++aq++++ l++kdsy ++lks++y+++
  gi|260099637|ref|NP_001159406.1| 375 KGLRH--PHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 413
                                       *****..*******************************986 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   5.3e-15   2.6e-11       1      74 []      33     103 ..      33     103 .. 0.95
   2 ?   -1.5   0.0      0.42   2.1e+03      48      73 ..     130     154 ..     113     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 5.3e-15
                                       SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH--SSSSS-EEX CS
                        PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                                       gv+m ++r+  +++++++tG ++ +W+    ++  ++  eA +lg+ ++++g+i+++++ ++  ++ ++++Y+f
  gi|260099637|ref|NP_001159406.1|  33 GVRMHNQRVLVTSVPHAMTGGDVLQWIT---QRLWISNLEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRF 103
                                       89**************************...678***************************8877777*****9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.42
                                       HHHCTTCEESSSSHHH--SSSSS-EE CS
                        PF00610.16  48 LldqgliehvekrhsgFrdskqafYq 73 
                                       + ++g++e  ek++  F+++ +  Y 
  gi|260099637|ref|NP_001159406.1| 130 IKKKGILEEYEKENYDFLNK-KINYK 154
                                       44789999999999669998.77776 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.1e-14   1.1e-10       1      68 []     216     280 ..     216     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.1e-14
                        PF00631.17   1 kqlklklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccwil 68 
                                       kq++ ++++ei++++++L+r+++k S +   +++Y e  s +D +++++  p+    Npwi++++++w+l
  gi|260099637|ref|NP_001159406.1| 216 KQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEqfSSNDAIMSGC-LPS----NPWITDDTQFWDL 280
                                       688999*******************************************.999....***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       609  (0.0410626); expected 296.6 (0.02)
Passed bias filter:                      354  (0.0238689); expected 296.6 (0.02)
Passed Vit filter:                        22  (0.00148338); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.67s 00:00:01.69 Elapsed: 00:00:00.54
# Mc/sec: 2339.63
//
Query:       gi|194306549|ref|NP_001123623.1|  [L=976]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-69  233.2   0.2    1.5e-69  233.2   0.2    2.1  2  PF09128.6   Regulator of G protein signalling-like domain
      3e-39  134.7   0.0    6.4e-39  133.6   0.0    1.6  1  PF00621.15  RhoGEF domain
  ------ inclusion threshold ------
       0.11   12.4   1.1        1.1    9.2   0.2    2.7  2  PF15405.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.2   3.1e-73   1.5e-69       1     188 []      40     230 ..      40     230 .. 0.99
   2 ?   -0.8   0.4      0.18   8.8e+02      83     138 ..     639     693 ..     564     710 .. 0.73

  Alignments for each domain:
  == domain 1  score: 233.2 bits;  conditional E-value: 3.1e-73
                                       HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHH CS
                         PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseel 77 
                                       q+s+Fqsle++K+rPahL+++l++v++qf+P+pll++L+ad+ +s ++Kea++++l+++++Fl++ta+l+v+v+ ++
  gi|194306549|ref|NP_001123623.1|  40 QNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSV 116
                                       79*************************************************************************** PP

                                       HHHH...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH....HHHHHHH CS
                         PF09128.6  78 aadierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra....kErrvae 150
                                       a++++r+r++l++e+++rr++qe+ q++++++++qledfr+Kr mG++ +e+el++l+ +++kdr     +Er+vae
  gi|194306549|ref|NP_001123623.1| 117 AFELDRTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGnyeaRERHVAE 193
                                       *****************************************************************9999******** PP

                                       HHHHHHHHHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                         PF09128.6 151 kllskleeilstsskteeeksstlqyailtylkhlgvk 188
                                       +lls+lee+++t+s+ +eeks+++++ai++y++hlgv+
  gi|194306549|ref|NP_001123623.1| 194 RLLSHLEETQHTIST-DEEKSAAVVTAISLYMRHLGVR 230
                                       **********99998.9*******************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
                                       ..HHHHHTT---HHHHHHHHHHHHHHHHHH..HHHHHHHHHTT-GGGGTTTGGGG..- CS
                         PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkq..ledfrqKrsmGLgllegeldkldqel 138
                                       +r + + ++e +r++l +++q+v  ++++   l+d++  r + L++l ++ d + +e 
  gi|194306549|ref|NP_001123623.1| 639 ERGKVELAAECCREILHHVNQAVR-DMEDLlrLKDYQ--RRLDLTHLRQSSDPMLSEF 693
                                       444455677888999888887665.445440155554..6788888888877665544 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.3e-42   6.4e-39       1     180 []     475     659 ..     475     659 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.3e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTT.SS----HHH CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkek.kdaqkigdv 76 
                                       vi El+ tE ++vr L+vl++ +++p+     +++ +e+++iF+ ++e++++h+ fl++L +r +e+   +++igdv
  gi|194306549|ref|NP_001123623.1| 475 VISELLVTEAAHVRMLRVLHDLFYQPMAD-GGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESgYLIEEIGDV 550
                                       799*************************9.8*******************************99555599******* PP

                                       HHHHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  77 flklee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       +l++ +      f+k+ s ++s+++ al+ lk +++k+++f +f++eae++p++++l+L++++ + +qRl++YplLL
  gi|194306549|ref|NP_001123623.1| 551 LLARFDgaegswFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL 627
                                       *99666699******************************************************************** PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       + + ++t+es+ ++ ++e a e+++e+++++N+
  gi|194306549|ref|NP_001123623.1| 628 QSIGQNTEEST-ERGKVELAAECCREILHHVNQ 659
                                       *******9887.9*******************7 PP

>> PF15405.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00021       1.1       1      34 [.     703     735 ..     703     749 .. 0.89
   2 ?    0.5   0.0       0.1   5.1e+02     111     133 ..     790     812 ..     757     814 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
                         PF15405.1   1 lifkgqlkkkegsksesadiqvyLfDhalLlvki 34 
                                       l+++g+l  + ++++   +++v L+D +lLl++ 
  gi|194306549|ref|NP_001123623.1| 703 LVHEGPLTWRVTKDKAI-EVHVLLLDDLLLLLQR 735
                                       79*********999665.************9875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
                         PF15405.1 111 gyeltLyastlaarqkwlekIek 133
                                        + + L a+t ++r++w++ I++
  gi|194306549|ref|NP_001123623.1| 790 AQIYELVAQTSSERKNWCNLITE 812
                                       3347899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       466  (0.0314207); expected 296.6 (0.02)
Passed bias filter:                      356  (0.0240038); expected 296.6 (0.02)
Passed Vit filter:                        25  (0.00168566); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.60u 0.67s 00:00:02.27 Elapsed: 00:00:00.56
# Mc/sec: 4469.62
//
Query:       gi|149234326|ref|XP_894544.3|  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-40  137.2   1.8    2.8e-40  137.0   1.8    1.0  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   1.8   1.9e-44   2.8e-40       2     118 .]      22     136 ..      21     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.9e-44
                                    HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                     PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                    ++sll++q+g+ +Fr+Fl+se+seen+eFwla+e+fkk++++e++ +kak Iy++++  ++pke+nid ++r+ +++n+ 
  gi|149234326|ref|XP_894544.3|  22 MDSLLANQAGLDAFRTFLKSEYSEENVEFWLACEDFKKTECREKIATKAKTIYSEFIVADAPKEINIDFSTRDLISRNIA 101
                                    799***************************************************************************** PP

                                    S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    +  p++k+f+eaq+ +++l++kds+p+Flkse+y++l
  gi|149234326|ref|XP_894544.3| 102 E--PTPKCFDEAQKLIYSLMAKDSFPRFLKSEIYKKL 136
                                    9..*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       491  (0.0331063); expected 296.6 (0.02)
Passed bias filter:                      370  (0.0249477); expected 296.6 (0.02)
Passed Vit filter:                        20  (0.00134853); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.62s 00:00:01.17 Elapsed: 00:00:00.61
# Mc/sec: 650.44
//
Query:       gi|194306547|ref|NP_001123622.1|  [L=979]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-69  233.2   0.2    1.6e-69  233.2   0.2    2.1  2  PF09128.6   Regulator of G protein signalling-like domain
    3.1e-39  134.7   0.0    6.4e-39  133.6   0.0    1.6  1  PF00621.15  RhoGEF domain
  ------ inclusion threshold ------
       0.11   12.4   1.1        1.1    9.2   0.2    2.7  2  PF15405.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.2   3.1e-73   1.6e-69       1     188 []      40     230 ..      40     230 .. 0.99
   2 ?   -0.8   0.4      0.18   8.9e+02      83     138 ..     642     696 ..     567     713 .. 0.73

  Alignments for each domain:
  == domain 1  score: 233.2 bits;  conditional E-value: 3.1e-73
                                       HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHH CS
                         PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseel 77 
                                       q+s+Fqsle++K+rPahL+++l++v++qf+P+pll++L+ad+ +s ++Kea++++l+++++Fl++ta+l+v+v+ ++
  gi|194306547|ref|NP_001123622.1|  40 QNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSV 116
                                       79*************************************************************************** PP

                                       HHHH...HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH....HHHHHHH CS
                         PF09128.6  78 aadierrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra....kErrvae 150
                                       a++++r+r++l++e+++rr++qe+ q++++++++qledfr+Kr mG++ +e+el++l+ +++kdr     +Er+vae
  gi|194306547|ref|NP_001123622.1| 117 AFELDRTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGnyeaRERHVAE 193
                                       *****************************************************************9999******** PP

                                       HHHHHHHHHH...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                         PF09128.6 151 kllskleeilstsskteeeksstlqyailtylkhlgvk 188
                                       +lls+lee+++t+s+ +eeks+++++ai++y++hlgv+
  gi|194306547|ref|NP_001123622.1| 194 RLLSHLEETQHTIST-DEEKSAAVVTAISLYMRHLGVR 230
                                       **********99998.9*******************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
                                       ..HHHHHTT---HHHHHHHHHHHHHHHHHH..HHHHHHHHHTT-GGGGTTTGGGG..- CS
                         PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkq..ledfrqKrsmGLgllegeldkldqel 138
                                       +r + + ++e +r++l +++q+v  ++++   l+d++  r + L++l ++ d + +e 
  gi|194306547|ref|NP_001123622.1| 642 ERGKVELAAECCREILHHVNQAVR-DMEDLlrLKDYQ--RRLDLTHLRQSSDPMLSEF 696
                                       444455677888999888887665.445440155554..6788888888877665544 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.3e-42   6.4e-39       1     180 []     478     662 ..     478     662 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.3e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTT.SS----HHH CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkek.kdaqkigdv 76 
                                       vi El+ tE ++vr L+vl++ +++p+     +++ +e+++iF+ ++e++++h+ fl++L +r +e+   +++igdv
  gi|194306547|ref|NP_001123622.1| 478 VISELLVTEAAHVRMLRVLHDLFYQPMAD-GGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESgYLIEEIGDV 553
                                       799*************************9.8*******************************99555599******* PP

                                       HHHHHS......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  77 flklee......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       +l++ +      f+k+ s ++s+++ al+ lk +++k+++f +f++eae++p++++l+L++++ + +qRl++YplLL
  gi|194306547|ref|NP_001123622.1| 554 LLARFDgaegswFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLL 630
                                       *99666699******************************************************************** PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       + + ++t+es+ ++ ++e a e+++e+++++N+
  gi|194306547|ref|NP_001123622.1| 631 QSIGQNTEEST-ERGKVELAAECCREILHHVNQ 662
                                       *******9887.9*******************7 PP

>> PF15405.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00021       1.1       1      34 [.     706     738 ..     706     752 .. 0.89
   2 ?    0.5   0.0       0.1   5.1e+02     111     133 ..     793     815 ..     760     817 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
                         PF15405.1   1 lifkgqlkkkegsksesadiqvyLfDhalLlvki 34 
                                       l+++g+l  + ++++   +++v L+D +lLl++ 
  gi|194306547|ref|NP_001123622.1| 706 LVHEGPLTWRVTKDKAI-EVHVLLLDDLLLLLQR 738
                                       79*********999665.************9875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
                         PF15405.1 111 gyeltLyastlaarqkwlekIek 133
                                        + + L a+t ++r++w++ I++
  gi|194306547|ref|NP_001123622.1| 793 AQIYELVAQTSSERKNWCNLITE 815
                                       3347899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       471  (0.0317578); expected 296.6 (0.02)
Passed bias filter:                      358  (0.0241386); expected 296.6 (0.02)
Passed Vit filter:                        28  (0.00188794); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.62u 0.69s 00:00:02.31 Elapsed: 00:00:00.61
# Mc/sec: 4189.37
//
Query:       gi|6678668|ref|NP_032514.1|  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-69  233.3   0.2    1.4e-69  233.3   0.2    2.1  2  PF09128.6   Regulator of G protein signalling-like domain
    2.7e-39  134.9   0.0    5.8e-39  133.8   0.0    1.6  1  PF00621.15  RhoGEF domain
  ------ inclusion threshold ------
        0.1   12.5   1.2       0.98    9.3   0.2    2.7  2  PF15405.1   Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PF09128.6  Regulator of G protein signalling-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.2   2.8e-73   1.4e-69       1     188 []      40     230 ..      40     230 .. 0.99
   2 ?   -0.6   0.3      0.16   7.9e+02      83     138 ..     582     636 ..     506     653 .. 0.73

