#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
HD_3                 PF13023.1    165 sp|Q8ZDK3|5DNU_YERPE -            197   7.5e-19   68.0   1.0   1   1   1.9e-22   9.5e-19   67.7   1.0     2   146     9   159     8   174 0.81 HD domain
HD_2                 PF12917.2    215 sp|Q8ZDK3|5DNU_YERPE -            197     4e-13   49.6   0.2   1   1     9e-17   4.5e-13   49.4   0.2     4   188     2   183     1   196 0.88 HD containing hydrolase-like enzyme
HD                   PF01966.17   122 sp|Q8ZDK3|5DNU_YERPE -            197   5.7e-06   26.3   1.0   1   1   1.9e-09   9.2e-06   25.6   1.0     2    77    29   101    28   141 0.67 HD domain
Lactonase            PF10282.4    345 sp|Q8ZGX4|6PGL_YERPE -            334   4.1e-92  308.9   0.0   1   1   1.3e-95   4.8e-92  308.6   0.0     2   344     5   327     4   328 0.96 Lactonase, 7-bladed beta-propeller
SGL                  PF08450.7    246 sp|Q8ZGX4|6PGL_YERPE -            334   0.00011   21.7   0.0   2   2   4.4e-06     0.016   14.5   0.0   130   223   225   318    76   333 0.80 SMP-30/Gluconolaconase/LRE-like region
DUF1513              PF07433.6    305 sp|Q8ZGX4|6PGL_YERPE -            334     0.022   13.6   0.0   2   2   0.00013      0.49    9.2   0.0   166   278   179   296   155   319 0.78 Protein of unknown function (DUF1513)
HlyD                 PF00529.15   305 sp|Q8ZAU9|AAEA_YERPE -            311     2e-39  135.7   8.7   1   2   8.3e-17   2.1e-13   50.2   3.3     2    71    48   110    47   127 0.78 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|Q8ZAU9|AAEA_YERPE -            311     2e-39  135.7   8.7   2   2     8e-29     2e-25   89.7   2.2   121   305   109   286   100   286 0.88 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|Q8ZAU9|AAEA_YERPE -            311   6.3e-19   67.3   2.5   1   2   4.2e-19     1e-15   57.0   2.1     2    50    47    95    46    95 0.97 Biotin-lipoyl like
HlyD_3               PF13437.1    105 sp|Q8ZAU9|AAEA_YERPE -            311     4e-17   62.4   0.3   1   2   1.4e-05     0.033   14.5   0.1     6    54    54   104    49   112 0.89 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|Q8ZAU9|AAEA_YERPE -            311     4e-17   62.4   0.3   2   2   3.9e-15   9.7e-12   45.1   0.0     1    96   156   251   156   263 0.89 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|Q8ZAU9|AAEA_YERPE -            311     6e-15   55.2   0.1   1   1   3.2e-18     8e-15   54.8   0.1    21   273    47   271    39   275 0.83 HlyD family secretion protein
Biotin_lipoyl        PF00364.17    74 sp|Q8ZAU9|AAEA_YERPE -            311    0.0023   17.5   0.0   1   2   0.00019      0.47   10.1   0.1    47    74    51    78    43    78 0.86 Biotin-requiring enzyme
DUF2524              PF10732.4     84 sp|Q8ZAU9|AAEA_YERPE -            311      0.12   12.4   2.9   1   2   6.8e-05      0.17   12.0   0.9    43    81    84   122    79   124 0.91 Protein of unknown function (DUF2524)
FUSC                 PF04632.7    650 sp|Q8ZAU8|AAEB_YERPE -            651  1.7e-157  525.6  17.8   1   1  3.9e-161  1.9e-157  525.5  17.8     1   649     8   649     8   651 0.97 Fusaric acid resistance protein family
FUSC_2               PF13515.1    128 sp|Q8ZAU8|AAEB_YERPE -            651   2.7e-14   53.2  36.8   1   2   8.3e-17   4.1e-13   49.3  14.9     2   127    22   160    19   161 0.83 Fusaric acid resistance protein-like
ALMT                 PF11744.3    406 sp|Q8ZAU8|AAEB_YERPE -            651   0.00035   19.3   2.8   1   2     7e-08   0.00035   19.3   2.8    42   225    35   220     7   301 0.78 Aluminium activated malate transporter
DUF1656              PF07869.7     58 sp|Q8ZAV0|AAEX_YERPE -             67     5e-22   77.4   6.8   1   1   3.8e-26   5.7e-22   77.2   6.8     2    57     6    61     5    62 0.97 Protein of unknown function (DUF1656)
AMP-binding          PF00501.23   417 sp|Q74RZ6|AAS_YERPE  -            718   1.1e-69  234.9   0.0   1   1   2.2e-73   1.6e-69  234.3   0.0    20   416   230   619   214   620 0.80 AMP-binding enzyme
Acyltransferase      PF01553.16   132 sp|Q74RZ6|AAS_YERPE  -            718   4.2e-15   55.3   0.0   1   1   1.2e-18   9.3e-15   54.2   0.0     8   130    23   136    15   138 0.92 Acyltransferase
ACCA                 PF03255.9    145 sp|Q8ZH52|ACCA_YERPE -            319   3.3e-66  221.3   0.1   1   1     7e-70   5.2e-66  220.6   0.1     2   145     5   151     4   151 0.97 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
Carboxyl_trans       PF01039.17   493 sp|Q8ZH52|ACCA_YERPE -            319   4.8e-19   68.0   0.2   1   1   7.9e-23   5.8e-19   67.8   0.2   279   425    94   246    59   292 0.84 Carboxyl transferase domain
Carboxyl_trans       PF01039.17   493 sp|Q0WDC3|ACCD_YERPE -            304   1.1e-18   66.8   0.0   1   1     7e-22   1.5e-18   66.4   0.0    26   179    93   241    55   296 0.89 Carboxyl transferase domain
zf-TFIIB             PF13453.1     41 sp|Q0WDC3|ACCD_YERPE -            304     0.014   14.5   1.2   2   2   3.4e-05     0.071   12.3   0.1     2    17    48    63    47    75 0.76 Transcription factor zinc-finger
DZR                  PF12773.2     50 sp|Q0WDC3|ACCD_YERPE -            304     0.046   13.5   0.3   1   1     4e-05     0.085   12.6   0.3    12    43    26    59    18    62 0.77 Double zinc ribbon
Auto_anti-p27        PF06677.7     41 sp|Q0WDC3|ACCD_YERPE -            304     0.097   12.4   0.5   1   1   9.8e-05      0.21   11.3   0.5    19    41    28    52    26    52 0.93 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
OrfB_Zn_ribbon       PF07282.6     69 sp|Q0WDC3|ACCD_YERPE -            304       0.1   12.2   1.4   1   1   0.00013      0.28   10.8   1.4    30    56    28    55    27    58 0.92 Putative transposase DNA-binding domain
zf-FPG_IleRS         PF06827.9     30 sp|Q0WDC3|ACCD_YERPE -            304      0.11   12.1   1.4   1   1   9.5e-05       0.2   11.3   1.4     3    28    28    52    27    54 0.94 Zinc finger found in FPG and IleRS
AceK                 PF06315.6    562 sp|Q8ZAR7|ACEK_YERPE -            575  9.7e-254  842.8   3.4   1   1  7.4e-258  1.1e-253  842.6   3.4     1   562     9   568     9   568 0.99 Isocitrate dehydrogenase kinase/phosphatase (AceK)
Acetate_kinase       PF00871.12   388 sp|Q8ZDJ6|ACKA_YERPE -            400  3.1e-171  569.1   0.0   1   1  4.9e-175  3.6e-171  568.9   0.0     2   388     6   393     5   393 0.98 Acetokinase family
BcrAD_BadFG          PF01869.15   271 sp|Q8ZDJ6|ACKA_YERPE -            400     0.029   13.6   0.0   1   1   7.7e-06     0.057   12.7   0.0   186   240   290   344   253   350 0.87 BadF/BadG/BcrA/BcrD ATPase family
DUF479               PF04336.7    106 sp|Q8ZC31|ACPH_YERPE -            193   1.7e-33  114.8   1.9   1   1   3.5e-37   2.6e-33  114.2   1.9     1   105    81   186    81   187 0.99 Protein of unknown function, DUF479
MerE                 PF05052.7     75 sp|Q8ZC31|ACPH_YERPE -            193     0.071   13.0   0.0   1   1   2.2e-05      0.17   11.9   0.0     7    43   113   150   109   166 0.83 MerE protein
ACPS                 PF01648.15   115 sp|Q8ZCP5|ACPS_YERPE -            126   1.4e-24   86.1   0.0   1   1   2.1e-28   1.6e-24   85.9   0.0     1   115     5   122     5   122 0.96 4'-phosphopantetheinyl transferase superfamily
Tecti-min-caps       PF09300.5     84 sp|Q8ZCP5|ACPS_YERPE -            126      0.02   14.6   0.1   1   1   4.7e-06     0.035   13.8   0.1    40    77    41    77    32    85 0.84 Tectiviridae, minor capsid
AMP-binding          PF00501.23   417 sp|Q8D1G8|ACSA_YERPE -            652   6.5e-95  317.9   0.0   1   1   1.1e-98     8e-95  317.6   0.0     2   416    83   522    82   523 0.84 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|Q8D1G8|ACSA_YERPE -            652   1.8e-22   80.0   0.0   1   1   5.9e-26   4.3e-22   78.8   0.0     1    73   531   609   531   609 0.90 AMP-binding enzyme C-terminal domain
SSF                  PF00474.12   406 sp|Q8ZJ73|ACTP_YERPE -            551  2.4e-128  428.2  38.3   1   1  2.2e-132  3.3e-128  427.7  38.3     1   406    64   470    64   470 1.00 Sodium:solute symporter family
AA_permease_2        PF13520.1    426 sp|Q8ZGS9|ADIC_YERPE -            444   1.8e-51  175.0  51.6   1   1   3.2e-55   2.4e-51  174.6  51.6     2   401     9   401     8   432 0.85 Amino acid permease
AA_permease          PF00324.16   478 sp|Q8ZGS9|ADIC_YERPE -            444   1.2e-33  116.1  45.5   1   1   1.6e-37   1.2e-33  116.1  45.5     2   377    13   359    12   401 0.90 Amino acid permease
PAD_porph            PF04371.10   329 sp|Q8ZHG0|AGUA_YERPE -            365  4.4e-140  466.3   0.0   1   1  6.8e-144    5e-140  466.2   0.0     1   329    16   363    16   363 0.99 Porphyromonas-type peptidyl-arginine deiminase
Amidinotransf        PF02274.12   281 sp|Q8ZHG0|AGUA_YERPE -            365    0.0047   16.0   0.0   1   1   4.1e-06      0.03   13.3   0.0   244   279   325   362   129   363 0.60 Amidinotransferase
DUF1144              PF06610.8    143 sp|Q0WJC2|ALAE_YERPE -            148   1.7e-70  235.3   7.8   1   1   3.7e-74   1.8e-70  235.2   7.8     4   143     5   145     1   145 0.97 Protein of unknown function (DUF1144)
Ala_racemase_N       PF01168.15   218 sp|Q8ZJ10|ALR1_YERPE -            359   1.1e-63  214.6   0.4   1   1   2.8e-67   1.4e-63  214.3   0.4     1   218     8   219     8   219 0.95 Alanine racemase, N-terminal domain
Ala_racemase_C       PF00842.16   129 sp|Q8ZJ10|ALR1_YERPE -            359   1.8e-37  127.6   0.0   1   1   5.9e-41   2.9e-37  126.9   0.0     1   128   233   356   233   357 0.97 Alanine racemase, C-terminal domain
FCD                  PF07729.7    125 sp|Q8ZJ10|ALR1_YERPE -            359      0.13   12.5   2.7   2   2   9.4e-05      0.46   10.8   0.1    23   112    96   186    87   191 0.79 FCD domain
Ala_racemase_C       PF00842.16   129 sp|Q8ZFL4|ALR2_YERPE -            394   2.1e-36  124.2   0.0   1   1   7.5e-40   3.7e-36  123.3   0.0     1   128   265   392   265   393 0.98 Alanine racemase, C-terminal domain
Ala_racemase_N       PF01168.15   218 sp|Q8ZFL4|ALR2_YERPE -            394   3.5e-34  118.2   0.3   1   1   8.9e-38   4.4e-34  117.9   0.3     1   216    34   255    34   257 0.88 Alanine racemase, N-terminal domain
QRPTase_C            PF01729.14   169 sp|Q8ZFL4|ALR2_YERPE -            394    0.0018   17.8   0.1   1   1   7.8e-07    0.0039   16.7   0.1    21   128    42   149    33   172 0.78 Quinolinate phosphoribosyl transferase, C-terminal domain
Peptidase_M17        PF00883.16   311 sp|Q8ZBH3|AMPA_YERPE -            503  1.9e-130  434.3   0.1   2   2  4.2e-134  3.1e-130  433.5   0.0     2   310   185   490   184   491 0.98 Cytosol aminopeptidase family, catalytic domain
Peptidase_M17_N      PF02789.12   126 sp|Q8ZBH3|AMPA_YERPE -            503   5.2e-31  107.0   0.0   1   2   2.8e-34   2.1e-30  105.0   0.0     1   126    19   147    19   147 0.98 Cytosol aminopeptidase family, N-terminal domain
UPF0075              PF03702.9    364 sp|Q0WEF0|ANMK_YERPE -            370    5e-159  529.0   0.0   1   1  3.9e-163  5.8e-159  528.8   0.0     2   363     5   366     4   367 0.99 Uncharacterised protein family (UPF0075)
Metallophos          PF00149.23   200 sp|Q8ZIK7|APAH_YERPE -            289   2.1e-19   69.7   0.1   1   1   3.9e-23   2.9e-19   69.2   0.1     3   169     3   132     1   281 0.89 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|Q8ZIK7|APAH_YERPE -            289   1.6e-07   31.2   0.0   1   1   2.9e-11   2.1e-07   30.8   0.0     1    59     1    79     1   160 0.68 Calcineurin-like phosphoesterase superfamily domain
Pribosyltran         PF00156.22   125 sp|Q8ZC94|APT_YERPE  -            187   1.9e-22   79.3   0.0   1   1   3.3e-26   2.4e-22   78.9   0.0     2   124    37   159    36   160 0.96 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|Q8ZC94|APT_YERPE  -            187    0.0021   17.2   0.0   1   1   4.2e-07    0.0031   16.7   0.0   120   152   122   154    92   174 0.80 Uracil phosphoribosyltransferase
Arabinose_Isome      PF02610.10   359 sp|P58540|ARAA_YERPE -            500  4.4e-184  611.4   0.4   1   1    1e-187  5.1e-184  611.2   0.4     1   359     1   359     1   359 1.00 L-arabinose isomerase
Arabinose_Iso_C      PF11762.3    115 sp|P58540|ARAA_YERPE -            500   3.4e-49  165.2   0.0   1   1   1.3e-52   6.3e-49  164.3   0.0     1   115   362   476   362   476 0.99 L-arabinose isomerase C-terminal domain
OpuAC                PF04069.7    257 sp|P58540|ARAA_YERPE -            500      0.04   13.2   0.2   1   1   1.6e-05     0.081   12.2   0.0    25    63   199   240   184   295 0.78 Substrate binding domain of ABC-type glycine betaine transport system
FGGY_C               PF02782.11   198 sp|P58543|ARAB_YERPE -            563   2.4e-35  121.9   0.2   1   1   1.1e-38     4e-35  121.2   0.2     4   198   297   506   294   506 0.89 FGGY family of carbohydrate kinases, C-terminal domain
FGGY_N               PF00370.16   245 sp|P58543|ARAB_YERPE -            563   1.1e-11   44.5   0.0   1   2   3.7e-10   1.4e-06   27.8   0.0     2   118     9   144     8   195 0.80 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_N               PF00370.16   245 sp|P58543|ARAB_YERPE -            563   1.1e-11   44.5   0.0   2   2     6e-06     0.022   14.0   0.0   199   245   240   286   230   286 0.89 FGGY family of carbohydrate kinases, N-terminal domain
HSP70                PF00012.15   602 sp|P58543|ARAB_YERPE -            563    0.0028   15.6   0.2   1   1   1.3e-06    0.0048   14.8   0.2   328   381   456   509   442   515 0.84 Hsp70 protein
MCM_N                PF14551.1    121 sp|P58543|ARAB_YERPE -            563     0.056   13.9   0.0   1   1   2.5e-05     0.092   13.2   0.0    49    77    53    91    20   139 0.77 MCM N-terminal domain
ABC_tran             PF00005.22   137 sp|Q0WER5|ARAG_YERPE -            523   2.4e-56  189.8   0.1   1   2   2.3e-37     2e-34  118.8   0.0     1   137    35   184    35   184 0.92 ABC transporter
ABC_tran             PF00005.22   137 sp|Q0WER5|ARAG_YERPE -            523   2.4e-56  189.8   0.1   2   2   5.2e-22   4.5e-19   69.1   0.0     3   136   286   439   284   440 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|Q0WER5|ARAG_YERPE -            523     2e-16   60.8   1.0   1   3   5.4e-07   0.00047   20.2   0.2     2    22    48    68    47   104 0.73 AAA domain
AAA_21               PF13304.1    303 sp|Q0WER5|ARAG_YERPE -            523     2e-16   60.8   1.0   2   3   1.4e-07   0.00012   22.1   0.0   227   297   146   213   116   215 0.82 AAA domain
AAA_21               PF13304.1    303 sp|Q0WER5|ARAG_YERPE -            523     2e-16   60.8   1.0   3   3   1.5e-05     0.013   15.4   0.0   234   296   409   468   356   469 0.87 AAA domain
AAA_15               PF13175.1    415 sp|Q0WER5|ARAG_YERPE -            523   8.8e-08   31.6   0.0   1   3   3.4e-06    0.0029   16.7   0.0     9    56    22    88    20   116 0.74 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q0WER5|ARAG_YERPE -            523   8.8e-08   31.6   0.0   2   3   0.00098      0.85    8.5   0.0   368   397   170   201   128   214 0.75 AAA ATPase domain
DUF258               PF03193.11   161 sp|Q0WER5|ARAG_YERPE -            523   4.4e-06   25.9   0.6   1   2   1.5e-07   0.00013   21.1   0.0    26    71    35    81    26    97 0.83 Protein of unknown function, DUF258
UPF0079              PF02367.12   123 sp|Q0WER5|ARAG_YERPE -            523   9.8e-05   21.9   1.3   1   2   0.00044      0.38   10.3   0.0    11    39    41    69    35    79 0.83 Uncharacterised P-loop hydrolase UPF0079
UPF0079              PF02367.12   123 sp|Q0WER5|ARAG_YERPE -            523   9.8e-05   21.9   1.3   2   2   0.00055      0.48   10.0   0.3     8    37   287   316   280   324 0.84 Uncharacterised P-loop hydrolase UPF0079
AAA_29               PF13555.1     62 sp|Q0WER5|ARAG_YERPE -            523   0.00078   18.9   0.5   1   1   3.6e-06    0.0031   16.9   0.0    18    40    41    62    34    73 0.83 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|Q0WER5|ARAG_YERPE -            523    0.0037   16.5   0.2   1   1   3.9e-05     0.034   13.3   0.1    25   213    46   229    36   235 0.78 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|Q0WER5|ARAG_YERPE -            523     0.024   14.9   0.1   1   1   5.2e-05     0.045   14.0   0.1    15    37    38    63    27    67 0.81 AAA domain
AAA_16               PF13191.1    185 sp|Q0WER5|ARAG_YERPE -            523     0.044   13.7   1.0   1   1   0.00021      0.19   11.7   0.1    23    81    44   102    34   259 0.54 AAA ATPase domain
AAA_22               PF13401.1    131 sp|Q0WER5|ARAG_YERPE -            523     0.069   13.2   1.5   1   1     0.001      0.91    9.6   0.0     5    28    46    69    42   112 0.77 AAA domain
AAA_25               PF13481.1    194 sp|Q0WER5|ARAG_YERPE -            523       0.1   11.9   0.1   1   1    0.0003      0.26   10.6   0.1    31    59    43    73    33    97 0.83 AAA domain
VirE                 PF05272.6    198 sp|Q0WER5|ARAG_YERPE -            523      0.15   11.5   0.0   1   1    0.0003      0.26   10.7   0.0    49    76    42    69    38    85 0.88 Virulence-associated protein E
ATP-synt_ab          PF00006.20   215 sp|Q0WER5|ARAG_YERPE -            523      0.15   11.5   0.5   1   1   0.00066      0.58    9.6   0.1     7    38    37    68    31    84 0.87 ATP synthase alpha/beta family, nucleotide-binding domain
AA_kinase            PF00696.23   242 sp|Q8ZH86|ARGA_YERPE -            441   2.2e-26   92.8   0.2   1   1     1e-29     3e-26   92.4   0.2     1   240    25   266    25   268 0.91 Amino acid kinase family
Acetyltransf_1       PF00583.19    83 sp|Q8ZH86|ARGA_YERPE -            441   1.3e-09   37.8   0.0   1   1   1.8e-12   5.4e-09   35.9   0.0     2    83   340   413   339   413 0.92 Acetyltransferase (GNAT) family
Acetyltransf_7       PF13508.1     79 sp|Q8ZH86|ARGA_YERPE -            441   4.1e-08   33.2   0.0   2   2   1.2e-10   3.6e-07   30.2   0.0     3    78   334   413   332   414 0.82 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|Q8ZH86|ARGA_YERPE -            441   1.6e-05   25.0   0.0   2   2   4.4e-08   0.00013   22.0   0.0    35   117   325   412   309   412 0.83 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|Q8ZH86|ARGA_YERPE -            441   0.00029   20.7   0.0   1   1   1.8e-07   0.00053   19.8   0.0     2   126   297   414   296   415 0.82 Acetyltransferase (GNAT) domain
AA_kinase            PF00696.23   242 sp|Q8ZA87|ARGB_YERPE -            258   7.6e-38  130.4   4.3   1   1   1.2e-41   8.6e-38  130.2   4.3     3   241     5   235     3   236 0.94 Amino acid kinase family
Smr                  PF01713.16    83 sp|Q8ZA87|ARGB_YERPE -            258     0.025   14.7   0.0   1   1   2.7e-05       0.2   11.8   0.0     7    37    15    45    13   105 0.88 Smr domain
Semialdhyde_dh       PF01118.19   121 sp|Q8ZA86|ARGC_YERPE -            334   1.4e-33  115.7   0.0   1   1     1e-36   2.2e-33  115.1   0.0     3   121     5   146     3   146 0.95 Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC      PF02774.13   184 sp|Q8ZA86|ARGC_YERPE -            334   1.2e-14   54.6   0.0   1   1   8.7e-18   1.8e-14   53.9   0.0     1   184   163   311   163   311 0.92 Semialdehyde dehydrogenase, dimerisation domain
NAD_binding_10       PF13460.1    183 sp|Q8ZA86|ARGC_YERPE -            334    0.0015   18.6   0.1   1   1   1.2e-06    0.0025   17.8   0.1     2    75     5    86     5   103 0.85 NADH(P)-binding
GFO_IDH_MocA         PF01408.17   120 sp|Q8ZA86|ARGC_YERPE -            334    0.0022   18.5   0.0   1   1   3.2e-06    0.0068   16.9   0.0     2    90     3   100     2   101 0.67 Oxidoreductase family, NAD-binding Rossmann fold
DUF4459              PF14673.1    159 sp|Q8ZA86|ARGC_YERPE -            334     0.014   15.0   0.0   1   1   1.1e-05     0.024   14.3   0.0    67   119   256   306   249   312 0.84 Domain of unknown function (DUF4459)
Epimerase            PF01370.16   236 sp|Q8ZA86|ARGC_YERPE -            334     0.052   12.9   0.0   1   1   5.3e-05      0.11   11.8   0.0     2    75     5    82     4    94 0.63 NAD dependent epimerase/dehydratase family
DapB_N               PF01113.15   124 sp|Q8ZA86|ARGC_YERPE -            334     0.055   13.3   0.0   1   1     5e-05      0.11   12.4   0.0     4    84     5    89     2    99 0.69 Dihydrodipicolinate reductase, N-terminus
Aminotran_3          PF00202.16   339 sp|P59324|ARGD_YERPE -            405  1.4e-120  402.2   0.2   1   1  2.2e-124  1.7e-120  401.9   0.2     3   338    28   346    26   347 0.99 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|P59324|ARGD_YERPE -            405     5e-05   22.4   0.0   1   1   9.7e-09   7.2e-05   21.8   0.0   109   309   159   340   131   370 0.84 Aminotransferase class I and II
Peptidase_M20        PF01546.23   189 sp|Q8ZA85|ARGE_YERPE -            389   9.6e-36  123.0   0.0   1   1   4.3e-39   1.3e-35  122.6   0.0     1   187    81   382    81   384 0.95 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|Q8ZA85|ARGE_YERPE -            389   1.3e-25   89.3   0.0   1   1   7.1e-29   2.1e-25   88.6   0.0     2   109   183   292   182   295 0.90 Peptidase dimerisation domain
Peptidase_M28        PF04389.12   179 sp|Q8ZA85|ARGE_YERPE -            389    0.0017   18.1   0.0   1   2   4.8e-06     0.014   15.1   0.0     3    74    80   163    78   173 0.77 Peptidase family M28
Peptidase_M42        PF05343.9    292 sp|Q8ZA85|ARGE_YERPE -            389     0.013   14.2   0.0   1   2   1.1e-05     0.034   12.9   0.0   140   187   123   170   101   195 0.85 M42 glutamyl aminopeptidase
LysE                 PF01810.13   191 sp|Q8ZHH6|ARGO_YERPE -            205   1.3e-53  181.1  17.2   1   1   1.9e-57   1.4e-53  180.9  17.2     2   191    14   202    13   202 0.98 LysE type translocator
DUF485               PF04341.7     91 sp|Q8ZHH6|ARGO_YERPE -            205    0.0047   16.5   1.4   3   3   6.4e-07    0.0047   16.5   1.4    14    64   145   195   139   201 0.79 Protein of unknown function, DUF485
Arg_repressor        PF01316.16    70 sp|Q8ZBA2|ARGR_YERPE -            156   1.7e-24   85.1   0.5   1   2   5.6e-28   2.8e-24   84.4   0.1     2    69     6    74     5    75 0.96 Arginine repressor, DNA binding domain
Arg_repressor_C      PF02863.13    70 sp|Q8ZBA2|ARGR_YERPE -            156   8.3e-23   79.6   0.0   1   1   2.5e-26   1.2e-22   79.1   0.0     2    69    82   150    81   151 0.96 Arginine repressor, C-terminal domain
Arc_PepC             PF06819.6    111 sp|Q8ZBA2|ARGR_YERPE -            156     0.051   13.5   0.2   1   2   2.9e-05      0.14   12.0   0.1    55    96     6    46     3    57 0.85 Archaeal Peptidase A24 C-terminal Domain
Lyase_1              PF00206.15   312 sp|Q8ZA88|ARLY_YERPE -            457   1.5e-96  323.3   0.0   1   2   1.2e-99   9.3e-96  320.6   0.0     1   312     6   301     6   301 0.99 Lyase
ASL_C2               PF14698.1     70 sp|Q8ZA88|ARLY_YERPE -            457   2.5e-26   91.5   0.1   1   1   8.4e-30   6.3e-26   90.2   0.1     1    69   364   432   364   433 0.97 Argininosuccinate lyase C-terminal
Epimerase            PF01370.16   236 sp|Q8ZDX8|ARNA_YERPE -            667   1.5e-39  135.8   0.0   1   1   1.2e-42   2.3e-39  135.2   0.0     1   236   318   566   318   566 0.92 NAD dependent epimerase/dehydratase family
Formyl_trans_N       PF00551.14   181 sp|Q8ZDX8|ARNA_YERPE -            667   1.1e-25   90.2   0.0   1   1   9.1e-29   1.7e-25   89.6   0.0    29   177    25   173     2   177 0.87 Formyl transferase
Formyl_trans_C       PF02911.13   100 sp|Q8ZDX8|ARNA_YERPE -            667   1.2e-17   63.7   0.0   1   1   1.2e-20   2.3e-17   62.9   0.0     3    87   202   284   200   296 0.90 Formyl transferase, C-terminal domain
3Beta_HSD            PF01073.14   280 sp|Q8ZDX8|ARNA_YERPE -            667   0.00011   21.0   0.0   1   1   8.2e-08   0.00015   20.5   0.0     1   130   319   445   319   495 0.78 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4        PF07993.7    249 sp|Q8ZDX8|ARNA_YERPE -            667     0.021   13.7   0.0   1   1   0.00047      0.87    8.4   0.0     3   195   322   490   320   524 0.59 Male sterility protein
NAD_binding_10       PF13460.1    183 sp|Q8ZDX8|ARNA_YERPE -            667     0.031   14.2   0.0   1   1   3.4e-05     0.063   13.2   0.0     1   103   318   437   318   527 0.72 NADH(P)-binding
RmlD_sub_bind        PF04321.12   287 sp|Q8ZDX8|ARNA_YERPE -            667     0.048   12.5   0.0   1   1   4.4e-05     0.082   11.7   0.0     2   117   317   448   316   481 0.86 RmlD substrate binding domain
TrkA_N               PF02254.13   116 sp|Q8ZDX8|ARNA_YERPE -            667     0.064   13.2   0.0   1   1   9.3e-05      0.17   11.8   0.0     2    67   319   387   318   429 0.83 TrkA-N domain
DegT_DnrJ_EryC1      PF01041.12   363 sp|Q93PE0|ARNB_YERPE -            384    7e-124  413.5   0.0   1   1  3.2e-127  7.9e-124  413.3   0.0     2   362    11   373    10   374 0.96 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_1_2        PF00155.16   363 sp|Q93PE0|ARNB_YERPE -            384   3.4e-09   36.1   0.0   1   1   2.4e-12   5.9e-09   35.3   0.0    47   194    36   161    19   175 0.91 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|Q93PE0|ARNB_YERPE -            384     1e-07   31.4   0.3   1   1   9.2e-11   2.3e-07   30.2   0.3    27   229    31   216    15   294 0.76 Beta-eliminating lyase
SLA_LP_auto_ag       PF05889.8    389 sp|Q93PE0|ARNB_YERPE -            384   5.6e-06   25.0   0.0   1   1   3.3e-09   8.2e-06   24.5   0.0    60   199    37   162    32   190 0.85 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
Cys_Met_Meta_PP      PF01053.15   386 sp|Q93PE0|ARNB_YERPE -            384   1.5e-05   23.4   0.0   1   1   9.2e-09   2.3e-05   22.8   0.0    54   179    32   156    30   166 0.82 Cys/Met metabolism PLP-dependent enzyme
OKR_DC_1             PF01276.15   417 sp|Q93PE0|ARNB_YERPE -            384    0.0048   15.5   0.0   1   1   2.6e-06    0.0065   15.0   0.0    57   144    23   111     4   163 0.87 Orn/Lys/Arg decarboxylase, major domain
Glycos_transf_2      PF00535.21   169 sp|Q8ZDX7|ARNC_YERPE -            327   1.7e-28   99.4   0.0   1   1   7.1e-32   2.6e-28   98.8   0.0     1   166    11   172    11   175 0.87 Glycosyl transferase family 2
Glyco_tranf_2_3      PF13641.1    228 sp|Q8ZDX7|ARNC_YERPE -            327     2e-12   47.3   0.1   1   1     1e-15   3.8e-12   46.4   0.1     2   129     9   134     8   207 0.80 Glycosyltransferase like family 2
Glyco_tranf_2_2      PF10111.4    281 sp|Q8ZDX7|ARNC_YERPE -            327   0.00027   20.1   0.0   1   1     1e-07   0.00038   19.6   0.0     1   100    11   104    11   117 0.79 Glycosyltransferase like family 2
Glyco_tranf_2_4      PF13704.1     97 sp|Q8ZDX7|ARNC_YERPE -            327     0.072   13.4   0.0   1   1   5.5e-05       0.2   11.9   0.0    15    81    36   102    17   110 0.61 Glycosyl transferase family 2
Polysacc_deac_1      PF01522.16   124 sp|Q7CIT9|ARND_YERPE -            301     2e-14   53.2   0.0   1   1     5e-18   3.7e-14   52.4   0.0    17   123    16   170     6   171 0.93 Polysaccharide deacetylase
DUF2334              PF10096.4    243 sp|Q7CIT9|ARND_YERPE -            301      0.11   11.8   0.0   1   1   2.2e-05      0.16   11.3   0.0    55   149    88   170    82   198 0.80 Uncharacterized protein conserved in bacteria (DUF2334)
EamA                 PF00892.15   126 sp|Q74TF8|ARNE_YERPE -            114   2.5e-11   43.7  11.4   1   1   2.4e-14   7.2e-11   42.2  11.4    47   125    33   111     1   112 0.87 EamA-like transporter family
Multi_Drug_Res       PF00893.14    93 sp|Q74TF8|ARNE_YERPE -            114   4.8e-08   33.3   3.0   1   1   2.7e-11   7.9e-08   32.6   3.0     3    93     4   103     2   103 0.85 Small Multidrug Resistance protein
EmrE                 PF13536.1    113 sp|Q74TF8|ARNE_YERPE -            114   4.1e-06   26.9   9.6   1   1   1.7e-09   4.9e-06   26.7   9.6    17   107    19   113     3   114 0.80 Multidrug resistance efflux transporter
UPF0546              PF10639.4    113 sp|Q74TF8|ARNE_YERPE -            114    0.0003   20.5   0.8   1   1   1.2e-07   0.00034   20.3   0.8    37   112    35   110     7   111 0.71 Uncharacterised protein family UPF0546
TPT                  PF03151.11   153 sp|Q74TF8|ARNE_YERPE -            114     0.049   13.2   3.7   1   1   2.4e-05     0.072   12.7   3.7    77   150    33   109     2   112 0.79 Triose-phosphate Transporter family
EamA                 PF00892.15   126 sp|Q8ZDY0|ARNF_YERPE -            128     3e-06   27.2  11.1   1   1   1.3e-09   4.7e-06   26.6  11.1    54   125    48   121     3   122 0.90 EamA-like transporter family
Multi_Drug_Res       PF00893.14    93 sp|Q8ZDY0|ARNF_YERPE -            128    0.0057   17.0   6.3   1   1   5.2e-06     0.019   15.4   6.3    15    91    16   111     3   113 0.74 Small Multidrug Resistance protein
TMEM223              PF14640.1    170 sp|Q8ZDY0|ARNF_YERPE -            128      0.29   11.0   1.4   2   2   0.00026      0.95    9.3   0.8    68    89    50    71    42    75 0.90 Transmembrane protein 223