  Alignments for each domain:
  == domain 1  score: 233.3 bits;  conditional E-value: 2.8e-73
                                  HHHHHH-HHHHHH-HHHHHHHHHHHHHHS--HHHHHHHHHHHHTTS-TTHHHHHHHHHHHHHTSTT-TT-----HHHHHHH. CS
                    PF09128.6   1 qdspFqslelLKsrPahLavflryvlsqfdPspllfyLiadlyksatsKearrlaleihstFldrtaplkvkvseelaadie 82 
                                  q+s+Fqsle++K+rPahL+++l++v++qf+P+pll++L+ad+ +s ++Kea++++l+++++Fl++ta+l+v+v+ ++a++++
  gi|6678668|ref|NP_032514.1|  40 QNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSVAFELD 121
                                  79******************************************************************************** PP

                                  ..HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGGTTTGGGG..--S-HH....HHHHHHHHHHHHHHHHH CS
                    PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkqledfrqKrsmGLgllegeldkldqelkkdra....kErrvaekllskleeil 160
                                  r+r++l++e+++rr++qe+ q++++++++qledfr+Kr mG++ +e+el++l+ +++kdr     +Er+vae+lls+lee++
  gi|6678668|ref|NP_032514.1| 122 RTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGnyeaRERHVAERLLSHLEETQ 203
                                  ************************************************************9999****************** PP

                                  ...HTS-HHHHHHHHHHHHHHHHHTT-- CS
                    PF09128.6 161 stsskteeeksstlqyailtylkhlgvk 188
                                  +t+s+ +eeks+++++ai++y++hlgv+
  gi|6678668|ref|NP_032514.1| 204 HTIST-DEEKSAAVVTAISLYMRHLGVR 230
                                  99998.9*******************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
                                  ..HHHHHTT---HHHHHHHHHHHHHHHHHH..HHHHHHHHHTT-GGGGTTTGGGG..- CS
                    PF09128.6  83 rrrselrkeetlrrvlqelqqrvleeiqkq..ledfrqKrsmGLgllegeldkldqel 138
                                  +r + + ++e +r++l +++q+v  ++++   l+d++  r + L++l ++ d + +e 
  gi|6678668|ref|NP_032514.1| 582 ERGKVELAAECCREILHHVNQAVR-DMEDLlrLKDYQ--RRLDLTHLRQSSDPMLSEF 636
                                  444455677888999888887665.445440155554..6788888888877665544 PP

>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.2e-42   5.8e-39       1     180 []     418     602 ..     418     602 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.2e-42
                                  HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.TSSHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTT.SS----HHHHHHHH CS
                   PF00621.15   1 vieElietErsYvrdLevlvevyieplkesksilseeeiksiFsnieeilklhkeflekLeerlkek.kdaqkigdvflkle 81 
                                  vi El+ tE ++vr L+vl++ +++p+     +++ +e+++iF+ ++e++++h+ fl++L +r +e+   +++igdv+l++ 
  gi|6678668|ref|NP_032514.1| 418 VISELLVTEAAHVRMLRVLHDLFYQPMAD-GGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESgYLIEEIGDVLLARF 498
                                  799*************************9.8*******************************99555599********9966 PP

                                  S......HHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHHHHHHCTS-TT CS
                   PF00621.15  82 e......flkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLLkellkatpes 157
                                  +      f+k+ s ++s+++ al+ lk +++k+++f +f++eae++p++++l+L++++ + +qRl++YplLL+ + ++t+es
  gi|6678668|ref|NP_032514.1| 499 DgaegswFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEES 580
                                  6699***************************************************************************988 PP

                                  SHHHHHHHHHHHHHHHHHHHHHH CS
                   PF00621.15 158 hpdyealekaleaikevasqiNe 180
                                  + ++ ++e a e+++e+++++N+
  gi|6678668|ref|NP_032514.1| 581 T-ERGKVELAAECCREILHHVNQ 602
                                  7.9*******************7 PP

>> PF15405.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0002      0.98       1      34 [.     646     678 ..     646     692 .. 0.89
   2 ?    0.6   0.0     0.096   4.7e+02     111     133 ..     733     755 ..     699     757 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                    PF15405.1   1 lifkgqlkkkegsksesadiqvyLfDhalLlvki 34 
                                  l+++g+l  + ++++   +++v L+D +lLl++ 
  gi|6678668|ref|NP_032514.1| 646 LVHEGPLTWRVTKDKAI-EVHVLLLDDLLLLLQR 678
                                  79*********999665.************9875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.096
                    PF15405.1 111 gyeltLyastlaarqkwlekIek 133
                                   + + L a+t ++r++w++ I++
  gi|6678668|ref|NP_032514.1| 733 AQIYELVAQTSSERKNWCNLITE 755
                                  3447899***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       437  (0.0294653); expected 296.6 (0.02)
Passed bias filter:                      325  (0.0219136); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.54u 0.65s 00:00:02.19 Elapsed: 00:00:00.57
# Mc/sec: 4136.03
//
Query:       gi|40807354|ref|NP_064305.2|  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-29  102.9   0.7    9.6e-12   45.0   0.1    3.4  3  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     9e-08    0.0013       2      41 ..     126     171 ..     125     237 .. 0.84
   2 !   35.8   0.0   4.6e-13   6.8e-09      43     117 ..     291     367 ..     272     368 .. 0.92
   3 !   45.0   0.1   6.4e-16   9.6e-12       7     118 .]     385     504 ..     380     504 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9e-08
                                   HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS......S CS
                    PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkka......k 41 
                                   le++l d   + +F +F+e ++ e+ ++Fwl+ e f+++      +
  gi|40807354|ref|NP_064305.2| 126 LEQVLRDTVVLPYFLQFMELRRMEHLVKFWLEAESFHSTtwsrirA 171
                                   899**********************************995554441 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 4.6e-13
                                   HHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS....TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH CS
                    PF00615.14  43 qeelskkakeIynkylapsspkelnidkklreeleknleka..qpsrklfeeaqeevfellekdsypkFlkselylr 117
                                    +++ ++a + ++ky++p+++k + i +++r+ + +++  +  q ++++f  aq+ vf+ +e++ +++Fl+s  + +
  gi|40807354|ref|NP_064305.2| 291 MKSIEQDAVNTFTKYISPDAAKPIPITEAMRNDIIAKICGEdgQVDPNCFVLAQAVVFSAMEQEHFSEFLRSHHFCK 367
                                   5678899******************************999999*****************************99965 PP

  == domain 3  score: 45.0 bits;  conditional E-value: 6.4e-16
                                   CSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS.......SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                    PF00615.14   7 edqpgrslFreFlesefseenleFwlaveefkka.......keqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                     ++ + +F e++e+e + + l+Fwla ++f+++        + +e +++a  +y+ky++ ++++ l +d+ +r e+e+n+
  gi|40807354|ref|NP_064305.2| 385 FCESALFYFSEYMEKEDAVNILQFWLAADNFQSQlaakkgqYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNI 465
                                   55666779*******************************99888999********************************** PP

                                   CS...TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  81 eka.qpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                     +  p +++f    ++  +++ek   p Fl+s+ly ++
  gi|40807354|ref|NP_064305.2| 466 CREgGPLPNCFTTPLRQAWTTMEKVFLPGFLSSNLYYKY 504
                                   *99999******************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       612  (0.0412649); expected 296.6 (0.02)
Passed bias filter:                      389  (0.0262288); expected 296.6 (0.02)
Passed Vit filter:                        27  (0.00182051); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.47u 0.83s 00:00:02.29 Elapsed: 00:00:00.71
# Mc/sec: 2433.86
//
Query:       gi|33859769|ref|NP_570933.1|  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-67  226.2   0.0      1e-66  224.8   0.0    1.8  1  PF00069.20  Protein kinase domain
    3.7e-27   95.0   0.0    5.5e-27   94.4   0.0    1.2  1  PF07714.12  Protein tyrosine kinase
    1.7e-19   70.0   3.2    3.8e-19   68.9   3.2    1.6  1  PF00615.14  Regulator of G protein signaling domain
    2.8e-10   40.3   0.1    6.6e-10   39.1   0.1    1.7  1  PF00169.24  PH domain
    0.00094   18.2   0.0     0.0015   17.5   0.0    1.3  1  PF14531.1   Kinase-like
  ------ inclusion threshold ------
      0.021   15.0   1.4       0.14   12.4   0.1    2.7  2  PF15413.1   Pleckstrin homology domain
      0.053   12.5   0.0       0.11   11.6   0.0    1.4  1  PF06293.9   Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.0   4.7e-70     1e-66       2     260 .]     150     411 ..     149     411 .. 0.95

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 4.7e-70
                                   EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHH.S...STTB--EEEEEEESSEEEEEEE CS
                    PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalrElkilkkl.n...Hpnivkllevfeekdelylvle 78 
                                   ++++++G+G+fG+Vy +++ +tgk++A+K+l+k++ k+k+ +t ++  +i+ +l +   +p+iv +  +f++ d+l ++l+
  gi|33859769|ref|NP_570933.1| 150 SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLvStgdCPFIVCMSYAFHTPDKLSFILD 230
                                   6899************************************9998886666666634666********************** PP

                                   --TTEBHHHHHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS- CS
                    PF00069.20  79 yveggdlfdllkkkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttlv 159
                                   +++ggdl+ +l+++g++se +++++a +i+ gle++H++ +++rDLKp+NiLlde+g+++i+D+Gla+    s+++ +  v
  gi|33859769|ref|NP_570933.1| 231 LMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC--DFSKKRPHASV 309
                                   *******************************************************************9..799999***** PP

                                   S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHHHH CS
                    PF00069.20 160 gtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepkssskseelkdlikkl 240
                                   gt+ YmAPEvl+k+  y++++D++slG++l++ll g+ pf++++++d++e+ r++l+  +e + + s    +el++l++ l
  gi|33859769|ref|NP_570933.1| 310 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFS----PELRSLLEGL 386
                                   ***********************************************************99998877....9********* PP

                                   T-SSGGGSTT.....HHHHHCSGGH CS
                    PF00069.20 241 lekdpakRlt.....aeeilkhpwl 260
                                   l++d ++Rl      a+e++++p++
  gi|33859769|ref|NP_570933.1| 387 LQRDVNRRLGclgrgAQEVKESPFF 411
                                   *********9999999999999987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   2.6e-30   5.5e-27       3     249 ..     151     394 ..     149     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 2.6e-30
                                   EEEEEEEESSEEEEEEEEETTTTSTEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTC....-BTTB--EEEEEESSSSEEE CS
                    PF07714.12   3 lgkklGeGafGeVvegtlkgekekkevkVavKtl.keeaeeeekeefleeakimkkl....khenivkllgvctkeeplli 78 
                                   +++ +G+G fGeV+ ++      ++    a+K l k++ + ++ e +  + +im +l    +++ iv +  +  + ++l +
  gi|33859769|ref|NP_570933.1| 151 VHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLdKKRIKMKQGETLALNERIMLSLvstgDCPFIVCMSYAFHTPDKLSF 227
                                   6789**********99988....777788999994333333333444334344433223258999****99999999**** PP

                                   EEE--TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEE CS
                    PF07714.12  79 vteyvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyy 159
                                   ++++++gGdL+ +L ++    ++  d+  +a++i  G+e+++++ +v rdL   N+Ll+e+++v+isD GLa d +    +
  gi|33859769|ref|NP_570933.1| 228 ILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS----K 302
                                   ****************9..9*******************************************************3....3 PP

                                   EETTTSECGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTS-GTTTTS..HHHHHHHHHHTTEES-BBTTSBHHHHHH CS
                    PF07714.12 160 kkkekaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypgl..sneevleklkegkrlekpencpeelyel 237
                                   k+ + +     +mapE+l++++ + s +D +s G +l+ ++  g+sp+ +   ++++ +++++    +e p++ ++el +l
  gi|33859769|ref|NP_570933.1| 303 KRPHASVGTHGYMAPEVLQKGVaYDSSADWFSLGCMLFKLLR-GHSPFRQHktKDKHEIDRMTLTMAVELPDSFSPELRSL 382
                                   44455667789*********98899****************9.99**99983344556777788888999*********** PP