DUF202               PF02656.10    73 sp|Q8ZDY0|ARNF_YERPE -            128       1.1    9.5   8.9   2   2   0.00016      0.59   10.4   0.6    17    60    82   120    80   125 0.74 Domain of unknown function (DUF202)
PMT                  PF02366.13   245 sp|Q8ZDX9|ARNT_YERPE -            554   1.2e-40  139.4  17.3   1   3   1.6e-44   1.2e-40  139.4  17.3     7   245    11   239     7   239 0.95 Dolichyl-phosphate-mannose-protein mannosyltransferase
PMT_2                PF13231.1    159 sp|Q8ZDX9|ARNT_YERPE -            554   6.2e-16   58.6  16.5   2   4   8.4e-20   6.2e-16   58.6  16.5     2   158    63   223    62   270 0.79 Dolichyl-phosphate-mannose-protein mannosyltransferase
EPSP_synthase        PF00275.15   419 sp|Q60112|AROA_YERPE -            428  7.8e-161  535.1   0.0   1   1  5.9e-165  8.8e-161  535.0   0.0     2   418     8   420     7   421 0.97 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DHQ_synthase         PF01761.15   261 sp|Q8ZJF6|AROB_YERPE -            362  1.1e-106  355.6   0.0   1   1  2.6e-110  1.3e-106  355.3   0.0     2   260    67   326    66   327 0.99 3-dehydroquinate synthase
Fe-ADH_2             PF13685.1    250 sp|Q8ZJF6|AROB_YERPE -            362   6.5e-14   51.8   0.1   1   1   7.4e-17   3.6e-13   49.3   0.1    18   205    33   238    17   270 0.70 Iron-containing alcohol dehydrogenase
Fe-ADH               PF00465.14   366 sp|Q8ZJF6|AROB_YERPE -            362   1.1e-10   40.7   0.4   1   1   3.3e-14   1.7e-10   40.1   0.4    18   328    28   304    15   323 0.77 Iron-containing alcohol dehydrogenase
Chorismate_synt      PF01264.16   346 sp|Q8ZD41|AROC_YERPE -            361  3.3e-148  492.7   0.1   1   1  5.1e-152  3.7e-148  492.6   0.1     1   346    10   346    10   346 0.99 Chorismate synthase
Nfu_N                PF08712.6     87 sp|Q8ZD41|AROC_YERPE -            361     0.011   15.3   0.0   1   1   2.8e-06     0.021   14.4   0.0    36    75   227   266   222   270 0.91 Scaffold protein Nfu/NifU N terminal
Shikimate_dh_N       PF08501.6     83 sp|Q8ZJ74|AROE_YERPE -            273   2.5e-25   88.3   0.0   1   1   1.3e-28   3.9e-25   87.7   0.0     1    83     7    89     7    89 0.99 Shikimate dehydrogenase substrate binding domain
Shikimate_DH         PF01488.15   135 sp|Q8ZJ74|AROE_YERPE -            273   6.2e-15   55.4   0.0   1   1   3.3e-18   9.9e-15   54.8   0.0    13    88   121   194   112   215 0.85 Shikimate / quinate 5-dehydrogenase
NAD_binding_7        PF13241.1    103 sp|Q8ZJ74|AROE_YERPE -            273     0.026   14.7   0.0   1   1   1.5e-05     0.045   14.0   0.0     8    68   121   189   116   196 0.68 Putative NAD(P)-binding
NAD_binding_10       PF13460.1    183 sp|Q8ZJ74|AROE_YERPE -            273     0.032   14.2   0.0   1   1   1.5e-05     0.044   13.7   0.0     1    73   123   194   123   238 0.71 NADH(P)-binding
HeLo                 PF14479.1    212 sp|Q8ZJ74|AROE_YERPE -            273     0.073   12.8   0.2   1   2   0.00033      0.97    9.1   0.0    83   110    19    46    15    94 0.82 Prion-inhibition and propagation
SKI                  PF01202.17   158 sp|Q8ZJF7|AROK_YERPE -            173   5.6e-56  188.7   0.5   1   1   1.3e-58   6.3e-56  188.6   0.5     1   157    13   170    13   171 0.99 Shikimate kinase
AAA_17               PF13207.1    121 sp|Q8ZJF7|AROK_YERPE -            173   1.7e-10   41.7   0.1   1   1   5.2e-13   2.6e-10   41.1   0.1     2   110     7   116     6   157 0.68 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZJF7|AROK_YERPE -            173   2.5e-08   33.8   0.1   1   1   2.7e-10   1.3e-07   31.5   0.1     2   140     7   140     7   164 0.75 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZJF7|AROK_YERPE -            173   1.2e-07   32.0   0.1   1   1     4e-10     2e-07   31.3   0.1     1   115     7   120     7   164 0.60 AAA domain
Cytidylate_kin2      PF13189.1    179 sp|Q8ZJF7|AROK_YERPE -            173   2.3e-06   27.6   0.1   1   2   2.4e-06    0.0012   18.8   0.0     2    31     7    36     6    47 0.85 Cytidylate kinase-like family
AAA                  PF00004.24   132 sp|Q8ZJF7|AROK_YERPE -            173   0.00028   21.1   0.1   1   1   1.1e-06   0.00055   20.1   0.1     2    29     8    35     7   172 0.90 ATPase family associated with various cellular activities (AAA)
AAA_22               PF13401.1    131 sp|Q8ZJF7|AROK_YERPE -            173    0.0015   18.7   0.1   1   1   7.1e-06    0.0035   17.4   0.1     3    37     3    41     1   128 0.68 AAA domain
APS_kinase           PF01583.15   157 sp|Q8ZJF7|AROK_YERPE -            173    0.0021   17.7   0.1   1   1   9.1e-06    0.0045   16.6   0.1     5   113     7   110     3   122 0.63 Adenylylsulphate kinase
ABC_tran             PF00005.22   137 sp|Q8ZJF7|AROK_YERPE -            173     0.003   17.8   0.2   1   1   1.7e-05    0.0085   16.3   0.2    10    37     3    30     1   166 0.83 ABC transporter
AAA_14               PF13173.1    128 sp|Q8ZJF7|AROK_YERPE -            173    0.0032   17.3   0.1   1   2    0.0001     0.049   13.5   0.0     2    35     4    33     3    47 0.77 AAA domain
AAA_28               PF13521.1    163 sp|Q8ZJF7|AROK_YERPE -            173    0.0032   17.4   0.0   1   2   0.00019     0.094   12.6   0.0     2    27     7    33     6    48 0.82 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZJF7|AROK_YERPE -            173     0.004   17.1   0.1   1   1   2.7e-05     0.013   15.4   0.1    23    49     3    29     2   171 0.90 AAA ATPase domain
AAA_5                PF07728.9    139 sp|Q8ZJF7|AROK_YERPE -            173    0.0049   16.6   0.0   1   1   2.5e-05     0.012   15.2   0.0     1    28     6    33     6    36 0.92 AAA domain (dynein-related subfamily)
AAA_10               PF12846.2    304 sp|Q8ZJF7|AROK_YERPE -            173    0.0053   16.2   0.2   1   1   2.1e-05      0.01   15.2   0.1     2    25     5    28     4    85 0.85 AAA-like domain
Zeta_toxin           PF06414.7    201 sp|Q8ZJF7|AROK_YERPE -            173    0.0057   15.7   0.1   1   1   3.8e-05     0.019   14.0   0.0    16    40     4    28     2    39 0.86 Zeta toxin
AAA_25               PF13481.1    194 sp|Q8ZJF7|AROK_YERPE -            173    0.0099   15.2   0.2   1   1     8e-05     0.039   13.3   0.2    36   112     7    86     1   170 0.83 AAA domain
RNA_helicase         PF00910.17   107 sp|Q8ZJF7|AROK_YERPE -            173     0.013   15.6   0.0   1   1   5.9e-05     0.029   14.5   0.0     1    33     7    38     7    77 0.84 RNA helicase
AAA_29               PF13555.1     62 sp|Q8ZJF7|AROK_YERPE -            173     0.015   14.8   0.0   1   1   5.6e-05     0.027   13.9   0.0    23    39     4    20     1    21 0.86 P-loop containing region of AAA domain
AAA_PrkA             PF08298.6    358 sp|Q8ZJF7|AROK_YERPE -            173      0.02   13.6   0.0   1   1   7.8e-05     0.038   12.6   0.0    87   114     3    30     1    35 0.86 PrkA AAA domain
His_biosynth         PF00977.16   229 sp|Q8ZJF7|AROK_YERPE -            173      0.02   14.1   0.1   1   1   5.5e-05     0.027   13.7   0.1    40    96    42    99    25   118 0.89 Histidine biosynthesis protein
AAA_24               PF13479.1    213 sp|Q8ZJF7|AROK_YERPE -            173     0.023   14.2   0.0   1   1   7.6e-05     0.037   13.5   0.0     5    76     6    80     2    86 0.82 AAA domain
UPF0079              PF02367.12   123 sp|Q8ZJF7|AROK_YERPE -            173     0.031   13.9   0.0   1   1   0.00015     0.074   12.6   0.0    18    41     7    30     2    35 0.89 Uncharacterised P-loop hydrolase UPF0079
DUF258               PF03193.11   161 sp|Q8ZJF7|AROK_YERPE -            173      0.04   13.1   0.0   1   1    0.0001      0.05   12.8   0.0    35    63     4    32     1    93 0.87 Protein of unknown function, DUF258
Mg_chelatase         PF01078.16   207 sp|Q8ZJF7|AROK_YERPE -            173      0.04   13.0   0.2   1   1   0.00022      0.11   11.6   0.0    22    47     4    29     1   108 0.85 Magnesium chelatase, subunit ChlI
TrwB_AAD_bind        PF10412.4    386 sp|Q8ZJF7|AROK_YERPE -            173     0.049   12.2   0.0   1   1   0.00021       0.1   11.1   0.0    13    40     2    29     1    56 0.91 Type IV secretion-system coupling protein DNA-binding domain
IstB_IS21            PF01695.12   178 sp|Q8ZJF7|AROK_YERPE -            173     0.069   12.5   0.0   1   1    0.0003      0.15   11.4   0.0    45    70     2    27     1    33 0.88 IstB-like ATP binding protein
Guanylate_kin        PF00625.16   183 sp|Q8ZJF7|AROK_YERPE -            173      0.07   12.5   0.0   1   1   0.00017     0.083   12.3   0.0     2    31     4    33     3   160 0.88 Guanylate kinase
AAA_2                PF07724.9    171 sp|Q8ZJF7|AROK_YERPE -            173      0.11   12.4   1.4   1   2   0.00069      0.34   10.7   0.9     3    75     4   104     2   120 0.63 AAA domain (Cdc48 subfamily)
Sigma54_activ_2      PF14532.1    138 sp|Q8ZJF7|AROK_YERPE -            173      0.12   12.4   0.0   1   1   0.00076      0.38   10.8   0.0    20    44     3    27     1    44 0.86 Sigma-54 interaction domain
SKI                  PF01202.17   158 sp|Q8ZC15|AROL_YERPE -            174   1.1e-47  161.7   0.0   1   1     2e-50   1.3e-47  161.6   0.0     1   157    11   168    11   169 0.98 Shikimate kinase
AAA_17               PF13207.1    121 sp|Q8ZC15|AROL_YERPE -            174   1.3e-08   35.7   0.0   1   1   2.9e-11   1.9e-08   35.1   0.0     2   109     5   112     4   145 0.68 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZC15|AROL_YERPE -            174   6.1e-08   32.6   0.2   1   1   1.9e-10   1.3e-07   31.6   0.2     2   117     5   113     4   142 0.75 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZC15|AROL_YERPE -            174     1e-07   32.2   0.0   1   1   9.6e-10   6.2e-07   29.7   0.0     1   120     5   122     5   141 0.70 AAA domain
Cytidylate_kin2      PF13189.1    179 sp|Q8ZC15|AROL_YERPE -            174   1.2e-06   28.5   0.0   1   1   3.8e-09   2.5e-06   27.5   0.0     6    59     9    63     4   112 0.70 Cytidylate kinase-like family
AAA                  PF00004.24   132 sp|Q8ZC15|AROL_YERPE -            174   0.00048   20.3   0.0   1   1   1.3e-06   0.00085   19.5   0.0     2    31     6    35     5    69 0.86 ATPase family associated with various cellular activities (AAA)
RNA_helicase         PF00910.17   107 sp|Q8ZC15|AROL_YERPE -            174    0.0011   19.1   0.0   1   1   8.4e-06    0.0054   16.8   0.0     1    49     5    59     5    72 0.86 RNA helicase
AAA_28               PF13521.1    163 sp|Q8ZC15|AROL_YERPE -            174    0.0013   18.6   0.0   1   1   3.6e-06    0.0023   17.9   0.0     2    28     5    33     4    76 0.81 AAA domain
Zeta_toxin           PF06414.7    201 sp|Q8ZC15|AROL_YERPE -            174    0.0015   17.6   0.0   1   1   3.5e-06    0.0023   17.0   0.0    18    57     4    40     2    76 0.87 Zeta toxin
AAA_5                PF07728.9    139 sp|Q8ZC15|AROL_YERPE -            174    0.0025   17.5   0.1   1   1   5.8e-06    0.0038   16.9   0.1     2    64     5    69     4   100 0.74 AAA domain (dynein-related subfamily)
6PF2K                PF01591.13   223 sp|Q8ZC15|AROL_YERPE -            174    0.0027   16.8   0.0   1   1   5.7e-06    0.0037   16.3   0.0    15    97     4    80     1    92 0.83 6-phosphofructo-2-kinase
AAA_24               PF13479.1    213 sp|Q8ZC15|AROL_YERPE -            174     0.018   14.6   0.1   1   2   0.00021      0.13   11.7   0.1     6    57     5    59     2    77 0.76 AAA domain
CoaE                 PF01121.15   180 sp|Q8ZC15|AROL_YERPE -            174     0.021   14.2   0.1   1   1   6.5e-05     0.042   13.2   0.1     5    39     7    42     3    52 0.86 Dephospho-CoA kinase
UPF0079              PF02367.12   123 sp|Q8ZC15|AROL_YERPE -            174     0.025   14.2   0.2   1   1     7e-05     0.045   13.3   0.2    17    41     4    28     1    37 0.88 Uncharacterised P-loop hydrolase UPF0079
APS_kinase           PF01583.15   157 sp|Q8ZC15|AROL_YERPE -            174     0.042   13.5   0.0   1   1   0.00012     0.078   12.6   0.0     3    28     3    28     1    40 0.87 Adenylylsulphate kinase
PduV-EutP            PF10662.4    143 sp|Q8ZC15|AROL_YERPE -            174     0.047   13.1   0.1   1   1   0.00014     0.088   12.2   0.1     2    23     3    24     2    51 0.80 Ethanolamine utilisation - propanediol utilisation
ABC_tran             PF00005.22   137 sp|Q8ZC15|AROL_YERPE -            174      0.05   13.9   0.2   1   1   0.00014     0.092   13.0   0.2    12    34     3    25     1    52 0.90 ABC transporter
AAA_22               PF13401.1    131 sp|Q8ZC15|AROL_YERPE -            174     0.054   13.6   0.1   1   1   0.00053      0.34   11.0   0.1     8    37     6    42     2   173 0.73 AAA domain
AAA_14               PF13173.1    128 sp|Q8ZC15|AROL_YERPE -            174     0.065   13.1   0.1   1   1   0.00026      0.17   11.8   0.1     4    27     4    27     2    56 0.74 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZC15|AROL_YERPE -            174     0.082   12.8   0.3   1   1   0.00027      0.18   11.8   0.3    26    51     4    29     2   162 0.84 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q8ZC15|AROL_YERPE -            174     0.091   13.0   0.0   1   1    0.0002      0.13   12.6   0.0    25    45     8    28     4    52 0.86 AAA domain
AAA_25               PF13481.1    194 sp|Q8ZC15|AROL_YERPE -            174      0.18   11.1   1.4   1   1   0.00055      0.35   10.2   1.4    35   105     4    76     1   161 0.76 AAA domain
DHquinase_II         PF01220.14   140 sp|Q8ZAX1|AROQ_YERPE -            150   6.5e-62  206.9   0.1   1   1     5e-66   7.4e-62  206.8   0.1     2   139     6   143     5   144 0.99 Dehydroquinase class II
AsnA                 PF03590.10   244 sp|Q8ZJT3|ASNA_YERPE -            330  2.3e-125  416.9   0.0   1   1  3.8e-129  2.8e-125  416.6   0.0     1   244     3   246     3   246 0.99 Aspartate-ammonia ligase
tRNA-synt_2          PF00152.15   335 sp|Q8ZJT3|ASNA_YERPE -            330   1.5e-06   27.1   0.3   2   2   1.4e-07    0.0011   17.8   0.1   259   327   249   313   242   315 0.74 tRNA synthetases class II (D, K and N)
JSRP                 PF15312.1     65 sp|Q8ZE65|ASR1_YERPE -             94     0.034   14.1   0.4   1   2   2.3e-06     0.034   14.1   0.4    15    64     7    56     6    57 0.79 Junctional sarcoplasmic reticulum protein
Asr                  PF06392.6     19 sp|Q8ZDC4|ASR2_YERPE -            121   7.5e-07   29.3  73.5   1   3   1.3e-09   1.1e-06   28.8  17.3     1    19    47    67    47    67 0.99 Acid shock protein repeat
DUF2574              PF10836.3     93 sp|Q8ZDC4|ASR2_YERPE -            121     0.035   13.8   5.8   1   1   4.3e-05     0.036   13.7   5.0     4    65     3    64     1    95 0.66 Protein of unknown function (DUF2574)
Macoilin             PF09726.4    697 sp|Q8ZDC4|ASR2_YERPE -            121      0.18   10.0  15.4   1   1   0.00026      0.21    9.8  15.4   213   308    21   114    14   120 0.75 Transmembrane protein
Bud13                PF09736.4    145 sp|Q8ZDC4|ASR2_YERPE -            121      0.46   10.7  12.6   1   1   0.00073       0.6   10.3  12.6    13    78    48   113    27   119 0.54 Pre-mRNA-splicing factor of RES complex
GAGA_bind            PF06217.7    301 sp|Q8ZDC4|ASR2_YERPE -            121      0.51   10.2  14.2   1   1   0.00066      0.55   10.1  14.2    86   178    24   116     6   121 0.56 GAGA binding protein-like family
Borrelia_P83         PF05262.6    489 sp|Q8ZDC4|ASR2_YERPE -            121      0.54    8.4  21.7   1   1   0.00074      0.61    8.3  21.7   231   303    40   111    21   120 0.66 Borrelia P83/100 protein
Arginosuc_synth      PF00764.14   388 sp|Q8ZFV7|ASSY_YERPE -            455   2.4e-58  198.0   0.0   1   1   8.1e-62     3e-58  197.7   0.0     2   380    16   408    15   415 0.88 Arginosuccinate synthase
QueC                 PF06508.8    210 sp|Q8ZFV7|ASSY_YERPE -            455     0.004   16.4   0.0   1   1   2.5e-06    0.0094   15.2   0.0     4    62    16    74    13    94 0.90 Queuosine biosynthesis protein QueC
Asn_synthase         PF00733.16   255 sp|Q8ZFV7|ASSY_YERPE -            455      0.02   14.4   0.0   1   1   9.4e-06     0.035   13.6   0.0    12    65     6    58     2    88 0.66 Asparagine synthase
Phage_XkdX           PF09693.5     40 sp|Q8ZFV7|ASSY_YERPE -            455     0.075   12.5   0.0   1   2   0.00023      0.86    9.1   0.0     3    21   136   154   135   157 0.91 Phage uncharacterised protein (Phage_XkdX)
AstA                 PF04958.7    342 sp|Q9ZC67|ASTA_YERPE -            350  1.1e-139  464.6   0.0   1   1  1.6e-143  1.2e-139  464.5   0.0     1   341     1   342     1   343 0.98 Arginine N-succinyltransferase beta subunit
Molydop_binding      PF01568.16   110 sp|Q9ZC67|ASTA_YERPE -            350     0.016   15.0   0.0   1   1   4.6e-06     0.034   13.9   0.0    29    54   317   342   294   348 0.75 Molydopterin dinucleotide binding domain
AstB                 PF04996.7    440 sp|Q8D0D8|ASTB_YERPE -            447  1.1e-207  690.0   2.9   1   1  8.6e-212  1.3e-207  689.9   2.9     1   439     1   446     1   447 0.98 Succinylarginine dihydrolase
Aminotran_3          PF00202.16   339 sp|Q8D0D7|ASTC_YERPE -            414  1.1e-108  363.1   0.1   1   1  2.6e-112  1.3e-108  362.8   0.1     2   337    27   351    26   353 0.96 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|Q8D0D7|ASTC_YERPE -            414   0.00045   19.2   0.0   2   2   1.8e-07   0.00089   18.3   0.0   128   295   177   330   164   387 0.80 Aminotransferase class I and II
ETF                  PF01012.16   164 sp|Q8D0D7|ASTC_YERPE -            414    0.0066   16.1   0.2   1   2   4.2e-06     0.021   14.5   0.0    47   148    59   156    38   162 0.82 Electron transfer flavoprotein domain
Aldedh               PF00171.17   462 sp|Q9ZC68|ASTD_YERPE -            505  2.3e-117  392.1   0.0   1   1  1.9e-121  2.8e-117  391.9   0.0     5   452    27   472    23   478 0.95 Aldehyde dehydrogenase family
AstE_AspA            PF04952.9    292 sp|Q9ZC70|ASTE_YERPE -            330     2e-73  246.8   0.0   1   1   3.1e-77   2.3e-73  246.6   0.0     3   291    44   322    42   323 0.99 Succinylglutamate desuccinylase / Aspartoacylase family
Peptidase_M14        PF00246.19   279 sp|Q9ZC70|ASTE_YERPE -            330    0.0013   18.4   0.1   1   2   2.5e-05      0.18   11.3   0.0    42    75    39    72     4    83 0.83 Zinc carboxypeptidase
KdpA                 PF03814.10   552 sp|Q8ZD96|ATKA_YERPE -            562  1.4e-236  785.8  31.4   1   1  3.3e-240  1.6e-236  785.6  31.4     1   552     9   557     9   557 0.99 Potassium-transporting ATPase A subunit
Ion_trans            PF00520.26   200 sp|Q8ZD96|ATKA_YERPE -            562      0.01   15.0   9.7   2   2   0.00011      0.54    9.4   5.9    74   192   149   393   107   399 0.61 Ion transport protein
DUF1270              PF06900.6     53 sp|Q8ZD96|ATKA_YERPE -            562      0.27   11.4   3.9   1   2   6.1e-05       0.3   11.2   0.5     8    29    62    83    59    87 0.87 Protein of unknown function (DUF1270)
Hydrolase            PF00702.21   215 sp|Q8ZD97|ATKB_YERPE -            688   1.1e-38  133.8   2.8   1   1   5.9e-42   1.8e-38  133.1   2.8     1   215   307   536   307   536 0.83 haloacid dehalogenase-like hydrolase
E1-E2_ATPase         PF00122.15   230 sp|Q8ZD97|ATKB_YERPE -            688   1.9e-33  115.4   0.5   1   2   6.4e-37   1.9e-33  115.4   0.5     2   230    72   303    71   303 0.92 E1-E2 ATPase
HAD                  PF12710.2    192 sp|Q8ZD97|ATKB_YERPE -            688   8.9e-14   52.0   0.0   1   1   5.5e-17   1.6e-13   51.2   0.0     2   191   311   532   310   533 0.65 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|Q8ZD97|ATKB_YERPE -            688   3.5e-05   23.5   1.0   2   2   5.8e-08   0.00017   21.2   0.3   193   241   507   555   503   562 0.90 haloacid dehalogenase-like hydrolase
Response_reg         PF00072.19   112 sp|Q8ZD97|ATKB_YERPE -            688     0.092   12.7   0.0   1   1   0.00011      0.33   10.9   0.1    70   107   469   506   459   510 0.87 Response regulator receiver domain
KdpC                 PF02669.10   188 sp|Q8ZD98|ATKC_YERPE -            200   3.4e-69  232.3   0.3   1   1   2.6e-73   3.8e-69  232.1   0.3     1   187     1   187     1   188 0.99 K+-transporting ATPase, c chain
ATP-synt_A           PF00119.15   215 sp|Q7CFM3|ATP6_YERPE -            274   2.7e-62  210.0  19.5   1   1   2.1e-66   3.2e-62  209.8  19.5     1   214    42   268    42   269 0.96 ATP synthase A chain
ATP-synt_ab          PF00006.20   215 sp|Q8Z9S4|ATPA_YERPE -            513   3.8e-72  242.2   0.2   1   2   4.8e-75   1.2e-71  240.6   0.1     1   215   148   375   148   375 0.99 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|Q8Z9S4|ATPA_YERPE -            513   2.2e-18   66.7   1.6   1   1     2e-21     5e-18   65.6   1.6     1    95   387   468   387   505 0.69 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|Q8Z9S4|ATPA_YERPE -            513   5.2e-15   55.4   0.2   1   1   4.6e-18   1.1e-14   54.3   0.2     5    69    28    92    25    92 0.98 ATP synthase alpha/beta family, beta-barrel domain
HAS-barrel           PF09378.5     91 sp|Q8Z9S4|ATPA_YERPE -            513   3.5e-07   30.0   0.6   1   2   9.4e-10   2.3e-06   27.3   0.2     6    84    29    89    25   109 0.85 HAS barrel domain
KaiC                 PF06745.8    227 sp|Q8Z9S4|ATPA_YERPE -            513   4.4e-05   22.7   0.0   1   1   3.3e-08   8.1e-05   21.8   0.0     1    71   146   213   146   252 0.83 KaiC
Arch_ATPase          PF01637.13   234 sp|Q8Z9S4|ATPA_YERPE -            513    0.0015   18.2   0.0   1   1   1.2e-06    0.0029   17.3   0.0    24   131   166   267   153   302 0.76 Archaeal ATPase
ATP-synt_ab          PF00006.20   215 sp|Q7CFM8|ATPB_YERPE -            460   2.5e-63  213.4   0.0   1   1   9.3e-67   3.4e-63  213.0   0.0     1   215   129   342   129   342 0.97 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|Q7CFM8|ATPB_YERPE -            460   2.4e-27   95.6   0.0   1   1   1.2e-30   4.5e-27   94.7   0.0     1   109   355   458   355   460 0.95 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|Q7CFM8|ATPB_YERPE -            460     6e-23   80.8   2.3   1   1   3.2e-26   1.2e-22   79.8   2.3     1    68     6    72     6    73 0.97 ATP synthase alpha/beta family, beta-barrel domain
AAA_25               PF13481.1    194 sp|Q7CFM8|ATPB_YERPE -            460     0.013   14.9   0.0   1   1   6.5e-06     0.024   14.0   0.0     5    99   117   212   113   257 0.68 AAA domain
OSCP                 PF00213.13   172 sp|Q7CFM5|ATPD_YERPE -            177   5.8e-51  172.7   0.6   1   1   1.3e-54   6.5e-51  172.6   0.6     1   171     7   174     7   175 0.97 ATP synthase delta (OSCP) subunit
DUF3632              PF12311.3    184 sp|Q7CFM5|ATPD_YERPE -            177       0.1   12.3   0.5   1   1   2.8e-05      0.14   11.9   0.1    74    99    21    46     9    82 0.80 Protein of unknown function (DUF3632)
ATP-synt_DE_N        PF02823.11    80 sp|P58647|ATPE_YERPE -            140   4.4e-28   96.8   0.2   1   1   8.4e-32   6.2e-28   96.3   0.2     2    80     7    85     6    85 0.99 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
ATP-synt_DE          PF00401.15    48 sp|P58647|ATPE_YERPE -            140   1.4e-15   56.8   4.5   1   1     3e-19   2.2e-15   56.2   4.5     2    47    90   135    90   136 0.97 ATP synthase, Delta/Epsilon chain, long alpha-helix domain
ATP-synt_B           PF00430.13   132 sp|Q7CFM4|ATPF_YERPE -            156     6e-34  116.6  20.0   1   1   6.6e-37     7e-34  116.4  20.0     1   132     6   137     6   137 0.98 ATP synthase B/B' CF(0)
Mt_ATP-synt_B        PF05405.9    163 sp|Q7CFM4|ATPF_YERPE -            156   5.4e-05   22.7   5.4   1   1   6.5e-08   6.8e-05   22.3   5.4    20   123    11   117     8   156 0.75 Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
T2SM                 PF04612.7    160 sp|Q7CFM4|ATPF_YERPE -            156     0.004   16.9   1.9   1   1   3.8e-06     0.004   16.9   1.9    21    95    11    83     7    97 0.80 Type II secretion system (T2SS), protein M
V-ATPase_G           PF03179.10   105 sp|Q7CFM4|ATPF_YERPE -            156     0.019   15.2  24.7   1   2   0.00056       0.6   10.4   3.0     2    42    36    76    35    77 0.88 Vacuolar (H+)-ATPase G subunit
V-ATPase_G           PF03179.10   105 sp|Q7CFM4|ATPF_YERPE -            156     0.019   15.2  24.7   2   2   2.5e-05     0.027   14.7  22.4     2    96    58   151    57   155 0.79 Vacuolar (H+)-ATPase G subunit
RNA_pol_Rpb2_45      PF10385.4     66 sp|Q7CFM4|ATPF_YERPE -            156     0.057   13.2   1.6   1   1   5.4e-05     0.057   13.2   1.6    18    42    94   118    92   126 0.88 RNA polymerase beta subunit external 1 domain
YMF19                PF02326.10    86 sp|Q7CFM4|ATPF_YERPE -            156     0.067   13.7   0.1   1   1   0.00018      0.19   12.3   0.1    17    75    12    70     7   140 0.91 Plant ATP synthase F0
Ycf1                 PF05758.7    929 sp|Q7CFM4|ATPF_YERPE -            156      0.34    8.5   3.4   1   1   0.00036      0.38    8.4   3.4   202   307    12   116     2   142 0.50 Ycf1
AAA_13               PF13166.1    712 sp|Q7CFM4|ATPF_YERPE -            156      0.41    9.0   9.7   1   1   0.00044      0.46    8.8   9.7    95   208    30   142    18   155 0.72 AAA domain
OmpH                 PF03938.9    158 sp|Q7CFM4|ATPF_YERPE -            156      0.64    9.9  19.7   1   1   0.00076       0.8    9.6  19.7    34   126    30   128    27   156 0.75 Outer membrane protein (OmpH-like)
DUF2052              PF09747.4    181 sp|Q7CFM4|ATPF_YERPE -            156      0.79    9.6   7.5   1   1   0.00087      0.92    9.4   7.5    62   164    45   147    30   155 0.70 Coiled-coil domain containing protein (DUF2052)
DUF3283              PF11686.3     61 sp|Q7CFM4|ATPF_YERPE -            156       1.8    8.4   7.7   1   2   0.00054      0.57   10.0   2.5     5    42    44    81    43    92 0.92 Protein of unknown function (DUF3283)
ATP-synt             PF00231.14   290 sp|Q8Z9S5|ATPG_YERPE -            287  1.9e-106  355.6   0.0   1   1  1.4e-110  2.1e-106  355.4   0.0     2   290     3   287     2   287 0.98 ATP synthase
ATP-synt_C           PF00137.16    66 sp|P68706|ATPL_YERPE -             79   1.1e-16   60.5  13.8   1   1   1.6e-20   1.2e-16   60.3  13.8     2    66     9    77     8    77 0.98 ATP synthase subunit C
HlyIII               PF03006.15   222 sp|P68706|ATPL_YERPE -             79     0.013   14.9   0.7   1   1   2.1e-06     0.015   14.6   0.7   108   162     8    73     1    78 0.67 Haemolysin-III related
Flavodoxin_2         PF02525.12   199 sp|Q8ZE60|AZOR_YERPE -            201   8.1e-48  162.5   0.0   1   1   1.3e-51   9.4e-48  162.3   0.0     2   197     3   196     2   198 0.92 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|Q8ZE60|AZOR_YERPE -            201     3e-12   46.3   0.0   1   1     5e-16   3.7e-12   45.9   0.0     2   148     3   174     2   178 0.80 NADPH-dependent FMN reductase
Bac_surface_Ag       PF01103.18   323 sp|Q8ZH58|BAMA_YERPE -            795   1.3e-96  323.9  17.0   1   1  7.6e-100   2.3e-96  323.0  17.0     1   323   448   795   448   795 0.95 Surface antigen
Surf_Ag_VNR          PF07244.10    78 sp|Q8ZH58|BAMA_YERPE -            795   8.1e-66  218.4  11.6   1   5   3.1e-09   9.1e-06   26.0   0.1     1    78    24    91    24    91 0.89 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|Q8ZH58|BAMA_YERPE -            795   8.1e-66  218.4  11.6   2   5   1.3e-14     4e-11   43.1   0.1     1    78    92   172    92   172 0.94 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|Q8ZH58|BAMA_YERPE -            795   8.1e-66  218.4  11.6   3   5   1.6e-17   4.7e-14   52.5   0.1     2    78   176   263   175   263 0.85 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|Q8ZH58|BAMA_YERPE -            795   8.1e-66  218.4  11.6   4   5   1.5e-13   4.6e-10   39.7   0.1     2    78   267   344   266   344 0.88 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|Q8ZH58|BAMA_YERPE -            795   8.1e-66  218.4  11.6   5   5   2.3e-20   6.8e-17   61.6   0.1     1    78   347   421   347   421 0.92 Surface antigen variable number repeat
POTRA_1              PF08478.5     69 sp|Q8ZH58|BAMA_YERPE -            795   1.6e-07   31.2   0.6   3   5   5.2e-05      0.15   12.0   0.0     2    34   176   208   175   225 0.90 POTRA domain, FtsQ-type
PQQ_2                PF13360.1    238 sp|Q7CJM5|BAMB_YERPE -            393   2.1e-62  210.6  19.8   1   3   2.9e-09   1.4e-05   24.6   0.3    14    67    45   100    37   109 0.83 PQQ-like domain
PQQ_2                PF13360.1    238 sp|Q7CJM5|BAMB_YERPE -            393   2.1e-62  210.6  19.8   2   3   3.1e-55   1.5e-51  175.1   8.0     2   238    78   320    77   320 0.95 PQQ-like domain
PQQ_2                PF13360.1    238 sp|Q7CJM5|BAMB_YERPE -            393   2.1e-62  210.6  19.8   3   3   5.2e-12   2.6e-08   33.6   0.3     2    91   303   391   302   393 0.92 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   2   8     9e-09   4.5e-05   23.5   0.0     1    39    89   138    89   139 0.85 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   3   8   1.4e-08   7.1e-05   22.9   0.0     1    37   140   176   140   179 0.96 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   4   8     7e-05      0.35   11.2   0.0     1    36   180   220   180   223 0.83 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   5   8   1.1e-09   5.4e-06   26.4   0.1     1    40   225   275   225   275 0.85 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   6   8   2.1e-05       0.1   12.9   0.0     1    36   276   309   276   312 0.91 PQQ-like domain
PQQ_3                PF13570.1     40 sp|Q7CJM5|BAMB_YERPE -            393   2.6e-33  113.3  20.2   7   8   8.6e-05      0.42   10.9   0.4     3    39   316   353   314   354 0.82 PQQ-like domain
PQQ                  PF01011.16    38 sp|Q7CJM5|BAMB_YERPE -            393   6.4e-29   98.0   7.2   1   6     3e-08   0.00015   21.1   0.0     3    30    72    99    70   105 0.87 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|Q7CJM5|BAMB_YERPE -            393   6.4e-29   98.0   7.2   2   6   1.2e-07   0.00059   19.2   0.1     3    37   123   157   122   158 0.90 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|Q7CJM5|BAMB_YERPE -            393   6.4e-29   98.0   7.2   3   6   6.9e-07    0.0034   16.8   0.0     1    34   161   194   161   196 0.90 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|Q7CJM5|BAMB_YERPE -            393   6.4e-29   98.0   7.2   4   6   0.00012       0.6    9.7   0.0     2    34   207   239   206   243 0.88 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|Q7CJM5|BAMB_YERPE -            393   6.4e-29   98.0   7.2   5   6   1.9e-10   9.4e-07   28.0   0.0     1    32   257   288   257   293 0.92 PQQ enzyme repeat
Lipoprotein_18       PF06804.6    303 sp|Q0WCK7|BAMC_YERPE -            352  2.8e-137  456.5   1.4   1   1  4.4e-141  3.2e-137  456.2   1.4     1   303    40   344    40   344 0.99 NlpB/DapX lipoprotein
FlgD_ig              PF13860.1     81 sp|Q0WCK7|BAMC_YERPE -            352    0.0044   16.7   0.3   2   2   6.7e-05       0.5   10.1   0.0    19    75   255   308   246   316 0.79 FlgD Ig-like domain
SmpA_OmlA            PF04355.8     71 sp|Q7CH39|BAME_YERPE -            116   3.2e-25   87.5   0.2   1   1   3.4e-29   5.1e-25   86.8   0.2     1    70    38   107    38   108 0.98 SmpA / OmlA family
Peptidase_M48        PF01435.13   226 sp|Q8ZCC3|BEPA_YERPE -            486   9.4e-30  103.8   0.6   1   1   2.1e-32   1.7e-29  102.9   0.1    10   225    47   252    38   253 0.83 Peptidase family M48
TPR_16               PF13432.1     65 sp|Q8ZCC3|BEPA_YERPE -            486     2e-11   44.2  13.9   1   3   6.5e-10   5.4e-07   30.1   0.7     1    60   311   371   311   375 0.90 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|Q8ZCC3|BEPA_YERPE -            486     2e-11   44.2  13.9   2   3   4.5e-06    0.0037   17.8   4.9     1    59   379   437   379   452 0.91 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|Q8ZCC3|BEPA_YERPE -            486   9.8e-11   41.8  17.4   1   3   0.00012       0.1   12.9   0.9    24    58   306   340   293   350 0.81 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|Q8ZCC3|BEPA_YERPE -            486   9.8e-11   41.8  17.4   2   3     4e-11   3.3e-08   33.7   3.7     2    67   352   417   351   418 0.97 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|Q8ZCC3|BEPA_YERPE -            486   2.5e-08   33.8  18.9   1   4   1.1e-05    0.0089   16.5   0.6     3    42   309   348   306   350 0.86 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|Q8ZCC3|BEPA_YERPE -            486   2.5e-08   33.8  18.9   3   4   1.8e-07   0.00015   22.1   0.6     3    44   377   418   375   418 0.95 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|Q8ZCC3|BEPA_YERPE -            486   3.2e-05   23.4   9.4   1   3   0.00027      0.22   11.1   4.9    15    63   353   400   305   402 0.84 TPR repeat
TPR_11               PF13414.1     69 sp|Q8ZCC3|BEPA_YERPE -            486   3.2e-05   23.4   9.4   2   3   2.3e-06    0.0019   17.8   1.1     5    60   377   433   373   440 0.84 TPR repeat
TPR_3                PF07720.7     36 sp|Q8ZCC3|BEPA_YERPE -            486   0.00014   21.5   0.4   1   2   4.1e-05     0.033   13.9   0.8     8    25   314   331   310   335 0.86 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|Q8ZCC3|BEPA_YERPE -            486     0.015   15.1   7.4   1   3   0.00096      0.79    9.7   1.0     4    33   310   339   308   340 0.84 Tetratricopeptide repeat
DUF4157              PF13699.1     79 sp|Q8ZCC3|BEPA_YERPE -            486      0.02   15.0   1.9   1   1   3.9e-05     0.032   14.3   0.1    35    76   101   143    97   146 0.76 Domain of unknown function (DUF4157)
DUF2201_N            PF13203.1    292 sp|Q8ZCC3|BEPA_YERPE -            486      0.02   14.0   0.2   1   1   4.2e-05     0.035   13.2   0.2    59    81   127   149   109   159 0.85 Putative metallopeptidase domain
Fis1_TPR_C           PF14853.1     53 sp|Q8ZCC3|BEPA_YERPE -            486     0.058   13.2   0.0   1   1   0.00021      0.17   11.7   0.0    10    39   316   345   311   351 0.83 Fis1 C-terminal tetratricopeptide repeat
Peptidase_MA_2       PF13485.1    128 sp|Q8ZCC3|BEPA_YERPE -            486     0.066   13.2   1.0   1   1   0.00017      0.14   12.2   0.1     9    44   109   147   101   160 0.67 Peptidase MA superfamily
TPR_20               PF14561.1     90 sp|Q8ZCC3|BEPA_YERPE -            486      0.11   12.6  12.8   2   2    0.0001     0.085   12.9   1.2     2    46   355   399   354   404 0.93 Tetratricopeptide repeat
DUF2268              PF10026.4    195 sp|Q8ZCC3|BEPA_YERPE -            486      0.11   11.8   0.2   1   1   0.00025       0.2   10.9   0.2    41    79   102   142    81   154 0.73 Predicted Zn-dependent protease (DUF2268)
TPR_6                PF13174.1     33 sp|Q8ZCC3|BEPA_YERPE -            486       0.4   11.2  16.6   1   2   0.00017      0.14   12.6   1.7     2    32   309   339   308   340 0.92 Tetratricopeptide repeat
GMC_oxred_N          PF00732.14   296 sp|Q8ZGW0|BETA_YERPE -            567   2.5e-98  328.9   0.0   1   1  2.2e-101   3.6e-98  328.3   0.0     1   295     3   300     3   301 0.99 GMC oxidoreductase
GMC_oxred_C          PF05199.8    144 sp|Q8ZGW0|BETA_YERPE -            567   9.2e-43  145.9   0.0   1   1   8.4e-46   1.4e-42  145.4   0.0     3   144   393   527   391   527 0.94 GMC oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZGW0|BETA_YERPE -            567   2.7e-06   26.5   0.2   1   2   3.4e-05     0.055   12.3   0.2     1    33     4    37     4    39 0.95 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZGW0|BETA_YERPE -            567   2.7e-06   26.5   0.2   2   2   4.2e-05      0.07   12.0   0.0   147   215   198   282   186   332 0.78 FAD dependent oxidoreductase
NAD_binding_8        PF13450.1     68 sp|Q8ZGW0|BETA_YERPE -            567    0.0048   16.9   0.1   1   1   7.5e-06     0.012   15.5   0.1     1    28     7    35     7    38 0.93 NAD(P)-binding Rossmann-like domain
Lycopene_cycl        PF05834.7    374 sp|Q8ZGW0|BETA_YERPE -            567    0.0059   15.5   0.2   1   1   5.3e-06    0.0087   15.0   0.2     1    33     4    35     4    41 0.91 Lycopene cyclase protein
FAD_binding_2        PF00890.19   417 sp|Q8ZGW0|BETA_YERPE -            567    0.0097   14.7   0.5   1   2   0.00021      0.35    9.6   0.1     1    32     4    36     4    41 0.88 FAD binding domain
Pyr_redox_2          PF07992.9    201 sp|Q8ZGW0|BETA_YERPE -            567     0.075   12.9   0.0   1   1   9.2e-05      0.15   11.9   0.0     1    33     4    37     4    55 0.77 Pyridine nucleotide-disulphide oxidoreductase
ApbA                 PF02558.11   151 sp|Q8ZGW0|BETA_YERPE -            567      0.13   11.7   0.1   1   1   0.00014      0.22   10.9   0.1     2    26     6    31     5    39 0.81 Ketopantoate reductase PanE/ApbA
HI0933_like          PF03486.9    409 sp|Q8ZGW0|BETA_YERPE -            567      0.19   10.1   0.1   1   1   0.00018       0.3    9.5   0.1     1    32     3    35     3    37 0.83 HI0933-like protein
Aldedh               PF00171.17   462 sp|Q8ZGV9|BETB_YERPE -            490    8e-179  594.7   0.2   1   1  1.2e-182  9.1e-179  594.6   0.2     2   462    16   479    15   479 0.98 Aldehyde dehydrogenase family
DUF552               PF04472.7     73 sp|Q8ZGV9|BETB_YERPE -            490       0.1   12.5   0.1   1   2   7.9e-05      0.59   10.0   0.2     8    46    42    81    35    88 0.88 Protein of unknown function (DUF552)
Glyco_hydro_2_C      PF02836.12   298 sp|Q7CIZ3|BGAL_YERPE -           1060  5.6e-116  386.6   0.0   1   1    3e-119  8.8e-116  385.9   0.0     1   297   351   644   351   645 0.97 Glycosyl hydrolases family 2, TIM barrel domain
Bgal_small_N         PF02929.12   276 sp|Q7CIZ3|BGAL_YERPE -           1060   3.5e-83  278.8   0.3   2   2   3.9e-86   1.2e-82  277.1   0.2     2   274   785  1055   784  1057 0.98 Beta galactosidase small chain
Glyco_hydro_2_N      PF02837.13   167 sp|Q7CIZ3|BGAL_YERPE -           1060   1.7e-51  174.0   0.0   1   1   1.2e-54   3.6e-51  173.0   0.0     2   167    57   226    56   226 0.92 Glycosyl hydrolases family 2, sugar binding domain
Glyco_hydro_2        PF00703.16   110 sp|Q7CIZ3|BGAL_YERPE -           1060   8.8e-13   48.6   0.1   1   1   1.2e-15   3.7e-12   46.6   0.0     1   110   228   349   228   349 0.86 Glycosyl hydrolases family 2
ATP_sub_h            PF10775.4     67 sp|Q7CIZ3|BGAL_YERPE -           1060     0.094   12.4   0.1   1   1   6.3e-05      0.19   11.4   0.1    20    62   719   761   712   765 0.92 ATP synthase complex subunit h
BATS                 PF06968.8     93 sp|Q7CH65|BIOB_YERPE -            345   2.8e-30  103.9   0.0   1   1   7.4e-34   5.5e-30  103.0   0.0     1    93   220   312   220   312 0.99 Biotin and Thiamin Synthesis associated domain
Radical_SAM          PF04055.16   166 sp|Q7CH65|BIOB_YERPE -            345     1e-17   64.8   0.0   1   2   3.3e-21   2.5e-17   63.5   0.0     4   160    50   203    47   207 0.86 Radical SAM superfamily
Methyltransf_11      PF08241.7     95 sp|Q7CH67|BIOC_YERPE -            267   6.4e-24   84.2   0.0   1   1   8.2e-27   1.1e-23   83.5   0.0     1    95    63   154    63   154 0.98 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q7CH67|BIOC_YERPE -            267   9.8e-16   57.6   0.0   1   1   9.6e-19   1.3e-15   57.2   0.0     5   113    60   168    56   223 0.80 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q7CH67|BIOC_YERPE -            267   2.6e-14   53.2   0.1   1   1     3e-17     4e-14   52.6   0.1     3   152    40   192    38   194 0.80 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q7CH67|BIOC_YERPE -            267   4.3e-11   43.0   0.0   1   1   6.6e-14   8.9e-11   42.0   0.0     1   101    62   150    62   150 0.91 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|Q7CH67|BIOC_YERPE -            267   2.2e-09   36.7   0.0   1   1   2.2e-12   2.9e-09   36.3   0.0     5   168    21   171    18   201 0.84 ubiE/COQ5 methyltransferase family
Methyltransf_12      PF08242.7     99 sp|Q7CH67|BIOC_YERPE -            267   9.7e-09   35.6   0.1   1   1   1.5e-11     2e-08   34.5   0.0     1    99    63   152    63   152 0.84 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q7CH67|BIOC_YERPE -            267     4e-08   33.3   0.1   1   1   7.5e-11     1e-07   32.0   0.1     1   114    59   155    59   158 0.86 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CH67|BIOC_YERPE -            267   1.3e-07   32.2   0.1   1   1   1.9e-10   2.6e-07   31.1   0.1     5   110    62   155    58   157 0.79 Methyltransferase domain
Methyltransf_8       PF05148.10   219 sp|Q7CH67|BIOC_YERPE -            267   6.1e-07   29.2   0.0   1   1   9.1e-10   1.2e-06   28.2   0.0    67   155    53   153    44   174 0.81 Hypothetical methyltransferase
Methyltransf_29      PF03141.11   506 sp|Q7CH67|BIOC_YERPE -            267   3.2e-05   22.4   0.0   1   1   3.2e-08   4.3e-05   22.0   0.0   117   220    58   157    23   205 0.77 Putative S-adenosyl-L-methionine-dependent methyltransferase
FtsJ                 PF01728.14   181 sp|Q7CH67|BIOC_YERPE -            267    0.0073   16.3   0.1   1   1   1.1e-05     0.014   15.3   0.1    22    59    57    91    45   201 0.81 FtsJ-like methyltransferase
AAA_26               PF13500.1    199 sp|Q8ZGW9|BIOD1_YERPE -            240   3.1e-38  131.4   0.0   1   1     1e-41   3.8e-38  131.0   0.0     3   196     5   211     3   213 0.94 AAA domain
CbiA                 PF01656.18   195 sp|Q8ZGW9|BIOD1_YERPE -            240   4.3e-20   71.9   0.0   1   1   1.5e-23   5.5e-20   71.6   0.0     2   189     6   206     5   217 0.72 CobQ/CobB/MinD/ParA nucleotide binding domain
DUF1611              PF07755.6    301 sp|Q8ZGW9|BIOD1_YERPE -            240   3.9e-05   22.4   0.2   1   2   3.1e-07    0.0011   17.6   0.2   113   145     3    35     1    57 0.92 Protein of unknown function (DUF1611)
MobB                 PF03205.9    140 sp|Q8ZGW9|BIOD1_YERPE -            240     0.005   16.5   0.0   1   1   4.3e-06     0.016   14.9   0.0     8    49    11    51     3   119 0.83 Molybdopterin guanine dinucleotide synthesis protein B
AAA_26               PF13500.1    199 sp|P69953|BIOD2_YERPE -            222   8.3e-31  107.1   0.0   1   1   2.6e-34   9.7e-31  106.9   0.0     2   194     4   205     3   209 0.88 AAA domain
CbiA                 PF01656.18   195 sp|P69953|BIOD2_YERPE -            222   5.5e-14   52.0   0.0   1   1   1.9e-17   7.2e-14   51.6   0.0     2   177     6   192     5   213 0.74 CobQ/CobB/MinD/ParA nucleotide binding domain
DUF1611              PF07755.6    301 sp|P69953|BIOD2_YERPE -            222    0.0019   16.8   0.1   1   1   9.7e-07    0.0036   16.0   0.1   113   144     3    34     2    44 0.91 Protein of unknown function (DUF1611)
MobB                 PF03205.9    140 sp|P69953|BIOD2_YERPE -            222     0.069   12.8   0.1   1   1   4.7e-05      0.17   11.5   0.1     5    49     7    51     3   116 0.81 Molybdopterin guanine dinucleotide synthesis protein B
Aminotran_1_2        PF00155.16   363 sp|Q7CH66|BIOF_YERPE -            383     2e-60  204.7   0.0   1   1     6e-64   2.2e-60  204.5   0.0     2   363    40   378    39   378 0.93 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|Q7CH66|BIOF_YERPE -            383   1.7e-07   30.6   0.0   1   2   3.5e-10   1.3e-06   27.7   0.0    26   100    81   152    70   199 0.82 Beta-eliminating lyase
DegT_DnrJ_EryC1      PF01041.12   363 sp|Q7CH66|BIOF_YERPE -            383    0.0049   15.9   2.5   1   2   3.7e-06     0.014   14.4   0.3    19    88    78   146    72   220 0.75 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP      PF01053.15   386 sp|Q7CH66|BIOF_YERPE -            383     0.032   12.5   0.0   1   1   1.5e-05     0.056   11.7   0.0    58   101    87   130    82   164 0.90 Cys/Met metabolism PLP-dependent enzyme
Abhydrolase_6        PF12697.2    228 sp|Q74Y45|BIOH_YERPE -            258     4e-34  118.4   5.2   1   1   2.4e-37   4.5e-34  118.3   5.2     1   227    16   247    16   248 0.83 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|Q74Y45|BIOH_YERPE -            258   8.8e-21   74.5   0.0   1   1   5.5e-24     1e-20   74.3   0.0     1   229    40   250    40   251 0.94 alpha/beta hydrolase fold
Abhydrolase_5        PF12695.2    145 sp|Q74Y45|BIOH_YERPE -            258   4.3e-18   65.4   0.2   1   1   1.5e-20   2.8e-17   62.8   0.2     2   144    16   235    16   236 0.82 Alpha/beta hydrolase family
Thioesterase         PF00975.15   229 sp|Q74Y45|BIOH_YERPE -            258   0.00021   21.5   0.0   1   1   1.4e-07   0.00026   21.3   0.0    12   211    25   236    14   251 0.70 Thioesterase domain
PGAP1                PF07819.8    225 sp|Q74Y45|BIOH_YERPE -            258    0.0059   16.2   0.0   1   1   6.5e-06     0.012   15.2   0.0    65   126    56   113    33   166 0.74 PGAP1-like protein
Ndr                  PF03096.9    283 sp|Q74Y45|BIOH_YERPE -            258    0.0075   14.7   0.0   1   1   4.6e-06    0.0086   14.5   0.0    84   233    60   210    32   254 0.65 Ndr family
Peptidase_S9         PF00326.16   213 sp|Q74Y45|BIOH_YERPE -            258      0.13   11.4   0.0   1   1   0.00014      0.26   10.4   0.0    60    96    70   106    49   118 0.78 Prolyl oligopeptidase family
Plug                 PF07715.10   108 sp|Q8ZAA1|BTUB_YERPE -            625   9.9e-32  109.4   1.3   1   1     6e-35   4.4e-31  107.4   1.3     2   108    44   151    43   151 0.98 TonB-dependent Receptor Plug Domain
TonB_dep_Rec         PF00593.19   277 sp|Q8ZAA1|BTUB_YERPE -            625   2.3e-30  106.4  15.7   1   1   3.1e-34   2.3e-30  106.4  15.7     1   277   400   624   400   624 0.90 TonB dependent receptor
FecCD                PF01032.13   311 sp|Q8ZDX4|BTUC_YERPE -            335   1.3e-82  277.0  38.1   1   1   2.2e-86   1.6e-82  276.7  38.1     2   311    29   330    28   330 0.97 FecCD transport family
NUP                  PF06516.6    315 sp|Q8ZDX4|BTUC_YERPE -            335     0.071   11.9   0.0   1   1   1.4e-05       0.1   11.4   0.0    45    95   149   200   134   207 0.81 Purine nucleoside permease (NUP)
ABC_tran             PF00005.22   137 sp|Q8ZDX6|BTUD_YERPE -            253   3.3e-21   76.0   0.0   1   1   1.3e-23   8.6e-21   74.6   0.0     4   136    18   164    15   165 0.85 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZDX6|BTUD_YERPE -            253     1e-06   28.9   0.1   1   2   1.1e-06   0.00075   19.5   0.0     4    23    30    49    30    75 0.86 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZDX6|BTUD_YERPE -            253   8.5e-05   22.0   0.6   1   1   3.8e-07   0.00026   20.4   0.6    25    50    27    52    15    61 0.80 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZDX6|BTUD_YERPE -            253    0.0003   20.8   0.6   1   1   8.4e-07   0.00056   19.9   0.5    27    65    28    74    14   216 0.76 AAA ATPase domain
SMC_N                PF02463.14   220 sp|Q8ZDX6|BTUD_YERPE -            253   0.00043   19.5   0.0   1   1   6.1e-05     0.041   13.1   0.0    28    49    29    50    13   217 0.77 RecF/RecN/SMC N terminal domain
SbcCD_C              PF13558.1     90 sp|Q8ZDX6|BTUD_YERPE -            253    0.0053   16.6   0.0   1   1   1.9e-05     0.013   15.4   0.0    26    79   123   170   103   180 0.82 Putative exonuclease SbcCD, C subunit
AAA_5                PF07728.9    139 sp|Q8ZDX6|BTUD_YERPE -            253     0.006   16.3   0.0   1   1   1.9e-05     0.013   15.2   0.0     3    36    29    62    27    86 0.88 AAA domain (dynein-related subfamily)
MobB                 PF03205.9    140 sp|Q8ZDX6|BTUD_YERPE -            253    0.0079   15.9   0.0   1   2   7.5e-05     0.051   13.2   0.0     3    39    28    64    26    74 0.89 Molybdopterin guanine dinucleotide synthesis protein B
AAA_15               PF13175.1    415 sp|Q8ZDX6|BTUD_YERPE -            253     0.009   15.1   0.0   1   2   0.00096      0.65    8.9   0.0    21    42    19    45     6    75 0.77 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q8ZDX6|BTUD_YERPE -            253    0.0092   16.3   0.0   1   1   2.2e-05     0.014   15.6   0.0    24    43    30    49    24    82 0.89 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZDX6|BTUD_YERPE -            253     0.011   15.6   0.0   1   1     3e-05      0.02   14.7   0.0     4    43    30    81    28   206 0.74 AAA domain
AAA_30               PF13604.1    196 sp|Q8ZDX6|BTUD_YERPE -            253     0.014   14.9   0.2   1   1     4e-05     0.027   14.0   0.0    15    63    23    71    15   122 0.77 AAA domain
Mg_chelatase         PF01078.16   207 sp|Q8ZDX6|BTUD_YERPE -            253     0.018   14.2   0.1   1   1   4.5e-05      0.03   13.4   0.1    24    50    27    53    14    86 0.81 Magnesium chelatase, subunit ChlI
DUF258               PF03193.11   161 sp|Q8ZDX6|BTUD_YERPE -            253     0.034   13.3   0.0   1   1   7.2e-05     0.048   12.8   0.0    25    58    14    48     3   102 0.77 Protein of unknown function, DUF258
AAA                  PF00004.24   132 sp|Q8ZDX6|BTUD_YERPE -            253     0.048   13.8   0.0   1   1   0.00014     0.097   12.8   0.0     2    54    29    81    28    90 0.78 ATPase family associated with various cellular activities (AAA)
NACHT                PF05729.7    166 sp|Q8ZDX6|BTUD_YERPE -            253     0.056   13.1   0.1   1   1   0.00018      0.12   12.0   0.1     3    24    28    49    26    57 0.86 NACHT domain
AAA_17               PF13207.1    121 sp|Q8ZDX6|BTUD_YERPE -            253     0.056   14.2   0.0   1   1   0.00025      0.17   12.7   0.0     2    23    28    49    28    92 0.81 AAA domain
Miro                 PF08477.8    119 sp|Q8ZDX6|BTUD_YERPE -            253     0.061   13.8   0.0   1   1   0.00018      0.12   12.8   0.0     2    25    28    51    27   123 0.78 Miro-like protein
AAA_28               PF13521.1    163 sp|Q8ZDX6|BTUD_YERPE -            253     0.063   13.2   0.0   1   1   0.00026      0.18   11.7   0.0     2    21    28    47    27    87 0.84 AAA domain
SRP54                PF00448.17   196 sp|Q8ZDX6|BTUD_YERPE -            253     0.068   12.6   0.1   1   1   0.00019      0.13   11.6   0.1     4    30    28    54    26    60 0.84 SRP54-type protein, GTPase domain
AAA_22               PF13401.1    131 sp|Q8ZDX6|BTUD_YERPE -            253     0.083   13.0   0.0   1   1   0.00031      0.21   11.7   0.0     9    30    30    51    23   197 0.77 AAA domain
Peripla_BP_2         PF01497.13   238 sp|Q8ZBM3|BTUF_YERPE -            280   1.6e-31  109.2   0.0   1   1   2.8e-35   2.1e-31  108.9   0.0     1   205    31   226    31   234 0.92 Periplasmic binding protein
DUF2493              PF10686.4     71 sp|Q8ZBM3|BTUF_YERPE -            280     0.093   12.2   0.0   2   2   6.1e-05      0.45   10.0   0.0     5    67   186   250   183   254 0.82 Protein of unknown function (DUF2493)
Cytochrom_B_N        PF00033.14   188 sp|Q9X6B2|C561_YERPE -            176   1.1e-22   80.3  16.0   1   1   3.2e-26   1.2e-22   80.2  16.0     2   187     3   172     2   173 0.97 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|Q9X6B2|C561_YERPE -            176   1.4e-19   70.1  14.7   1   1   4.5e-23   1.7e-19   69.9  14.7     2   181     5   172     4   173 0.89 Prokaryotic cytochrome b561
DUF3784              PF12650.2     97 sp|Q9X6B2|C561_YERPE -            176     0.086   12.7   0.4   2   2   2.3e-05     0.086   12.7   0.4     4    70    94   160    88   170 0.78 Domain of unknown function (DUF3784)
DUF2873              PF11395.3     43 sp|Q9X6B2|C561_YERPE -            176      0.13   11.8   0.4   1   3   3.5e-05      0.13   11.8   0.4    10    35     5    30     3    33 0.84 Protein of unknown function (DUF2873)
Cytochrom_B562       PF07361.6    103 sp|Q9X6B1|C5621_YERPE -            127     2e-31  108.4   0.1   1   1   1.6e-35   2.3e-31  108.2   0.1     1   103    22   127    22   127 0.99 Cytochrome b562
Cytochrom_B562       PF07361.6    103 sp|Q8ZAU2|C5622_YERPE -            128   4.7e-35  120.1   3.0   1   1   1.5e-38   5.5e-35  119.8   3.0     2   103    24   128    23   128 0.98 Cytochrome b562
Cytochrom_C_2        PF01322.15   122 sp|Q8ZAU2|C5622_YERPE -            128     0.039   14.5   0.8   2   2   3.5e-05      0.13   12.8   0.8    44   122    45   128    20   128 0.78 Cytochrome C'
DUF2470              PF10615.4     83 sp|Q8ZAU2|C5622_YERPE -            128     0.055   13.7   0.1   1   1   2.6e-05     0.095   12.9   0.1    22    70    26    75    23    88 0.79 Protein of unknown function (DUF2470)
4HB_MCP_1            PF12729.2    181 sp|Q8ZAU2|C5622_YERPE -            128      0.09   12.1   1.4   1   1    0.0002      0.74    9.1   0.1   103   157    72   125    68   128 0.73 Four helix bundle sensory module for signal transduction
Usher                PF00577.15   552 sp|P26949|CAF1A_YERPE -            833  5.7e-190  632.7  20.8   1   1  1.9e-193    7e-190  632.3  20.8     1   552   186   740   186   740 0.98 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P26949|CAF1A_YERPE -            833   4.4e-44  149.5   0.0   1   1   2.5e-47   9.2e-44  148.5   0.0     1   145    24   170    24   171 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P26949|CAF1A_YERPE -            833   1.1e-21   76.1   0.5   2   2   1.9e-24   7.1e-21   73.6   0.0     2    67   751   817   750   818 0.93 PapC C-terminal domain
PapD_N               PF00345.15   122 sp|P26926|CAF1M_YERPE -            258   1.5e-37  128.0   0.0   1   1   3.1e-41   2.3e-37  127.4   0.0     1   122    36   171    36   171 0.90 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P26926|CAF1M_YERPE -            258   5.1e-17   61.4   0.0   2   2     5e-20   3.7e-16   58.6   0.0     2    65   191   250   190   253 0.94 Pili assembly chaperone PapD, C-terminal domain
PEPcase              PF00311.12   794 sp|Q8ZA84|CAPP_YERPE -            878  6.6e-288  956.9   0.0   1   1  1.1e-291  8.2e-288  956.6   0.0     2   794   128   878   127   878 0.98 Phosphoenolpyruvate carboxylase
PEPcase_2            PF14010.1    491 sp|Q8ZA84|CAPP_YERPE -            878   3.1e-05   22.4   0.0   1   1   6.8e-09   5.1e-05   21.7   0.0   156   257   487   588   464   595 0.84 Phosphoenolpyruvate carboxylase
CPSase_sm_chain      PF00988.17   131 sp|Q8ZIL5|CARA_YERPE -            391   2.4e-56  188.8   0.1   1   1   1.1e-59     4e-56  188.0   0.1     2   131     4   133     3   133 0.99 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase               PF00117.23   192 sp|Q8ZIL5|CARA_YERPE -            391   4.7e-47  159.9   0.0   1   1   2.2e-50   8.3e-47  159.1   0.0     3   191   197   372   195   373 0.95 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|Q8ZIL5|CARA_YERPE -            391   2.6e-06   27.0   0.0   1   1   8.7e-09   3.2e-05   23.4   0.0    93   130   249   286   231   355 0.70 Peptidase C26
DJ-1_PfpI            PF01965.19   147 sp|Q8ZIL5|CARA_YERPE -            391     0.066   12.6   0.1   1   1   3.6e-05      0.14   11.6   0.1    25    91   220   282   213   319 0.82 DJ-1/PfpI family
CPSase_L_D2          PF02786.12   211 sp|Q8ZIL4|CARB_YERPE -           1077  7.6e-116  384.7   1.0   1   2   1.2e-79   1.4e-76  256.4   0.0     1   210   128   334   128   335 0.99 Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D2          PF02786.12   211 sp|Q8ZIL4|CARB_YERPE -           1077  7.6e-116  384.7   1.0   2   2   4.7e-40   5.9e-37  127.0   0.2     1   210   674   876   674   877 0.96 Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_chain       PF00289.17   110 sp|Q8ZIL4|CARB_YERPE -           1077   1.8e-45  153.5   0.0   1   2   1.4e-24   1.7e-21   76.3   0.1     1   110     6   123     6   123 0.98 Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_chain       PF00289.17   110 sp|Q8ZIL4|CARB_YERPE -           1077   1.8e-45  153.5   0.0   2   2   5.6e-24   6.9e-21   74.4   0.0     4   110   561   669   558   669 0.97 Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_D3          PF02787.14   123 sp|Q8ZIL4|CARB_YERPE -           1077     4e-43  146.0   0.1   2   2   4.1e-45   5.1e-42  142.5   0.0     2   123   425   547   424   547 0.97 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATP-grasp_4          PF13535.1    184 sp|Q8ZIL4|CARB_YERPE -           1077   2.8e-41  141.2   0.1   1   2   8.8e-22   1.1e-18   67.6   0.0     4   182   128   307   125   309 0.91 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|Q8ZIL4|CARB_YERPE -           1077   2.8e-41  141.2   0.1   2   2   8.5e-23     1e-19   70.9   0.1     2   180   672   847   671   849 0.91 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|Q8ZIL4|CARB_YERPE -           1077   1.4e-24   86.4   0.3   1   3   1.2e-06    0.0015   17.3   0.0    39   160    59   178    29   209 0.83 ATP-grasp in the biosynthetic pathway with Ter operon
ATPgrasp_Ter         PF15632.1    330 sp|Q8ZIL4|CARB_YERPE -           1077   1.4e-24   86.4   0.3   2   3   2.3e-05     0.028   13.1   0.0   251   309   272   333   215   349 0.85 ATP-grasp in the biosynthetic pathway with Ter operon
ATPgrasp_Ter         PF15632.1    330 sp|Q8ZIL4|CARB_YERPE -           1077   1.4e-24   86.4   0.3   3   3   1.1e-16   1.3e-13   50.3   0.1    54   311   622   877   602   895 0.78 ATP-grasp in the biosynthetic pathway with Ter operon
MGS                  PF02142.17    95 sp|Q8ZIL4|CARB_YERPE -           1077   1.7e-19   69.5   0.0   2   2   1.5e-21   1.9e-18   66.1   0.0     2    94   957  1041   956  1042 0.97 MGS-like domain