                                   HHHHT-SSGGGS CS
                    PF07714.12 238 mkqCweeepekR 249
                                   ++  ++++ ++R
  gi|33859769|ref|NP_570933.1| 383 LEGLLQRDVNRR 394
                                   *99999999888 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   3.2   1.8e-22   3.8e-19       2     118 .]      13     132 ..      12     132 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.8e-22
                                   HHHHHCSHHHHHHHHHHHHHTTCT..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHHHHHH CS
                    PF00615.14   2 leslledqpgrslFreFlesefse..enleFwlaveefkkakeqeelskkakeIynkylapssp.kelnidkklreelekn 79 
                                   +e++++++ g  lFr+F+ +  +e    +eF++++++++k +++ee+  + +eI++ y++++   ++  ++k+++e+++ +
  gi|33859769|ref|NP_570933.1|  13 FEKIFSQKLGYLLFRDFCLNHLEEakPLVEFYEEIKKYEKLETEEERVVRSREIFDSYIMKELLaCSHPFSKNATEHVQGH 93 
                                   99*****************988888899********************************99986888************* PP

                                   HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   l k+q  ++lf+ + ee++++l+ d ++kF++s++++r+
  gi|33859769|ref|NP_570933.1|  94 LVKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRF 132
                                   ************************************986 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   3.1e-13   6.6e-10       1     102 [.     517     608 ..     517     610 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.1e-13
                                   ECEEEEEEEEE.TTSSSEEEEEEEEETTEEEEESSTTTTCESSESEEEESTTEEEEEECTTTCSTTSSSSEEEEEEETTSE CS
                    PF00169.24   1 vikeGyllkks.ellktwkkryfvLtsnyLlyfksskkksykapkgsiplndctvkkasstkfgaqkesnnyfeitfknve 80 
                                   +i +Gy++k++   l +w++ryf+L+ n+L++  + +     ap+    +++++  ++++       +++ ++ ++ + ++
  gi|33859769|ref|NP_570933.1| 517 CIVHGYMSKMGnPFLTQWQRRYFYLFPNRLEWRGEGE-----APQSLLTMEEIQSVEETQI------KERKCLLLKIRGGK 586
                                   7889***************************999996.....9**********77777777......49************ PP

                                   EEEEEESSHHHHHHHHHHHHHH CS
                    PF00169.24  81 syllsaeseeerkrWvqalknl 102
                                   +++l+++s+ e+ +W + l+++
  gi|33859769|ref|NP_570933.1| 587 QFVLQCDSDPELVQWKKELRDA 608
                                   ****************999876 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.2e-07    0.0015     159     289 .]     263     394 ..     232     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.2e-07
                                   HHHHHHTTEE-S--STTSEEE-TT--EEE--GCC-EETTEEE-.----.TTTS-HHHHHC-.XXXX--EEE-HHHHHHHHH CS
                     PF14531.1 159 aanLqarglvhgkispdnflldekggvfLggftaLvragkkvvvseve.kalaPpellaekggytsnttkmthkldaWqlG 238
                                   + ++++r +v  +++p+n+llde+g v + + +      kk + ++v  +++  pe+l++        + ++ + d   lG
  gi|33859769|ref|NP_570933.1| 263 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKRPHASVGtHGYMAPEVLQKG-------VAYDSSADWFSLG 336
                                   5799****************************988888888888555449********995.......78999******** PP

                                   HHHHHHHHSS---GGGGGG-SSHH...HHTT-----H....HHHHHHHHHT-SSGGGS CS
                     PF14531.1 239 lviysiwclrlPftllaeeaseew...kfklckkvpe....kvklLvkklLqrsqeaR 289
                                     ++ +   + Pf + + + ++e     + + ++ p+    +++ L+++lLqr++++R
  gi|33859769|ref|NP_570933.1| 337 CMLFKLLRGHSPFRQHKTKDKHEIdrmTLTMAVELPDsfspELRSLLEGLLQRDVNRR 394
                                   *************999888888887776666666666333379************998 PP

>> PF15413.1  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.5e-05      0.14       1      50 [.     519     565 ..     519     586 .. 0.74
   2 ?    1.5   0.0      0.15   3.2e+02      65     110 ..     560     606 ..     553     608 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
                     PF15413.1   1 ikGylkkkgskllkgWkrrwfiLrkdnvleYyksprdksdvalitkesek 50 
                                   ++Gy+ k g+ +l  W+rr+f L   n+le+  +  ++   +l+t e+ +
  gi|33859769|ref|NP_570933.1| 519 VHGYMSKMGNPFLTQWQRRYFYLF-PNRLEWRGE--GEAPQSLLTMEEIQ 565
                                   69**********************.899999888..44444444444443 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
                     PF15413.1  65 kianikdkkalelshsnefsi.aaeekslflkgdnneeteeWvealk 110
                                   ++++i++ +  ++   +++     + k+++l++d++ e  +W + l+
  gi|33859769|ref|NP_570933.1| 560 TMEEIQSVEETQIKERKCLLLkIRGGKQFVLQCDSDPELVQWKKELR 606
                                   5556665544444455544333378899**************88775 PP

>> PF06293.9  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05      0.11      99     164 ..     231     293 ..     221     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                     PF06293.9  99 legaqdLaeilakwaelaeelkralleavGrliakmhragvnHtdlnahnilldeeeekakvwliD 164
                                   l +  dL  +l ++  ++e+  r    ++    + mh++ v ++dl ++nillde++   +v + D
  gi|33859769|ref|NP_570933.1| 231 LMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG---HVRISD 293
                                   566779999999988899999999999999999***********************8...555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       604  (0.0407255); expected 296.6 (0.02)
Passed bias filter:                      490  (0.0330389); expected 296.6 (0.02)
Passed Vit filter:                        38  (0.0025622); expected 14.8 (0.001)
Passed Fwd filter:                         7  (0.000471984); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.64u 0.91s 00:00:02.54 Elapsed: 00:00:00.79
# Mc/sec: 2137.83
//
Query:       gi|190684665|ref|NP_035397.2|  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-36  124.2   1.0    3.7e-36  123.8   1.0    1.2  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   1.0   2.5e-40   3.7e-36       1     117 [.      64     178 ..      64     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 2.5e-40
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    s++ ll++++g+ +F+ Fl++efseenleFwla+eefkk ++  +l ++a+ I+++y+ +++pke+nid+++re +++nl
  gi|190684665|ref|NP_035397.2|  64 SFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNIDHETRELTKTNL 143
                                    68999*************************************************************************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylr 117
                                    +    + ++f+ aq ++ +l+ekdsyp+Flks+ y +
  gi|190684665|ref|NP_035397.2| 144 QA--ATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRD 178
                                    **..9******************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       456  (0.0307464); expected 296.6 (0.02)
Passed bias filter:                      351  (0.0236666); expected 296.6 (0.02)
Passed Vit filter:                        16  (0.00107882); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.67s 00:00:01.32 Elapsed: 00:00:00.68
# Mc/sec: 771.58
//
Query:       gi|258613896|ref|NP_997096.2|  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-33  113.1   0.6    2.8e-32  111.1   0.6    2.2  1  PF08628.7   Sorting nexin C terminal
    8.1e-29  100.4  11.6    1.2e-28   99.9   6.1    3.3  2  PF02194.10  PXA domain
    1.4e-18   67.0   2.0      4e-18   65.6   1.1    2.3  1  PF00615.14  Regulator of G protein signaling domain
    1.6e-17   63.2   0.1    1.6e-17   63.2   0.1    2.4  1  PF00787.19  PX domain
     0.0028   17.3   0.1     0.0076   15.9   0.1    1.7  1  PF12761.2   Actin cytoskeleton-regulatory complex protein END
     0.0093   15.3   0.7      0.029   13.7   0.0    2.2  1  PF06246.7   Isy1-like splicing family


Domain annotation for each model (and alignments):
>> PF08628.7  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.6   1.1e-35   2.8e-32       1     111 [.     701     806 ..     701     808 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 1.1e-35
                      PF08628.7   1 WlrgrallvvlkqllkqllgstiekklkekvqrltseeklasllkklkeilwpdgklatpppersdeerletkkeAkkeL 80 
                                    W+r r+l+++++    +++g+ti+k+++++v+++ se++l+ +++ +++++wp+gkla+p++ rs ++ +etk++A+++L
  gi|258613896|ref|NP_997096.2| 701 WVR-RTLIALVQ----VTFGRTINKQIRDTVSWISSEQMLVYYISAFRDAFWPNGKLAPPTRIRSVAQSQETKQRAQQKL 775
                                    9*9.********....**************************************************************** PP

                      PF08628.7  81 lellpdalvkvvGreaarealervfemLQne 111
                                    le++pd+l+++vG+++ar+++ ++f++LQ++
  gi|258613896|ref|NP_997096.2| 776 LENIPDTLQSLVGQQNARHGIIKIFKALQET 806
                                    *****************************86 PP

>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   6.1   4.9e-32   1.2e-28       6     182 ..       3     160 ..       1     163 [. 0.94
   2 ?   -1.0   0.2      0.42     1e+03     110     141 ..     798     828 ..     757     837 .. 0.58

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 4.9e-32
                     PF02194.10   6 ealeeiidliirdFVdsWYskispde.efpeeirqsiesailelsqrlrsvdlasllttrlldllakhlesfrkaqqevk 84 
                                    + l +++d+ +rd++ sWY ++s d+ ++   +  + ++++ +++qrl+ vd+++++++++++ l +h+ +++ a+++  
  gi|258613896|ref|NP_997096.2|   3 RVLRDVFDYSYRDYILSWYGNLSRDDgQLYHLLLDDFWEIVKQIRQRLSHVDVVKVVCNDIVKALLTHFCDLKAATARH- 81 
                                    66889*********************99999**********************************************99. PP

                     PF02194.10  85 erekkslqseeeevelalalkseteklhpaalskeaeekkylrklvegllsvlLpeedleckllrtllrEilacsvLkpl 164
                                                      + ++++  lh + l+++++e ++l+  ++ l+ +lLp +d+++  lrt+l Eil+ +vLkp+
  gi|258613896|ref|NP_997096.2|  82 ------------------EEQPRPFVLHAC-LKDSHDEVRFLQTCSQVLVLCLLPSKDIQSLSLRTMLAEILTTKVLKPV 142
                                    ..................455666677777.************************************************* PP

                     PF02194.10 165 vsklsdPdfiNelIikli 182
                                    v+ ls+Pd+iN+++  ++
  gi|258613896|ref|NP_997096.2| 143 VELLSNPDYINQMLLRQL 160
                                    ************998765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.42
                     PF02194.10 110 klhpaalskeaeekkylrklvegllsvlLpee 141
                                    k+ +a l+  +++k+ l  l+e ll  l pe 
  gi|258613896|ref|NP_997096.2| 798 KIFKA-LQETKANKHLLYVLMELLLTELCPEL 828
                                    55566.77777777777777777777776664 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   1.1   1.6e-21     4e-18       1     118 []     287     400 ..     287     400 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.6e-21
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    ++e++++++  r+ F +++e+  +   + Fw+  e++k+a +++e+ + + e+y++++   ++ke+ ++k+l +e++++l
  gi|258613896|ref|NP_997096.2| 287 QFEDIMTNPFYRERFGTYMERIDKRALVGFWESAEHLKNA-NKSEIPQLVSEMYQNFF--VESKEISVEKSLYKEIQQCL 363
                                    599*************************************.*****************..8889**************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       +   ++f ++q++v e l++ +yp Fl s+ly++l
  gi|258613896|ref|NP_997096.2| 364 VG-NRGIEVFSKIQADVSEVLRERYYPSFLVSDLYEKL 400
                                    *9.99******************************986 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   6.6e-21   1.6e-17       6     113 .]     517     624 ..     511     624 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 6.6e-21
                                    EEEEEEEEECSSSCEEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTTTSSSSCGTTSHHHHH CS
                     PF00787.19   6 vsvleretkgskkhsyylievelktg....akewtvkRrYsdFeeLhsqLlrkfprlklPplPkkvlfgsvrkkdeefie 81 
                                    ++v+e   +++++  +y ++v l++     +k+wtv Rr s+F++Lh++L ++ p+lk  +lP+ + +  +++ d +f+ 
  gi|258613896|ref|NP_997096.2| 517 AEVTE---ENGEQMPCYFVRVNLQEVggveTKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLP-FKSIDHKFLG 592
                                    33333...4699999*********999****************************55555555554444.3559****** PP

                                    HHHHHHHHHHHHHHTSCHHHHSHHHHHHHHCS CS
                     PF00787.19  82 krrkgLeeyLqrllshpelrksevltsFLevs 113
                                    k r++L+++Lq+lls++ l++se+l+ FL++s
  gi|258613896|ref|NP_997096.2| 593 KSRNQLNAFLQNLLSDERLFQSEALYAFLSPS 624
                                    *****************************986 PP

>> PF12761.2  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   3.1e-06    0.0076     130     185 ..     443     499 ..     405     507 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.1e-06
                      PF12761.2 130 salvk.keleqLLkYkeeqlrelkeskskegkdlksvkedielieeQvevLeeylks 185
                                     a++k +el++ L+Yk++ l++++++ + ++k ++++k++i lie+  + L+ ++++
  gi|258613896|ref|NP_997096.2| 443 FAVIKlRELNEKLEYKRQALSSIQNAPKPDKKIISKLKDEILLIEKECTALQLHMAR 499
                                    46676589***************9999999999*********************987 PP

>> PF06246.7  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.2e-05     0.029      74     115 ..     238     278 ..     230     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                      PF06246.7  74 rdLNDeiNkLlrekrkWesrIkeLgGpdykreskklldaegk 115
                                    r++   iN+L   k++ e+rI+ LgGp y +++    ++eg+
  gi|258613896|ref|NP_997096.2| 238 RNMKRYINQLTVAKKQCEKRIRILGGPAYDQQEDG-ASDEGE 278
                                    777778***********************999887.444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       876  (0.0590655); expected 296.6 (0.02)
Passed bias filter:                      493  (0.0332412); expected 296.6 (0.02)
Passed Vit filter:                        33  (0.00222507); expected 14.8 (0.001)
Passed Fwd filter:                         6  (0.000404558); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.92u 1.02s 00:00:02.94 Elapsed: 00:00:00.83
# Mc/sec: 2641.78
//
Query:       gi|226958679|ref|NP_001152958.1|  [L=1101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-39  134.2   3.1    4.3e-39  134.2   3.1    3.3  3  PF00621.15  RhoGEF domain
    5.4e-17   62.0   0.0    3.7e-16   59.3   0.0    2.4  1  PF13716.1   Divergent CRAL/TRIO domain
    7.4e-09   35.8   0.2    7.4e-09   35.8   0.2    5.0  3  PF00435.16  Spectrin repeat
    6.9e-07   29.4   0.7    1.7e-06   28.1   0.2    1.9  1  PF00169.24  PH domain
    2.5e-05   23.5   0.5    6.6e-05   22.2   0.1    1.9  1  PF00018.23  SH3 domain
    8.5e-05   22.0   0.1    0.00072   19.0   0.1    2.4  2  PF14604.1   Variant SH3 domain
  ------ inclusion threshold ------
      0.032   13.7   0.0      0.073   12.5   0.0    1.6  1  PF07653.12  Variant SH3 domain
      0.032   13.7   3.1      0.054   13.0   0.0    2.6  2  PF00015.16  Methyl-accepting chemotaxis protein (MCP) signall
        1.9    8.6   5.5        2.9    8.0   1.5    2.7  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00621.15  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4       0.1   1.7e+02      89     131 ..     262     303 ..     189     324 .. 0.75
   2 ?    0.6   0.7      0.26   4.3e+02      41     119 ..     376     499 ..     334     516 .. 0.58
   3 !  134.2   3.1   2.6e-42   4.3e-39       1     180 []     584     759 ..     584     759 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
                                       HHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHH CS
                        PF00621.15  89 eYisnfdkalkllkelskknskfkkflkeaeespesskldLes 131
                                       + + n+ +++ ll++l +++++f +f ++ ++ +  + l+L++
  gi|226958679|ref|NP_001152958.1| 262 DQLDNQATVQRLLAQLNETEAAFDEFWAKHQQ-KLEQCLQLRH 303
                                       44567888888888888888888888887777.3445555555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
                                       HHSCCHHHHHHHHHHHHHHHHH......................................HHHTT....SS----HH CS
                        PF00621.15  41 siFsnieeilklhkeflekLee......................................rlkek....kdaqkigd 75 
                                       si +++ee+ +l ++f ++                                         +   +       q+i +
  gi|226958679|ref|NP_001152958.1| 376 SIHPKCEELQHLCDHFASEVTRrrgllskslelhslletsmkwsdegifllasqpvdkcqS---QdgaeAALQEIEK 449
                                       5666666666666666666666555555555555555555555555555555555543321...1234433444444 PP

                                       HH.....HHHHSHHHHHHHH.HHTHHHHHHHHHHHHHH-HHHHHHHHHHH CS
                        PF00621.15  76 vf.....lkleeflkvYseY.isnfdkalkllkelskknskfkkflkeae 119
                                        +      k +e+ ++Y+eY +   ++ l+++++  +k+++ ++++ + +
  gi|226958679|ref|NP_001152958.1| 450 FLetgaeNKIQELNEIYKEYeCILNQDLLEHVQKVFQKQESTEEMFHRRQ 499
                                       44444544466688888888767777777777775555555666666333 PP

  == domain 3  score: 134.2 bits;  conditional E-value: 2.6e-42
                                       HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH.......TSSHHHHHHHHSCCHHHHHHHHHH.HHHHHHHHHHTTSS- CS
                        PF00621.15   1 vieElietErsYvrdLevlvevyieplkes......ksilseeeiksiFsnieeilklhke.flekLeerlkekkda 70 
                                       v++El++tEr+Yv++L  + e y  ++ ++      ++ l+ ++++++F+n+eei+++h++ fl +Le    + +  
  gi|226958679|ref|NP_001152958.1| 584 VMNELLDTERAYVEELLCVLEGYAAEMDNPlmahliSTGLQ-NKKNILFGNMEEIYHFHNRiFLRELES---CIDCP 656
                                       79******************************777555444.7899*************6659******...88999 PP

                                       ---HHHHHHHHSHHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHGGG.TT--HHHHTTHHHHHHHHHHHHH CS
                        PF00621.15  71 qkigdvflkleeflkvYseYisnfdkalkllkelskknskfkkflkeaeespesskldLeslLikPvqRlprYplLL 147
                                       + +g +fl++ e +++Y++Y++n++++++l +++s ++  f+++ k     +  +kl+L+s+L+kPvqR+++Y+lLL
  gi|226958679|ref|NP_001152958.1| 657 ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPF-FQECQK-----KLDHKLSLDSYLLKPVQRITKYQLLL 727
                                       *********555588****************99988866.555555.....45569********************* PP

                                       HHHHCTS-TTSHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00621.15 148 kellkatpeshpdyealekaleaikevasqiNe 180
                                       ke+lk++++ +   e+l++al++i  +++ +N+
  gi|226958679|ref|NP_001152958.1| 728 KEMLKYSKHCE-GAEDLQEALSSILGILKAVND 759
                                       *******8666.89***************9996 PP

>> PF13716.1  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   2.2e-19   3.7e-16       4     148 ..      30     172 ..      27     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.2e-19
                         PF13716.1   4 lltggkdregrpvvvfiakyl...pstddydkllkyllhtledeivgkp..yvlVyfhtglssenkpslswlkklyk 75 
                                       +l+gg+ ++g+pv++f+       ++ +++++++ yl ++++ +  ++   ++lV++ ++    +k  +  +k    
  gi|226958679|ref|NP_001152958.1|  30 YLSGGRGQDGSPVITFPDYPAfseIPDKEFQNVMTYLTSIPSLQ--DAGigFILVIDRRQ----DK--WTSVKASVL 98 
                                       789**************55554687777*************999..55578*********....78..999999999 PP

                         PF13716.1  76 tlprrykknlkkvylvhpstflksilstllslfvskkflkkk..viyisslseLseyiditqlkkslpgvysyde 148
                                        +  +++ nl+ v++++p+ f++ +ls +   f +  f k k  v ++ss+ eL+ yid++ql+++l+g+++y++
  gi|226958679|ref|NP_001152958.1|  99 RIAASFPANLQLVLVLRPTGFFQRTLSDIAFKFNRDEF-KMKvpVMMLSSVPELHGYIDKSQLTEDLGGTLDYCH 172
                                       999****************6666666665555555555.44445999**************************98 PP

>> PF00435.16  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   8.6       0.2   3.2e+02       4     105 .]     183     297 ..     180     297 .. 0.79
   2 !   35.8   0.2   4.5e-12   7.4e-09       4     103 ..     302     402 ..     299     404 .. 0.85
   3 ?    2.1   2.8      0.14   2.3e+02       8      65 ..     457     510 ..     455     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
                                       HHHHHHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH............HHHHHH CS
                        PF00435.16   4 qqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaa.qqervealn............elaekl 67 
                                       + fa  +++  ++++   ++l++++l++d++++   l +h++ +a +++  q  +++ n              a ++
  gi|226958679|ref|NP_001152958.1| 183 ESFALMVKQTAQMLQAFGTELAETELPNDVQSTSLVLSAHTEKKAKVKEdLQLALKEGNsileslreplaeSAAHSV 259
                                       678888999999999999********************999999988887888887777666755555553333333 PP

                                       HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16  68 ideghsaseeieerleelnerWeeLlelaaerkqkLee 105
                                        + + + +  ++  l++lne  ++  e +a+++qkLe+
  gi|226958679|ref|NP_001152958.1| 260 NQDQLDNQATVQRLLAQLNETEAAFDEFWAKHQQKLEQ 297
                                       44455566999999999999999999999999999986 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 4.5e-12
                                       HHHHHHHHHHHHHHHHH.HHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH CS
                        PF00435.16   4 qqfaqdadeleeWieek.eellssedlgkdleevqallkkhkaleaelaaqqervealnelaeklideghsaseeie 79 
                                       + f+q  +e++  ++ + +++++ +d+g++l++vq llk+++a+e+  + + ++ +al   +++li+++h+a ++i+
  gi|226958679|ref|NP_001152958.1| 302 RHFEQGFREVKTTLDSMsQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARALSLEGQQLIENRHYAVDSIH 378
                                       55555555555555555333335599*************************************************** PP

                                       HHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16  80 erleelnerWeeLlelaaerkqkL 103
                                        ++eel++  ++  + + +r+  L
  gi|226958679|ref|NP_001152958.1| 379 PKCEELQHLCDHFASEVTRRRGLL 402
                                       **************9999999877 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
                                       HHHHHHHHHHHHHHHHHCTSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00435.16   8 qdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervealnelae 65 
                                       ++++el+e  +e e +l ++dl   le+vq+  +k +  e+ +  +q  +++l + ++
  gi|226958679|ref|NP_001152958.1| 457 NKIQELNEIYKEYECIL-NQDL---LEHVQKVFQKQESTEEMFHRRQASLKKLAAKQT 510
                                       56788888888888888.6666...8**************************998776 PP

>> PF00169.24  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2     1e-09   1.7e-06       3     103 ..     792     893 ..     790     894 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1e-09
                                       EEEEEEEEETTSSSEEEEEEEEETTEEEEESSTTT.......TCESSESEEEESTTEEEEEECTTTCSTTSSSSEEE CS
                        PF00169.24   3 keGyllkksellktwkkryfvLtsnyLlyfksskk.......ksykapkgsiplndctvkkasstkfgaqkesnnyf 72 
                                       k+G    k+  + ++ +r+++L+++ +l++k++++         ++++k+s +++ + +++  +        ++  f
  gi|226958679|ref|NP_001152958.1| 792 KKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREEngegyekAPSYSYKQSLNMTAVGITENVKG-------DTKKF 861
                                       77888888899999**************************9999999999999999999999997.......799** PP

                                       EEEETTS.EEEEEEESSHHHHHHHHHHHHHHH CS
                        PF00169.24  73 eitfknv.esyllsaeseeerkrWvqalknll 103
                                       ei+ + + e y+++a+++e + +Wv+ ++++l
  gi|226958679|ref|NP_001152958.1| 862 EIWYNAReEVYIIQAPTPEIKAAWVNEIRKVL 893
                                       ***999999*******************9986 PP

>> PF00018.23  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     4e-08   6.6e-05       9      48 .]    1017    1056 ..    1013    1056 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4e-08
                                        SSTTB-EB-TTEEEEEEEESSSSEEEEEETTSTEEEEEEG CS
                        PF00018.23    9 resdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48  
                                          +d L ++ GD+++v+e+  +g w +r+ ++ keG++P+
  gi|226958679|ref|NP_001152958.1| 1017 GGPDTLAMRSGDMVEVVEEGAEGLWYVRDLTSSKEGWVPA 1056
                                        5699******************9999****99*******7 PP

>> PF14604.1  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.72   1.2e+03      20      35 ..      79      94 ..      79     107 .. 0.83
   2 !   19.0   0.1   4.4e-07   0.00072       9      46 ..    1018    1057 ..    1014    1059 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.72
                         PF14604.1 20 vitvleetedgWllGe 35
                                      +i+v+ + +d W  ++
  gi|226958679|ref|NP_001152958.1| 79 FILVIDRRQDKWTSVK 94
                                      6999*999****9987 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.4e-07
                         PF14604.1    9 dddELslskGdvitvleetedgWllGe.l.tGrtGlvPan 46  
                                        ++d L ++ Gd++ v+ee  +g ++++ l +++ G+vPa+
  gi|226958679|ref|NP_001152958.1| 1018 GPDTLAMRSGDMVEVVEEGAEGLWYVRdLtSSKEGWVPAS 1057
                                        5899************9989999999865699******98 PP

>> PF07653.12  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05     0.073      12      53 ..    1018    1060 ..    1007    1062 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
                                        CTTB--B-TTEEEEEE.ECCGCTCEEEEE..CCCEEEEEGCHCC CS
                        PF07653.12   12 dpseLsfkkGdvikvlgskesdgwwlgev..gGrvGlfPsslve 53  
                                         p  L  + Gd ++v+ +++++g w+++     + G++P s+++
  gi|226958679|ref|NP_001152958.1| 1018 GPDTLAMRSGDMVEVV-EEGAEGLWYVRDltSSKEGWVPASSLS 1060
                                        56669999********.9999999***99988999****99885 PP