ATP-grasp            PF02222.17   172 sp|Q8ZIL4|CARB_YERPE -           1077   6.2e-13   48.4   0.1   1   2   2.5e-08   3.1e-05   23.3   0.0     2   161   137   304   136   312 0.86 ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|Q8ZIL4|CARB_YERPE -           1077   6.2e-13   48.4   0.1   2   2   4.4e-08   5.4e-05   22.6   0.0     3   161   684   846   682   849 0.87 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|Q8ZIL4|CARB_YERPE -           1077   2.6e-10   40.3   1.0   1   2   0.00059      0.73    9.6   0.1    30   158   162   304   143   307 0.73 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|Q8ZIL4|CARB_YERPE -           1077   2.6e-10   40.3   1.0   2   2   8.9e-10   1.1e-06   28.6   0.0     3   158   674   846   672   849 0.80 ATP-grasp domain
Dala_Dala_lig_C      PF07478.8    203 sp|Q8ZIL4|CARB_YERPE -           1077   5.5e-10   38.9   0.1   1   2   0.00012      0.15   11.4   0.0    23   173   153   302   135   312 0.76 D-ala D-ala ligase C-terminus
Dala_Dala_lig_C      PF07478.8    203 sp|Q8ZIL4|CARB_YERPE -           1077   5.5e-10   38.9   0.1   2   2   8.2e-09     1e-05   25.0   0.0     5   173   685   844   681   868 0.80 D-ala D-ala ligase C-terminus
SmpA_OmlA            PF04355.8     71 sp|Q8ZIL4|CARB_YERPE -           1077     0.019   14.5   0.0   1   1   3.4e-05     0.042   13.4   0.0    26    63   997  1042   995  1045 0.86 SmpA / OmlA family
PolyA_pol            PF01743.15   126 sp|Q8ZI64|CCA_YERPE  -            412   4.1e-24   85.2   0.0   1   1   2.3e-27   1.1e-23   83.7   0.0     1   126     3   122     3   122 0.87 Poly A polymerase head domain
PolyA_pol_RNAbd      PF12627.2     64 sp|Q8ZI64|CCA_YERPE  -            412     4e-17   61.5   0.0   1   1   2.1e-20     1e-16   60.2   0.0     1    61   149   211   149   214 0.97 Probable RNA and SrmB- binding site of polymerase A
HD                   PF01966.17   122 sp|Q8ZI64|CCA_YERPE  -            412   2.7e-13   50.0   1.4   1   1   5.8e-17   2.9e-13   49.9   0.3     2    94   229   310   228   345 0.86 HD domain
ABC_tran             PF00005.22   137 sp|Q8ZD58|CCMA_YERPE -            218   5.9e-30  104.3   0.0   1   1   2.4e-32   1.8e-29  102.7   0.0     2   136    18   157    17   158 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZD58|CCMA_YERPE -            218   3.1e-10   40.5   0.0   1   2   1.5e-07   0.00011   22.2   0.0     6    37    34    67    34   102 0.70 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZD58|CCMA_YERPE -            218   3.1e-10   40.5   0.0   2   2   8.1e-06    0.0063   16.5   0.0   230   299   123   189   119   190 0.94 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZD58|CCMA_YERPE -            218   8.4e-06   25.1   0.0   2   2     7e-06    0.0055   15.9   0.0   133   208   126   197    51   209 0.76 RecF/RecN/SMC N terminal domain
UPF0079              PF02367.12   123 sp|Q8ZD58|CCMA_YERPE -            218    0.0043   16.6   0.0   1   1   1.1e-05    0.0083   15.7   0.0     8    37    20    49    14    59 0.78 Uncharacterised P-loop hydrolase UPF0079
DUF3584              PF12128.3   1201 sp|Q8ZD58|CCMA_YERPE -            218    0.0043   14.4   0.0   1   1   7.2e-06    0.0056   14.0   0.0    18    37    28    47    23    48 0.87 Protein of unknown function (DUF3584)
AAA_23               PF13476.1    202 sp|Q8ZD58|CCMA_YERPE -            218    0.0046   17.3   0.0   1   1   7.7e-06     0.006   16.9   0.0     5    37     5    45     2    71 0.79 AAA domain
AAA_30               PF13604.1    196 sp|Q8ZD58|CCMA_YERPE -            218    0.0061   16.1   0.0   1   1   3.5e-05     0.028   14.0   0.0    18    49    27    58    20    60 0.87 AAA domain
DUF258               PF03193.11   161 sp|Q8ZD58|CCMA_YERPE -            218    0.0087   15.2   0.0   1   1   1.9e-05     0.015   14.5   0.0    18    71     9    63     2    89 0.83 Protein of unknown function, DUF258
NACHT                PF05729.7    166 sp|Q8ZD58|CCMA_YERPE -            218     0.029   14.0   0.1   1   1   0.00016      0.13   11.9   0.0     3    24    30    51    28    59 0.81 NACHT domain
Thymidylate_kin      PF02223.12   186 sp|Q8ZD58|CCMA_YERPE -            218      0.03   13.7   0.0   1   2   0.00043      0.34   10.2   0.0     1    22    32    53    32   121 0.77 Thymidylate kinase
AAA_35               PF14516.1    331 sp|Q8ZD58|CCMA_YERPE -            218     0.044   12.4   0.0   1   1   8.7e-05     0.068   11.7   0.0    29    57    25    53    15    76 0.79 AAA-like domain
AAA_16               PF13191.1    185 sp|Q8ZD58|CCMA_YERPE -            218     0.051   13.5   0.1   1   1   8.7e-05     0.068   13.1   0.1    23    54    26    57    15   184 0.81 AAA ATPase domain
AAA_13               PF13166.1    712 sp|Q8ZD58|CCMA_YERPE -            218     0.071   11.5   0.0   1   1   0.00011     0.087   11.2   0.0    23    59    34    64    27    96 0.84 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZD58|CCMA_YERPE -            218     0.075   12.5   0.0   1   1   0.00025       0.2   11.2   0.0    12    40    17    44    15    50 0.84 P-loop containing region of AAA domain
AAA_15               PF13175.1    415 sp|Q8ZD58|CCMA_YERPE -            218       0.1   11.6   0.0   1   1   0.00026       0.2   10.6   0.0    22    43    19    62     2   108 0.68 AAA ATPase domain
AAA_22               PF13401.1    131 sp|Q8ZD58|CCMA_YERPE -            218       0.1   12.7   0.0   1   1   0.00021      0.17   12.0   0.0     5    29    28    52    25   185 0.87 AAA domain
AAA_19               PF13245.1     76 sp|Q8ZD58|CCMA_YERPE -            218      0.11   12.2   0.0   1   1   0.00045      0.35   10.6   0.0    11    37    28    53    21    71 0.81 Part of AAA domain
MobB                 PF03205.9    140 sp|Q8ZD58|CCMA_YERPE -            218      0.12   12.0   0.0   1   1   0.00052      0.41   10.3   0.0     2    26    29    53    28    64 0.85 Molybdopterin guanine dinucleotide synthesis protein B
AAA_17               PF13207.1    121 sp|Q8ZD58|CCMA_YERPE -            218      0.15   12.8   0.1   1   1   0.00036      0.28   12.0   0.1     4    21    32    49    29   142 0.80 AAA domain
CcmE                 PF03100.10   131 sp|Q8ZD54|CCME_YERPE -            164   2.6e-50  169.3   0.0   1   1   2.2e-54   3.3e-50  169.0   0.0     2   131     3   138     2   138 0.97 CcmE
dCMP_cyt_deam_2      PF08211.6    124 sp|Q8ZG08|CDD_YERPE  -            294   5.3e-53  178.2   0.6   2   2   5.7e-55   1.2e-51  173.8   0.2     1   122   157   278   157   280 0.98 Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_1      PF00383.17   102 sp|Q8ZG08|CDD_YERPE  -            294   2.3e-16   59.2   0.8   1   2   1.3e-16   2.7e-13   49.4   0.0    18    94    64   140    48   147 0.85 Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam          PF14437.1    146 sp|Q8ZG08|CDD_YERPE  -            294    0.0055   16.3   0.0   1   1   7.4e-06     0.016   14.8   0.0    78   125    98   143    84   152 0.89 MafB19-like deaminase
SCP1201-deam         PF14428.1    136 sp|Q8ZG08|CDD_YERPE  -            294     0.015   15.0   0.1   1   1   1.5e-05     0.032   13.9   0.1    81   128   112   155    90   162 0.72 SCP1.201-like deaminase
OTT_1508_deam        PF14441.1    143 sp|Q8ZG08|CDD_YERPE  -            294     0.026   14.3   0.1   1   1   2.6e-05     0.055   13.2   0.0    66   115    99   146    36   157 0.84 OTT_1508-like deaminase
DYW_deaminase        PF14432.1    116 sp|Q8ZG08|CDD_YERPE  -            294     0.042   13.8   0.0   1   1   3.9e-05     0.083   12.8   0.0    62   106   101   149    89   154 0.89 DYW family of nucleic acid deaminases
Pput2613-deam        PF14427.1    118 sp|Q8ZG08|CDD_YERPE  -            294       0.1   12.2   0.0   1   1   8.2e-05      0.17   11.5   0.0    61    96   113   147    80   153 0.76 Pput_2613-like deaminase
CDH                  PF02611.10   222 sp|Q8ZA34|CDH_YERPE  -            258   8.8e-93  309.6   0.0   1   1   1.4e-96     1e-92  309.4   0.0     2   221    33   252    32   253 0.99 CDP-diacylglycerol pyrophosphatase
Flg_hook             PF02120.11    85 sp|Q8ZA34|CDH_YERPE  -            258     0.094   12.3   0.0   1   1   2.8e-05      0.21   11.2   0.0    35    63   138   166   135   169 0.93 Flagellar hook-length control protein FliK
Cpn10                PF00166.16    93 sp|Q8ZIY4|CH10_YERPE -             97   1.5e-28   98.5   2.0   1   1   1.1e-32   1.6e-28   98.4   2.0     1    93     2    95     2    95 0.98 Chaperonin 10 Kd subunit
Cpn60_TCP1           PF00118.19   485 sp|Q8ZIY3|CH60_YERPE -            548  3.4e-125  418.4  12.8   1   1  2.6e-129  3.9e-125  418.2  12.8     1   483    23   523    23   525 0.93 TCP-1/cpn60 chaperonin family
YdjC                 PF04794.7    261 sp|Q8ZDA6|CHBG_YERPE -            253   9.7e-75  251.4   0.0   1   1   7.3e-79   1.1e-74  251.2   0.0     2   260     4   242     3   243 0.93 YdjC-like protein
CheZ                 PF04344.8    214 sp|Q7CIX9|CHEZ_YERPE -            214   4.1e-74  248.8   2.3   1   1   3.3e-78   4.9e-74  248.5   2.3     2   214    15   214    14   214 0.94 Chemotaxis phosphatase, CheZ
Voltage_CLC          PF00654.15   355 sp|Q8ZBM0|CLCA_YERPE -            478   3.1e-92  309.3  40.8   1   2   2.9e-07    0.0022   17.0   1.3   158   220    30    96    13    98 0.73 Voltage gated chloride channel
Voltage_CLC          PF00654.15   355 sp|Q8ZBM0|CLCA_YERPE -            478   3.1e-92  309.3  40.8   2   2   1.1e-92   8.2e-89  298.0  34.9     3   354    90   437    87   438 0.93 Voltage gated chloride channel
DUF2208              PF09973.4    233 sp|Q8ZBM0|CLCA_YERPE -            478      0.17   11.0   1.3   1   1     5e-05      0.37    9.9   1.3    81   160   201   281   199   284 0.91 Predicted membrane protein (DUF2208)
Voltage_CLC          PF00654.15   355 sp|Q8ZEB3|CLCB_YERPE -            414   2.6e-75  253.6  34.9   2   2   1.7e-79   2.6e-75  253.6  34.9     3   355    61   404    59   404 0.90 Voltage gated chloride channel
AAA_2                PF07724.9    171 sp|Q74X11|CLPB_YERPE -            857   1.4e-59  200.8   0.0   2   2   2.3e-59   7.8e-57  191.9   0.0     1   171   596   760   596   760 0.98 AAA domain (Cdc48 subfamily)
AAA                  PF00004.24   132 sp|Q74X11|CLPB_YERPE -            857   2.4e-27   95.7   0.2   1   2   3.3e-16   1.2e-13   51.4   0.0     2   126   203   335   202   340 0.80 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|Q74X11|CLPB_YERPE -            857   2.4e-27   95.7   0.2   2   2   5.8e-13     2e-10   40.9   0.0     2   118   602   728   601   740 0.86 ATPase family associated with various cellular activities (AAA)
Clp_N                PF02861.15    53 sp|Q74X11|CLPB_YERPE -            857   4.3e-27   93.7   1.8   1   2   6.8e-18   2.3e-15   56.2   0.1     1    53    17    69    17    69 0.99 Clp amino terminal domain
Clp_N                PF02861.15    53 sp|Q74X11|CLPB_YERPE -            857   4.3e-27   93.7   1.8   2   2   1.7e-11   5.7e-09   35.7   0.0     1    53    94   145    94   145 0.96 Clp amino terminal domain
ClpB_D2-small        PF10431.4     81 sp|Q74X11|CLPB_YERPE -            857   1.9e-26   91.7   0.6   1   1   3.1e-28   1.1e-25   89.3   0.0     1    79   766   844   766   846 0.95 C-terminal, D2-small domain, of ClpB protein
AAA_5                PF07728.9    139 sp|Q74X11|CLPB_YERPE -            857   2.3e-19   69.4   0.4   1   2     3e-05      0.01   15.5   0.0     3    34   203   235   201   284 0.72 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|Q74X11|CLPB_YERPE -            857   2.3e-19   69.4   0.4   2   2   8.7e-16     3e-13   49.6   0.0     2   124   601   721   600   733 0.85 AAA domain (dynein-related subfamily)
AAA_16               PF13191.1    185 sp|Q74X11|CLPB_YERPE -            857   6.5e-16   58.8   4.0   1   3   2.4e-07   8.2e-05   22.6   0.0     2    48   180   223   179   242 0.89 AAA ATPase domain
AAA_16               PF13191.1    185 sp|Q74X11|CLPB_YERPE -            857   6.5e-16   58.8   4.0   2   3   0.00056      0.19   11.6   0.0   125   160   246   281   239   305 0.90 AAA ATPase domain
AAA_16               PF13191.1    185 sp|Q74X11|CLPB_YERPE -            857   6.5e-16   58.8   4.0   3   3   2.1e-06   0.00072   19.5   0.0     2    63   570   637   569   653 0.86 AAA ATPase domain
Sigma54_activat      PF00158.21   168 sp|Q74X11|CLPB_YERPE -            857   6.1e-09   35.5   0.0   2   2   1.1e-08   3.9e-06   26.4   0.0    23   159   599   734   570   743 0.76 Sigma-54 interaction domain
AAA_22               PF13401.1    131 sp|Q74X11|CLPB_YERPE -            857   1.1e-08   35.3   3.5   1   2   1.5e-05     0.005   16.9   0.0     4    99   199   283   195   301 0.76 AAA domain
AAA_22               PF13401.1    131 sp|Q74X11|CLPB_YERPE -            857   1.1e-08   35.3   3.5   2   2     9e-05     0.031   14.4   0.1     5   113   599   695   596   718 0.74 AAA domain
AAA_17               PF13207.1    121 sp|Q74X11|CLPB_YERPE -            857   1.7e-08   35.2   1.8   1   2   0.00017      0.06   14.1   0.7     4    64   204   280   203   502 0.79 AAA domain
AAA_17               PF13207.1    121 sp|Q74X11|CLPB_YERPE -            857   1.7e-08   35.2   1.8   2   2   7.4e-06    0.0026   18.5   0.0     6    43   605   664   601   794 0.62 AAA domain
AAA_18               PF13238.1    129 sp|Q74X11|CLPB_YERPE -            857   3.9e-07   30.4   3.6   1   3   0.00061      0.21   11.8   0.1     3    66   204   269   203   283 0.62 AAA domain
AAA_18               PF13238.1    129 sp|Q74X11|CLPB_YERPE -            857   3.9e-07   30.4   3.6   2   3   0.00045      0.16   12.3   0.0     3    21   603   621   602   666 0.80 AAA domain
IstB_IS21            PF01695.12   178 sp|Q74X11|CLPB_YERPE -            857   8.6e-07   28.5   0.0   1   2   0.00021     0.071   12.5   0.0    45    73   197   225   173   268 0.79 IstB-like ATP binding protein
IstB_IS21            PF01695.12   178 sp|Q74X11|CLPB_YERPE -            857   8.6e-07   28.5   0.0   2   2   0.00045      0.15   11.4   0.0    50    73   601   624   598   646 0.80 IstB-like ATP binding protein
Arch_ATPase          PF01637.13   234 sp|Q74X11|CLPB_YERPE -            857   9.8e-06   25.4   0.2   1   2   0.00067      0.23   11.1   0.1     3    44   182   223   180   365 0.73 Archaeal ATPase
AAA_25               PF13481.1    194 sp|Q74X11|CLPB_YERPE -            857   2.2e-05   23.9   0.3   2   3    0.0014      0.48    9.8   0.0    37    97   203   266   184   308 0.73 AAA domain
Mg_chelatase         PF01078.16   207 sp|Q74X11|CLPB_YERPE -            857   0.00011   21.4   0.1   2   2    0.0017       0.6    9.2   0.0    24    52   600   628   568   722 0.86 Magnesium chelatase, subunit ChlI
Zeta_toxin           PF06414.7    201 sp|Q74X11|CLPB_YERPE -            857   0.00041   19.5   0.0   2   2   0.00022     0.077   12.0   0.0    19    60   601   653   584   691 0.81 Zeta toxin
NACHT                PF05729.7    166 sp|Q74X11|CLPB_YERPE -            857   0.00047   19.8   0.0   1   2   0.00023      0.08   12.6   0.0     4    40   203   240   201   287 0.86 NACHT domain
AAA_23               PF13476.1    202 sp|Q74X11|CLPB_YERPE -            857   0.00075   19.8  16.3   1   1   0.00046      0.16   12.2   0.0    20    56   599   635   593   831 0.63 AAA domain
AAA_19               PF13245.1     76 sp|Q74X11|CLPB_YERPE -            857   0.00094   18.8   0.0   1   2   0.00038      0.13   12.0   0.0     8    39   199   227   192   259 0.79 Part of AAA domain
MobB                 PF03205.9    140 sp|Q74X11|CLPB_YERPE -            857    0.0013   18.3   0.1   2   2    0.0022      0.77    9.4   0.0     4    27   602   625   600   635 0.86 Molybdopterin guanine dinucleotide synthesis protein B
AAA_24               PF13479.1    213 sp|Q74X11|CLPB_YERPE -            857    0.0017   17.9   0.0   2   2   0.00047      0.16   11.5   0.0     6    42   601   636   599   703 0.70 AAA domain
Ribosomal_S7         PF00177.16   148 sp|Q74X11|CLPB_YERPE -            857    0.0018   17.8   0.0   1   1   1.1e-05    0.0039   16.7   0.0    43   146   188   286   184   288 0.94 Ribosomal protein S7p/S5e
DUF815               PF05673.8    250 sp|Q74X11|CLPB_YERPE -            857    0.0021   17.0   0.0   1   2    0.0013      0.44    9.4   0.0    41    81   187   227   159   283 0.71 Protein of unknown function (DUF815)
T2SE                 PF00437.15   272 sp|Q74X11|CLPB_YERPE -            857    0.0048   15.8   0.1   1   1   7.8e-05     0.027   13.3   0.0   126   207   596   679   466   693 0.81 Type II/IV secretion system protein
DNA_pol3_delta2      PF13177.1    162 sp|Q74X11|CLPB_YERPE -            857     0.016   14.8   0.0   1   1    0.0024      0.84    9.2   0.0    21   127   600   695   582   698 0.74 DNA polymerase III, delta subunit
Miro                 PF08477.8    119 sp|Q74X11|CLPB_YERPE -            857      0.04   14.3   0.0   1   1    0.0027      0.94    9.9   0.0     3    38   203   237   202   269 0.84 Miro-like protein
Torsin               PF06309.6    127 sp|Q74X11|CLPB_YERPE -            857     0.041   13.7   0.0   1   1     0.001      0.34   10.7   0.0    16    80   559   625   551   643 0.84 Torsin
EHN                  PF06441.7    112 sp|Q74X11|CLPB_YERPE -            857      0.06   13.2   1.3   1   1    0.0005      0.17   11.8   1.3     5    82   405   486   402   496 0.83 Epoxide hydrolase N terminus
CLP_protease         PF00574.18   182 sp|Q8ZC65|CLPP_YERPE -            207   2.6e-85  284.6   0.0   1   1     2e-89     3e-85  284.4   0.0     1   181    25   205    25   206 0.99 Clp protease
ClpS                 PF02617.12    82 sp|Q8ZGD5|CLPS_YERPE -            106   1.7e-34  117.3   0.1   1   1   1.5e-38   2.2e-34  117.0   0.1     2    82    23   103    22   103 0.98 ATP-dependent Clp protease adaptor protein ClpS
AAA_2                PF07724.9    171 sp|Q8ZC66|CLPX_YERPE -            423   1.3e-48  165.1   0.0   1   1   4.5e-51     2e-48  164.5   0.0     3   170   112   310   110   311 0.97 AAA domain (Cdc48 subfamily)
zf-C4_ClpX           PF06689.8     41 sp|Q8ZC66|CLPX_YERPE -            423   2.5e-22   78.1   3.5   1   1   1.5e-24   6.8e-22   76.7   3.5     2    41    13    51    12    51 0.97 ClpX C4-type zinc finger
ClpB_D2-small        PF10431.4     81 sp|Q8ZC66|CLPX_YERPE -            423   8.6e-18   64.0   1.3   1   1   4.1e-20   1.9e-17   62.9   0.2     1    74   317   394   317   399 0.95 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|Q8ZC66|CLPX_YERPE -            423   1.4e-15   57.6   0.0   1   1   6.9e-18   3.1e-15   56.5   0.0     1    96   115   218   115   249 0.84 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|Q8ZC66|CLPX_YERPE -            423   9.4e-07   28.1   0.1   1   2   2.8e-07   0.00012   21.2   0.2    21    54   111   145    75   168 0.86 Magnesium chelatase, subunit ChlI
AAA_5                PF07728.9    139 sp|Q8ZC66|CLPX_YERPE -            423     1e-06   28.4   0.0   1   1   1.5e-08     7e-06   25.8   0.1     1    79   114   191   114   195 0.74 AAA domain (dynein-related subfamily)
AAA_22               PF13401.1    131 sp|Q8ZC66|CLPX_YERPE -            423   6.5e-06   26.3   0.2   1   1   1.4e-07   6.2e-05   23.1   0.2     4    98   112   188   108   215 0.64 AAA domain
RuvB_N               PF05496.7    234 sp|Q8ZC66|CLPX_YERPE -            423     1e-05   24.6   0.0   1   1   4.9e-08   2.2e-05   23.6   0.0    16   116    68   192    53   196 0.71 Holliday junction DNA helicase ruvB N-terminus
AAA_17               PF13207.1    121 sp|Q8ZC66|CLPX_YERPE -            423   2.8e-05   24.9   0.0   1   1   4.8e-07   0.00022   22.0   0.0     2    46   115   161   114   228 0.65 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZC66|CLPX_YERPE -            423   0.00018   21.5   0.1   1   1   1.7e-06   0.00078   19.4   0.1    19    51    99   139    90   221 0.74 AAA ATPase domain
AAA_18               PF13238.1    129 sp|Q8ZC66|CLPX_YERPE -            423   0.00062   20.0   0.0   1   1   3.2e-06    0.0015   18.8   0.0     1    56   115   174   115   204 0.65 AAA domain
MCM                  PF00493.18   331 sp|Q8ZC66|CLPX_YERPE -            423   0.00063   18.6   0.0   1   1   2.4e-06    0.0011   17.8   0.0    18   137    70   193    50   200 0.77 MCM2/3/5 family
Sigma54_activ_2      PF14532.1    138 sp|Q8ZC66|CLPX_YERPE -            423   0.00066   19.7   0.0   1   1   4.1e-06    0.0018   18.3   0.0    21    84   112   192   107   196 0.79 Sigma-54 interaction domain
Sigma54_activat      PF00158.21   168 sp|Q8ZC66|CLPX_YERPE -            423   0.00067   19.1   0.0   1   2   0.00034      0.15   11.5   0.0    21    44   111   134    92   154 0.85 Sigma-54 interaction domain
AAA_14               PF13173.1    128 sp|Q8ZC66|CLPX_YERPE -            423    0.0013   18.5   0.0   1   1   6.2e-06    0.0028   17.5   0.0     4    74   114   190   111   218 0.67 AAA domain
IstB_IS21            PF01695.12   178 sp|Q8ZC66|CLPX_YERPE -            423    0.0019   17.6   0.1   1   1   7.6e-06    0.0034   16.8   0.1    47    68   112   133   108   136 0.92 IstB-like ATP binding protein
T2SE                 PF00437.15   272 sp|Q8ZC66|CLPX_YERPE -            423    0.0022   16.9   0.0   1   1   8.8e-06     0.004   16.1   0.0   128   151   112   135    67   147 0.82 Type II/IV secretion system protein
AAA_33               PF13671.1    143 sp|Q8ZC66|CLPX_YERPE -            423    0.0026   17.6   0.0   1   1   1.2e-05    0.0054   16.6   0.0     2    35   115   150   115   218 0.73 AAA domain
AAA_19               PF13245.1     76 sp|Q8ZC66|CLPX_YERPE -            423    0.0061   16.2   0.0   1   1   3.4e-05     0.015   15.0   0.0    10    42   113   137   107   170 0.76 Part of AAA domain
ABC_tran             PF00005.22   137 sp|Q8ZC66|CLPX_YERPE -            423     0.007   16.6   0.0   1   1   4.5e-05      0.02   15.1   0.0    12    37   113   138   103   222 0.71 ABC transporter
NACHT                PF05729.7    166 sp|Q8ZC66|CLPX_YERPE -            423    0.0071   16.0   0.0   1   2   0.00025      0.11   12.0   0.0     3    24   115   136   113   148 0.89 NACHT domain
TIP49                PF06068.8    398 sp|Q8ZC66|CLPX_YERPE -            423     0.011   14.4   0.0   1   1     6e-05     0.027   13.1   0.0    48    88   110   148    66   178 0.73 TIP49 C-terminus
DEAD                 PF00270.24   169 sp|Q8ZC66|CLPX_YERPE -            423     0.018   14.5   0.5   1   1   0.00014     0.061   12.8   0.5    12    33   110   131   103   401 0.65 DEAD/DEAH box helicase
AAA_29               PF13555.1     62 sp|Q8ZC66|CLPX_YERPE -            423     0.024   14.1   0.2   1   1   0.00013     0.056   12.9   0.2    22    47   111   136   101   146 0.79 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|Q8ZC66|CLPX_YERPE -            423     0.029   13.7   0.0   1   1   0.00013     0.058   12.7   0.0    34   130   113   202   106   214 0.73 AAA domain
AAA_28               PF13521.1    163 sp|Q8ZC66|CLPX_YERPE -            423     0.029   14.3   0.0   1   1   0.00013      0.06   13.3   0.0     2    32   115   146   114   178 0.78 AAA domain
ResIII               PF04851.10   184 sp|Q8ZC66|CLPX_YERPE -            423     0.035   13.9   0.0   1   1   0.00017     0.075   12.8   0.0    20    51   109   137    89   211 0.81 Type III restriction enzyme, res subunit
PhoH                 PF02562.11   205 sp|Q8ZC66|CLPX_YERPE -            423     0.058   12.6   0.0   1   1   0.00029      0.13   11.4   0.0    19    40   112   133   100   138 0.85 PhoH-like protein
AAA_24               PF13479.1    213 sp|Q8ZC66|CLPX_YERPE -            423     0.084   12.4   0.2   1   1   0.00051      0.23   11.0   0.1     5    79   114   188   111   193 0.57 AAA domain
AAA_PrkA             PF08298.6    358 sp|Q8ZC66|CLPX_YERPE -            423       0.1   11.2   0.0   1   1   0.00036      0.16   10.6   0.0    81   114   105   138    98   174 0.86 PrkA AAA domain
RNA_helicase         PF00910.17   107 sp|Q8ZC66|CLPX_YERPE -            423      0.11   12.7   0.0   1   1   0.00065      0.29   11.3   0.0     1    25   115   139   115   203 0.70 RNA helicase
AAA_23               PF13476.1    202 sp|Q8ZC66|CLPX_YERPE -            423      0.12   12.7   1.7   1   1   0.00047      0.21   11.8   1.7    15    40   108   133    94   361 0.86 AAA domain
PLDc_2               PF13091.1    126 sp|Q8ZEI2|CLSA_YERPE -            486   1.9e-35  121.3   0.0   1   2   7.5e-16   2.8e-12   46.4   0.0     2    99   135   247   134   267 0.88 PLD-like domain
PLDc_2               PF13091.1    126 sp|Q8ZEI2|CLSA_YERPE -            486   1.9e-35  121.3   0.0   2   2   6.7e-24   2.5e-20   72.5   0.0     6   118   331   449   326   456 0.87 PLD-like domain
PLDc                 PF00614.17    28 sp|Q8ZEI2|CLSA_YERPE -            486   1.1e-13   50.5   1.6   1   2   2.6e-10   9.5e-07   28.4   0.0     2    28   220   246   219   246 0.93 Phospholipase D Active site motif
PLDc                 PF00614.17    28 sp|Q8ZEI2|CLSA_YERPE -            486   1.1e-13   50.5   1.6   2   2   6.3e-08   0.00023   20.8   0.0     2    28   400   426   399   426 0.95 Phospholipase D Active site motif
PLDc_N               PF13396.1     46 sp|Q8ZEI2|CLSA_YERPE -            486   6.5e-06   25.7   5.9   1   1   3.8e-09   1.4e-05   24.6   5.9     2    44    17    59    16    60 0.90 Phospholipase_D-nuclease N-terminal
Methyltransf_18      PF12847.2    112 sp|Q7CIB7|CMOA_YERPE -            267   1.9e-16   60.6   0.0   1   1   3.7e-19   3.2e-16   59.8   0.0     1   110    76   183    76   185 0.92 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q7CIB7|CMOA_YERPE -            267     4e-13   49.6   0.0   1   1   8.8e-16   7.7e-13   48.7   0.0     2    95    82   182    81   182 0.96 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q7CIB7|CMOA_YERPE -            267   2.4e-10   40.1   0.0   1   1   8.2e-13   7.1e-10   38.6   0.0     2   110    75   184    74   195 0.89 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q7CIB7|CMOA_YERPE -            267   1.3e-09   38.3   0.0   1   1   2.6e-12   2.3e-09   37.6   0.0     2    99    82   180    81   180 0.90 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q7CIB7|CMOA_YERPE -            267     5e-09   36.4   0.0   1   1   1.1e-11   9.4e-09   35.5   0.0     1   101    80   178    80   178 0.87 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q7CIB7|CMOA_YERPE -            267   8.6e-09   35.3   0.0   1   1   1.6e-11   1.4e-08   34.6   0.0    14   134    71   205    59   248 0.65 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|Q7CIB7|CMOA_YERPE -            267   7.6e-07   28.4   0.0   1   1   1.7e-09   1.5e-06   27.4   0.0    46   167    75   199    68   264 0.76 ubiE/COQ5 methyltransferase family
MTS                  PF05175.9    170 sp|Q7CIB7|CMOA_YERPE -            267   1.5e-06   27.6   0.0   1   1   2.5e-09   2.2e-06   27.1   0.0    22   166    68   210    64   214 0.79 Methyltransferase small domain
CheR                 PF01739.13   196 sp|Q7CIB7|CMOA_YERPE -            267   4.5e-05   22.8   0.1   1   2    0.0003      0.26   10.5   0.0    32    82    77   120    60   129 0.79 CheR methyltransferase, SAM binding domain
CheR                 PF01739.13   196 sp|Q7CIB7|CMOA_YERPE -            267   4.5e-05   22.8   0.1   2   2   0.00038      0.33   10.1   0.0   134   174   143   183   126   199 0.84 CheR methyltransferase, SAM binding domain
Rsm22                PF09243.5    275 sp|Q7CIB7|CMOA_YERPE -            267   0.00041   19.4   0.0   1   1   7.2e-07   0.00063   18.8   0.0    15   137    58   181    45   188 0.74 Mitochondrial small ribosomal subunit Rsm22
Methyltransf_26      PF13659.1    117 sp|Q7CIB7|CMOA_YERPE -            267   0.00061   19.8   0.0   1   1   1.2e-06     0.001   19.0   0.0     3   113    79   182    77   185 0.81 Methyltransferase domain
PCMT                 PF01135.14   210 sp|Q7CIB7|CMOA_YERPE -            267    0.0014   18.2   0.0   1   1     2e-06    0.0018   17.8   0.0    60   132    64   137    39   182 0.84 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PrmA                 PF06325.8    295 sp|Q7CIB7|CMOA_YERPE -            267    0.0024   17.0   0.0   1   1   3.9e-06    0.0034   16.5   0.0   156   258    71   183    64   205 0.86 Ribosomal protein L11 methyltransferase (PrmA)
RrnaAD               PF00398.15   262 sp|Q7CIB7|CMOA_YERPE -            267     0.015   14.3   0.0   1   1   2.5e-05     0.021   13.8   0.0    28    92    74   145    60   172 0.87 Ribosomal RNA adenine dimethylase
NNMT_PNMT_TEMT       PF01234.12   256 sp|Q7CIB7|CMOA_YERPE -            267     0.035   13.0   0.0   1   1   7.3e-05     0.064   12.2   0.0   138   216   128   201    94   208 0.79 NNMT/PNMT/TEMT family
UPF0020              PF01170.13   180 sp|Q7CIB7|CMOA_YERPE -            267     0.042   13.4   0.0   1   1     8e-05      0.07   12.7   0.0    51   111    94   150    60   176 0.83 Putative RNA methylase family UPF0020
FmrO                 PF07091.6    251 sp|Q7CIB7|CMOA_YERPE -            267     0.051   12.5   0.6   1   1   9.4e-05     0.082   11.8   0.0   103   185    74   159    68   171 0.72 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_9       PF08003.6    315 sp|Q7CIB6|CMOB_YERPE -            323  4.7e-165  547.8   0.0   1   1  3.6e-168  5.3e-165  547.7   0.0     1   315     7   322     7   322 1.00 Protein of unknown function (DUF1698)