>> PF00015.16  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.3e-05     0.054     101     210 ..     283     391 ..     267     394 .. 0.86
   2 ?   -0.0   0.1      0.31   5.2e+02      88     144 ..     455     509 ..     444     516 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
                                       HHHHHHHH..............HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        PF00015.16 101 lieeivkeindsveslqevrteveegselveetgealkeIveavaeiadlvqeiaaaseeqsasieevnqaveeide 177
                                       +  e  ++ ++ +e   + r + e+g  +v++t +++++  +a +++ +++  ++   ++++a  e+ + av++   
  gi|226958679|ref|NP_001152958.1| 283 AFDEFWAKHQQKLEQCLQLR-HFEQGFREVKTTLDSMSQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSSVAVDKARA 358
                                       55555555555555555554.5899*************9999*********************************** PP

                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
                        PF00015.16 178 vtkenaalveeaaaaaetleeqaeeleelvaqF 210
                                       ++ e + l+e+   a+ +++ + eel++l ++F
  gi|226958679|ref|NP_001152958.1| 359 LSLEGQQLIENRHYAVDSIHPKCEELQHLCDHF 391
                                       *****************************9999 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.31
                                       HHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHCCHHHHHHHHH CS
                        PF00015.16  88 AersaqaakeieklieeivkeindsveslqevrteveegselveetgealkeIveav 144
                                       Ae+  q  +ei k  e i ++  d +e +q+v ++ e++ e+ ++ + +lk+++++ 
  gi|226958679|ref|NP_001152958.1| 455 AENKIQELNEIYKEYECILNQ--DLLEHVQKVFQKQESTEEMFHRRQASLKKLAAKQ 509
                                       555556667777777777777..89999999*9*********999999999998765 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.5    0.0018       2.9      32     102 ..     445     507 ..     434     512 .. 0.90
   2 ?    1.0   0.1      0.26   4.2e+02      51      94 ..     670     718 ..     664     735 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
                                       HHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS..TTTTTTHHHHHHHHHHHH CS
                        PF00615.14  32 laveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlekaqpsrklfeeaqeevfelle 102
                                       +++e+f ++   e+ +++ +eIy++y        + ++++l e+++k  +k++ ++++f++ q+++++l +
  gi|226958679|ref|NP_001152958.1| 445 QEIEKFLET-GAENKIQELNEIYKEYE-------CILNQDLLEHVQKVFQKQESTEEMFHRRQASLKKLAA 507
                                       689999999.9999999*******997.......9999*************************99888755 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
                                       HHHHHHHTSTTSTTSS....TS-HHHHHHHHHHHCS...TTTTTTHHHH CS
                        PF00615.14  51 keIynkylapsspkel....nidkklreeleknleka.qpsrklfeeaq 94 
                                       ++Iy+ky++++  +e       d+  ++e++k+l ++ + ++ l++ +q
  gi|226958679|ref|NP_001152958.1| 670 FQIYEKYCQNKPRSESlwrqCSDCPFFQECQKKLDHKlSLDSYLLKPVQ 718
                                       6899999987776553233345677777777777776544455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1101 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       856  (0.0577169); expected 296.6 (0.02)
Passed bias filter:                      420  (0.0283191); expected 296.6 (0.02)
Passed Vit filter:                        45  (0.00303419); expected 14.8 (0.001)
Passed Fwd filter:                        10  (0.000674263); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.17u 0.80s 00:00:02.97 Elapsed: 00:00:00.71
# Mc/sec: 4047.85
//
Query:       gi|240120077|ref|NP_001155294.1|  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-36  123.9   1.5    5.4e-36  123.2   1.5    1.3  1  PF00615.14  Regulator of G protein signaling domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.041   13.9   0.0    1.9  2  PF10774.4   Domain of unknown function (DUF4226)


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   1.5   7.2e-40   5.4e-36       1     118 []     104     219 ..     104     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 7.2e-40
                                       -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHH CS
                        PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreele 77 
                                       ++++++++++gr+lFreFl++e+seenl Fwla+e++kk ++++ + +ka+ Iy+ y++  spke+ +d+++re ++
  gi|240120077|ref|NP_001155294.1| 104 NFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKAVEEKARMIYEDYISILSPKEVSLDSRVREVIN 180
                                       699************************************************************************** PP

                                       HHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                        PF00615.14  78 knlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                       ++l +  ps++++e+aq ++++l+++ds+p+Fl+s++y+++
  gi|240120077|ref|NP_001155294.1| 181 RSLLD--PSPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKAF 219
                                       *****..*******************************986 PP

>> PF10774.4  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.5e-06     0.041      38      85 ..      76     127 ..      73     152 .. 0.84
   2 ?   -2.1   0.0      0.52   3.8e+03      67      84 ..     198     215 ..     192     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.5e-06
                         PF10774.4  38 AhasavegrrrLdaiqqeieeavakqadalD....TpaGarefqkFLlaklr 85 
                                        h++  e+ + L++ q+ + ++v + ++  D    TpaG   f +FL++   
  gi|240120077|ref|NP_001155294.1|  76 PHTTKMESIQVLEECQNPTADEVLSWSQNFDkmmkTPAGRNLFREFLRTEYS 127
                                       69999******************876665554444************99765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.52
                         PF10774.4  67 lDTpaGarefqkFLlakl 84 
                                       + T++    f +FL ++ 
  gi|240120077|ref|NP_001155294.1| 198 IYTLMHRDSFPRFLNSQI 215
                                       568888889999*99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       776  (0.0523228); expected 296.6 (0.02)
Passed bias filter:                      299  (0.0201605); expected 296.6 (0.02)
Passed Vit filter:                        28  (0.00188794); expected 14.8 (0.001)
Passed Fwd filter:                         2  (0.000134853); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.63s 00:00:01.29 Elapsed: 00:00:00.61
# Mc/sec: 984.22
//
Query:       gi|227430346|ref|NP_033863.2|  [L=868]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-31  106.6   0.3    6.4e-31  105.9   0.3    1.4  1  PF00778.12  DIX domain
    5.8e-29  100.5   0.3    1.2e-28   99.5   0.3    1.6  1  PF00615.14  Regulator of G protein signaling domain
    6.2e-16   57.8   1.8    2.6e-15   55.8   1.8    2.2  1  PF08833.5   Axin beta-catenin binding domain


Domain annotation for each model (and alignments):
>> PF00778.12  DIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.3   1.3e-34   6.4e-31       2      84 .]     787     868 .]     786     868 .] 0.97

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.3e-34
                     PF00778.12   2 eetkvvYylddeetpylvkipkreeevTLgdfKaalsrkgnykyffkaldpdfgr.vVkeevteDdakLplfegkvvawl 80 
                                    +++ v+Yy+++e++py++ + +r+  vTLg+fK++l++kg+y+y+fk+++++f++ vV+eev+eD+a+Lp+fe+k+++++
  gi|227430346|ref|NP_033863.2| 787 DSIVVAYYFCGEPIPYRTLVRGRA--VTLGQFKELLTKKGSYRYYFKKVSDEFDCgVVFEEVREDEAVLPVFEEKIIGKV 864
                                    5789********************..****************************************************** PP

                     PF00778.12  81 esee 84 
                                    e+++
  gi|227430346|ref|NP_033863.2| 865 EKVD 868
                                    9975 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.3   2.5e-32   1.2e-28       1     118 []      93     215 ..      93     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2.5e-32
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS....SHHHHHHHHHHHHHHHHTSTTST.TSSTS-HHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkka....keqeelskkakeIynkylapssp.kelnidkklree 75 
                                    sl+sll+dq+g+slFr+Fl++e + + l+Fw+a+  f+k     +++e++ k a++Iy+ky+ +s+   + + + ++++ 
  gi|227430346|ref|NP_033863.2|  93 SLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACSGFRKLepcdSNEEKRLKLARAIYRKYILDSNGiVSRQTKPATKSF 172
                                    799****************************************999****************887775666********* PP

                                    HHHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  76 leknlekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    +++++ k+q ++ +f++aq+e+++++e+++yp Flks++yl++
  gi|227430346|ref|NP_033863.2| 173 IKDCVMKQQIDPAMFDQAQTEIQSTMEENTYPSFLKSDIYLEY 215
                                    ****************************************986 PP

>> PF08833.5  Axin beta-catenin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   1.8   5.3e-19   2.6e-15       1      44 [.     468     499 ..     468     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.3e-19
                      PF08833.5   1 eDdpqsILDdHvsRVlktPgtqSPgpnisslrrgrhspgsrspd 44 
                                    e++p+sILD+Hv+RV++tPg+qSPgp            g+rspd
  gi|227430346|ref|NP_033863.2| 468 EENPESILDEHVQRVMRTPGCQSPGP------------GHRSPD 499
                                    89***********************9............444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       542  (0.0365451); expected 296.6 (0.02)
Passed bias filter:                      319  (0.021509); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.50u 0.60s 00:00:02.10 Elapsed: 00:00:00.55
# Mc/sec: 4119.58
//
Query:       gi|31543586|ref|NP_033087.2|  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-38  131.0   5.2      2e-38  131.0   5.2    1.5  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.64   9.5e+03      85     103 ..      33      51 ..      24      55 .. 0.49
   2 !  131.0   5.2   1.4e-42     2e-38       2     118 .]      84     198 ..      83     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.64
                                   TTTTTTHHHHHHHHHHHHH CS
                    PF00615.14  85 psrklfeeaqeevfellek 103
                                    +r+l+++ ++++  +l++
  gi|31543586|ref|NP_033087.2|  33 MKRTLLKDWKTRLSYFLQN 51 
                                   3444555555554444444 PP

  == domain 2  score: 131.0 bits;  conditional E-value: 1.4e-42
                                   HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS CS
                    PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlek 82 
                                   +++ll++++g+ +Fr Fl+sef+een+eFwla+e+fkk+k+ ++ls+ka++Iy+ ++++++pke+nid ++++ +++n+++
  gi|31543586|ref|NP_033087.2|  84 FDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKSLIAQNIQE 164
                                   89******************************************************************************* PP

                                   ..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  83 aqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                      ++ +f  aq++v++l+e++syp+Fl+se+y++l
  gi|31543586|ref|NP_033087.2| 165 --ATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDL 198
                                   ..9******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       709  (0.0478053); expected 296.6 (0.02)
Passed bias filter:                      400  (0.0269705); expected 296.6 (0.02)
Passed Vit filter:                        19  (0.0012811); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.81s 00:00:01.52 Elapsed: 00:00:00.66
# Mc/sec: 834.52
//
Query:       gi|78711828|ref|NP_001030608.1|  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-19   68.9   4.9    8.2e-19   67.8   4.8    1.5  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.26   3.9e+03      49      60 ..      36      49 ..       9      52 .. 0.48
   2 !   67.8   4.8   5.5e-23   8.2e-19       2     111 ..      55     167 ..      54     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.26
                                     H..HHHHHHHHTST CS
                       PF00615.14 49 k..akeIynkylap 60
                                     +  +++++++yla+
  gi|78711828|ref|NP_001030608.1| 36 EpsIRSVMQRYLAE 49
                                     13355555555544 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 5.5e-23
                                      HHHHHCSHHHHHHHHHHHHHTTCT..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHH CS
                       PF00615.14   2 leslledqpgrslFreFlesefse..enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreel 76 
                                      ++++++++ g+ lF++F+ +e  e   +++F+++++e++k +++e++ ++ +++y++y++++  ++  +++k+++e++
  gi|78711828|ref|NP_001030608.1|  55 FDKIFNQKIGFLLFKDFCLNEIGEavPQVKFYEEIKEYEKLDNEEDRLRRSRQMYDAYIMRELLSSThQFSKQAVEHV 132
                                      99*******************99999**************************************8888********** PP