Methyltransf_23      PF13489.1    161 sp|Q7CIB6|CMOB_YERPE -            323   3.1e-11   43.2   0.0   1   1   3.4e-14     5e-11   42.5   0.0    12   159   114   270    86   272 0.75 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q7CIB6|CMOB_YERPE -            323   7.7e-09   35.3   0.0   1   1   8.6e-12   1.3e-08   34.5   0.0     4   118   123   234   121   297 0.82 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CIB6|CMOB_YERPE -            323   2.3e-07   31.3   0.0   1   1   2.8e-10   4.2e-07   30.5   0.0     2   111   123   226   122   227 0.86 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q7CIB6|CMOB_YERPE -            323     2e-05   24.9   0.0   1   1     5e-08   7.4e-05   23.1   0.0     1    94   127   223   127   224 0.82 Methyltransferase domain
CMAS                 PF02353.15   273 sp|Q7CIB6|CMOB_YERPE -            323   2.5e-05   23.4   0.0   1   1   2.3e-08   3.4e-05   23.0   0.0    57   175   117   235   107   282 0.79 Mycolic acid cyclopropane synthetase
Methyltransf_12      PF08242.7     99 sp|Q7CIB6|CMOB_YERPE -            323   0.00014   22.2   0.0   1   1   1.9e-07   0.00028   21.2   0.0     1    99   127   222   127   222 0.82 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q7CIB6|CMOB_YERPE -            323   0.00044   20.5   0.0   1   1   6.2e-07   0.00093   19.5   0.0     1    83   126   205   126   217 0.76 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q7CIB6|CMOB_YERPE -            323    0.0081   16.1   0.0   1   1   1.2e-05     0.018   15.0   0.1     1    74   123   193   123   286 0.79 Methyltransferase domain
PCMT                 PF01135.14   210 sp|Q7CIB6|CMOB_YERPE -            323     0.029   13.9   0.0   1   1   2.7e-05     0.039   13.4   0.0    74   144   123   191   113   248 0.72 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PRK                  PF00485.13   194 sp|Q8ZAN6|COAA_YERPE -            316   1.7e-14   53.8   0.0   1   1   6.7e-18   2.5e-14   53.3   0.0     1   148    90   244    90   252 0.87 Phosphoribulokinase / Uridine kinase family
AAA_17               PF13207.1    121 sp|Q8ZAN6|COAA_YERPE -            316   0.00026   21.8   0.0   1   1   1.9e-07   0.00069   20.4   0.0     1   104    90   237    90   252 0.54 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZAN6|COAA_YERPE -            316    0.0017   18.6   0.0   1   1   1.6e-06    0.0058   16.9   0.0     1    39    91   133    91   244 0.56 AAA domain
CoaE                 PF01121.15   180 sp|Q8ZAN6|COAA_YERPE -            316     0.075   12.4   0.1   1   1   3.2e-05      0.12   11.7   0.1     1    23    89   111    89   115 0.91 Dephospho-CoA kinase
CTP_transf_2         PF01467.21   157 sp|Q8ZJN9|COAD_YERPE -            159   3.9e-19   69.2   0.0   1   1   9.3e-23   4.6e-19   69.0   0.0     1   156     6   134     6   135 0.94 Cytidylyltransferase
Citrate_ly_lig       PF08218.6    182 sp|Q8ZJN9|COAD_YERPE -            159   4.3e-05   23.0   0.0   1   1   1.3e-08   6.6e-05   22.4   0.0     9    69    12    74    10   115 0.86 Citrate lyase ligase C-terminal domain
CoaE                 PF01121.15   180 sp|Q8ZBI0|COAE_YERPE -            206   7.4e-73  243.7   0.2   1   1   1.1e-75   9.5e-73  243.4   0.2     1   176     3   177     3   180 0.99 Dephospho-CoA kinase
AAA_17               PF13207.1    121 sp|Q8ZBI0|COAE_YERPE -            206   7.3e-07   30.0   0.0   1   1   2.2e-09   1.9e-06   28.6   0.0     1    46     4    56     4   175 0.58 AAA domain
AAA_28               PF13521.1    163 sp|Q8ZBI0|COAE_YERPE -            206   4.9e-06   26.6   0.3   1   1   4.1e-08   3.6e-05   23.7   0.3     2    50     5    56     4   170 0.72 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZBI0|COAE_YERPE -            206   2.9e-05   24.3   0.1   1   1   1.9e-07   0.00016   21.9   0.1     1   126     5   158     5   161 0.63 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZBI0|COAE_YERPE -            206   5.8e-05   22.9   0.4   1   1   4.4e-07   0.00039   20.3   0.4     2    47     5    61     4   168 0.62 AAA domain
SKI                  PF01202.17   158 sp|Q8ZBI0|COAE_YERPE -            206   0.00037   20.3   0.0   1   2   6.6e-05     0.057   13.2   0.0     2    44    12    56    11    87 0.84 Shikimate kinase
Cytidylate_kin2      PF13189.1    179 sp|Q8ZBI0|COAE_YERPE -            206   0.00054   19.9   0.1   1   2   1.6e-05     0.014   15.3   0.0     1    55     4    59     4   107 0.74 Cytidylate kinase-like family
AAA_29               PF13555.1     62 sp|Q8ZBI0|COAE_YERPE -            206    0.0008   18.8   0.3   1   1   1.7e-06    0.0015   18.0   0.3    26    48     5    27     2    32 0.87 P-loop containing region of AAA domain
AAA_19               PF13245.1     76 sp|Q8ZBI0|COAE_YERPE -            206    0.0038   16.9   0.9   1   1   1.6e-05     0.014   15.1   0.9    12    36     4    35     3    72 0.73 Part of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZBI0|COAE_YERPE -            206     0.007   16.3   1.7   1   1   1.6e-05     0.014   15.4   1.7    26   135     4   101     2   192 0.65 AAA ATPase domain
AAA_22               PF13401.1    131 sp|Q8ZBI0|COAE_YERPE -            206     0.014   15.5   0.2   1   1   4.6e-05      0.04   14.0   0.1     5    75     3    70     2   132 0.66 AAA domain
ABC_tran             PF00005.22   137 sp|Q8ZBI0|COAE_YERPE -            206     0.016   15.4   0.4   1   1   2.8e-05     0.024   14.9   0.4    13    42     4    35     2   188 0.70 ABC transporter
Sigma54_activ_2      PF14532.1    138 sp|Q8ZBI0|COAE_YERPE -            206     0.041   13.9   0.0   1   1   8.4e-05     0.073   13.1   0.0    24    61     5    42     2    84 0.86 Sigma-54 interaction domain
Dynamin_N            PF00350.18   168 sp|Q8ZBI0|COAE_YERPE -            206     0.077   12.8   0.1   1   1   0.00013      0.11   12.2   0.1     1    36     5    40     5   129 0.76 Dynamin family
APS_kinase           PF01583.15   157 sp|Q8ZBI0|COAE_YERPE -            206     0.081   12.5   0.6   1   1   0.00037      0.33   10.6   0.3     3    23     3    23     1    36 0.89 Adenylylsulphate kinase
Hydrolase_3          PF08282.7    254 sp|Q7CK25|COF_YERPE  -            273   9.2e-53  179.4   0.0   1   1   3.5e-56     1e-52  179.2   0.0     2   254     6   258     5   258 0.99 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|Q7CK25|COF_YERPE  -            273   2.7e-18   66.1   0.0   1   2   2.8e-06    0.0083   15.4   0.0     5    75     5    73     2    99 0.81 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|Q7CK25|COF_YERPE  -            273   2.7e-18   66.1   0.0   2   2   1.6e-16   4.8e-13   48.9   0.0   116   219   142   238   120   261 0.88 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|Q7CK25|COF_YERPE  -            273   0.00016   22.1   0.0   1   2   9.6e-06     0.028   14.8   0.0     2    59     3    55     2   115 0.76 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|Q7CK25|COF_YERPE  -            273   0.00038   20.6   1.3   1   1   5.8e-06     0.017   15.2   1.3     1   191     5   220     5   221 0.58 haloacid dehalogenase-like hydrolase
Trehalose_PPase      PF02358.11   235 sp|Q7CK25|COF_YERPE  -            273     0.093   11.6   0.0   2   2   0.00011      0.33    9.8   0.0   155   205   178   225   150   240 0.86 Trehalose-phosphatase
Omptin               PF01278.15   295 sp|P17811|COLY_YERPE -            312  4.2e-146  485.6  14.5   1   1  3.4e-150    5e-146  485.4  14.5     4   295    26   312    21   312 0.99 Omptin family
Hydrolase            PF00702.21   215 sp|Q8ZCA7|COPA_YERPE -            961   2.7e-54  184.8   0.9   1   1     4e-57   7.4e-54  183.4   0.9     2   215   645   859   644   859 0.93 haloacid dehalogenase-like hydrolase
E1-E2_ATPase         PF00122.15   230 sp|Q8ZCA7|COPA_YERPE -            961     3e-53  180.2   0.8   1   1   1.6e-56     3e-53  180.2   0.8     1   229   418   639   418   640 0.98 E1-E2 ATPase
HMA                  PF00403.21    62 sp|Q8ZCA7|COPA_YERPE -            961   9.8e-36  121.7   2.9   1   3   4.7e-12   8.7e-09   35.4   0.1     3    62     8    62     6    62 0.95 Heavy-metal-associated domain
HMA                  PF00403.21    62 sp|Q8ZCA7|COPA_YERPE -            961   9.8e-36  121.7   2.9   2   3   3.1e-13   5.8e-10   39.1   0.1     3    62    74   128    72   128 0.95 Heavy-metal-associated domain
HMA                  PF00403.21    62 sp|Q8ZCA7|COPA_YERPE -            961   9.8e-36  121.7   2.9   3   3   2.1e-15   3.9e-12   46.1   0.0     5    61   233   286   229   287 0.96 Heavy-metal-associated domain
HAD                  PF12710.2    192 sp|Q8ZCA7|COPA_YERPE -            961     1e-18   68.2   0.0   1   1   2.2e-21     4e-18   66.2   0.0     2   191   648   855   647   856 0.66 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|Q8ZCA7|COPA_YERPE -            961   9.7e-08   31.8   1.5   2   2   8.6e-09   1.6e-05   24.6   1.2   195   252   832   889   826   891 0.88 haloacid dehalogenase-like hydrolase
PhdYeFM_antitox      PF02604.14    75 sp|Q8ZCA7|COPA_YERPE -            961     0.072   12.6   0.0   1   1   0.00011      0.21   11.1   0.0    18    44   751   776   746   792 0.87 Antitoxin Phd_YefM, type II toxin-antitoxin system
PepSY_TM_3           PF13706.1     37 sp|Q8ZCA7|COPA_YERPE -            961       8.4    5.8   8.6   1   1    0.0001      0.19   11.1   1.2    11    34   318   341   317   344 0.93 PepSY-associated TM helix
CorA                 PF01544.13   292 sp|Q8ZAG5|CORA_YERPE -            316   7.9e-53  179.3   0.3   1   1   1.9e-56   9.3e-53  179.1   0.3     3   292    25   312    23   312 0.90 CorA-like Mg2+ transporter protein
Utp13                PF08625.6    141 sp|Q8ZAG5|CORA_YERPE -            316     0.099   12.2   0.2   1   1   3.7e-05      0.18   11.4   0.2    81   131   193   245   131   250 0.86 Utp13 specific WD40 associated domain
PDEase_II            PF02112.10   335 sp|Q8ZD92|CPDP_YERPE -            343   7.1e-72  242.1   0.0   1   1     2e-75   9.8e-72  241.6   0.0     1   335    37   337    37   337 0.92 cAMP phosphodiesterases class-II
Lactamase_B_2        PF12706.2    194 sp|Q8ZD92|CPDP_YERPE -            343   2.8e-09   36.8   0.0   1   1   7.7e-13   3.8e-09   36.3   0.0    25   182   102   281    53   285 0.74 Beta-lactamase superfamily domain
Lactamase_B          PF00753.22   194 sp|Q8ZD92|CPDP_YERPE -            343    0.0019   17.8   0.0   1   1   1.2e-06    0.0059   16.2   0.0    48   158   113   234   108   270 0.73 Metallo-beta-lactamase superfamily
CRCB                 PF02537.10   117 sp|Q8ZDH2|CRCB1_YERPE -            127   1.5e-29  102.2  13.4   1   1   3.7e-33   1.8e-29  101.9  13.4     2   115     6   117     5   119 0.94 CrcB-like protein
CbtB                 PF09489.5     55 sp|Q8ZDH2|CRCB1_YERPE -            127      0.41   10.5   0.1   1   2   8.4e-05      0.41   10.5   0.1     4    37    29    62    26    65 0.83 Probable cobalt transporter subunit (CbtB)
CRCB                 PF02537.10   117 sp|Q8ZDB2|CRCB2_YERPE -            134   2.6e-26   91.7   7.9   1   1     8e-30     3e-26   91.6   7.9     1   116     5   118     5   119 0.94 CrcB-like protein
7TMR-DISM_7TM        PF07695.6    205 sp|Q8ZDB2|CRCB2_YERPE -            134     0.096   12.3   5.4   1   1   3.7e-05      0.14   11.8   5.4    70   144    36   113     4   118 0.73 7TM diverse intracellular signalling
Glycoprotein_B       PF00606.13   714 sp|Q8ZDB2|CRCB2_YERPE -            134      0.15   10.0   3.7   1   1   4.5e-05      0.17    9.9   3.7   641   689    67   115    41   121 0.92 Herpesvirus Glycoprotein B
DUF4282              PF14110.1     90 sp|Q8ZDB2|CRCB2_YERPE -            134       8.5    6.6  12.6   2   2   0.00015      0.56   10.4   4.5    18    72    63   116    61   121 0.88 Domain of unknown function (DUF4282)
CRCB                 PF02537.10   117 sp|Q8ZDB1|CRCB3_YERPE -            126   2.6e-26   91.8   9.7   1   1   1.9e-30   2.9e-26   91.6   9.7     1   116     6   122     6   123 0.96 CrcB-like protein
Crl                  PF07417.7    127 sp|Q7CK59|CRL_YERPE  -            133   2.4e-52  175.9   0.1   1   1   1.9e-56   2.8e-52  175.7   0.1     2   122     3   123     2   131 0.96 Transcriptional regulator Crl
CsrA                 PF02599.11    54 sp|P63876|CSRA_YERPE -             61   5.9e-28   96.3   1.7   1   1   8.9e-32   6.6e-28   96.2   1.7     1    54     1    54     1    54 0.99 Global regulator protein family
S1                   PF00575.18    74 sp|P63876|CSRA_YERPE -             61     0.034   14.2   0.4   2   2   7.1e-06     0.052   13.6   0.3     3    40    13    50    11    60 0.85 S1 RNA binding domain
Cu-oxidase_3         PF07732.10   118 sp|Q8ZBK0|CUEO_YERPE -            533   9.2e-32  109.2   0.2   1   1   6.3e-35   2.3e-31  107.9   0.2     6   117    56   167    51   168 0.91 Multicopper oxidase
Cu-oxidase_2         PF07731.9    138 sp|Q8ZBK0|CUEO_YERPE -            533   1.8e-23   82.5   1.2   2   2     5e-25   1.8e-21   76.0   0.5    16   134   415   531   394   533 0.77 Multicopper oxidase
Cu-oxidase           PF00394.17   159 sp|Q8ZBK0|CUEO_YERPE -            533     6e-10   39.2   0.0   1   2   4.7e-10   1.7e-06   27.9   0.0    59   126   221   290   171   295 0.82 Multicopper oxidase
TAT_signal           PF10518.4     26 sp|Q8ZBK0|CUEO_YERPE -            533   0.00021   21.0   0.7   1   1   2.3e-07   0.00084   19.1   0.7     2    23     1    22     1    25 0.90 TAT (twin-arginine translocation) pathway signal sequence
CutA1                PF03091.10   102 sp|Q74XD3|CUTA_YERPE -            119   3.2e-35  119.8   0.0   1   1   2.5e-39   3.7e-35  119.6   0.0     2   100    19   117    18   119 0.98 CutA1 divalent ion tolerance protein
CutC                 PF03932.9    202 sp|Q8ZEV5|CUTC_YERPE -            254   1.5e-73  246.3   0.7   1   1   3.9e-77   1.9e-73  246.0   0.7     2   200     3   201     2   203 0.97 CutC family
Response_reg         PF00072.19   112 sp|Q8ZEV5|CUTC_YERPE -            254     0.018   15.0   0.1   1   1   6.8e-06     0.034   14.1   0.1    28    95   126   195   101   197 0.85 Response regulator receiver domain
TMP-TENI             PF02581.12   180 sp|Q8ZEV5|CUTC_YERPE -            254     0.083   11.9   0.1   2   2   3.9e-05      0.19   10.8   0.0   127   172   147   195    69   199 0.73 Thiamine monophosphate synthase/TENI
Adenylate_cycl       PF01295.13   605 sp|P40127|CYAA_YERPE -            850  1.2e-278  925.4   0.0   1   1  1.9e-282  1.4e-278  925.2   0.0     1   602   228   827   228   830 0.98 Adenylate cyclase, class-I
Adenyl_cycl_N        PF12633.2    204 sp|P40127|CYAA_YERPE -            850   1.7e-86  288.9   0.0   1   2   1.3e-88   9.9e-85  283.1   0.0     1   203     1   200     1   201 0.96 Adenylate cyclase NT domain
Frataxin_Cyay        PF01491.11   109 sp|P46356|CYAY_YERPE -            106   1.1e-36  124.9   0.0   1   1   8.1e-41   1.2e-36  124.7   0.0     1   108     1   105     1   106 0.97 Frataxin-like domain
UbiA                 PF01040.13   257 sp|Q0WCB5|CYOE_YERPE -            296   2.9e-35  121.7  25.2   1   1   2.3e-39   3.4e-35  121.5  25.2     5   253    19   270    15   280 0.90 UbiA prenyltransferase family
ABC_tran             PF00005.22   137 sp|Q8D0W8|CYSA_YERPE -            363   4.7e-36  124.0   0.0   1   1   2.1e-38   7.2e-36  123.4   0.0     1   136    18   164    18   165 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|Q8D0W8|CYSA_YERPE -            363     1e-09   38.8   0.1   1   2   3.8e-06    0.0013   18.7   0.2     3    24    32    53    30    83 0.79 AAA domain
AAA_21               PF13304.1    303 sp|Q8D0W8|CYSA_YERPE -            363     1e-09   38.8   0.1   2   2   7.2e-06    0.0025   17.8   0.0   220   298   120   196    84   201 0.80 AAA domain
SMC_N                PF02463.14   220 sp|Q8D0W8|CYSA_YERPE -            363     2e-08   33.7   0.0   1   1     2e-10   7.1e-08   31.9   0.0    23   213    27   212     2   217 0.76 RecF/RecN/SMC N terminal domain
TOBE_3               PF12857.2     58 sp|Q8D0W8|CYSA_YERPE -            363   7.2e-08   32.1   0.1   1   1   6.6e-10   2.3e-07   30.5   0.1     2    40   287   326   286   332 0.93 TOBE-like domain
AAA_16               PF13191.1    185 sp|Q8D0W8|CYSA_YERPE -            363   2.3e-06   27.7   1.3   1   1   1.6e-08   5.8e-06   26.4   1.3    19   151    23   188    13   210 0.61 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q8D0W8|CYSA_YERPE -            363     6e-05   22.2   0.0   1   2    0.0016      0.55    9.2   0.1    17    49    20    55     2    66 0.67 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q8D0W8|CYSA_YERPE -            363     6e-05   22.2   0.0   2   2   0.00043      0.15   11.0   0.0   372   410   157   195   137   198 0.83 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q8D0W8|CYSA_YERPE -            363   0.00012   22.5   0.0   1   1   5.7e-07    0.0002   21.7   0.0     1    40     2    49     2    77 0.90 AAA domain
AAA_22               PF13401.1    131 sp|Q8D0W8|CYSA_YERPE -            363   0.00028   21.0   0.2   1   1   6.2e-06    0.0022   18.1   0.2     4   122    28   193    23   201 0.52 AAA domain
AAA_19               PF13245.1     76 sp|Q8D0W8|CYSA_YERPE -            363   0.00048   19.8   0.1   1   1     4e-06    0.0014   18.3   0.1    10    58    28    69    21    79 0.75 Part of AAA domain
NACHT                PF05729.7    166 sp|Q8D0W8|CYSA_YERPE -            363   0.00055   19.6   0.3   1   2   5.4e-05     0.019   14.6   0.0     2    21    30    49    29    61 0.87 NACHT domain
AAA_29               PF13555.1     62 sp|Q8D0W8|CYSA_YERPE -            363    0.0006   19.2   0.1   1   1   3.7e-06    0.0013   18.1   0.1    16    40    22    45    16    50 0.84 P-loop containing region of AAA domain
AAA                  PF00004.24   132 sp|Q8D0W8|CYSA_YERPE -            363   0.00089   19.4   0.0   1   2   0.00021     0.075   13.2   0.0     2    26    32    56    31    96 0.70 ATPase family associated with various cellular activities (AAA)
DUF258               PF03193.11   161 sp|Q8D0W8|CYSA_YERPE -            363   0.00091   18.4   0.0   1   1   4.5e-06    0.0016   17.6   0.0    30    67    22    60     3    75 0.82 Protein of unknown function, DUF258
SbcCD_C              PF13558.1     90 sp|Q8D0W8|CYSA_YERPE -            363    0.0025   17.6   0.1   1   1   5.1e-05     0.018   14.9   0.1    32    89   136   180   127   181 0.76 Putative exonuclease SbcCD, C subunit
AAA_25               PF13481.1    194 sp|Q8D0W8|CYSA_YERPE -            363    0.0034   16.8   0.0   1   2   0.00014      0.05   13.0   0.0    29    50    24    45     4    79 0.86 AAA domain
AAA_24               PF13479.1    213 sp|Q8D0W8|CYSA_YERPE -            363    0.0048   16.4   0.8   1   2   0.00066      0.23   10.9   0.1     3    21    28    46    26    50 0.88 AAA domain
AAA_14               PF13173.1    128 sp|Q8D0W8|CYSA_YERPE -            363    0.0052   16.6   0.0   1   2   0.00031      0.11   12.4   0.0     2    48    28    72    27   100 0.62 AAA domain
AAA_17               PF13207.1    121 sp|Q8D0W8|CYSA_YERPE -            363    0.0055   17.5   0.0   1   1   5.7e-05      0.02   15.6   0.0     2    21    31    50    30   121 0.72 AAA domain
UPF0079              PF02367.12   123 sp|Q8D0W8|CYSA_YERPE -            363    0.0085   15.7   0.0   1   1   4.5e-05     0.016   14.8   0.0    11    40    24    52    15    87 0.86 Uncharacterised P-loop hydrolase UPF0079
AAA_33               PF13671.1    143 sp|Q8D0W8|CYSA_YERPE -            363    0.0087   15.9   0.1   1   1   0.00013     0.045   13.6   0.0     1    19    30    48    30    95 0.89 AAA domain
AAA_28               PF13521.1    163 sp|Q8D0W8|CYSA_YERPE -            363     0.011   15.6   0.0   1   1   0.00011     0.038   13.9   0.0     2    23    31    57    30   121 0.60 AAA domain
NTPase_1             PF03266.10   168 sp|Q8D0W8|CYSA_YERPE -            363     0.013   15.1   0.1   1   1   0.00014      0.05   13.3   0.0     2    48    31    79    30    85 0.81 NTPase
Arch_ATPase          PF01637.13   234 sp|Q8D0W8|CYSA_YERPE -            363     0.016   14.8   0.0   1   1   0.00012     0.043   13.5   0.0     2    41    12    49    11    74 0.84 Archaeal ATPase
DLIC                 PF05783.6    472 sp|Q8D0W8|CYSA_YERPE -            363     0.017   13.8   0.0   1   1   6.7e-05     0.024   13.3   0.0    18    55    21    58    14    76 0.87 Dynein light intermediate chain (DLIC)
AAA_18               PF13238.1    129 sp|Q8D0W8|CYSA_YERPE -            363     0.017   15.3   0.0   1   1    0.0001     0.037   14.3   0.0     1    22    31    52    31    95 0.73 AAA domain
SRP54                PF00448.17   196 sp|Q8D0W8|CYSA_YERPE -            363     0.042   13.2   0.0   1   1   0.00035      0.12   11.7   0.0     3    45    30    72    28    76 0.91 SRP54-type protein, GTPase domain
MobB                 PF03205.9    140 sp|Q8D0W8|CYSA_YERPE -            363     0.043   13.5   0.0   1   1   0.00022     0.076   12.7   0.0     2    21    30    49    29    68 0.89 Molybdopterin guanine dinucleotide synthesis protein B
Miro                 PF08477.8    119 sp|Q8D0W8|CYSA_YERPE -            363     0.052   14.0   0.0   1   1   0.00028     0.099   13.1   0.0     2    38    31    66    30    75 0.86 Miro-like protein
AAA_5                PF07728.9    139 sp|Q8D0W8|CYSA_YERPE -            363     0.052   13.2   0.5   1   1   0.00053      0.19   11.4   0.1     2    26    31    55    30    63 0.86 AAA domain (dynein-related subfamily)
AAA_10               PF12846.2    304 sp|Q8D0W8|CYSA_YERPE -            363     0.058   12.8   0.1   1   1   0.00033      0.12   11.8   0.1     4    22    31    49    28    71 0.86 AAA-like domain
cobW                 PF02492.14   178 sp|Q8D0W8|CYSA_YERPE -            363     0.059   12.8   0.4   1   1    0.0003      0.11   11.9   0.1     3    23    31    52    29    60 0.77 CobW/HypB/UreG, nucleotide-binding domain
DEAD                 PF00270.24   169 sp|Q8D0W8|CYSA_YERPE -            363     0.065   12.7   0.0   1   1   0.00028       0.1   12.1   0.0    13   106    27   215    15   234 0.79 DEAD/DEAH box helicase
RecA                 PF00154.16   323 sp|Q8D0W8|CYSA_YERPE -            363     0.072   12.1   0.0   1   1   0.00034      0.12   11.4   0.0    50    81    25    55     6    71 0.82 recA bacterial DNA recombination protein
FtsK_SpoIIIE         PF01580.13   205 sp|Q8D0W8|CYSA_YERPE -            363     0.083   12.3   0.0   1   1   0.00046      0.16   11.3   0.0    28    60    18    48     8    72 0.75 FtsK/SpoIIIE family
AAA_30               PF13604.1    196 sp|Q8D0W8|CYSA_YERPE -            363     0.094   12.2   0.1   1   1   0.00062      0.22   11.0   0.0    17    45    28    55    21    66 0.78 AAA domain
NB-ARC               PF00931.17   287 sp|Q8D0W8|CYSA_YERPE -            363      0.11   11.3   0.0   1   1   0.00051      0.18   10.6   0.0    17    39    26    48    14    59 0.79 NB-ARC domain
T2SE                 PF00437.15   272 sp|Q8D0W8|CYSA_YERPE -            363      0.13   11.1   0.6   1   1    0.0011      0.38    9.6   0.0   127   152    27    52     7    61 0.78 Type II/IV secretion system protein
PduV-EutP            PF10662.4    143 sp|Q8D0W8|CYSA_YERPE -            363      0.15   11.5   0.0   1   1   0.00067      0.23   10.9   0.0     4    25    31    52    28    65 0.87 Ethanolamine utilisation - propanediol utilisation
APS_kinase           PF01583.15   157 sp|Q8ZBP3|CYSC_YERPE -            213   7.7e-73  243.3   0.0   1   1   1.3e-75     1e-72  242.9   0.0     1   153    39   191    39   194 0.98 Adenylylsulphate kinase
AAA_33               PF13671.1    143 sp|Q8ZBP3|CYSC_YERPE -            213   1.2e-08   34.9   0.0   1   1   2.2e-11   1.7e-08   34.4   0.0     1   115    42   155    42   179 0.83 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZBP3|CYSC_YERPE -            213   0.00013   22.7   0.0   1   1   2.7e-07   0.00021   22.1   0.0     3    46    44    96    42   171 0.65 AAA domain
AAA_10               PF12846.2    304 sp|Q8ZBP3|CYSC_YERPE -            213   0.00014   21.4   0.1   1   1   4.5e-07   0.00035   20.1   0.0     5    49    44    88    41    93 0.93 AAA-like domain
AAA_29               PF13555.1     62 sp|Q8ZBP3|CYSC_YERPE -            213   0.00028   20.3   0.7   1   1   5.5e-07   0.00043   19.7   0.0    22    51    39    68    27    73 0.81 P-loop containing region of AAA domain
AAA_18               PF13238.1    129 sp|Q8ZBP3|CYSC_YERPE -            213   0.00047   20.4   0.1   1   1   1.5e-06    0.0012   19.2   0.1     3    28    45    81    44   154 0.68 AAA domain
KTI12                PF08433.5    270 sp|Q8ZBP3|CYSC_YERPE -            213    0.0016   17.6   0.0   1   1   2.9e-06    0.0023   17.2   0.0     6    57    45    99    41   116 0.83 Chromatin associated protein KTI12
CbiA                 PF01656.18   195 sp|Q8ZBP3|CYSC_YERPE -            213     0.003   16.9   0.2   1   1   4.2e-06    0.0033   16.8   0.2     7    37    48    78    43   203 0.95 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_23               PF13476.1    202 sp|Q8ZBP3|CYSC_YERPE -            213    0.0062   16.8   0.0   1   1   1.1e-05    0.0088   16.3   0.0    24    46    45    67    38   118 0.82 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZBP3|CYSC_YERPE -            213     0.011   15.6   0.2   1   1   2.9e-05     0.022   14.7   0.1    19    55    35    79    26   131 0.73 AAA ATPase domain
IstB_IS21            PF01695.12   178 sp|Q8ZBP3|CYSC_YERPE -            213     0.017   14.5   0.2   1   1   5.9e-05     0.046   13.1   0.1    46    85    39    78    23   117 0.77 IstB-like ATP binding protein
SRP54                PF00448.17   196 sp|Q8ZBP3|CYSC_YERPE -            213     0.022   14.1   0.0   1   1   4.2e-05     0.033   13.6   0.0     3    43    42    82    40   102 0.91 SRP54-type protein, GTPase domain
ABC_tran             PF00005.22   137 sp|Q8ZBP3|CYSC_YERPE -            213     0.037   14.3   0.2   1   1   8.5e-05     0.066   13.5   0.1    10    34    39    63    34   111 0.81 ABC transporter
Torsin               PF06309.6    127 sp|Q8ZBP3|CYSC_YERPE -            213      0.04   13.8   0.0   1   1    0.0001     0.079   12.8   0.0    47    83    34    70    25    78 0.88 Torsin
Zeta_toxin           PF06414.7    201 sp|Q8ZBP3|CYSC_YERPE -            213     0.041   12.9   0.0   1   1   7.4e-05     0.058   12.4   0.0    16    82    40   108    25   143 0.79 Zeta toxin
ArgK                 PF03308.11   267 sp|Q8ZBP3|CYSC_YERPE -            213     0.041   12.6   0.0   1   1   7.9e-05     0.062   12.0   0.0    29    59    40    70    23    79 0.85 ArgK protein
MobB                 PF03205.9    140 sp|Q8ZBP3|CYSC_YERPE -            213     0.047   13.3   0.0   1   1   0.00012     0.092   12.4   0.0     2    32    42    72    41    82 0.87 Molybdopterin guanine dinucleotide synthesis protein B
ATP_bind_1           PF03029.12   238 sp|Q8ZBP3|CYSC_YERPE -            213      0.12   11.9   0.0   1   1   0.00024      0.19   11.2   0.0     2    29    46    73    45    79 0.89 Conserved hypothetical ATP binding protein
RNA_helicase         PF00910.17   107 sp|Q8ZBP3|CYSC_YERPE -            213      0.13   12.4   0.0   1   1   0.00032      0.25   11.5   0.0     1    23    43    65    43    79 0.88 RNA helicase
PAPS_reduct          PF01507.14   174 sp|Q8ZBP1|CYSD_YERPE -            302   1.5e-64  216.9   0.0   1   1   1.2e-68   1.8e-64  216.7   0.0     1   174    29   257    29   257 0.99 Phosphoadenosine phosphosulfate reductase family
TP_methylase         PF00590.15   210 sp|Q74Y23|CYSG_YERPE -            470   2.1e-49  168.0   0.4   1   1   1.2e-52   3.7e-49  167.2   0.1     2   210   215   424   214   424 0.92 Tetrapyrrole (Corrin/Porphyrin) Methylases
NAD_binding_7        PF13241.1    103 sp|Q74Y23|CYSG_YERPE -            470   9.1e-26   90.1   0.1   1   2   2.9e-27   8.6e-24   83.7   0.0     1   103     6   115     6   115 0.88 Putative NAD(P)-binding
CysG_dimeriser       PF10414.4     60 sp|Q74Y23|CYSG_YERPE -            470   7.6e-18   63.7   1.2   1   1   6.6e-21     2e-17   62.4   1.2     5    59   150   205   149   206 0.95 Sirohaem synthase dimerisation region
Sirohm_synth_M       PF14824.1     30 sp|Q74Y23|CYSG_YERPE -            470   4.6e-05   22.2   0.1   1   1   4.4e-08   0.00013   20.8   0.0     4    30   121   147   118   147 0.90 Sirohaem biosynthesis protein central
NIR_SIR              PF01077.17   157 sp|Q8ZBN7|CYSI_YERPE -            576   2.6e-50  169.8   0.0   1   2   2.9e-46   1.4e-42  144.6   0.0     2   155   173   329   172   331 0.98 Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR              PF01077.17   157 sp|Q8ZBN7|CYSI_YERPE -            576   2.6e-50  169.8   0.0   2   2   7.8e-09   3.9e-05   23.0   0.0     5   142   429   558   426   560 0.88 Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr         PF03460.12    69 sp|Q8ZBN7|CYSI_YERPE -            576   3.8e-31  106.5   0.1   1   2   6.2e-17     3e-13   49.1   0.0    10    68    80   139    72   140 0.90 Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR_ferr         PF03460.12    69 sp|Q8ZBN7|CYSI_YERPE -            576   3.8e-31  106.5   0.1   2   2   9.1e-19   4.5e-15   55.0   0.0     5    68   353   417   350   418 0.94 Nitrite/Sulfite reductase ferredoxin-like half domain