                                      HHHHCS..TTTTTTHHHHHHHHHHHHHTHHHHHHT CS
                       PF00615.14  77 eknlekaqpsrklfeeaqeevfellekdsypkFlk 111
                                      +++l+k+q + +lf+ + ee++e l+ d ++kF++
  gi|78711828|ref|NP_001030608.1| 133 QSHLSKKQVTATLFQPYIEEICESLRGDIFQKFME 167
                                      *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       716  (0.0482773); expected 296.6 (0.02)
Passed bias filter:                      444  (0.0299373); expected 296.6 (0.02)
Passed Vit filter:                        32  (0.00215764); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.86s 00:00:01.64 Elapsed: 00:00:00.72
# Mc/sec: 786.73
//
Query:       gi|146134422|ref|NP_035398.2|  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-33  113.6   0.0      1e-32  112.6   0.0    1.5  1  PF00615.14  Regulator of G protein signaling domain
      1e-11   44.4   0.0    4.2e-11   42.4   0.0    2.1  2  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
    5.8e-11   41.9   0.0    1.7e-10   40.5   0.0    1.9  1  PF00631.17  GGL domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   2.1e-36     1e-32       1     118 []     299     413 ..     299     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 2.1e-36
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    ++++l+ d++gr+ F+ Fl++efs enl Fw+a+e++k   +q+++++ka+eIy+ +lap++ + +nid k+++ + k l
  gi|146134422|ref|NP_035398.2| 299 NFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYG-DQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGL 377
                                    5899************************************.*************************************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    ++  p+r ++++aq++++ l++kdsy ++lks++y+++
  gi|146134422|ref|NP_035398.2| 378 RH--PHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 413
                                    **..*******************************986 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   8.5e-15   4.2e-11       1      74 []      33     103 ..      33     103 .. 0.95
   2 ?   -2.1   0.0      0.67   3.3e+03      49      73 ..     131     154 ..     115     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 8.5e-15
                                    SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH--SSSSS-EEX CS
                     PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                                    gv+m ++r+  +++++++tG ++ +W+    ++  ++  eA +lg+ ++++g+i+++++ ++  ++ ++++Y+f
  gi|146134422|ref|NP_035398.2|  33 GVRMHNQRVLVTSVPHAMTGGDVLQWIT---QRLWISNLEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRF 103
                                    89**************************...678***************************8877777*****9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.67
                                    HHCTTCEESSSSHHH--SSSSS-EE CS
                     PF00610.16  49 ldqgliehvekrhsgFrdskqafYq 73 
                                     ++g++e  ek++  F+++ +  Y 
  gi|146134422|ref|NP_035398.2| 131 KKKGILEEYEKENYDFLNK-KINYK 154
                                    4789999999999779998.77776 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   3.4e-14   1.7e-10       1      68 []     216     280 ..     216     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.4e-14
                     PF00631.17   1 kqlklklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccwil 68 
                                    kq++ ++++ei++++++L+r+++k S +   +++Y e  s +D +++++  p+    Npwi++++++w+l
  gi|146134422|ref|NP_035398.2| 216 KQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEqfSSNDAIMSGC-LPS----NPWITDDTQFWDL 280
                                    688999*******************************************.999....***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       551  (0.0371519); expected 296.6 (0.02)
Passed bias filter:                      387  (0.026094); expected 296.6 (0.02)
Passed Vit filter:                        27  (0.00182051); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.27u 0.75s 00:00:02.02 Elapsed: 00:00:00.62
# Mc/sec: 2841.89
//
Query:       gi|238814328|ref|NP_766514.2|  [L=964]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-46  156.9   1.5      4e-46  156.9   1.5    1.8  1  PF02194.10  PXA domain
    2.3e-26   92.1   0.1      1e-25   90.0   0.1    2.2  1  PF08628.7   Sorting nexin C terminal
    1.1e-20   73.5   6.4    4.2e-20   71.6   1.8    3.2  3  PF00787.19  PX domain
    2.6e-11   43.6   2.2    2.6e-11   43.6   2.2    2.3  2  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF02194.10  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   1.5   1.1e-49     4e-46       1     184 [.     157     329 ..     157     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 1.1e-49
                     PF02194.10   1 spevdealeeiidliirdFVdsWYskispdeefpeeirqsiesailelsqrlrsvdlasllttrlldllakhlesfrkaq 80 
                                    s++vd++l e+++l++++FV++WY+ +++de+f++e+r +++ ++  l +r+ +vd++s++t++ll+  +kh+e++ ka+
  gi|238814328|ref|NP_766514.2| 157 SSKVDASLSEVLELVLENFVYPWYRDVTDDESFVDELRITLRFFASVLVRRIHKVDIPSIITKKLLKAAMKHIEVIVKAR 236
                                    689***************************************************************************** PP

                     PF02194.10  81 qevkerekkslqseeeevelalalkseteklhpaalskeaeekkylrklvegllsvlLpeedleckllrtllrEilacsv 160
                                    q+v         +++e +++a+  ++ +e lh a l+++++e++ylrkl+e l++++Lp+++ +c+ l++l+rEil++sv
  gi|238814328|ref|NP_766514.2| 237 QKV---------KNTEYLQQAALEEYGPE-LHVA-LRSRRDELQYLRKLTELLFPYILPPKATDCRSLTLLIREILSGSV 305
                                    ***.........8999*************.****.********************************************* PP

                     PF02194.10 161 LkplvsklsdPdfiNelIikliek 184
                                    L+p ++ l+dPd++N+l+i +i++
  gi|238814328|ref|NP_766514.2| 306 LLPSLDFLADPDTVNHLLIIFIDD 329
                                    *******************99987 PP

>> PF08628.7  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1   2.7e-29     1e-25       1     113 []     825     930 ..     825     930 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2.7e-29
                      PF08628.7   1 WlrgrallvvlkqllkqllgstiekklkekvqrltseeklasllkklkeilwpdgklatpppersdeerletkkeAkkeL 80 
                                    Wl  ++ll+  ++l+k++l+ +++ +l+ k+++l++e++l+sl+++l++++++++     +++rs +++++ +k++++e+
  gi|238814328|ref|NP_766514.2| 825 WL--HHLLMGTRILFKNTLEMYTDYYLQCKLEQLFQEHRLVSLITLLRDAIFCEN-----TEPRSLQDKQKGAKQTFEEM 897
                                    99..9************************************************99.....789***************** PP

                      PF08628.7  81 lellpdalvkvvGreaarealervfemLQnevl 113
                                    ++++pd++vk++G+e+++e+++ +f+ LQ++vl
  gi|238814328|ref|NP_766514.2| 898 MNYIPDLIVKCIGEETKYESIRLLFDGLQQPVL 930
                                    *******************************86 PP

>> PF00787.19  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.035   1.3e+02      48      93 ..     201     247 ..     192     255 .. 0.72
   2 ?   -2.0   0.0      0.78   2.9e+03      44      70 ..     413     439 ..     411     479 .. 0.69
   3 !   71.6   1.8   1.1e-23   4.2e-20      13     112 ..     601     703 ..     592     704 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.035
                                    HHHHHHHHTTSTSTSSSTTTSSSSCGTTSHHHHHHHHHHH..HHHHHH CS
                     PF00787.19  48 hsqLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkgL..eeyLqr 93 
                                     s L r+  ++ +P++  k+l++   +k+ e+i k r++   +eyLq+
  gi|238814328|ref|NP_766514.2| 201 ASVLVRRIHKVDIPSIITKKLLKA-AMKHIEVIVKARQKVknTEYLQQ 247
                                    4557777779************98.66666666665554411567776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.78
                                    HHHHHHHHHHHHTTSTSTSSSTTTSSS CS
                     PF00787.19  44 FeeLhsqLlrkfprlklPplPkkvlfg 70 
                                      +Lh++L++ ++++ l +  +k  f+
  gi|238814328|ref|NP_766514.2| 413 MLSLHEELQKIYKTYCLDESIDKIRFD 439
                                    678999999999877766655555554 PP

  == domain 3  score: 71.6 bits;  conditional E-value: 1.1e-23
                                    EECSSSCEEEEEEEEETTS......SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTTTSSSSCGTTSHHHHHHHHHH CS
                     PF00787.19  13 tkgskkhsyylievelktg......akewtvkRrYsdFeeLhsqLlrkfprlklPplPkkvlfgsvrkkdeefiekrrkg 86 
                                    ++ +++  ++ i ve+++        ++w+v+RrY +F+ L s+L++++ +    +lP+k+++g    k+ ef++++r++
  gi|238814328|ref|NP_766514.2| 601 KEKKERIPVFCIDVERNDRravghePEHWSVYRRYLEFYVLESKLTEFHGTFPDAQLPSKRIIGP---KNYEFLKSKREE 677
                                    3357888999999999999*********************************************9...9*********** PP

                                    HHHHHHHHHTSCHHHHSHHHHHHHHC CS
                     PF00787.19  87 LeeyLqrllshpelrksevltsFLev 112
                                    ++eyLq+l++hpel++s+ l++FL++
  gi|238814328|ref|NP_766514.2| 678 FQEYLQKLVQHPELSNSQLLADFLSP 703
                                    ************************97 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   2.2   7.1e-15   2.6e-11       2     115 ..     364     491 ..     363     495 .. 0.92
   2 ?   -1.8   0.1      0.86   3.2e+03      83     100 ..     873     904 ..     835     907 .. 0.56

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 7.1e-15
                                    HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS........SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHH CS
                     PF00615.14   2 leslledqpgrslFreFlesefseenleFwlaveefkka........keqeelskkakeIynkylapsspkelnidkklr 73 
                                    l+++ e+q+++  F +Fl++e + + l+F l veef+ +        +e  +l+++ ++Iy++y+ ++s  ++ +d  ++
  gi|238814328|ref|NP_766514.2| 364 LKQIREQQDLLFRFMNFLKQEGAVHVLQFCLTVEEFNDRilrpelsnDEMLSLHEELQKIYKTYCLDESIDKIRFDPFIV 443
                                    789999***************************************99899999999************************ PP

                                    HHHHHHHCS.........TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHH CS
                     PF00615.14  74 eeleknleka.......qpsrklfeeaqeevfellekdsypkFlksely 115
                                    ee+++  e         q++r ++ ea e+v++lle+   p F++s+ y
  gi|238814328|ref|NP_766514.2| 444 EEIQRIAEGPyidvvklQTMR-CLFEAYEHVLSLLENVFTPMFCHSDEY 491
                                    *****99988******66555.5556789*****************877 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.86
                                    ................TTTTTTHHHHHHHHHH CS
                     PF00615.14  83 a..............qpsrklfeeaqeevfel 100
                                                   + ++++fee+ +++ +l
  gi|238814328|ref|NP_766514.2| 873 IfcenteprslqdkqKGAKQTFEEMMNYIPDL 904
                                    25555555555555567788888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       705  (0.0475356); expected 296.6 (0.02)
Passed bias filter:                      515  (0.0347246); expected 296.6 (0.02)
Passed Vit filter:                        52  (0.00350617); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.08u 0.93s 00:00:03.01 Elapsed: 00:00:00.76
# Mc/sec: 3311.00
//
Query:       gi|160948569|ref|NP_599018.3|  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-36  124.0   3.5    5.4e-36  123.2   3.5    1.4  1  PF00615.14  Regulator of G protein signaling domain
    4.7e-07   29.8   0.0    9.3e-07   28.9   0.0    1.5  1  PF00595.19  PDZ domain (Also known as DHR or GLGF)
    0.00051   19.8   0.0     0.0011   18.8   0.0    1.4  1  PF13180.1   PDZ domain
  ------ inclusion threshold ------
       0.16   11.8  16.1        0.3   10.9  16.1    1.4  1  PF03153.8   Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   3.5   1.5e-39   5.4e-36       1     118 []     841     956 ..     841     956 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 1.5e-39
                                    -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHH CS
                     PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknl 80 
                                    sle+ll +++g+++F+ Fl++efseenleFwla+e+fkk k+q+++ +kak+I+ +++a ++ ke+n+d+ +re++++nl
  gi|160948569|ref|NP_599018.3| 841 SLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 920
                                    699***************************************************************************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    ++   +r +f+ aq+++f l+ekdsyp+Fl+s+lyl+l
  gi|160948569|ref|NP_599018.3| 921 QS--ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 956
                                    *9..9******************************975 PP

>> PF00595.19  PDZ domain (Also known as DHR or GLGF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.5e-10   9.3e-07       2      80 ..      19      91 ..      17      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.5e-10
                                   EEEEESTTSBTSEEEEEETTSSSSSEEEEEESTTSHHHHHTCSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
                     PF00595.19  2 vslekekrgglGfslkggsdkrdkgifvsevvpggaaeadglkeGDkIlsvNgvdvenvshdeavqaikgkkgevtLti 80
                                   +++ + +  g+Gf++       d ++ v+ v  gg+ae++gl+  D +l++N ++ve +   e +++i+++ +e+ L++
  gi|160948569|ref|NP_599018.3| 19 ITIRR-GKDGFGFTICC-----DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91
                                   55555.77778888875.....3589***********************************************999988 PP

>> PF13180.1  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.9e-07    0.0011      15      49 ..      37      71 ..      20      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.9e-07
                      PF13180.1 15 gvlvvsVkessPaakaglkpGDiilkvdgkkvksl 49
                                    v+v+ V++++Pa++agl++ D++l++++++v+  
  gi|160948569|ref|NP_599018.3| 37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHW 71
                                   48999*************************99765 PP

>> PF03153.8  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  16.1   8.1e-05       0.3      67     323 ..     438     680 ..     364     687 .. 0.42

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-05
                                    XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX......XX CS
                      PF03153.8  67 klfptqesqqpkkskaataaasaqenspssqetaksnaatkleagkvpanvtiktesgqlakvavpvmntqtaagsttlt 146
                                    +  p+++ ++p  s+ ++a++    + +  +++++ +a  +l+++ +  ++    + gq ++++  +  +++a g++   
  gi|160948569|ref|NP_599018.3| 438 QDLPPSKDPSP--SQELPAGQDLPPS-KDPSPSQELPAGQDLPPS-KDPSPSQELPVGQDLPPRKDSSGQEAAPGPE--S 511
                                    11111111111..1111111111111.111122222222222332.3333444444444444444444444444444..2 PP

                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXX.. CS
                      PF03153.8 147 tpaqqrsaqaleqpagaaaaaqassaqqqqapvssnaesqaqqqpnklvqqqqtdgasddv....kasvprvleaaap.. 220
                                     + +  +++  + +++++++++ s+  q ++p ++ ++ q     +++++q   +++++ v    +asv ++l  +++  
  gi|160948569|ref|NP_599018.3| 512 PSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVipesSASVQKRLPSQESps 591
                                    23333344444555555555555543444444444222222222222222222222221112222445555555555533 PP

                                    X............XXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXX CS
                      PF03153.8 221 lqenqlqqvlksqiessikeleakkaskvleqkvkaakqekkskavei.........eilQlDGagdtsdeeesdedeel 291
                                       +  ++ l +q++ss ++  a++a  + ++++                       +  QlDGa + s+         +
  gi|160948569|ref|NP_599018.3| 592 SLGSLPEKDLAEQTISSGEPPVATGAVLPASRPN-------------FvipevrldnAYSQLDGAHGGSSG--------E 650
                                    3334444445555555555555555555555444.............0444444444889*********97........3 PP

                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      PF03153.8 292 deDdedldkeeedegvieedpddseDDvsded 323
                                    deD+e+ ++    eg+++e++d s+D++ d +
  gi|160948569|ref|NP_599018.3| 651 DEDAEEGEE--GGEGEEDEEDDTSDDNYGDRS 680
                                    555522222..235666666666667666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       554  (0.0373542); expected 296.6 (0.02)
Passed bias filter:                      337  (0.0227227); expected 296.6 (0.02)
Passed Vit filter:                        41  (0.00276448); expected 14.8 (0.001)
Passed Fwd filter:                         6  (0.000404558); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.88u 0.64s 00:00:02.52 Elapsed: 00:00:00.57
# Mc/sec: 4347.55
//
Query:       gi|40789289|ref|NP_080656.2|  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-38  130.8   2.5      3e-38  130.5   2.5    1.1  1  PF00615.14  Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   2.5     2e-42     3e-38       1     118 []      56     171 ..      56     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 2e-42
                                   -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHC CS
                    PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknle 81 
                                   s++ ll++++g+ +Fr Fl++efseenleFwla+eefkk+++  +l +ka++I++++++ ++p+e+nid ++re ++kn++
  gi|40789289|ref|NP_080656.2|  56 SFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVTKAHRIFEEFVDVQAPREVNIDFQTREATRKNMQ 136
                                   6899***************************************************************************** PP

                                   S..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  82 kaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   +  ps ++f++aq +v++l+ekdsyp+Fl+s++yl+l
  gi|40789289|ref|NP_080656.2| 137 E--PSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 171
                                   *..*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       381  (0.0256894); expected 296.6 (0.02)
Passed bias filter:                      264  (0.0178006); expected 296.6 (0.02)
Passed Vit filter:                        17  (0.00114625); expected 14.8 (0.001)
Passed Fwd filter:                         1  (6.74263e-05); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.60s 00:00:01.17 Elapsed: 00:00:00.64
# Mc/sec: 734.16
//
Query:       gi|159032059|ref|NP_061357.3|  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-61  207.3   0.0    2.9e-61  206.9   0.0    1.2  1  PF00069.20  Protein kinase domain
    1.5e-32  112.7   0.0    2.9e-32  111.7   0.0    1.5  1  PF07714.12  Protein tyrosine kinase
      2e-22   79.5   0.1    9.9e-22   77.2   0.0    2.1  2  PF00615.14  Regulator of G protein signaling domain
  ------ inclusion threshold ------
      0.041   12.8   0.0      0.063   12.2   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   7.8e-65   2.9e-61       2     260 .]     187     448 ..     186     448 .. 0.90

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 7.8e-65
                                    EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEEE-- CS
                     PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvleyv 80 
                                    ++ + lG+G+fG+V+ ++ + tgk++A+K+l+k++ k++k ++ ++ E +il+k+n++++v+l  ++e+kd l+lvl ++
  gi|159032059|ref|NP_061357.3| 187 RQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALnEKQILEKVNSQFVVNLAYAYETKDALCLVLTIM 266
                                    66799******************************999988775556********************************* PP

                                    TTEBHHHHHH..HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS CS
                     PF00069.20  81 eggdlfdllk..kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttl 158
                                    +ggdl  ++    +  ++ee + ++a +il+gle lH+++ ++rDLKpeNiLld+ g+++i+D+Gla k + ++   + +
  gi|159032059|ref|NP_061357.3| 267 NGGDLKFHIYnmGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVK-IPEGDLIRGR 345
                                    ******99996667778***************************************************9.99999***** PP

                                    -S-GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHH CS
                     PF00069.20 159 vgtreYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepkssskseelkdlik 238
                                    vgt  YmAPEvl+ ++ y+ + D W+lG+++ye+++g+ pf+g++e+    + +++ ++ le +e  ss+ see+k++++
  gi|159032059|ref|NP_061357.3| 346 VGTVGYMAPEVLN-NQRYGLSPDYWGLGCLIYEMIEGQSPFRGRKEK---VKREEVDRRVLETEEVYSSKFSEEAKSICN 421
                                    *************.****************************99444...44444444444455555555669******* PP

                                    HHT-SSGGGSTT.....HHHHHCSGGH CS
                     PF00069.20 239 kllekdpakRlt.....aeeilkhpwl 260
                                     ll+kd ++Rl      a+e+++hp++
  gi|159032059|ref|NP_061357.3| 422 MLLTKDSKQRLGcqeegAAEVKRHPFF 448
                                    ************888888899999987 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   7.9e-36   2.9e-32       4     249 ..     189     431 ..     186     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 7.9e-36
                                    EEEEEEESSEEEEEEEEETTTTSTEEEEEEEEEST.TSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEEEEE CS
                     PF07714.12   4 gkklGeGafGeVvegtlkgekekkevkVavKtlke.eaeeee.keefleeakimkklkhenivkllgvctkeepllivte 81 
                                     + lG+G fGeV+ ++++     +    a K l++ + ++++ +++ l+e +i++k++ + +v+l  ++ +++ l++v+ 
  gi|159032059|ref|NP_061357.3| 189 YRVLGKGGFGEVCACQVR----ATGKMYACKRLEKkRIKKRKgESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT 264
                                    689***************....777888999995513333332666789******************************* PP

                                    --TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEEEE CS
                     PF07714.12  82 yvegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyykk 161
                                     ++gGdL+ ++ +  ++ ++ e+ l +a++i  G+e L++++ v rdL   N+Ll++ ++++isD GLa +i + d    
  gi|159032059|ref|NP_061357.3| 265 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGDLI-- 342
                                    **************9*********************************************************554444.. PP

                                    TTTSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GTTTTSHHHHHHHHH....HTTEES-BBTTSBHHHHHH CS
                     PF07714.12 162 kekaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsneevlekl....kegkrlekpencpeelyel 237
                                     +++   v +mapE+l+++++    D W  G l++E+++ g+sp+ g +++   e++     e +++   ++ +ee +++
  gi|159032059|ref|NP_061357.3| 343 -RGRVGTVGYMAPEVLNNQRYGLSPDYWGLGCLIYEMIE-GQSPFRGRKEKVKREEVdrrvLETEEVYS-SKFSEEAKSI 419
                                    .4667899******************************9.99**8776555444444100033333333.3356666666 PP

                                    HHHHT-SSGGGS CS
                     PF07714.12 238 mkqCweeepekR 249
                                     +  ++++ ++R
  gi|159032059|ref|NP_061357.3| 420 CNMLLTKDSKQR 431
                                    666666666666 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   2.7e-25   9.9e-22       4     118 .]      55     170 ..      52     170 .. 0.95
   2 ?   -1.0   0.0      0.49   1.8e+03      43      72 ..     409     438 ..     395     445 .. 0.78

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 2.7e-25
                                    HHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHHHH CS
                     PF00615.14   4 slledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreeleknl 80 
                                    sl+++qp gr lFr+F+e++     +++F++ v e++ + ++e+l +k keI++kyl+p+sp ++ ++ ++l++++ek+l
  gi|159032059|ref|NP_061357.3|  55 SLCDKQPiGRLLFRQFCETRPGLeCYIQFLDLVAEYEIT-PDENLGAKGKEIMTKYLTPKSPVFIaQVGQDLVSQTEKKL 133
                                    79*****************7554489*************.**************************************** PP

                                    CS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  81 ekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                     + +p+++lf ++ ++v+++l+ d+++++l+s++++r+
  gi|159032059|ref|NP_061357.3| 134 LQ-SPCKELFSACAQSVHDYLKGDPFHEYLDSMYFDRF 170
                                    **.9*******************************986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.49
                                    HHHHHHHHHHHHHHHTSTTSTTSSTS-HHH CS
                     PF00615.14  43 qeelskkakeIynkylapsspkelnidkkl 72 
                                    ++++s++ak+I n  l+++s++ l  +++ 
  gi|159032059|ref|NP_061357.3| 409 SSKFSEEAKSICNMLLTKDSKQRLGCQEEG 438
                                    578899999999999999999888666555 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05     0.063     161     262 ..     301     396 ..     293     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
                                    HHHHTTEE-S--STTSEEE-TT--EEE--GCC-EE..TTEEE-.----TTTS-HHHHHC-.XXXX--EEE-HHHHHHHHH CS
                      PF14531.1 161 nLqarglvhgkispdnflldekggvfLggftaLvr..agkkvvvsevekalaPpellaekggytsnttkmthkldaWqlG 238
                                     L+ +  v  +++p+n+lld +g + + + +  v+  +g+  +++   +++  pe+l+++        ++  + d W lG
  gi|159032059|ref|NP_061357.3| 301 DLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKipEGDLIRGRVGTVGYMAPEVLNNQ--------RYGLSPDYWGLG 372
                                    688999999*********************9888844688888888889**999999986........789999****** PP

                                    HHHHHHHHSS---GGGGGG-SSHH CS
                      PF14531.1 239 lviysiwclrlPftllaeeaseew 262
                                      iy +   + Pf   +e++++e 
  gi|159032059|ref|NP_061357.3| 373 CLIYEMIEGQSPFRGRKEKVKREE 396
                                    *************99999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       416  (0.0280494); expected 296.6 (0.02)
Passed bias filter:                      318  (0.0214416); expected 296.6 (0.02)
Passed Vit filter:                        24  (0.00161823); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.15u 0.69s 00:00:01.84 Elapsed: 00:00:00.59
# Mc/sec: 2610.33
//
Query:       gi|9910532|ref|NP_064342.1|  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-36  124.2   1.5    4.2e-36  123.6   1.5    1.3  1  PF00615.14  Regulator of G protein signaling domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.034   14.2   0.0    1.8  2  PF10774.4   Domain of unknown function (DUF4226)


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   1.5   5.7e-40   4.2e-36       1     118 []      84     199 ..      84     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 5.7e-40
                                  -HHHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS CS
                   PF00615.14   1 sleslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlek 82 
                                  ++++++++++gr+lFreFl++e+seenl Fwla+e++kk ++++ + +ka+ Iy+ y++  spke+ +d+++re ++++l +
  gi|9910532|ref|NP_064342.1|  84 NFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKAVEEKARMIYEDYISILSPKEVSLDSRVREVINRSLLD 165
                                  699******************************************************************************* PP

                                  ..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                   PF00615.14  83 aqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                    ps++++e+aq ++++l+++ds+p+Fl+s++y+++
  gi|9910532|ref|NP_064342.1| 166 --PSPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKAF 199
                                  ..*******************************986 PP

>> PF10774.4  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.5e-06     0.034      38      85 ..      56     107 ..      53     133 .. 0.84
   2 ?   -1.9   0.0      0.44   3.3e+03      67      84 ..     178     195 ..     172     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-06
                    PF10774.4  38 AhasavegrrrLdaiqqeieeavakqadalD....TpaGarefqkFLlaklr 85 
                                   h++  e+ + L++ q+ + ++v + ++  D    TpaG   f +FL++   
  gi|9910532|ref|NP_064342.1|  56 PHTTKMESIQVLEECQNPTADEVLSWSQNFDkmmkTPAGRNLFREFLRTEYS 107
                                  69999******************876665554444************99765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
                    PF10774.4  67 lDTpaGarefqkFLlakl 84 
                                  + T++    f +FL ++ 
  gi|9910532|ref|NP_064342.1| 178 IYTLMHRDSFPRFLNSQI 195
                                  568888889999*99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       949  (0.0639876); expected 296.6 (0.02)
Passed bias filter:                      399  (0.0269031); expected 296.6 (0.02)
Passed Vit filter:                        40  (0.00269705); expected 14.8 (0.001)
Passed Fwd filter:                         2  (0.000134853); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.69s 00:00:01.38 Elapsed: 00:00:00.66
# Mc/sec: 830.56
//
Query:       gi|190684703|ref|NP_036010.2|  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-35  119.8   0.3    1.8e-34  118.3   0.0    1.9  2  PF00615.14  Regulator of G protein signaling domain
    3.3e-17   62.0   0.0    1.2e-16   60.1   0.0    2.0  2  PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstr
    3.8e-14   52.1   0.1    9.5e-14   50.9   0.1    1.7  1  PF00631.17  GGL domain