GcpE                 PF04551.9    359 sp|Q8ZBN7|CYSI_YERPE -            576      0.08   11.7   0.0   1   1   2.4e-05      0.12   11.1   0.0   260   341   427   514   418   534 0.74 GcpE protein
GTP_EFTU             PF00009.22   188 sp|Q8ZBP2|CYSN_YERPE -            478   1.5e-44  151.7   0.0   1   1   6.7e-48     2e-44  151.2   0.0     2   178    29   231    28   318 0.90 Elongation factor Tu GTP binding domain
MMR_HSR1             PF01926.18   116 sp|Q8ZBP2|CYSN_YERPE -            478   1.3e-07   31.5   0.0   1   1   1.5e-10   4.4e-07   29.8   0.0     5    97    36   154    32   172 0.77 50S ribosome-binding GTPase
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZBP2|CYSN_YERPE -            478   2.6e-05   24.2   0.2   1   1   1.7e-08     5e-05   23.3   0.2     6    73   268   327   264   328 0.87 Elongation factor Tu domain 2
Miro                 PF08477.8    119 sp|Q8ZBP2|CYSN_YERPE -            478   7.3e-05   23.2   0.0   1   1   1.3e-07   0.00039   20.9   0.0     1    86    32   146    32   174 0.85 Miro-like protein
SRPRB                PF09439.5    181 sp|Q8ZBP2|CYSN_YERPE -            478     0.015   14.5   0.1   1   1   0.00018      0.54    9.4   0.1    32    69    93   130    28   143 0.85 Signal recognition particle receptor beta subunit
DAO                  PF01266.19   358 sp|Q8ZEL7|DADA_YERPE -            434   1.1e-74  251.5   0.5   1   1   1.8e-77   1.2e-74  251.3   0.5     2   358     3   397     2   397 0.95 FAD dependent oxidoreductase
Pyr_redox            PF00070.22    80 sp|Q8ZEL7|DADA_YERPE -            434   2.7e-09   37.2   0.1   1   2   3.6e-09   2.5e-06   27.7   0.1     1    35     2    36     2    47 0.91 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|Q8ZEL7|DADA_YERPE -            434   2.2e-07   30.8   0.2   1   1   1.1e-09   7.4e-07   29.0   0.1     1    31     5    35     5    60 0.89 NAD(P)-binding Rossmann-like domain
Pyr_redox_2          PF07992.9    201 sp|Q8ZEL7|DADA_YERPE -            434   3.9e-07   30.1   0.4   1   2   6.4e-07   0.00046   20.1   0.2     1    33     2    34     2    52 0.86 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2        PF00890.19   417 sp|Q8ZEL7|DADA_YERPE -            434   4.7e-07   29.0   0.7   1   2   6.6e-05     0.046   12.5   0.3     2    32     3    33     2    48 0.85 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|Q8ZEL7|DADA_YERPE -            434   4.7e-07   29.0   0.7   2   2   1.4e-05    0.0098   14.7   0.0    87   203   148   257   123   274 0.70 FAD binding domain
ApbA                 PF02558.11   151 sp|Q8ZEL7|DADA_YERPE -            434   8.1e-06   25.3   0.1   1   1   3.3e-08   2.4e-05   23.8   0.1     1    35     3    38     3    48 0.91 Ketopantoate reductase PanE/ApbA
HI0933_like          PF03486.9    409 sp|Q8ZEL7|DADA_YERPE -            434     1e-05   24.2   0.1   1   2   0.00018      0.12   10.7   0.1     2    35     2    35     1    45 0.91 HI0933-like protein
HI0933_like          PF03486.9    409 sp|Q8ZEL7|DADA_YERPE -            434     1e-05   24.2   0.1   2   2   0.00013     0.089   11.2   0.0   114   170   206   261   196   300 0.79 HI0933-like protein
UDPG_MGDP_dh_N       PF03721.9    185 sp|Q8ZEL7|DADA_YERPE -            434   4.6e-05   22.8   0.1   1   1   1.7e-07   0.00012   21.5   0.1     1    35     1    35     1    52 0.86 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Thi4                 PF01946.12   230 sp|Q8ZEL7|DADA_YERPE -            434   6.3e-05   22.1   0.2   1   2   2.2e-05     0.016   14.3   0.1    20    49     3    32     1    45 0.91 Thi4 family
FAD_binding_3        PF01494.14   356 sp|Q8ZEL7|DADA_YERPE -            434   0.00031   19.9   0.2   1   1     8e-07   0.00056   19.0   0.2     3    43     2    42     1    48 0.91 FAD binding domain
GIDA                 PF01134.17   392 sp|Q8ZEL7|DADA_YERPE -            434   0.00044   19.2   0.1   1   2   0.00031      0.22   10.3   0.1     2    29     3    30     2    49 0.82 Glucose inhibited division protein A
Pyr_redox_3          PF13738.1    203 sp|Q8ZEL7|DADA_YERPE -            434   0.00051   20.1   0.1   1   2   3.3e-05     0.023   14.7   0.2     1    37     4    39     4    57 0.90 Pyridine nucleotide-disulphide oxidoreductase
Trp_halogenase       PF04820.9    454 sp|Q8ZEL7|DADA_YERPE -            434   0.00082   18.1   0.7   1   2   0.00036      0.25    9.9   0.1     1    35     2    33     2    43 0.91 Tryptophan halogenase
AlaDh_PNT_C          PF01262.16   168 sp|Q8ZEL7|DADA_YERPE -            434    0.0011   18.5   0.1   1   1   2.5e-06    0.0018   17.8   0.1    22    66     2    46     1    53 0.86 Alanine dehydrogenase/PNT, C-terminal domain
3HCDH_N              PF02737.13   180 sp|Q8ZEL7|DADA_YERPE -            434    0.0012   18.5   0.2   1   1   3.6e-06    0.0026   17.4   0.2     2    37     3    38     2    50 0.87 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Amino_oxidase        PF01593.19   450 sp|Q8ZEL7|DADA_YERPE -            434     0.012   14.7   0.0   2   2    0.0014      0.99    8.4   0.0   215   263   207   255   201   265 0.88 Flavin containing amine oxidoreductase
NAD_Gly3P_dh_N       PF01210.18   157 sp|Q8ZEL7|DADA_YERPE -            434     0.019   14.7   0.1   1   1     5e-05     0.036   13.8   0.1     2    35     3    36     2    51 0.87 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Saccharop_dh         PF03435.13   386 sp|Q8ZEL7|DADA_YERPE -            434     0.021   13.7   0.1   1   1   5.3e-05     0.037   13.0   0.1     1    41     3    41     3    49 0.89 Saccharopine dehydrogenase
TrkA_N               PF02254.13   116 sp|Q8ZEL7|DADA_YERPE -            434     0.037   14.0   0.1   1   1   0.00014       0.1   12.6   0.1     1    37     3    39     3    47 0.87 TrkA-N domain
NAD_binding_7        PF13241.1    103 sp|Q8ZEL7|DADA_YERPE -            434      0.11   12.7   0.0   1   1   0.00028       0.2   11.9   0.0     9    40     2    33     1   107 0.85 Putative NAD(P)-binding
Mannitol_dh_C        PF08125.8    245 sp|P58709|DALD_YERPE -            463   7.8e-71  238.0   0.0   1   1   1.4e-74     1e-70  237.7   0.0     3   241   202   440   200   444 0.97 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P58709|DALD_YERPE -            463   3.4e-36  124.4   0.0   1   1   6.8e-40   5.1e-36  123.8   0.0     3   151    12   171    10   171 0.97 Mannitol dehydrogenase Rossmann domain
DHDPS                PF00701.17   289 sp|Q8ZCD0|DAPA_YERPE -            293  2.2e-111  371.1   0.0   1   1  3.3e-115  2.4e-111  370.9   0.0     1   289     1   291     1   291 0.99 Dihydrodipicolinate synthetase family
YjgF_endoribonc      PF14588.1    148 sp|Q8ZCD0|DAPA_YERPE -            293      0.11   12.3   0.8   1   2   6.2e-05      0.46   10.4   0.7    62    90   148   176   145   229 0.86 YjgF/chorismate_mutase-like, putative endoribonuclease
DapB_C               PF05173.9    132 sp|Q8ZIL6|DAPB_YERPE -            273   1.4e-46  157.5   0.4   1   1   6.1e-50   2.3e-46  156.8   0.4     1   132   132   268   132   268 0.98 Dihydrodipicolinate reductase, C-terminus
DapB_N               PF01113.15   124 sp|Q8ZIL6|DAPB_YERPE -            273   1.3e-42  144.6   1.4   1   2   5.9e-46   2.2e-42  143.8   0.7     1   124     6   129     6   129 0.99 Dihydrodipicolinate reductase, N-terminus
NAD_binding_10       PF13460.1    183 sp|Q8ZIL6|DAPB_YERPE -            273     0.072   13.0   2.5   1   1   3.2e-05      0.12   12.4   1.8     1   103     8   108     8   128 0.74 NADH(P)-binding
Semialdhyde_dh       PF01118.19   121 sp|Q8ZIL6|DAPB_YERPE -            273      0.28   11.5   2.1   1   2   0.00011      0.41   10.9   0.5     1    83     7    89     7   105 0.59 Semialdehyde dehydrogenase, NAD binding domain
THDPS_N_2            PF14805.1     70 sp|Q8ZH69|DAPD_YERPE -            274   1.7e-28   98.2   0.7   1   1   5.3e-32   2.6e-28   97.6   0.7     1    70     2    70     2    70 0.98 Tetrahydrodipicolinate N-succinyltransferase N-terminal
Hexapep              PF00132.19    36 sp|Q8ZH69|DAPD_YERPE -            274   9.6e-14   50.1  10.1   2   3   4.1e-08    0.0002   20.7   3.2     2    36   132   166   128   166 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8ZH69|DAPD_YERPE -            274   9.6e-14   50.1  10.1   3   3     1e-10   5.2e-07   28.8   1.0     2    35   176   209   175   210 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|Q8ZH69|DAPD_YERPE -            274   1.9e-11   43.3   8.6   2   2   4.3e-15   2.1e-11   43.1   1.1     1    33   175   209   175   210 0.93 Hexapeptide repeat of succinyl-transferase
Peptidase_M20        PF01546.23   189 sp|Q7CJI9|DAPE_YERPE -            375     5e-44  150.0   0.2   1   1   1.6e-47     6e-44  149.8   0.2     1   188    62   371    62   372 0.96 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|Q7CJI9|DAPE_YERPE -            375   1.5e-23   82.6   0.1   1   1   1.1e-26     4e-23   81.3   0.0     1   111   175   282   175   283 0.97 Peptidase dimerisation domain
Peptidase_M18        PF02127.10   432 sp|Q7CJI9|DAPE_YERPE -            375     0.025   13.0   0.0   1   1   9.4e-06     0.035   12.6   0.0   383   430   321   368   302   370 0.92 Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M28        PF04389.12   179 sp|Q7CJI9|DAPE_YERPE -            375     0.037   13.7   0.1   1   1   2.6e-05     0.098   12.3   0.1     2    62    60   136    59   162 0.76 Peptidase family M28
DAP_epimerase        PF01678.14   121 sp|P46357|DAPF_YERPE -            274   5.6e-73  242.5   1.5   1   2   9.1e-42   1.3e-37  128.3   0.0     1   120     3   123     3   124 0.98 Diaminopimelate epimerase
DAP_epimerase        PF01678.14   121 sp|P46357|DAPF_YERPE -            274   5.6e-73  242.5   1.5   2   2   3.2e-37   4.7e-33  113.6   0.4     2   121   152   267   151   267 0.97 Diaminopimelate epimerase
DCD                  PF06559.6    366 sp|Q8ZFZ8|DCD_YERPE  -            193   2.8e-11   42.4   0.0   1   2   2.6e-11   1.9e-07   29.8   0.0    12   126     3   124     2   129 0.88 2'-deoxycytidine 5'-triphosphate deaminase (DCD)
DCD                  PF06559.6    366 sp|Q8ZFZ8|DCD_YERPE  -            193   2.8e-11   42.4   0.0   2   2   1.4e-05       0.1   10.9   0.0   306   357   131   183   125   190 0.88 2'-deoxycytidine 5'-triphosphate deaminase (DCD)
dUTPase              PF00692.14   129 sp|Q8ZFZ8|DCD_YERPE  -            193     3e-10   39.6   0.0   1   1   6.6e-14   4.9e-10   38.9   0.0    23   126    80   186    73   189 0.93 dUTPase
SDF                  PF00375.13   390 sp|Q8ZA28|DCTA_YERPE -            429  2.7e-114  381.9  38.2   1   1  4.2e-118  3.1e-114  381.7  38.2     1   390     9   401     9   401 0.97 Sodium:dicarboxylate symporter family
TMEMspv1-c74-12      PF11044.3     49 sp|Q8ZA28|DCTA_YERPE -            429     0.098   12.2   0.5   1   1     4e-05       0.3   10.6   0.5     4    33   227   257   224   259 0.87 Plectrovirus spv1-c74 ORF 12 transmembrane protein
URO-D                PF01208.12   343 sp|Q8ZAQ7|DCUP_YERPE -            355  1.2e-139  465.0   0.0   1   1  9.3e-144  1.4e-139  464.8   0.0     2   342     5   347     4   348 0.98 Uroporphyrinogen decarboxylase (URO-D)
PALP                 PF00291.20   306 sp|Q8ZF73|DCYD_YERPE -            330   9.8e-41  139.9   0.5   1   1   7.4e-45   1.1e-40  139.7   0.5     6   306    18   318    13   318 0.82 Pyridoxal-phosphate dependent enzyme
Dala_Dala_lig_C      PF07478.8    203 sp|Q8ZIE7|DDL_YERPE  -            306     2e-67  226.5   0.0   1   1   1.6e-70   2.6e-67  226.1   0.0     1   202   103   302   103   303 0.97 D-ala D-ala ligase C-terminus
Dala_Dala_lig_N      PF01820.16   117 sp|Q8ZIE7|DDL_YERPE  -            306   3.2e-23   82.2   1.2   1   1   1.5e-22   2.4e-19   69.7   1.2     2   117     4    86     3    86 0.87 D-ala D-ala ligase N-terminus
ATP-grasp_4          PF13535.1    184 sp|Q8ZIE7|DDL_YERPE  -            306   7.4e-18   64.9   0.0   1   1   7.7e-21   1.3e-17   64.1   0.0     2   176    94   272    93   276 0.79 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|Q8ZIE7|DDL_YERPE  -            306   5.1e-11   42.2   0.0   1   1   5.2e-14   8.6e-11   41.5   0.0    25   178   125   273    96   301 0.86 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATPgrasp_Ter         PF15632.1    330 sp|Q8ZIE7|DDL_YERPE  -            306   1.9e-07   30.1   0.0   1   1   2.7e-09   4.4e-06   25.6   0.0   102   279    91   273    83   283 0.75 ATP-grasp in the biosynthetic pathway with Ter operon
RimK                 PF08443.6    190 sp|Q8ZIE7|DDL_YERPE  -            306   0.00036   20.0   0.0   1   1   8.7e-07    0.0014   18.1   0.0    25   174   125   280   100   285 0.75 RimK-like ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|Q8ZIE7|DDL_YERPE  -            306    0.0011   18.3   0.0   1   1   1.7e-06    0.0028   17.0   0.0     2    73   105   184   104   278 0.70 ATP-grasp domain
TTL                  PF03133.10   294 sp|Q8ZIE7|DDL_YERPE  -            306    0.0037   16.2   0.0   2   2     3e-05      0.05   12.5   0.0   241   267   255   281   230   292 0.85 Tubulin-tyrosine ligase family
GARS_A               PF01071.14   194 sp|Q8ZIE7|DDL_YERPE  -            306     0.075   12.5   0.0   1   1   5.5e-05      0.09   12.3   0.0    24   102   123   196    96   299 0.78 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
Pep_deformylase      PF01327.16   157 sp|Q8ZJ79|DEF_YERPE  -            170   7.4e-52  174.9   0.1   1   1   1.2e-55   9.1e-52  174.6   0.1     2   156     4   152     3   153 0.94 Polypeptide deformylase
Metalloenzyme        PF01676.13   252 sp|Q8ZIQ3|DEOB_YERPE -            407   1.2e-59  201.7   0.0   1   1   2.7e-63   1.3e-59  201.5   0.0     1   251     2   405     2   406 0.97 Metalloenzyme superfamily
Phosphodiest         PF01663.17   365 sp|Q8ZIQ3|DEOB_YERPE -            407   0.00043   19.7   0.0   1   1   1.2e-07   0.00058   19.2   0.0   164   248   275   353   220   389 0.84 Type I phosphodiesterase / nucleotide pyrophosphatase
Bac_DNA_binding      PF00216.16    90 sp|Q8ZIQ3|DEOB_YERPE -            407      0.15   12.1   0.0   1   1   5.8e-05      0.28   11.2   0.0     7    54   260   309   259   316 0.86 Bacterial DNA-binding protein
DeoC                 PF01791.4    236 sp|Q8ZGH4|DEOC1_YERPE -            223   2.8e-55  187.1   8.4   1   1   6.5e-59   3.2e-55  187.0   8.4     2   235     5   214     4   215 0.97 DeoC/LacD family aldolase
DAP10                PF07213.6     79 sp|Q8ZGH4|DEOC1_YERPE -            223    0.0049   16.5   0.7   1   1   2.3e-06     0.011   15.4   0.7    13    45    45    77    42    85 0.92 DAP10 membrane protein
TroA                 PF01297.12   256 sp|Q8ZGH4|DEOC1_YERPE -            223     0.083   12.1   0.1   1   2   0.00012      0.59    9.3   0.0   182   231    17    67     7    95 0.81 Periplasmic solute binding protein family
DeoC                 PF01791.4    236 sp|Q8ZIQ4|DEOC2_YERPE -            265   1.8e-54  184.5   0.6   1   1   4.3e-58   2.1e-54  184.3   0.6     3   226    18   230    16   251 0.93 DeoC/LacD family aldolase
GRAS                 PF03514.9    374 sp|Q8ZIQ4|DEOC2_YERPE -            265      0.14   10.8   0.0   1   1   4.5e-05      0.22   10.1   0.0   133   197    65   131    62   164 0.77 GRAS domain family
PNP_UDP_1            PF01048.15   234 sp|Q8ZIQ2|DEOD_YERPE -            239   6.3e-44  149.7   1.9   1   1   9.7e-48   7.2e-44  149.4   1.9     2   213    16   217    15   234 0.90 Phosphorylase superfamily
Lipase_2             PF01674.13   219 sp|Q8ZIQ2|DEOD_YERPE -            239     0.037   13.3   0.0   1   1   1.1e-05      0.08   12.2   0.0    53    87    33    68    20    75 0.86 Lipase (class 2)
MMR_HSR1             PF01926.18   116 sp|Q8ZCT9|DER_YERPE  -            495   9.3e-52  173.8   0.2   1   2   6.4e-28     3e-25   88.4   0.0     2   116     5   119     4   119 0.93 50S ribosome-binding GTPase
MMR_HSR1             PF01926.18   116 sp|Q8ZCT9|DER_YERPE  -            495   9.3e-52  173.8   0.2   2   2   2.5e-26   1.2e-23   83.3   0.2     2   116   210   327   209   327 0.87 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|Q8ZCT9|DER_YERPE  -            495   5.4e-31  106.9   0.0   1   2   5.1e-19   2.4e-16   59.4   0.0     3   154     5   156     3   158 0.84 Ferrous iron transport protein B
FeoB_N               PF02421.13   156 sp|Q8ZCT9|DER_YERPE  -            495   5.4e-31  106.9   0.0   2   2   8.4e-15   3.9e-12   45.7   0.0     2   154   209   371   208   373 0.81 Ferrous iron transport protein B
KH_dom-like          PF14714.1     80 sp|Q8ZCT9|DER_YERPE  -            495     6e-27   93.4   0.0   1   1   2.4e-29   1.1e-26   92.5   0.0     1    80   383   463   383   463 0.98 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
GTP_EFTU             PF00009.22   188 sp|Q8ZCT9|DER_YERPE  -            495   5.6e-20   71.5   1.2   1   2   5.9e-06    0.0027   17.1   0.1    53   138    35   126     1   161 0.70 Elongation factor Tu GTP binding domain
GTP_EFTU             PF00009.22   188 sp|Q8ZCT9|DER_YERPE  -            495   5.6e-20   71.5   1.2   2   2   9.5e-14   4.4e-11   42.5   0.1     5   184   209   375   206   378 0.81 Elongation factor Tu GTP binding domain
Miro                 PF08477.8    119 sp|Q8ZCT9|DER_YERPE  -            495   1.9e-14   54.2   0.0   1   2   1.4e-07   6.6e-05   23.3   0.0     2   119     5   121     4   121 0.81 Miro-like protein
Miro                 PF08477.8    119 sp|Q8ZCT9|DER_YERPE  -            495   1.9e-14   54.2   0.0   2   2   4.7e-09   2.2e-06   28.1   0.0     1    95   209   311   209   329 0.77 Miro-like protein
Dynamin_N            PF00350.18   168 sp|Q8ZCT9|DER_YERPE  -            495   2.1e-11   43.9   0.1   2   4   0.00024      0.11   12.2   0.0   103   167    52   119    31   120 0.82 Dynamin family
Dynamin_N            PF00350.18   168 sp|Q8ZCT9|DER_YERPE  -            495   2.1e-11   43.9   0.1   3   4   0.00012     0.054   13.3   0.0     1    42   210   252   210   257 0.77 Dynamin family
AIG1                 PF04548.11   212 sp|Q8ZCT9|DER_YERPE  -            495     8e-10   38.1   0.1   1   2    0.0001     0.046   12.8   0.0     3   107     5   106     4   110 0.77 AIG1 family
AIG1                 PF04548.11   212 sp|Q8ZCT9|DER_YERPE  -            495     8e-10   38.1   0.1   2   2   1.1e-07   5.1e-05   22.4   0.1     3   104   210   311   208   317 0.86 AIG1 family
DUF258               PF03193.11   161 sp|Q8ZCT9|DER_YERPE  -            495   8.1e-07   28.3   0.1   1   2   0.00015     0.069   12.3   0.0    38    76     5    43     3    75 0.71 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|Q8ZCT9|DER_YERPE  -            495   8.1e-07   28.3   0.1   2   2   8.2e-05     0.038   13.1   0.0    39   101   211   269   204   290 0.76 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|Q8ZCT9|DER_YERPE  -            495   7.7e-06   26.7   0.0   1   2    0.0013       0.6   10.9   0.0     1    19     4    22     4   112 0.76 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZCT9|DER_YERPE  -            495   7.7e-06   26.7   0.0   2   2   0.00021     0.099   13.4   0.0     2    57   210   265   209   341 0.73 AAA domain
Ras                  PF00071.17   162 sp|Q8ZCT9|DER_YERPE  -            495   4.1e-05   23.0   0.0   1   2   0.00092      0.42    9.9   0.0     2   118     5   124     4   166 0.68 Ras family
Ras                  PF00071.17   162 sp|Q8ZCT9|DER_YERPE  -            495   4.1e-05   23.0   0.0   2   2   0.00063      0.29   10.5   0.0     1    64   209   271   209   376 0.78 Ras family
AAA_22               PF13401.1    131 sp|Q8ZCT9|DER_YERPE  -            495     7e-05   22.9   0.0   2   2   0.00093      0.43   10.7   0.0     7   105   210   308   209   327 0.57 AAA domain
SRPRB                PF09439.5    181 sp|Q8ZCT9|DER_YERPE  -            495   7.3e-05   22.0   0.0   1   2   0.00052      0.24   10.5   0.0     4    85     3    91     1    96 0.60 Signal recognition particle receptor beta subunit
SRPRB                PF09439.5    181 sp|Q8ZCT9|DER_YERPE  -            495   7.3e-05   22.0   0.0   2   2    0.0019      0.89    8.7   0.0     7   141   211   347   207   365 0.70 Signal recognition particle receptor beta subunit
AAA_18               PF13238.1    129 sp|Q8ZCT9|DER_YERPE  -            495   9.1e-05   22.7   0.0   1   2    0.0017      0.77   10.0   0.0     1    19     5    23     5    62 0.86 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZCT9|DER_YERPE  -            495   9.1e-05   22.7   0.0   2   2    0.0014      0.66   10.2   0.0     2    21   211   230   210   310 0.72 AAA domain
MobB                 PF03205.9    140 sp|Q8ZCT9|DER_YERPE  -            495   0.00016   21.4   0.0   1   2    0.0014      0.66    9.6   0.0     1    20     3    22     3    28 0.91 Molybdopterin guanine dinucleotide synthesis protein B
ABC_tran             PF00005.22   137 sp|Q8ZCT9|DER_YERPE  -            495   0.00028   21.1   0.0   2   2    0.0015      0.71   10.1   0.0    13    36   209   232   208   310 0.87 ABC transporter
DUF2710              PF10921.3    109 sp|Q8ZCT9|DER_YERPE  -            495     0.028   14.5   0.1   1   1   0.00037      0.17   12.0   0.0    43    80   130   166   114   190 0.82 Protein of unknown function (DUF2710)
HD_assoc             PF13286.1     92 sp|Q8ZBM5|DGTP_YERPE -            506   3.2e-13   49.7   1.6   1   2   5.6e-08   0.00041   20.5   0.0     7    56   376   423   370   438 0.78 Phosphohydrolase-associated domain
HD_assoc             PF13286.1     92 sp|Q8ZBM5|DGTP_YERPE -            506   3.2e-13   49.7   1.6   2   2   5.8e-10   4.3e-06   26.9   0.7    52    92   464   501   442   501 0.76 Phosphohydrolase-associated domain
HD                   PF01966.17   122 sp|Q8ZBM5|DGTP_YERPE -            506   1.1e-10   41.5   0.0   1   1   3.7e-14   2.7e-10   40.2   0.0     1    51    66   133    66   146 0.92 HD domain
SIS_2                PF13580.1    138 sp|Q8ZB74|DIAA_YERPE -            196   1.1e-30  106.1   1.1   1   1   2.7e-34   1.4e-30  105.8   1.1     3   138    10   144     8   144 0.95 SIS domain
SIS                  PF01380.17   131 sp|Q8ZB74|DIAA_YERPE -            196   4.3e-07   29.5   0.1   2   2   6.7e-10   3.3e-06   26.7   0.0    47    98   103   154    76   182 0.84 SIS domain
HobA                 PF12163.3    180 sp|Q8ZB74|DIAA_YERPE -            196      0.15   11.3   0.0   1   1   4.4e-05      0.22   10.8   0.0    34    91    32    90    26   101 0.78 DNA replication regulator
Aldo_ket_red         PF00248.16   283 sp|Q8ZI40|DKGA_YERPE -            277   1.6e-55  187.9   0.1   1   1   1.4e-59   2.1e-55  187.5   0.1     2   281    18   260    17   261 0.96 Aldo/keto reductase family
Aldo_ket_red         PF00248.16   283 sp|Q8ZH36|DKGB_YERPE -            267   1.8e-51  174.6   0.2   1   1   1.5e-55   2.2e-51  174.3   0.2     3   282     7   251     5   252 0.95 Aldo/keto reductase family
DLH                  PF01738.13   218 sp|Q8ZAL4|DLHH_YERPE -            267   1.3e-73  246.9   0.1   1   1   1.3e-76   1.5e-73  246.7   0.1     2   217    33   255    32   256 0.97 Dienelactone hydrolase family
Abhydrolase_5        PF12695.2    145 sp|Q8ZAL4|DLHH_YERPE -            267   1.3e-17   63.9   0.6   1   1   1.5e-20   1.7e-17   63.5   0.1     2   145    49   227    48   227 0.79 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|Q8ZAL4|DLHH_YERPE -            267   9.3e-13   48.5   0.2   1   2   3.6e-08   4.1e-05   23.5   0.0    10    94    58   157    49   162 0.71 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|Q8ZAL4|DLHH_YERPE -            267   9.3e-13   48.5   0.2   2   2   4.6e-08   5.3e-05   23.2   0.0   175   221   182   232   167   239 0.83 Alpha/beta hydrolase family
BAAT_C               PF08840.6    213 sp|Q8ZAL4|DLHH_YERPE -            267   3.2e-10   40.0   0.8   1   2   0.00011      0.13   11.9   0.0    12    55   120   162   115   177 0.83 BAAT / Acyl-CoA thioester hydrolase C terminal
BAAT_C               PF08840.6    213 sp|Q8ZAL4|DLHH_YERPE -            267   3.2e-10   40.0   0.8   2   2   4.2e-08   4.8e-05   23.1   0.6   116   176   184   241   172   258 0.87 BAAT / Acyl-CoA thioester hydrolase C terminal
Peptidase_S9         PF00326.16   213 sp|Q8ZAL4|DLHH_YERPE -            267   3.5e-07   29.6   0.0   2   2   9.7e-08   0.00011   21.4   0.0   145   208   184   254   171   256 0.77 Prolyl oligopeptidase family
Chlorophyllase2      PF12740.2    260 sp|Q8ZAL4|DLHH_YERPE -            267   9.3e-06   24.7   0.1   1   1   2.3e-08   2.7e-05   23.2   0.0     7   116    35   154    31   165 0.72 Chlorophyllase enzyme
Abhydrolase_1        PF00561.15   230 sp|Q8ZAL4|DLHH_YERPE -            267   2.2e-05   24.1   0.0   1   1     5e-08   5.7e-05   22.7   0.0    35    72   119   156   103   169 0.83 alpha/beta hydrolase fold
Chlorophyllase       PF07224.6    307 sp|Q8ZAL4|DLHH_YERPE -            267   8.7e-05   21.4   0.0   1   1   1.1e-07   0.00012   20.9   0.0    34   138    33   147     8   158 0.72 Chlorophyllase
Abhydrolase_2        PF02230.11   216 sp|Q8ZAL4|DLHH_YERPE -            267   0.00047   19.6   0.0   1   1   6.8e-07   0.00078   18.9   0.0   101   200   119   228    84   232 0.71 Phospholipase/Carboxylesterase
Peptidase_S15        PF02129.13   272 sp|Q8ZAL4|DLHH_YERPE -            267    0.0014   18.0   0.2   2   2     7e-06     0.008   15.6   0.1    84   133   112   160   102   174 0.89 X-Pro dipeptidyl-peptidase (S15 family)
AXE1                 PF05448.7    320 sp|Q8ZAL4|DLHH_YERPE -            267    0.0093   14.4   0.0   1   1   1.4e-05     0.016   13.7   0.0    58   206    22   160     3   166 0.82 Acetyl xylan esterase (AXE1)
Abhydrolase_3        PF07859.8    211 sp|Q8ZAL4|DLHH_YERPE -            267     0.016   14.7   0.4   2   2   0.00081      0.93    9.0   0.0   183   209   202   228   169   230 0.76 alpha/beta hydrolase fold
DUF2048              PF09752.4    348 sp|Q8ZAL4|DLHH_YERPE -            267     0.022   13.6   0.0   1   1   4.5e-05     0.051   12.4   0.0   160   203   112   157    96   163 0.82 Uncharacterized conserved protein (DUF2048)
Bac_DnaA             PF00308.13   219 sp|Q8Z9U7|DNAA_YERPE -            462  3.4e-100  334.2   0.2   1   1  5.4e-103    5e-100  333.6   0.2     2   218   128   344   127   345 0.99 Bacterial dnaA  protein
Bac_DnaA_C           PF08299.6     70 sp|Q8Z9U7|DNAA_YERPE -            462   3.8e-35  119.5   0.1   1   1   1.1e-37     1e-34  118.1   0.1     1    70   370   439   370   439 0.99 Bacterial dnaA protein helix-turn-helix
DnaA_N               PF11638.3     65 sp|Q8Z9U7|DNAA_YERPE -            462   1.8e-20   72.2   0.2   1   1   5.6e-23   5.2e-20   70.7   0.2     2    64     4    64     3    65 0.92 DnaA N-terminal domain
IstB_IS21            PF01695.12   178 sp|Q8Z9U7|DNAA_YERPE -            462   1.9e-13   50.2   0.0   1   1   3.6e-16   3.4e-13   49.4   0.0    50   151   163   267   143   275 0.89 IstB-like ATP binding protein
AAA                  PF00004.24   132 sp|Q8Z9U7|DNAA_YERPE -            462   1.3e-06   28.6   0.0   1   1   7.8e-09   7.2e-06   26.2   0.0     2   111   164   265   163   285 0.76 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|Q8Z9U7|DNAA_YERPE -            462   7.3e-05   22.6   0.3   1   2   3.3e-06    0.0031   17.4   0.0     3   108   161   275   159   287 0.71 AAA domain
Kinesin              PF00225.18   335 sp|Q8Z9U7|DNAA_YERPE -            462   0.00017   20.4   0.0   1   1   4.3e-07    0.0004   19.1   0.0    37   147   125   393    92   424 0.75 Kinesin motor domain
Arch_ATPase          PF01637.13   234 sp|Q8Z9U7|DNAA_YERPE -            462   0.00038   20.2   0.8   1   2   2.1e-06     0.002   17.9   0.2    18   123   158   262   154   276 0.58 Archaeal ATPase
AAA_16               PF13191.1    185 sp|Q8Z9U7|DNAA_YERPE -            462    0.0016   18.4   1.3   1   2   2.4e-05     0.022   14.7   0.7    17   162   153   377   138   417 0.56 AAA ATPase domain
AAA_19               PF13245.1     76 sp|Q8Z9U7|DNAA_YERPE -            462     0.016   14.9   0.1   1   1    0.0001     0.095   12.4   0.0    10    62   161   209   148   227 0.82 Part of AAA domain
NACHT                PF05729.7    166 sp|Q8Z9U7|DNAA_YERPE -            462      0.02   14.5   0.0   1   1     5e-05     0.046   13.3   0.0     2    63   162   233   161   270 0.69 NACHT domain
AFG1_ATPase          PF03969.11   362 sp|Q8Z9U7|DNAA_YERPE -            462     0.029   13.1   0.5   1   1   8.2e-05     0.076   11.8   0.5    62   137   160   233   124   281 0.62 AFG1-like ATPase
RuvB_N               PF05496.7    234 sp|Q8Z9U7|DNAA_YERPE -            462      0.03   13.3   0.0   1   2   0.00038      0.36    9.8   0.0    16   121   125   228   113   236 0.72 Holliday junction DNA helicase ruvB N-terminus
PhoH                 PF02562.11   205 sp|Q8Z9U7|DNAA_YERPE -            462     0.096   11.9   0.1   1   1   0.00024      0.22   10.7   0.0    20    89   161   230   143   250 0.84 PhoH-like protein
RNA_helicase         PF00910.17   107 sp|Q8Z9U7|DNAA_YERPE -            462      0.11   12.7   0.0   1   1   0.00039      0.36   11.0   0.0     1    73   163   249   163   264 0.70 RNA helicase