Domain annotation for each model (and alignments):
>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.87   4.3e+03      46      82 ..     155     190 ..     137     213 .. 0.61
   2 !  118.3   0.0   3.6e-38   1.8e-34       3     118 .]     335     447 ..     333     447 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.87
                                    HHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS CS
                     PF00615.14  46 lskkakeIynkylapsspkelnidkklreeleknlek 82 
                                    + ++a++   +++ ++++ + ++dkk r+++e+++ +
  gi|190684703|ref|NP_036010.2| 155 RLQRAFARKWEFIFMQAEAQAKVDKK-RDKIERKILD 190
                                    44444444445555555566666554.3444444444 PP

  == domain 2  score: 118.3 bits;  conditional E-value: 3.6e-38
                                    HHHHCSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCS CS
                     PF00615.14   3 eslledqpgrslFreFlesefseenleFwlaveefkkakeqeelskkakeIynkylapsspkelnidkklreeleknlek 82 
                                    ++ l+d+ gr+ F +Flesefs+enl+Fwlave++k++ + +e+ ++++eI++++lap++p+ +n+d+k  +++++n+++
  gi|190684703|ref|NP_036010.2| 335 DEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKRR-PIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKE 413
                                    7889**********************************.***************************************** PP

                                    ..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                     PF00615.14  83 aqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                      p r +fe+aqe++++l+++dsyp+F++s  y++l
  gi|190684703|ref|NP_036010.2| 414 --PGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 447
                                    ..*******************************986 PP

>> PF00610.16  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.4e-20   1.2e-16       1      74 []      40     110 ..      40     110 .. 0.97
   2 ?   -2.2   0.0      0.71   3.5e+03      63      73 ..     414     428 ..     383     429 .. 0.69

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.4e-20
                                    SS-SCEEECTTEEECCE-HHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTTCEESSSSHHH--SSSSS-EEX CS
                     PF00610.16   1 gvkmkdrrkhlktykncftGseavdWLldnfedkiedreeAvelgqlLldqgliehvekrhsgFrdskqafYqf 74 
                                    g+++++ +  l++++++f+Gs++v+WL++n++  ied  eA++lg l+ ++g++ +++++  +++d+  +fY+f
  gi|190684703|ref|NP_036010.2|  40 GIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLT--IEDPVEALHLGTLMAAHGYFFPISDHVLTLKDD-GTFYRF 110
                                    799****************************9..***************************878888.*****9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.71
                                    H....--SSSSS-EE CS
                     PF00610.16  63 g....FrdskqafYq 73 
                                    +    F+d ++++Y 
  gi|190684703|ref|NP_036010.2| 414 PgrytFEDAQEHIYK 428
                                    245579999999996 PP

>> PF00631.17  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.1   1.9e-17   9.5e-14       4      67 ..     255     315 ..     253     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.9e-17
                     PF00631.17   4 klklkreieqLkkeLererikvSkaceeliaYce..stkDpllpevwgppsageNpwiekggccwi 67 
                                     + l ++i++++ +L+r+r+k+Sk++++l++Y+e   ++Dp+l ++ +p+    Npw ++++ +w 
  gi|190684703|ref|NP_036010.2| 255 EDELHQQIKYWQIQLDRHRLKMSKVADSLLSYTEqyVEYDPFLVPP-DPS----NPWLSDDTTFWE 315
                                    578999****************************************.999....********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       534  (0.0360057); expected 296.6 (0.02)
Passed bias filter:                      347  (0.0233969); expected 296.6 (0.02)
Passed Vit filter:                        38  (0.0025622); expected 14.8 (0.001)
Passed Fwd filter:                         3  (0.000202279); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.04u 0.67s 00:00:01.71 Elapsed: 00:00:00.56
# Mc/sec: 2186.15
//
Query:       gi|84000017|ref|NP_036068.2|  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-64  215.0   0.0    1.2e-63  214.6   0.0    1.1  1  PF00069.20  Protein kinase domain
    7.5e-36  123.5   0.0      1e-35  123.1   0.0    1.1  1  PF07714.12  Protein tyrosine kinase
    4.8e-19   68.5   0.0    1.7e-18   66.7   0.0    2.0  2  PF00615.14  Regulator of G protein signaling domain
    4.4e-05   22.6   0.0    7.2e-05   21.8   0.0    1.2  1  PF14531.1   Kinase-like


Domain annotation for each model (and alignments):
>> PF00069.20  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.0   3.3e-67   1.2e-63       2     260 .]     187     448 ..     186     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 214.6 bits;  conditional E-value: 3.3e-67
                                   EEEEEEEEESSEEEEEEEETTTEEEEEEEEEEGGGHHHHHHHHHHH.HHHHHHHHSSTTB--EEEEEEESSEEEEEEE--T CS
                    PF00069.20   2 elleklGsGsfGkVykakekktgkkvAvKilkkeeekskkektalr.ElkilkklnHpnivkllevfeekdelylvleyve 81 
                                   ++ + lG+G+fG+V+ ++ + tgk++A+K+l+k++ k++k ++ ++ E +il+k+n+ ++v+l  ++e+kd l+lvl +++
  gi|84000017|ref|NP_036068.2| 187 RQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALnEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN 267
                                   66799******************************999987765546********************************** PP

                                   TEBHHHHHH..HHSSB-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTSEEEE-SGTTSEEECEESS-STSS-S CS
                    PF00069.20  82 ggdlfdllk..kkgklseeeikkialqilegleylHsngiiHrDLKpeNiLldekgelkiaDFGlakkleksseklttlvg 160
                                   ggdl  ++    +  + e  + ++a +i++gle lH+++i++rDLKpeNiLld++g+++i+D+Gla +   ++++ + +vg
  gi|84000017|ref|NP_036068.2| 268 GGDLKFHIYhmGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVH-VPEGQTIKGRVG 347
                                   *****99996666778**************************************************97.99999******* PP

                                   -GGGS-HHHHHTSHHHHHHHHHHHHHHHHHHHHHSS-TTTTSCHHHHHHHHHHHHCSTSHHGGGGCSHHHHHHHHHHHHHT CS
                    PF00069.20 161 treYmAPEvllkakeytkkvDvWslGvilyelltgklpfsgeseedqlelirkilkkkleedepkssskseelkdlikkll 241
                                   t  YmAPEv++ ++ yt + D+W+lG++lye++ g+ pf++++++ ++e +++  k+  ee     ++ s+++++l+++ll
  gi|84000017|ref|NP_036068.2| 348 TVGYMAPEVVR-NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEY-T--DRFSSQARSLCSQLL 424
                                   ***********.******************************88888888877777433333.3..34459********** PP

                                   -SSGGGSTT.....HHHHHCSGGH CS
                    PF00069.20 242 ekdpakRlt.....aeeilkhpwl 260
                                    kdpa+Rl      a+e+++hp++
  gi|84000017|ref|NP_036068.2| 425 SKDPAERLGcrgggAREVKEHPLF 448
                                   ********9999999999999976 PP

>> PF07714.12  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.0   2.7e-39     1e-35       4     249 ..     189     431 ..     186     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 2.7e-39
                                   EEEEEEESSEEEEEEEEETTTTSTEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTC-BTTB--EEEEEESSSSEEEEEE- CS
                    PF07714.12   4 gkklGeGafGeVvegtlkgekekkevkVavKtl.keeaeeee.keefleeakimkklkhenivkllgvctkeepllivtey 82 
                                    + lG+G fGeV+ ++++     +    a K+l k++ ++++ +++ l+e +i++k++ + +v+l  ++ +++ l++v+ +
  gi|84000017|ref|NP_036068.2| 189 YRVLGKGGFGEVCACQVR----ATGKMYACKKLeKKRIKKRKgEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL 265
                                   689***************....777778999994334444442566788******************************** PP

                                   -TTEBHHHHHHHTHTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEE-SCTTGEECTTTSEEEETT CS
                    PF07714.12  83 vegGdLlkfLrkkekekltledllsfalqiAkGmeyLeskklvHrdLaarNvLleenkvvkisDfGLardiekddyykkke 163
                                   ++gGdL+ ++ +  +  +   + + +a++i+ G+e L+++++v rdL   N+Ll+++++++isD GLa ++    + ++ +
  gi|84000017|ref|NP_036068.2| 266 MNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHV---PEGQTIK 343
                                   *************9*********************************************************...4445556 PP

                                   TSECGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS-GTTTTSHHHH...HHHHHHTTEES-BBTTSBHHHHHHHHHH CS
                    PF07714.12 164 kaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglsnee...vleklkegkrlekpencpeelyelmkqC 241
                                   ++   v +mapE+++++++t   D W+ G ll+E++  g+sp+++ +++     +e+l ++   e  +  +++  +l +q 
  gi|84000017|ref|NP_036068.2| 344 GRVGTVGYMAPEVVRNERYTFSPDWWALGCLLYEMIA-GQSPFQQRKKKIkreEVERLVKEVAEEYTDRFSSQARSLCSQL 423
                                   77899*******************************9.99**887755430113344444444555566777777777777 PP

                                   T-SSGGGS CS
                    PF07714.12 242 weeepekR 249
                                   ++++p++R
  gi|84000017|ref|NP_036068.2| 424 LSKDPAER 431
                                   77777777 PP

>> PF00615.14  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   4.7e-22   1.7e-18       2     118 .]      53     170 ..      52     170 .. 0.96
   2 ?   -2.0   0.1      0.98   3.6e+03      42      64 ..     393     415 ..     385     428 .. 0.61

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 4.7e-22
                                   HHHHHCSHH.HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHHH CS
                    PF00615.14   2 leslledqp.grslFreFlesefse.enleFwlaveefkkakeqeelskkakeIynkylapsspkel.nidkklreelekn 79 
                                   ++sl+e+qp gr lFreF+ ++ +  ++ +F++ v e++ + ++e++++  +++++++l++  p  + +++++l+++++++
  gi|84000017|ref|NP_036068.2|  53 YHSLCERQPiGRLLFREFCATRPELtRCTAFLDGVSEYEVT-PDEKRKACGRRLMQNFLSHTGPDLIpEVPRQLVSNCAQR 132
                                   689******************55559***************.*************************************** PP

                                   HCS..TTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH CS
                    PF00615.14  80 lekaqpsrklfeeaqeevfellekdsypkFlkselylrl 118
                                   le+  p+++lf+e+ + ++e+l++ ++ ++l+s +++r+
  gi|84000017|ref|NP_036068.2| 133 LEQ-GPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRF 170
                                   ***.********************************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.98
                                   HHHHHHHHHHHHHHHHTSTTSTT CS
                    PF00615.14  42 eqeelskkakeIynkylapsspk 64 
                                   ++ee+ + +ke+ ++y ++ s++
  gi|84000017|ref|NP_036068.2| 393 KREEVERLVKEVAEEYTDRFSSQ 415
                                   66777777777777777655544 PP

>> PF14531.1  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.9e-08   7.2e-05     161     272 ..     301     406 ..     298     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-08
                                   HHHHTTEE-S--STTSEEE-TT--EEE--GCC-EE..TTEEE-.----TTTS-HHHHHC-.XXXX--EEE-HHHHHHHHHH CS
                     PF14531.1 161 nLqarglvhgkispdnflldekggvfLggftaLvr..agkkvvvsevekalaPpellaekggytsnttkmthkldaWqlGl 239
                                    L+ + +v  +++p+n+lld +g + + + +  v   +g+  +++   +++  pe++++         ++t++ d W+lG 
  gi|84000017|ref|NP_036068.2| 301 DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHvpEGQTIKGRVGTVGYMAPEVVRNE--------RYTFSPDWWALGC 373
                                   69999************************9655541178888877777999888888775........79*********** PP

                                   HHHHHHHSS---GGGGGG-SSHHHHTT-----H CS
                     PF14531.1 240 viysiwclrlPftllaeeaseewkfklckkvpe 272
                                    +y +   + Pf + ++++++e   +l+k+v e
  gi|84000017|ref|NP_036068.2| 374 LLYEMIAGQSPFQQRKKKIKREEVERLVKEVAE 406
                                   *******************99954444556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       506  (0.0341177); expected 296.6 (0.02)
Passed bias filter:                      416  (0.0280494); expected 296.6 (0.02)
Passed Vit filter:                        41  (0.00276448); expected 14.8 (0.001)
Passed Fwd filter:                         4  (0.000269705); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.74s 00:00:01.98 Elapsed: 00:00:00.61
# Mc/sec: 2396.37
//
[ok]