CTDII                PF01556.13    81 sp|Q8ZIM6|DNAJ_YERPE -            379   2.4e-35  120.2   0.1   1   3   0.00022      0.46   10.4   0.0     1    40   119   158   119   179 0.78 DnaJ C terminal domain
CTDII                PF01556.13    81 sp|Q8ZIM6|DNAJ_YERPE -            379   2.4e-35  120.2   0.1   2   3     6e-10   1.3e-06   28.2   0.0    27    69   213   254   209   262 0.88 DnaJ C terminal domain
CTDII                PF01556.13    81 sp|Q8ZIM6|DNAJ_YERPE -            379   2.4e-35  120.2   0.1   3   3   1.6e-25   3.4e-22   78.1   0.0     1    81   265   343   265   343 0.95 DnaJ C terminal domain
DnaJ                 PF00226.26    64 sp|Q8ZIM6|DNAJ_YERPE -            379   4.6e-25   87.1   5.1   1   1   3.5e-28   7.5e-25   86.4   5.1     1    64     5    67     5    67 0.98 DnaJ domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|Q8ZIM6|DNAJ_YERPE -            379   1.2e-15   57.2  15.5   1   1   9.8e-19   2.1e-15   56.5  15.5     1    66   147   207   147   207 0.97 DnaJ central domain
Cytochrome_C7        PF14522.1     65 sp|Q8ZIM6|DNAJ_YERPE -            379     0.012   15.1  14.0   1   1   0.00037      0.79    9.3  13.7    12    64   161   204   136   205 0.61 Cytochrome c7
HSP70                PF00012.15   602 sp|Q8ZIM7|DNAK_YERPE -            636  1.2e-265  882.1  16.0   1   1  5.8e-269  1.4e-265  881.8  16.0     1   601     4   603     4   604 0.99 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|Q8ZIM7|DNAK_YERPE -            636   1.7e-15   56.4   2.1   2   2     2e-16   4.9e-13   48.3   0.5    73   316   115   376   106   381 0.79 MreB/Mbl protein
FGGY_C               PF02782.11   198 sp|Q8ZIM7|DNAK_YERPE -            636    0.0018   17.9   0.0   1   1   1.6e-06    0.0039   16.8   0.0   145   196   311   381   299   383 0.75 FGGY family of carbohydrate kinases, C-terminal domain
Hydantoinase_A       PF01968.13   290 sp|Q8ZIM7|DNAK_YERPE -            636     0.022   13.8   0.1   1   2   8.8e-06     0.022   13.8   0.1    59   107   169   218   154   239 0.82 Hydantoinase/oxoprolinase
ARGLU                PF15346.1    149 sp|Q8ZIM7|DNAK_YERPE -            636       3.9    7.2  15.2   1   1    0.0003      0.75    9.5  11.1    54   130   513   588   497   605 0.80 Arginine and glutamate-rich 1
DNA_ligase_aden      PF01653.13   315 sp|Q7CJF3|DNLJ_YERPE -            670  2.5e-130  434.0   0.0   1   1  2.8e-133  3.8e-130  433.4   0.0     3   315     4   318     2   318 0.98 NAD-dependent DNA ligase adenylation domain
DNA_ligase_OB        PF03120.11    82 sp|Q7CJF3|DNLJ_YERPE -            670   3.5e-35  119.4   3.9   1   1   6.5e-38   8.8e-35  118.2   3.9     1    81   320   400   320   401 0.98 NAD-dependent DNA ligase OB-fold domain
HHH_2                PF12826.2     64 sp|Q7CJF3|DNLJ_YERPE -            670   5.1e-26   90.3   0.3   2   2   5.6e-27   7.5e-24   83.3   0.1     1    64   510   573   510   573 0.99 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|Q7CJF3|DNLJ_YERPE -            670   4.8e-19   68.2   0.2   1   2   1.4e-11   1.9e-08   34.3   0.0     3    60   444   502   442   502 0.94 Helix-hairpin-helix domain
HHH_5                PF14520.1     60 sp|Q7CJF3|DNLJ_YERPE -            670   4.8e-19   68.2   0.2   2   2   1.3e-10   1.7e-07   31.2   0.0     2    58   509   564   508   566 0.92 Helix-hairpin-helix domain
BRCT                 PF00533.21    78 sp|Q7CJF3|DNLJ_YERPE -            670   2.3e-12   46.8   0.0   1   1   3.8e-15   5.1e-12   45.7   0.0     3    77   594   667   592   668 0.95 BRCA1 C Terminus (BRCT) domain
DNA_ligase_ZBD       PF03119.11    28 sp|Q7CJF3|DNLJ_YERPE -            670   5.8e-12   45.0   2.9   1   1   4.3e-15   5.8e-12   45.0   2.9     1    28   407   434   407   434 0.97 NAD-dependent DNA ligase C4 zinc finger domain
PTCB-BRCT            PF12738.2     63 sp|Q7CJF3|DNLJ_YERPE -            670   1.2e-06   28.2   0.1   1   1   2.2e-09   2.9e-06   27.0   0.1    12    59   612   659   601   660 0.86 twin BRCT domain
HHH                  PF00633.18    30 sp|Q7CJF3|DNLJ_YERPE -            670   1.8e-06   27.3   0.0   2   2   2.4e-08   3.2e-05   23.3   0.0     1    30   534   563   534   563 0.94 Helix-hairpin-helix motif
5_3_exonuc           PF01367.15   101 sp|Q7CJF3|DNLJ_YERPE -            670    0.0023   18.1   0.1   2   2   6.5e-05     0.087   13.0   0.0    22    53   516   548   514   581 0.79 5'-3' exonuclease, C-terminal SAM fold
DNA_pol3_alpha       PF07733.7    426 sp|O68770|DPO3A_YERPE -           1174  6.6e-124  413.5   0.0   1   1  3.3e-127  9.8e-124  413.0   0.0     3   423   309   740   307   742 0.92 Bacterial DNA polymerase III alpha subunit
PHP                  PF02811.14   175 sp|O68770|DPO3A_YERPE -           1174   7.7e-17   61.6   0.0   1   1   6.1e-20   1.8e-16   60.4   0.0     3   167     4   184     3   191 0.93 PHP domain
HHH_6                PF14579.1     90 sp|O68770|DPO3A_YERPE -           1174     4e-14   52.4   0.0   1   1   4.8e-17   1.4e-13   50.6   0.0     1    84   866   958   866   961 0.92 Helix-hairpin-helix motif
UDG                  PF03167.14   152 sp|O68770|DPO3A_YERPE -           1174   7.5e-11   41.7   0.0   1   1   5.4e-14   1.6e-10   40.6   0.0     7   151  1025  1168  1020  1169 0.84 Uracil DNA glycosylase superfamily
IMS                  PF00817.15   149 sp|Q8ZBZ9|DPO4_YERPE -            352   5.4e-49  165.8   0.0   1   1   4.4e-52   1.1e-48  164.8   0.0     1   149     7   154     7   154 0.99 impB/mucB/samB family
IMS_C                PF11799.3    127 sp|Q8ZBZ9|DPO4_YERPE -            352   7.3e-12   45.3   0.2   1   1   6.9e-15   1.7e-11   44.1   0.1     2   122   232   345   231   349 0.84 impB/mucB/samB family C-terminal domain
IMS_HHH              PF11798.3     32 sp|Q8ZBZ9|DPO4_YERPE -            352   2.8e-08   33.3   0.0   1   1   3.2e-11   7.8e-08   31.9   0.0     4    32   169   197   166   197 0.92 IMS family HHH motif
HHH_5                PF14520.1     60 sp|Q8ZBZ9|DPO4_YERPE -            352   8.5e-05   22.6   0.1   1   1   9.9e-08   0.00024   21.1   0.1     7    49   178   221   173   266 0.86 Helix-hairpin-helix domain
DNA_pol_lambd_f      PF10391.4     52 sp|Q8ZBZ9|DPO4_YERPE -            352      0.13   11.7   0.0   1   1   0.00012      0.29   10.6   0.0     4    32   178   206   177   214 0.88 Fingers domain of DNA polymerase lambda
Clr5                 PF14420.1     54 sp|Q8ZBZ9|DPO4_YERPE -            352      0.17   11.7   0.2   1   1   0.00015      0.38   10.6   0.2     3    27   254   278   253   304 0.87 Clr5 domain
Ferritin             PF00210.19   142 sp|Q7CJ65|DPS_YERPE  -            167   8.8e-18   64.4   0.3   1   1   1.5e-21   1.1e-17   64.1   0.3     1   136    30   166    30   167 0.92 Ferritin-like domain
PEP-utilisers_N      PF05524.8    123 sp|Q7CJ65|DPS_YERPE  -            167     0.065   13.0   0.3   2   2   2.9e-05      0.22   11.3   0.1     8    69    88   147    85   155 0.84 PEP-utilising enzyme, N-terminal
DSBA                 PF01323.15   193 sp|Q9XBV2|DSBA_YERPE -            207   1.8e-29  102.6   2.4   1   1   5.8e-32   1.7e-28   99.4   2.4     1   190    40   194    40   197 0.90 DSBA-like thioredoxin domain
Thioredoxin_4        PF13462.1    163 sp|Q9XBV2|DSBA_YERPE -            207   9.3e-14   51.7   0.0   1   1   3.9e-17   1.2e-13   51.4   0.0    16   151    40   181    34   195 0.77 Thioredoxin
Thioredoxin_2        PF13098.1    112 sp|Q9XBV2|DSBA_YERPE -            207   0.00047   20.3   0.2   1   1   8.8e-07    0.0026   17.9   0.2     5    94    37   176    33   193 0.62 Thioredoxin-like domain
Thioredoxin          PF00085.15   104 sp|Q9XBV2|DSBA_YERPE -            207    0.0055   16.3   0.1   1   2   7.6e-05      0.23   11.1   0.0    19    41    38    60    24    83 0.82 Thioredoxin
DsbB                 PF02600.11   156 sp|Q8ZEM1|DSBB_YERPE -            176   1.9e-43  147.9  15.6   1   1   5.5e-47   2.1e-43  147.8  15.6     3   155    10   161     1   162 0.96 Disulfide bond formation protein DsbB
PsbJ                 PF01788.12    40 sp|Q8ZEM1|DSBB_YERPE -            176      0.08   12.4   1.6   2   2     6e-05      0.22   11.0   0.8     8    27   142   161   139   163 0.91 PsbJ
TMEMspv1-c74-12      PF11044.3     49 sp|Q8ZEM1|DSBB_YERPE -            176     0.088   12.3   0.1   1   1   5.8e-05      0.21   11.1   0.1     1    22   142   163   142   176 0.84 Plectrovirus spv1-c74 ORF 12 transmembrane protein
DPM3                 PF08285.6     91 sp|Q8ZEM1|DSBB_YERPE -            176      0.85    9.5   0.0   3   3   0.00023      0.85    9.5   0.0    29    63   131   165   117   171 0.82 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
DsbC                 PF11412.3    117 sp|Q8ZIY9|DSBD_YERPE -            595   5.9e-37  126.0   0.2   1   1   6.4e-40   9.5e-37  125.3   0.2     1   115    39   150    39   152 0.98 Disulphide bond corrector protein DsbC
DsbD                 PF02683.10   211 sp|Q8ZIY9|DSBD_YERPE -            595   9.3e-23   80.9  18.0   1   1   6.3e-26   9.3e-23   80.9  18.0     2   209   198   403   197   405 0.80 Cytochrome C biogenesis protein transmembrane region
Thioredoxin_2        PF13098.1    112 sp|Q8ZIY9|DSBD_YERPE -            595   7.3e-15   55.1   0.0   1   1     1e-17   1.6e-14   54.0   0.0     1   112   491   587   491   587 0.89 Thioredoxin-like domain
DsbD_2               PF13386.1    199 sp|Q8ZIY9|DSBD_YERPE -            595   1.2e-13   51.2  21.8   1   2     8e-17   1.2e-13   51.2  21.8     2   182   197   382   196   402 0.78 Cytochrome C biogenesis protein transmembrane region
Thioredoxin_7        PF13899.1     82 sp|Q8ZIY9|DSBD_YERPE -            595   4.1e-13   49.1   0.1   1   1   5.8e-16   8.6e-13   48.1   0.1    13    81   491   563   486   564 0.86 Thioredoxin-like
Thioredoxin          PF00085.15   104 sp|Q8ZIY9|DSBD_YERPE -            595   6.1e-09   35.4   0.0   1   1   6.8e-12     1e-08   34.7   0.0    15   100   491   586   480   590 0.71 Thioredoxin
Thioredoxin_8        PF13905.1     95 sp|Q8ZIY9|DSBD_YERPE -            595    0.0005   20.1   0.1   1   2   0.00063      0.93    9.6   0.1     1    20   495   514   495   518 0.92 Thioredoxin-like
AhpC-TSA             PF00578.16   124 sp|Q8ZIY9|DSBD_YERPE -            595     0.043   13.5   0.0   1   1     6e-05     0.088   12.4   0.0    20    93   490   567   477   583 0.80 AhpC/TSA family
Thioredox_DsbH       PF03190.10   163 sp|Q8ZIY9|DSBD_YERPE -            595     0.043   13.5   0.0   1   1     5e-05     0.075   12.7   0.0    32    71   490   529   467   542 0.82 Protein of unknown function, DUF255
PDZ_1                PF12812.2     78 sp|Q8ZIY9|DSBD_YERPE -            595      0.12   12.3   0.0   1   1   0.00027       0.4   10.6   0.0    33    74   452   492   441   495 0.87 PDZ-like domain
Redoxin              PF08534.5    146 sp|Q8ZD52|DSBE_YERPE -            188   1.1e-27   96.3   0.0   1   1   6.5e-31   1.4e-27   96.0   0.0     3   136    47   169    45   177 0.95 Redoxin
AhpC-TSA             PF00578.16   124 sp|Q8ZD52|DSBE_YERPE -            188     2e-15   56.5   0.0   1   1   1.2e-18   2.6e-15   56.2   0.0     1   124    46   163    46   163 0.89 AhpC/TSA family
Thioredoxin_2        PF13098.1    112 sp|Q8ZD52|DSBE_YERPE -            188   1.5e-09   38.0   0.0   1   1   1.1e-12   2.2e-09   37.4   0.0     4   103    72   168    69   176 0.85 Thioredoxin-like domain
Thioredoxin_8        PF13905.1     95 sp|Q8ZD52|DSBE_YERPE -            188   2.7e-07   30.6   0.0   1   1   2.1e-10   4.4e-07   29.9   0.0     1    94    73   159    73   160 0.88 Thioredoxin-like
Thioredoxin          PF00085.15   104 sp|Q8ZD52|DSBE_YERPE -            188   1.1e-05   25.0   0.0   1   1   8.8e-09   1.9e-05   24.3   0.0     7    46    62   101    56   130 0.84 Thioredoxin
Thioredoxin_7        PF13899.1     82 sp|Q8ZD52|DSBE_YERPE -            188   0.00054   19.9   0.7   1   1   4.9e-07     0.001   19.0   0.1    13    34    69    90    64   128 0.84 Thioredoxin-like
DUF929               PF06053.6    249 sp|Q8ZD52|DSBE_YERPE -            188      0.16   11.0   0.0   1   1    0.0001      0.21   10.6   0.0     2    76     9    91     8    97 0.66 Domain of unknown function (DUF929)
DSRB                 PF10781.4     62 sp|Q8ZFN8|DSRB_YERPE -             63   1.6e-42  142.8   0.6   1   1   1.2e-46   1.7e-42  142.7   0.6     1    61     1    61     1    62 0.98 Dextransucrase DSRB
Tyr_Deacylase        PF02580.11   145 sp|P58534|DTD_YERPE  -            145   2.5e-52  176.7   0.1   1   1   1.9e-56   2.8e-52  176.5   0.1     2   144     3   144     2   145 0.99 D-Tyr-tRNA(Tyr) deacylase
PTR2                 PF00854.16   373 sp|Q0WEG0|DTPA_YERPE -            501     6e-69  232.5  25.2   1   1   1.9e-72   9.2e-69  231.9  25.2    10   372    90   430    88   431 0.93 POT family
MFS_1                PF07690.11   352 sp|Q0WEG0|DTPA_YERPE -            501   3.1e-19   68.8  60.3   1   2   1.2e-17   5.7e-14   51.5  34.6    11   296    36   295    26   317 0.77 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q0WEG0|DTPA_YERPE -            501   3.1e-19   68.8  60.3   2   2   4.4e-07    0.0022   16.8  25.7     4   172   277   480   275   495 0.64 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|Q0WEG0|DTPA_YERPE -            501   2.9e-05   22.6   6.5   1   3     6e-09   2.9e-05   22.6   6.5   219   344    15   141     4   148 0.92 MFS/sugar transport protein
Dus                  PF01207.12   310 sp|Q8ZJ14|DUSA_YERPE -            345     1e-94  316.8   0.0   1   1   3.4e-98   1.3e-94  316.5   0.0     2   297    24   323    23   335 0.97 Dihydrouridine synthase (Dus)
Xylo_C               PF12529.3    178 sp|Q8ZJ14|DUSA_YERPE -            345     0.076   12.3   0.0   1   1   3.3e-05      0.12   11.7   0.0   106   148     4    46     1    52 0.87 Xylosyltransferase C terminal
His_biosynth         PF00977.16   229 sp|Q8ZJ14|DUSA_YERPE -            345     0.081   12.1   0.0   2   2   0.00011      0.43    9.8   0.0    74   117   215   257   195   275 0.85 Histidine biosynthesis protein
SOR_SNZ              PF01680.12   209 sp|Q8ZJ14|DUSA_YERPE -            345     0.096   12.2   0.1   1   1   4.6e-05      0.17   11.4   0.1    28    82    91   151    85   156 0.72 SOR/SNZ family
Dus                  PF01207.12   310 sp|Q8ZAX7|DUSB_YERPE -            321  8.9e-113  376.2   0.0   1   1  6.6e-116  9.9e-113  376.0   0.0     2   307    14   318    12   321 0.98 Dihydrouridine synthase (Dus)
His_biosynth         PF00977.16   229 sp|Q8ZAX7|DUSB_YERPE -            321     3e-06   26.6   0.0   1   1   3.5e-09   5.2e-06   25.8   0.0    78   222    87   226    77   231 0.84 Histidine biosynthesis protein
DHO_dh               PF01180.16   295 sp|Q8ZAX7|DUSB_YERPE -            321     1e-05   24.6   0.0   1   2     1e-06    0.0015   17.5   0.0   101   196    69   169    32   178 0.71 Dihydroorotate dehydrogenase
PEP_mutase           PF13714.1    238 sp|Q8ZAX7|DUSB_YERPE -            321    0.0036   16.5   0.0   1   1     6e-06    0.0089   15.2   0.0    58   132   122   192   115   201 0.83 Phosphoenolpyruvate phosphomutase
Oxidored_FMN         PF00724.15   341 sp|Q8ZAX7|DUSB_YERPE -            321    0.0062   15.5   0.0   1   1   8.1e-06     0.012   14.6   0.0   273   324   176   227   149   242 0.81 NADH:flavin oxidoreductase / NADH oxidase family
SOR_SNZ              PF01680.12   209 sp|Q8ZAX7|DUSB_YERPE -            321    0.0064   16.1   1.5   1   2   0.00041      0.61    9.6   0.3    26    87    81   148    75   166 0.78 SOR/SNZ family
NanE                 PF04131.9    192 sp|Q8ZAX7|DUSB_YERPE -            321    0.0065   15.4   0.0   1   1   9.6e-06     0.014   14.3   0.0   111   176   161   227   149   239 0.78 Putative N-acetylmannosamine-6-phosphate epimerase
NMO                  PF03060.10   330 sp|Q8ZAX7|DUSB_YERPE -            321      0.04   13.0   0.1   2   2   7.4e-05      0.11   11.6   0.1   181   219   185   224   154   226 0.86 Nitronate monooxygenase
Pterin_bind          PF00809.17   210 sp|Q8ZAX7|DUSB_YERPE -            321     0.042   13.2   0.1   1   1   8.3e-05      0.12   11.6   0.1    17    42    75   100    69   138 0.74 Pterin binding enzyme
ThiG                 PF05690.9    247 sp|Q8ZAX7|DUSB_YERPE -            321     0.093   11.7   1.3   2   2   0.00021      0.31   10.0   0.1   160   206   179   226   148   230 0.87 Thiazole biosynthesis protein ThiG
Dus                  PF01207.12   310 sp|Q8ZGV2|DUSC_YERPE -            312   1.4e-89  299.9   0.0   1   1   4.5e-93   1.7e-89  299.7   0.0     1   277     4   280     4   308 0.92 Dihydrouridine synthase (Dus)
Oxidored_FMN         PF00724.15   341 sp|Q8ZGV2|DUSC_YERPE -            312   0.00093   18.2   0.0   1   1   3.9e-07    0.0015   17.6   0.0   264   339   166   242   144   244 0.79 NADH:flavin oxidoreductase / NADH oxidase family
His_biosynth         PF00977.16   229 sp|Q8ZGV2|DUSC_YERPE -            312    0.0081   15.4   0.1   1   1   7.5e-06     0.028   13.7   0.1   146   221   147   225   108   230 0.73 Histidine biosynthesis protein
DUF849               PF05853.7    272 sp|Q8ZGV2|DUSC_YERPE -            312     0.053   12.3   0.0   1   1   1.9e-05      0.07   11.9   0.0    27   125   149   241   120   290 0.70 Prokaryotic protein of unknown function (DUF849)
dUTPase              PF00692.14   129 sp|Q8ZJP5|DUT_YERPE  -            151   2.9e-40  136.7   0.0   1   1   4.4e-44   3.2e-40  136.5   0.0     2   129    16   149    15   149 0.97 dUTPase
Herpes_ORF11         PF04797.8    379 sp|Q8ZJP5|DUT_YERPE  -            151       0.1   11.0   0.0   1   1   2.6e-05      0.19   10.1   0.0   323   351    95   123    93   135 0.84 Herpesvirus dUTPase protein
DXP_reductoisom      PF02670.11   129 sp|Q8ZH62|DXR_YERPE  -            398     8e-47  158.9   0.6   1   1   2.9e-50   1.4e-46  158.1   0.6     1   129     4   132     4   132 0.99 1-deoxy-D-xylulose 5-phosphate reductoisomerase
DXPR_C               PF13288.1    121 sp|Q8ZH62|DXR_YERPE  -            398   6.1e-42  142.4   0.0   1   1     2e-45   9.9e-42  141.7   0.0     1   121   271   389   271   389 0.98 DXP reductoisomerase C-terminal domain
DXP_redisom_C        PF08436.7     84 sp|Q8ZH62|DXR_YERPE  -            398   3.3e-35  119.8   0.0   1   1   1.5e-38   7.3e-35  118.7   0.0     1    84   146   239   146   239 0.97 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
DXP_synthase_N       PF13292.1    270 sp|Q8ZC45|DXS_YERPE  -            619    1e-113  378.7   0.0   1   2  1.1e-116  2.7e-113  377.4   0.0     4   270    14   282    11   282 0.98 1-deoxy-D-xylulose-5-phosphate synthase
Transket_pyr         PF02779.19   178 sp|Q8ZC45|DXS_YERPE  -            619   7.7e-40  136.2   0.1   1   1   5.7e-43   1.4e-39  135.4   0.1     4   174   320   479   318   482 0.97 Transketolase, pyrimidine binding domain
Transketolase_C      PF02780.15   124 sp|Q8ZC45|DXS_YERPE  -            619   7.2e-28   97.0   0.0   1   1   7.3e-31   1.8e-27   95.7   0.0     1   124   494   610   494   610 0.96 Transketolase, C-terminal domain
Transketolase_N      PF00456.16   333 sp|Q8ZC45|DXS_YERPE  -            619     7e-08   31.6   0.1   1   2   9.4e-08   0.00023   20.0   0.1   145   192   144   190   118   198 0.86 Transketolase, thiamine diphosphate binding domain
Transketolase_N      PF00456.16   333 sp|Q8ZC45|DXS_YERPE  -            619     7e-08   31.6   0.1   2   2   0.00021      0.52    9.0   0.0   203   261   243   301   234   306 0.88 Transketolase, thiamine diphosphate binding domain
TPP_enzyme_C         PF02775.16   153 sp|Q8ZC45|DXS_YERPE  -            619   8.1e-06   25.4   0.6   1   2   1.7e-08   4.3e-05   23.1   0.2    29    84   126   183   104   202 0.79 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
E1_dh                PF00676.15   300 sp|Q8ZC45|DXS_YERPE  -            619   4.9e-05   22.1   0.2   1   1   3.5e-08   8.8e-05   21.3   0.2   105   166   125   186   112   191 0.83 Dehydrogenase E1 component
Gp_dh_C              PF02800.15   157 sp|Q7CGS4|E4PD_YERPE -            338   8.5e-50  168.2   0.1   1   1   4.7e-53   1.2e-49  167.8   0.1     2   157   161   316   160   316 0.99 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_N              PF00044.19   151 sp|Q7CGS4|E4PD_YERPE -            338   1.2e-49  168.1   0.0   1   2   1.5e-52   3.8e-49  166.5   0.0     1   151     3   155     3   155 0.98 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TrkA_N               PF02254.13   116 sp|Q7CGS4|E4PD_YERPE -            338     0.011   15.7   0.0   1   1   8.5e-06     0.021   14.8   0.0     1    33     5    39     5    55 0.80 TrkA-N domain
GFO_IDH_MocA         PF01408.17   120 sp|Q7CGS4|E4PD_YERPE -            338     0.028   14.9   0.0   1   1   2.6e-05     0.065   13.7   0.0     1    44     3    46     3    96 0.88 Oxidoreductase family, NAD-binding Rossmann fold
F420_oxidored        PF03807.12    96 sp|Q7CGS4|E4PD_YERPE -            338     0.049   14.0   0.0   1   1   4.8e-05      0.12   12.8   0.0     1    44     4    46     4    66 0.81 NADP oxidoreductase coenzyme F420-dependent
ADH_zinc_N           PF00107.21   130 sp|Q7CGS4|E4PD_YERPE -            338     0.069   12.6   0.0   1   1   6.1e-05      0.15   11.6   0.0    15    98    28   132    11   143 0.81 Zinc-binding dehydrogenase
Ecotin               PF03974.8    128 sp|Q8ZGS0|ECOT_YERPE -            169   1.1e-49  167.3   0.0   1   1   1.8e-53   1.3e-49  167.1   0.0     2   127    34   159    33   160 0.98 Ecotin
META                 PF03724.11   101 sp|Q8ZGS0|ECOT_YERPE -            169     0.097   12.5   0.2   1   1   2.3e-05      0.17   11.7   0.2    58    82   102   126    69   139 0.75 META domain
Dyp_perox            PF04261.7    313 sp|Q7CI09|EFEB_YERPE -            434    2e-100  335.6   0.0   1   1  3.1e-104  2.3e-100  335.3   0.0     1   312    73   421    73   422 0.98 Dyp-type peroxidase family
TAT_signal           PF10518.4     26 sp|Q7CI09|EFEB_YERPE -            434      0.31   11.1   2.7   1   1    0.0001      0.75    9.9   2.7     2    23    21    42    20    45 0.89 TAT (twin-arginine translocation) pathway signal sequence
Peptidase_M75        PF09375.5    288 sp|Q0WFT9|EFEO_YERPE -            376   5.6e-53  180.1   2.9   1   1   9.7e-57   7.2e-53  179.7   2.9     2   288   137   369   136   369 0.95 Imelysin
Cupredoxin_1         PF13473.1    104 sp|Q0WFT9|EFEO_YERPE -            376   1.5e-24   85.8   0.0   1   1   3.5e-28   2.6e-24   85.1   0.0     3   104    13   116    11   116 0.95 Cupredoxin-like domain
FTR1                 PF03239.9    306 sp|Q0WFU0|EFEU_YERPE -            282   9.8e-68  228.3  17.1   1   1   6.4e-71   1.2e-67  228.0  17.1     1   289     1   259     1   272 0.96 Iron permease FTR1 family
MFS_1                PF07690.11   352 sp|Q0WFU0|EFEU_YERPE -            282   3.2e-05   22.8  20.3   1   1   1.7e-08   3.2e-05   22.8  20.3    93   291     5   198     1   217 0.70 Major Facilitator Superfamily
DUF1980              PF09323.5    182 sp|Q0WFU0|EFEU_YERPE -            282      0.11   12.2   0.2   2   2   0.00026      0.48   10.1   0.0    72   103   246   278   234   281 0.78 Domain of unknown function (DUF1980)
CoxIIa               PF08113.6     34 sp|Q0WFU0|EFEU_YERPE -            282      0.23   11.2   0.1   1   2   0.00012      0.23   11.2   0.1     7    24    73    90    68    91 0.92 Cytochrome c oxidase subunit IIa family
Polysacc_synt_C      PF14667.1    146 sp|Q0WFU0|EFEU_YERPE -            282      0.43   10.3  24.4   1   3   2.2e-05     0.041   13.6   2.7    38   112    16    90    13   105 0.75 Polysaccharide biosynthesis C-terminal domain
DUF4149              PF13664.1    101 sp|Q0WFU0|EFEU_YERPE -            282       6.6    6.8  15.0   1   3     9e-05      0.17   11.9   1.6     4    61    37   101    32   130 0.55 Domain of unknown function (DUF4149)
GTP_EFTU             PF00009.22   188 sp|Q8ZJB3|EFG_YERPE  -            702   1.7e-63  213.4   0.1   1   1   9.6e-67   2.9e-63  212.7   0.1     2   187     9   287     8   288 0.95 Elongation factor Tu GTP binding domain
EFG_IV               PF03764.13   120 sp|Q8ZJB3|EFG_YERPE  -            702   1.5e-47  160.0   0.0   1   1     1e-50   3.1e-47  159.0   0.0     1   120   486   607   486   607 0.99 Elongation factor G, domain IV
EFG_II               PF14492.1     75 sp|Q8ZJB3|EFG_YERPE  -            702   1.2e-34  117.9   0.0   1   1   8.6e-38   2.5e-34  116.9   0.0     1    75   411   485   411   485 0.99 Elongation Factor G, domain II
EFG_C                PF00679.19    89 sp|Q8ZJB3|EFG_YERPE  -            702   2.4e-31  107.4   0.5   1   1   1.8e-34   5.3e-31  106.3   0.1     1    87   609   694   609   696 0.97 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZJB3|EFG_YERPE  -            702     7e-17   61.3   0.2   1   1   6.4e-20   1.9e-16   59.9   0.2     1    74   331   398   331   398 0.96 Elongation factor Tu domain 2
Elong-fact-P_C       PF09285.6     56 sp|Q8ZGK7|EFPL_YERPE -            190   1.1e-20   72.6   0.0   1   1   7.3e-24   2.7e-20   71.4   0.0     1    56   133   188   133   188 0.99 Elongation factor P, C-terminal
EFP                  PF01132.15    55 sp|Q8ZGK7|EFPL_YERPE -            190   5.1e-15   54.8   0.8   1   1   2.2e-18   8.1e-15   54.2   0.8     1    54    69   124    69   125 0.90 Elongation factor P (EF-P) OB domain
EFP_N                PF08207.7     58 sp|Q8ZGK7|EFPL_YERPE -            190   1.9e-12   46.8   0.1   1   1   8.3e-16   3.1e-12   46.1   0.1     1    57     3    61     3    62 0.94 Elongation factor P (EF-P) KOW-like domain
DUF4357              PF14267.1     55 sp|Q8ZGK7|EFPL_YERPE -            190      0.17   11.5   0.1   1   2   0.00018      0.68    9.5   0.0     5    30     7    32     3    38 0.88 Domain of unknown function (DUF4357)
Elong-fact-P_C       PF09285.6     56 sp|Q8ZIY0|EFP_YERPE  -            188   6.5e-27   92.6   0.3   1   1   3.7e-30   1.4e-26   91.6   0.3     1    56   131   186   131   186 0.99 Elongation factor P, C-terminal
EFP_N                PF08207.7     58 sp|Q8ZIY0|EFP_YERPE  -            188   1.4e-23   82.4   0.1   1   1   1.4e-26   5.1e-23   80.6   0.0     3    57     7    61     5    62 0.97 Elongation factor P (EF-P) KOW-like domain
EFP                  PF01132.15    55 sp|Q8ZIY0|EFP_YERPE  -            188   1.8e-23   81.9   0.1   1   1   8.2e-27     3e-23   81.2   0.1     3    55    71   123    69   123 0.97 Elongation factor P (EF-P) OB domain
Ubiquitin_3          PF14836.1     88 sp|Q8ZIY0|EFP_YERPE  -            188      0.08   12.6   0.0   1   1   3.4e-05      0.12   11.9   0.0    16    68    52   104    44   119 0.90 Ubiquitin-like domain
EF_TS                PF00889.14   221 sp|Q8ZH65|EFTS_YERPE -            285   2.1e-72  243.0   2.8   1   1   4.3e-76   2.1e-72  243.0   2.8     1   221    57   265    57   265 0.98 Elongation factor TS
UBA                  PF00627.26    37 sp|Q8ZH65|EFTS_YERPE -            285     5e-09   35.7   1.2   1   2   3.4e-12   1.7e-08   34.0   0.7     1    35     4    39     4    40 0.95 UBA/TS-N domain
SMP_2                PF10144.4    210 sp|Q8ZH65|EFTS_YERPE -            285   0.00043   19.4   0.0   1   1   1.4e-07   0.00068   18.8   0.0    71   125    96   150    83   172 0.87 Bacterial virulence factor haemolysin
GTP_EFTU             PF00009.22   188 sp|Q8ZJB2|EFTU1_YERPE -            394   8.3e-60  201.4   0.0   1   1   6.1e-63   1.1e-59  201.0   0.0     1   187    10   201    10   202 0.94 Elongation factor Tu GTP binding domain
GTP_EFTU_D3          PF03143.12    99 sp|Q8ZJB2|EFTU1_YERPE -            394   3.7e-34  116.8   0.1   1   1   5.8e-37   1.1e-33  115.3   0.0     1    98   298   392   298   393 0.98 Elongation factor Tu C-terminal domain
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZJB2|EFTU1_YERPE -            394   5.9e-18   64.7   6.6   1   1   1.4e-20   2.6e-17   62.6   6.4     1    74   225   294   225   294 0.96 Elongation factor Tu domain 2
GTP_EFTU_D4          PF14578.1     81 sp|Q8ZJB2|EFTU1_YERPE -            394   4.1e-05   23.1   3.9   1   1   3.1e-08   5.7e-05   22.6   2.2     8    79   214   293   209   294 0.86 Elongation factor Tu domain 4
MMR_HSR1             PF01926.18   116 sp|Q8ZJB2|EFTU1_YERPE -            394   9.3e-05   22.3   0.0   1   1   1.1e-07    0.0002   21.2   0.0     2   113    15   133    14   137 0.69 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|Q8ZJB2|EFTU1_YERPE -            394    0.0035   17.8   0.0   1   1   3.9e-06    0.0071   16.8   0.0     2   119    15   139    14   139 0.77 Miro-like protein
Lsm_C                PF14894.1     64 sp|Q8ZJB2|EFTU1_YERPE -            394      0.04   13.4   3.8   1   1   4.3e-05      0.08   12.4   3.8    13    42   231   260   226   261 0.93 Lsm C-terminal
AAA_29               PF13555.1     62 sp|Q8ZJB2|EFTU1_YERPE -            394     0.071   12.6   0.3   1   1   0.00011       0.2   11.1   0.0    29    55    18    47     3    53 0.76 P-loop containing region of AAA domain
GTP_EFTU             PF00009.22   188 sp|Q8ZAN8|EFTU2_YERPE -            394     2e-61  206.7   0.0   1   1   1.6e-64     3e-61  206.1   0.0     1   188    10   202    10   202 0.95 Elongation factor Tu GTP binding domain
GTP_EFTU_D3          PF03143.12    99 sp|Q8ZAN8|EFTU2_YERPE -            394   2.8e-34  117.2   0.1   1   1   6.3e-37   1.2e-33  115.2   0.0     1    98   298   392   298   393 0.98 Elongation factor Tu C-terminal domain
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZAN8|EFTU2_YERPE -            394   1.8e-17   63.1   7.5   1   1   2.4e-20   4.4e-17   61.9   7.0     1    74   225   294   225   294 0.96 Elongation factor Tu domain 2
GTP_EFTU_D4          PF14578.1     81 sp|Q8ZAN8|EFTU2_YERPE -            394   3.9e-05   23.2   2.9   1   2   6.5e-08   0.00012   21.6   1.3     8    79   214   293   208   294 0.78 Elongation factor Tu domain 4
MMR_HSR1             PF01926.18   116 sp|Q8ZAN8|EFTU2_YERPE -            394   9.4e-05   22.3   0.0   1   1   1.1e-07    0.0002   21.2   0.0     2   113    15   133    14   137 0.68 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|Q8ZAN8|EFTU2_YERPE -            394    0.0075   16.7   0.0   1   1   9.4e-06     0.017   15.5   0.0     2    87    15   112    14   139 0.81 Miro-like protein
Lsm_C                PF14894.1     64 sp|Q8ZAN8|EFTU2_YERPE -            394     0.022   14.2   3.6   1   1   2.5e-05     0.046   13.2   3.6    13    42   231   260   226   261 0.93 Lsm C-terminal
AAA_29               PF13555.1     62 sp|Q8ZAN8|EFTU2_YERPE -            394     0.072   12.6   0.3   1   1   0.00011       0.2   11.1   0.0    29    55    18    47     3    53 0.76 P-loop containing region of AAA domain
AP_endonuc_2         PF01261.19   213 sp|Q8ZGJ1|END4_YERPE -            285   2.7e-39  134.6   0.8   1   1   6.6e-43   3.2e-39  134.4   0.8     3   213    20   239    18   239 0.96 Xylose isomerase-like TIM barrel
Flagellin_IN         PF07196.8     56 sp|Q8ZGJ1|END4_YERPE -            285     0.018   14.9   0.1   1   1   6.5e-06     0.032   14.1   0.1    22    48   122   152   112   157 0.81 Flagellin hook IN motif
rve                  PF00665.21   120 sp|Q8ZGJ1|END4_YERPE -            285     0.093   12.8   0.1   1   1   4.7e-05      0.23   11.5   0.0    19    82   166   227   137   247 0.90 Integrase core domain
MMR_HSR1             PF01926.18   116 sp|Q8ZJS0|ENGB_YERPE -            216   3.2e-16   59.3   0.0   1   1   2.1e-19   4.5e-16   58.8   0.0     1   116    30   148    30   148 0.84 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|Q8ZJS0|ENGB_YERPE -            216   1.8e-05   24.0   0.0   1   1   1.3e-08   2.7e-05   23.4   0.0     1   155    29   194    29   195 0.75 Ferrous iron transport protein B
Dynamin_N            PF00350.18   168 sp|Q8ZJS0|ENGB_YERPE -            216   0.00013   21.8   0.0   1   2   0.00019       0.4   10.5   0.1     1    28    31    58    31    69 0.85 Dynamin family
Dynamin_N            PF00350.18   168 sp|Q8ZJS0|ENGB_YERPE -            216   0.00013   21.8   0.0   2   2   0.00031      0.67    9.7   0.0    98   151    71   133    56   162 0.76 Dynamin family
GTP_EFTU             PF00009.22   188 sp|Q8ZJS0|ENGB_YERPE -            216   0.00015   21.2   0.0   2   2   3.5e-06    0.0074   15.7   0.0    95   186   112   199   103   201 0.87 Elongation factor Tu GTP binding domain
DUF258               PF03193.11   161 sp|Q8ZJS0|ENGB_YERPE -            216    0.0012   18.0   0.0   1   1   9.8e-07    0.0021   17.2   0.0    38   104    31    91     2   110 0.79 Protein of unknown function, DUF258
SRPRB                PF09439.5    181 sp|Q8ZJS0|ENGB_YERPE -            216     0.057   12.6   0.0   1   1   4.9e-05       0.1   11.7   0.0     6    84    31   119    27   129 0.66 Signal recognition particle receptor beta subunit
PGM_PMM_I            PF02878.11   138 sp|Q8ZJS0|ENGB_YERPE -            216      0.16   11.4   0.0   1   1   0.00013      0.26   10.7   0.0    20    73    91   144    83   154 0.90 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Enolase_C            PF00113.17   296 sp|Q8ZBN2|ENO_YERPE  -            431  2.9e-137  456.5   2.3   1   1  9.8e-141  3.6e-137  456.2   2.3     2   294   144   429   143   431 0.98 Enolase, C-terminal TIM barrel domain
Enolase_N            PF03952.11   132 sp|Q8ZBN2|ENO_YERPE  -            431   1.7e-59  199.4   0.8   1   1     1e-62   3.7e-59  198.3   0.8     1   132     3   134     3   134 0.99 Enolase, N-terminal domain
MAAL_C               PF07476.6    249 sp|Q8ZBN2|ENO_YERPE  -            431   0.00022   20.2   0.4   2   2   3.1e-07    0.0012   17.8   0.0   134   217   306   390   268   396 0.83 Methylaspartate ammonia-lyase C-terminus
MR_MLE_C             PF13378.1    111 sp|Q8ZBN2|ENO_YERPE  -            431     0.001   19.0   0.9   2   2   1.3e-06    0.0047   16.8   0.0    10    73   327   394   320   425 0.77 Enolase C-terminal domain-like
tRNA-synt_2          PF00152.15   335 sp|Q8ZIX3|EPMA_YERPE -            325   2.9e-66  223.5   0.0   1   1   9.7e-70   3.6e-66  223.2   0.0    20   333    14   323     7   325 0.83 tRNA synthetases class II (D, K and N)
DUF1053              PF06327.9    101 sp|Q8ZIX3|EPMA_YERPE -            325     0.023   15.0   0.3   1   2   0.00023      0.85    9.9   0.1     4    72     4   147     2   159 0.84 Domain of Unknown Function (DUF1053)
MMR_HSR1             PF01926.18   116 sp|Q8ZD71|ERA_YERPE  -            303   3.9e-21   75.1   0.0   1   1   1.4e-23   9.2e-21   73.9   0.0     2   116    12   126    11   126 0.81 50S ribosome-binding GTPase
KH_2                 PF07650.12    78 sp|Q8ZD71|ERA_YERPE  -            303   3.5e-18   64.9   0.8   1   1   2.6e-20   1.7e-17   62.7   0.8     1    77   210   286   210   287 0.95 KH domain
FeoB_N               PF02421.13   156 sp|Q8ZD71|ERA_YERPE  -            303   1.4e-14   53.6   0.2   1   1   3.2e-17   2.2e-14   53.0   0.2     3   153    12   167    11   170 0.84 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|Q8ZD71|ERA_YERPE  -            303   5.8e-10   38.9   0.6   1   1   7.8e-11   5.3e-08   32.5   0.6     6   187    12   175    10   176 0.69 Elongation factor Tu GTP binding domain
Dynamin_N            PF00350.18   168 sp|Q8ZD71|ERA_YERPE  -            303   1.1e-07   31.8   0.1   1   2   2.6e-08   1.8e-05   24.6   0.1     1    34    12    45    12    59 0.91 Dynamin family
AIG1                 PF04548.11   212 sp|Q8ZD71|ERA_YERPE  -            303     8e-07   28.3   0.1   1   1   3.3e-09   2.2e-06   26.9   0.0     3   109    12   115    11   118 0.78 AIG1 family
PduV-EutP            PF10662.4    143 sp|Q8ZD71|ERA_YERPE  -            303   2.8e-06   26.8   0.3   1   1   5.4e-08   3.6e-05   23.2   0.3     4   141    12   170    10   172 0.72 Ethanolamine utilisation - propanediol utilisation
AAA_22               PF13401.1    131 sp|Q8ZD71|ERA_YERPE  -            303   0.00024   21.2   0.0   1   1   5.9e-07    0.0004   20.5   0.0     3   113     8   148     4   179 0.80 AAA domain
DUF258               PF03193.11   161 sp|Q8ZD71|ERA_YERPE  -            303   0.00033   19.8   0.0   1   1   1.1e-06   0.00073   18.7   0.0    38    99    12    69     3    82 0.72 Protein of unknown function, DUF258
Miro                 PF08477.8    119 sp|Q8ZD71|ERA_YERPE  -            303   0.00035   21.0   0.0   1   1   1.3e-06   0.00088   19.7   0.0     2   117    12   126    12   128 0.52 Miro-like protein
cobW                 PF02492.14   178 sp|Q8ZD71|ERA_YERPE  -            303    0.0012   18.3   0.6   2   2   0.00024      0.16   11.4   0.1   106   171    82   148    39   151 0.76 CobW/HypB/UreG, nucleotide-binding domain
AAA_25               PF13481.1    194 sp|Q8ZD71|ERA_YERPE  -            303     0.012   15.0   0.0   1   1   2.7e-05     0.018   14.4   0.0    34    86    10    60     7   125 0.85 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZD71|ERA_YERPE  -            303     0.013   16.3   0.0   1   1   4.2e-05     0.028   15.2   0.0     2    19    12    29    11   114 0.80 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZD71|ERA_YERPE  -            303     0.015   15.6   0.0   1   1   4.4e-05      0.03   14.6   0.0     1    18    12    29    12    95 0.87 AAA domain
MobB                 PF03205.9    140 sp|Q8ZD71|ERA_YERPE  -            303     0.015   15.0   0.1   1   1   6.8e-05     0.046   13.4   0.0     3    49    12    56    11   131 0.66 Molybdopterin guanine dinucleotide synthesis protein B
NB-ARC               PF00931.17   287 sp|Q8ZD71|ERA_YERPE  -            303     0.037   12.8   0.0   1   2    0.0011      0.77    8.5   0.0    19    43     9    33     2    40 0.79 NB-ARC domain
Ras                  PF00071.17   162 sp|Q8ZD71|ERA_YERPE  -            303     0.044   13.1   0.1   1   1   0.00051      0.34   10.2   0.0     3   154    13   168    12   176 0.69 Ras family
SRPRB                PF09439.5    181 sp|Q8ZD71|ERA_YERPE  -            303      0.06   12.5   0.0   1   1   0.00026      0.17   11.0   0.0     6    87    12   101     8   142 0.68 Signal recognition particle receptor beta subunit
ABC_tran             PF00005.22   137 sp|Q8ZD71|ERA_YERPE  -            303      0.11   12.7   0.2   1   1   0.00032      0.21   11.8   0.2    14    36    12    34     8   148 0.90 ABC transporter
AAA_14               PF13173.1    128 sp|Q8ZD71|ERA_YERPE  -            303      0.12   12.2   0.0   1   1   0.00039      0.27   11.1   0.0     4    27    11    34     9    82 0.84 AAA domain
Fe-S_biosyn          PF01521.15   112 sp|Q0WBQ9|ERPA_YERPE -            114   3.8e-20   71.9   0.0   1   1   2.8e-24   4.2e-20   71.7   0.0     3   111     9   109     7   110 0.95 Iron-sulphur cluster biosynthesis
Rnf-Nqr              PF02508.9    190 sp|Q8ZEC8|ETCA_YERPE -            193   1.1e-70  237.0  21.3   1   1   2.5e-74   1.3e-70  236.9  21.3     1   189     1   191     1   192 0.99 Rnf-Nqr subunit, membrane protein
DUF2881              PF11087.3     54 sp|Q8ZEC8|ETCA_YERPE -            193     0.093   12.2   0.5   1   2   1.9e-05     0.093   12.2   0.5     7    44   108   146   105   153 0.81 Protein of unknown function (DUF2881)
Fer4_21              PF14697.1     59 sp|Q8ZEC9|ETCB_YERPE -            188   2.2e-15   56.2  14.7   1   1   2.2e-18   2.2e-15   56.2  14.7     1    59   110   164   110   164 0.96 4Fe-4S dicluster domain
FeS                  PF04060.8     35 sp|Q8ZEC9|ETCB_YERPE -            188     1e-14   53.7   2.7   1   1   2.9e-17   2.8e-14   52.3   2.7     1    35    43    77    43    77 0.97 Putative Fe-S cluster
Fer4                 PF00037.22    24 sp|Q8ZEC9|ETCB_YERPE -            188   2.6e-11   42.6  25.5   2   3   6.6e-10   6.6e-07   28.6   6.1     2    23   111   132   110   133 0.94 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|Q8ZEC9|ETCB_YERPE -            188   2.6e-11   42.6  25.5   3   3   2.8e-08   2.8e-05   23.5   4.8     4    24   143   163   140   163 0.90 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|Q8ZEC9|ETCB_YERPE -            188   3.4e-11   43.2  27.1   1   3   6.1e-09     6e-06   26.4   4.4     4    55    48   132    47   133 0.90 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|Q8ZEC9|ETCB_YERPE -            188   3.4e-11   43.2  27.1   2   3   6.6e-10   6.6e-07   29.5  14.7     1    55   116   162   116   162 0.96 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|Q8ZEC9|ETCB_YERPE -            188   3.4e-11   43.2  27.1   3   3   0.00018      0.18   12.1   5.8     2    20   147   165   146   176 0.69 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|Q8ZEC9|ETCB_YERPE -            188   1.7e-09   37.2  23.2   2   3     2e-11     2e-08   33.9  11.9     3    52   111   158   109   158 0.84 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|Q8ZEC9|ETCB_YERPE -            188   1.7e-09   37.2  23.2   3   3   7.9e-06    0.0078   15.9   3.4     4    22   142   160   139   177 0.76 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|Q8ZEC9|ETCB_YERPE -            188   2.7e-08   34.0  19.3   1   2   1.5e-06    0.0015   18.8   9.7    17    52    96   131    47   131 0.64 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|Q8ZEC9|ETCB_YERPE -            188   2.7e-08   34.0  19.3   2   2   1.1e-06    0.0011   19.3   2.1     2    25   147   170   146   181 0.81 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|Q8ZEC9|ETCB_YERPE -            188   3.2e-07   29.9  28.2   1   2   4.1e-09   4.1e-06   26.4   6.0     1    24   109   132   109   132 0.96 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|Q8ZEC9|ETCB_YERPE -            188   3.2e-07   29.9  28.2   2   2     1e-05      0.01   15.6   5.8     7    24   145   162   141   162 0.93 4Fe-4S binding domain
Fer4_16              PF13484.1     67 sp|Q8ZEC9|ETCB_YERPE -            188   4.1e-07   30.6  15.8   1   2   1.5e-06    0.0014   19.2   2.4     1    20   116   135   116   142 0.86 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|Q8ZEC9|ETCB_YERPE -            188   4.1e-07   30.6  15.8   2   2   1.4e-06    0.0014   19.3   1.9     2    40   147   185   146   188 0.81 4Fe-4S double cluster binding domain
Fer4_2               PF12797.2     22 sp|Q8ZEC9|ETCB_YERPE -            188   1.4e-06   27.9  19.9   2   3   1.9e-08   1.9e-05   24.2   3.8     2    22   109   129   108   129 0.93 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|Q8ZEC9|ETCB_YERPE -            188   1.4e-06   27.9  19.9   3   3    0.0002      0.19   11.6   2.5     7    22   144   159   138   159 0.86 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|Q8ZEC9|ETCB_YERPE -            188     0.001   19.2  24.2   1   2   5.9e-05     0.058   13.7   3.8     2    16   115   129   114   130 0.90 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|Q8ZEC9|ETCB_YERPE -            188     0.001   19.2  24.2   2   2   7.1e-06    0.0071   16.6   3.4     1    17   144   160   144   160 0.92 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|Q8ZEC9|ETCB_YERPE -            188    0.0013   19.1   2.5   1   2   1.3e-06    0.0013   19.1   2.5    48    65   113   130    85   134 0.81 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|Q8ZEC9|ETCB_YERPE -            188    0.0018   18.2  13.8   1   2   0.00074      0.73    9.9  10.6     4    56    48   130    45   131 0.48 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|Q8ZEC9|ETCB_YERPE -            188    0.0018   18.2  13.8   2   2   1.8e-06    0.0018   18.2  13.8     3    56   115   160   113   161 0.76 4Fe-4S dicluster domain
Fer4_3               PF12798.2     15 sp|Q8ZEC9|ETCB_YERPE -            188    0.0084   16.6   5.8   1   2   8.4e-06    0.0084   16.6   5.8     1    15   117   131   117   131 0.98 4Fe-4S binding domain
Fer4_17              PF13534.1     61 sp|Q8ZEC9|ETCB_YERPE -            188      0.58   10.5  22.7   2   3   0.00016      0.15   12.3   1.9     1    19   116   134   116   144 0.79 4Fe-4S dicluster domain
Fer4_15              PF13459.1     65 sp|Q8ZEC9|ETCB_YERPE -            188      0.79   10.3  26.9   1   2   0.00011       0.1   13.1   5.6     2    19   111   128   110   132 0.94 4Fe-4S single cluster domain
NQR2_RnfD_RnfE       PF03116.10   314 sp|Q8ZED2|ETCD_YERPE -            351  6.9e-122  406.5  14.1   1   1  5.3e-126  7.8e-122  406.3  14.1     4   314     3   347     1   347 0.94 NQR2, RnfD, RnfE family
Rnf-Nqr              PF02508.9    190 sp|Q8ZED4|ETCE_YERPE -            233   2.4e-60  203.3   9.9   1   1   1.9e-64   2.8e-60  203.1   9.9     1   189     1   200     1   201 0.97 Rnf-Nqr subunit, membrane protein
FMN_bind             PF04205.9     81 sp|Q8ZED3|ETCG_YERPE -            209   6.1e-17   61.5   0.0   1   1   7.8e-21   1.2e-16   60.6   0.0     1    78   100   189   100   191 0.98 FMN-binding domain
Exonuc_VII_L         PF02601.10   319 sp|Q8ZCU2|EX7L_YERPE -            459   3.2e-88  295.9   1.2   1   1   1.6e-91   4.6e-88  295.4   1.2     1   319   126   442   126   442 0.94 Exonuclease VII, large subunit
tRNA_anti_2          PF13742.1     99 sp|Q8ZCU2|EX7L_YERPE -            459   2.7e-35  120.1   0.3   1   2   1.4e-37   4.2e-34  116.3   0.0     1    99     9   104     9   104 0.98 OB-fold nucleic acid binding domain
tRNA_anti-codon      PF01336.20    75 sp|Q8ZCU2|EX7L_YERPE -            459   3.6e-06   26.7   0.0   1   1   2.4e-09   7.1e-06   25.7   0.0     2    74    31   104    30   105 0.94 OB-fold nucleic acid binding domain
Exonuc_VII_S         PF02609.11    53 sp|Q8ZC47|EX7S_YERPE -             84   2.7e-21   75.0   2.6   1   1   2.1e-25   3.2e-21   74.8   2.6     1    53    15    67    15    67 0.99 Exonuclease VII small subunit
FBPase               PF00316.15   325 sp|Q0WBC9|F16PA_YERPE -            337  1.3e-135  451.3   0.0   1   1  2.1e-139  1.5e-135  451.1   0.0     2   323     3   329     2   331 0.97 Fructose-1-6-bisphosphatase
Inositol_P           PF00459.20   271 sp|Q0WBC9|F16PA_YERPE -            337     0.072   12.3   0.0   1   1   1.8e-05      0.13   11.5   0.0    44    97    64   119    43   120 0.82 Inositol monophosphatase family
FabA                 PF07977.8    138 sp|Q8ZG80|FABA_YERPE -            172   9.9e-50  167.6   0.0   1   1   7.8e-54   1.2e-49  167.3   0.0     1   137    29   158    29   159 0.97 FabA-like domain
ACP_syn_III_C        PF08541.5     90 sp|Q8ZFT7|FABH_YERPE -            316   5.5e-36  122.4   1.6   3   3   1.2e-38     3e-35  120.1   0.1     1    90   227   316   227   316 0.98 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
ACP_syn_III          PF08545.5     80 sp|Q8ZFT7|FABH_YERPE -            316     3e-31  106.8   0.5   1   1   2.4e-34   5.9e-31  105.9   0.5     1    80   106   183   106   183 0.99 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_N      PF00195.14   227 sp|Q8ZFT7|FABH_YERPE -            316   2.5e-06   26.9   1.3   1   1   1.9e-09   4.7e-06   25.9   1.3    97   225    47   168    22   170 0.82 Chalcone and stilbene synthases, N-terminal domain
HMG_CoA_synt_N       PF01154.12   174 sp|Q8ZFT7|FABH_YERPE -            316   1.3e-05   24.8   0.1   1   1     1e-08   2.5e-05   23.8   0.1     7   150     5   143     3   170 0.87 Hydroxymethylglutaryl-coenzyme A synthase N terminal
FAE1_CUT1_RppA       PF08392.7    290 sp|Q8ZFT7|FABH_YERPE -            316   0.00031   19.9   0.0   1   1     2e-07    0.0005   19.2   0.0    81   179    48   146    32   176 0.77 FAE1/Type III polyketide synthase-like protein
Thiolase_N           PF00108.18   264 sp|Q8ZFT7|FABH_YERPE -            316    0.0047   15.9   0.2   1   1   3.3e-06    0.0082   15.1   0.2    11   121    36   145    30   168 0.88 Thiolase, N-terminal domain
FabA                 PF07977.8    138 sp|Q8ZH57|FABZ_YERPE -            181   8.1e-43  145.2   0.0   1   1   2.6e-46   9.8e-43  144.9   0.0     1   137    17   141    17   142 0.97 FabA-like domain
PS-DH                PF14765.1    296 sp|Q8ZH57|FABZ_YERPE -            181    0.0026   16.9   0.0   1   1   8.8e-07    0.0032   16.6   0.0    36   129    56   150    32   173 0.69 Polyketide synthase dehydratase
4HBT_3               PF13622.1    255 sp|Q8ZH57|FABZ_YERPE -            181    0.0039   16.9   0.0   1   1   1.2e-06    0.0043   16.8   0.0    43   103   101   162    63   180 0.84 Thioesterase-like superfamily
MaoC_dehydratas      PF01575.14   123 sp|Q8ZH57|FABZ_YERPE -            181    0.0096   15.3   0.0   1   1   4.1e-06     0.015   14.6   0.0    74   113    90   129    52   137 0.68 MaoC like domain
Thiolase_N           PF00108.18   264 sp|Q8ZAM9|FADA_YERPE -            387   7.7e-89  297.1   0.9   1   1   2.1e-92     1e-88  296.7   0.9     1   264     1   254     1   254 0.97 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|Q8ZAM9|FADA_YERPE -            387   3.8e-49  165.2   0.1   2   2   7.7e-53   3.8e-49  165.2   0.1     2   123   262   386   261   386 0.97 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|Q8ZAM9|FADA_YERPE -            387     0.053   12.9   2.1   1   2   1.2e-05     0.061   12.8   0.2   168   208    83   123    78   131 0.93 Beta-ketoacyl synthase, N-terminal domain
ECH                  PF00378.15   245 sp|Q8ZAN0|FADB_YERPE -            729   1.5e-73  246.9   0.0   1   1     1e-76   3.7e-73  245.6   0.0     3   244    12   266    10   267 0.99 Enoyl-CoA hydratase/isomerase family
3HCDH_N              PF02737.13   180 sp|Q8ZAN0|FADB_YERPE -            729     1e-59  201.2   0.3   2   2   1.2e-62   4.4e-59  199.1   0.3     2   180   316   494   315   494 0.99 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH                PF00725.17    97 sp|Q8ZAN0|FADB_YERPE -            729   1.2e-32  112.1   4.2   2   3   3.7e-30   1.4e-26   92.7   0.5     1    97   496   592   496   592 0.97 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3HCDH                PF00725.17    97 sp|Q8ZAN0|FADB_YERPE -            729   1.2e-32  112.1   4.2   3   3   3.4e-07    0.0013   19.1   0.0     4    59   628   687   627   710 0.85 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|Q8ZAN0|FADB_YERPE -            729    0.0046   16.6   0.1   1   1   2.1e-06    0.0078   15.9   0.1     3   106   317   431   315   477 0.86 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
DUF1974              PF09317.6    284 sp|Q8ZBY6|FADE_YERPE -            815    6e-117  390.0   0.0   1   1  2.1e-120  7.9e-117  389.7   0.0     1   284   514   792   514   792 1.00 Domain of unknown function (DUF1974)
Acyl-CoA_dh_N        PF02771.11   113 sp|Q8ZBY6|FADE_YERPE -            815   9.3e-17   61.6   0.0   1   1   6.4e-20   2.4e-16   60.3   0.0    28   113   147   233   121   233 0.85 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_1        PF00441.19   150 sp|Q8ZBY6|FADE_YERPE -            815   1.5e-12   47.8   0.7   1   1   9.2e-16   3.4e-12   46.6   0.7     1   145   360   507   360   509 0.94 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_M        PF02770.14    52 sp|Q8ZBY6|FADE_YERPE -            815     4e-06   26.2   0.0   1   1   2.8e-09     1e-05   24.9   0.0     1    51   237   295   237   297 0.94 Acyl-CoA dehydrogenase, middle domain
Thiolase_N           PF00108.18   264 sp|Q8ZD46|FADI_YERPE -            436   9.5e-70  234.5   0.5   1   1   2.5e-73   1.2e-69  234.2   0.5     3   264    14   288    12   288 0.97 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|Q8ZD46|FADI_YERPE -            436   2.8e-37  126.8   0.6   2   2   1.8e-40   9.1e-37  125.2   0.1     2   122   296   434   295   435 0.98 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|Q8ZD46|FADI_YERPE -            436     3e-06   26.9   4.9   1   3   1.6e-09   7.9e-06   25.5   1.4   165   206    88   129    50   155 0.80 Beta-ketoacyl synthase, N-terminal domain
ECH                  PF00378.15   245 sp|Q8ZD45|FADJ_YERPE -            747   4.7e-59  199.4   0.1   1   1   1.6e-62   8.1e-59  198.7   0.1     6   236    21   261    18   267 0.86 Enoyl-CoA hydratase/isomerase family
3HCDH_N              PF02737.13   180 sp|Q8ZD45|FADJ_YERPE -            747   3.7e-56  189.6   0.1   1   1   1.2e-59   5.9e-56  188.9   0.1     1   179   317   496   317   497 0.98 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH                PF00725.17    97 sp|Q8ZD45|FADJ_YERPE -            747   8.4e-34  115.8   0.0   1   2   6.5e-29   3.2e-25   88.3   0.0     1    97   499   592   499   592 0.97 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3HCDH                PF00725.17    97 sp|Q8ZD45|FADJ_YERPE -            747   8.4e-34  115.8   0.0   2   2   5.1e-09   2.5e-05   24.5   0.0     1    84   643   729   643   731 0.93 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
ABC_tran             PF00005.22   137 sp|Q8ZCM2|FBPC_YERPE -            349   1.6e-33  115.8   0.0   1   1   4.5e-36   2.6e-33  115.1   0.0     1   136    19   163    19   164 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZCM2|FBPC_YERPE -            349   2.9e-09   37.3   0.1   1   1   1.6e-10   9.4e-08   32.3   0.1     2   298    32   195    32   201 0.90 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZCM2|FBPC_YERPE -            349   1.8e-06   27.3   0.0   1   2   0.00093      0.55    9.4   0.0    25    42    30    47     4    52 0.81 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|Q8ZCM2|FBPC_YERPE -            349   1.8e-06   27.3   0.0   2   2     1e-05    0.0061   15.8   0.0   110   209   101   207    90   214 0.70 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|Q8ZCM2|FBPC_YERPE -            349   0.00039   19.8   0.1   1   1   1.9e-06    0.0011   18.3   0.0    27    59    23    63    16    87 0.73 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZCM2|FBPC_YERPE -            349   0.00065   19.1   0.0   1   1   3.8e-06    0.0023   17.4   0.0    21    40    28    46    18    51 0.82 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZCM2|FBPC_YERPE -            349   0.00077   19.5   0.8   1   2   2.8e-05     0.016   15.1   0.0    25    46    30    50     8    78 0.78 AAA ATPase domain
MobB                 PF03205.9    140 sp|Q8ZCM2|FBPC_YERPE -            349    0.0017   18.0   0.1   1   1   1.3e-05    0.0078   15.9   0.1     3    21    32    50    30    61 0.89 Molybdopterin guanine dinucleotide synthesis protein B
AAA_17               PF13207.1    121 sp|Q8ZCM2|FBPC_YERPE -            349    0.0029   18.4   0.2   1   1   1.1e-05    0.0064   17.2   0.2     3    20    33    50    31    75 0.92 AAA domain
NACHT                PF05729.7    166 sp|Q8ZCM2|FBPC_YERPE -            349    0.0036   16.9   1.4   1   2   7.5e-05     0.045   13.4   0.1     3    21    32    50    30    52 0.89 NACHT domain
AAA_19               PF13245.1     76 sp|Q8ZCM2|FBPC_YERPE -            349    0.0052   16.5   0.1   1   1   8.7e-06    0.0052   16.5   0.1     9    35    28    53    20    88 0.81 Part of AAA domain
AAA_23               PF13476.1    202 sp|Q8ZCM2|FBPC_YERPE -            349    0.0057   17.0   0.0   1   1   1.5e-05    0.0089   16.3   0.0    22    39    32    49     4    51 0.82 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZCM2|FBPC_YERPE -            349    0.0059   16.4   0.8   1   1   9.7e-05     0.057   13.2   0.8     4    20    34    50    32   207 0.56 AAA domain
AAA_22               PF13401.1    131 sp|Q8ZCM2|FBPC_YERPE -            349     0.012   15.7   0.8   1   1   9.2e-05     0.055   13.6   0.1     7    24    32    49    29    62 0.89 AAA domain
AAA_10               PF12846.2    304 sp|Q8ZCM2|FBPC_YERPE -            349     0.012   15.0   0.5   1   2     9e-05     0.053   12.9   0.1     4    22    32    50    30    61 0.89 AAA-like domain
AAA_15               PF13175.1    415 sp|Q8ZCM2|FBPC_YERPE -            349     0.016   14.2   0.0   1   2    0.0012      0.73    8.8   0.0    25    49    32    56    10    72 0.78 AAA ATPase domain
DUF258               PF03193.11   161 sp|Q8ZCM2|FBPC_YERPE -            349     0.021   13.9   0.0   1   1     6e-05     0.036   13.2   0.0    36    62    30    56     3    78 0.78 Protein of unknown function, DUF258
AAA_18               PF13238.1    129 sp|Q8ZCM2|FBPC_YERPE -            349     0.034   14.4   0.1   1   1    0.0001     0.061   13.6   0.1     2    19    33    50    33    69 0.88 AAA domain
AAA                  PF00004.24   132 sp|Q8ZCM2|FBPC_YERPE -            349     0.045   13.9   0.1   1   1   0.00044      0.26   11.4   0.1     3    20    34    51    32   190 0.75 ATPase family associated with various cellular activities (AAA)
cobW                 PF02492.14   178 sp|Q8ZCM2|FBPC_YERPE -            349     0.045   13.1   0.1   1   1   0.00014     0.083   12.3   0.1     3    21    32    50    30    62 0.84 CobW/HypB/UreG, nucleotide-binding domain
SbcCD_C              PF13558.1     90 sp|Q8ZCM2|FBPC_YERPE -            349     0.054   13.4   0.2   1   1   0.00031      0.18   11.7   0.2    49    84   145   174   134   180 0.73 Putative exonuclease SbcCD, C subunit
Miro                 PF08477.8    119 sp|Q8ZCM2|FBPC_YERPE -            349     0.065   13.7   0.1   1   1   0.00024      0.14   12.6   0.0     2    26    32    61    31   100 0.73 Miro-like protein
AAA_28               PF13521.1    163 sp|Q8ZCM2|FBPC_YERPE -            349     0.093   12.6   0.5   1   1   0.00035      0.21   11.5   0.2     2    20    32    50    31    74 0.85 AAA domain
MMR_HSR1             PF01926.18   116 sp|Q8ZCM2|FBPC_YERPE -            349     0.094   12.6   0.1   1   1    0.0013      0.74    9.7   0.0     2    21    32    51    31   193 0.72 50S ribosome-binding GTPase
AAA_24               PF13479.1    213 sp|Q8ZCM2|FBPC_YERPE -            349      0.21   11.1   0.1   1   1   0.00069      0.41   10.1   0.1     5    21    31    47    29    53 0.89 AAA domain
FdhD-NarQ            PF02634.10   236 sp|Q8Z9X7|FDHD_YERPE -            274     6e-72  241.9   0.0   1   1   4.7e-76     7e-72  241.6   0.0     1   236    38   274    38   274 0.92 FdhD/NarQ family
FdhE                 PF04216.7    293 sp|Q8Z9Y0|FDHE_YERPE -            309  2.2e-112  375.5   0.3   1   1  1.5e-115  2.5e-112  375.3   0.3     5   293    21   306    11   306 0.98 Protein involved in formate dehydrogenase formation
Stc1                 PF12898.2     84 sp|Q8Z9Y0|FDHE_YERPE -            309     0.001   19.0   0.4   1   1   1.2e-06     0.002   18.1   0.4    35    81   212   260   203   263 0.85 Stc1 domain
FeoC                 PF09012.5     69 sp|Q7CFX5|FEOC_YERPE -             85     2e-18   65.8   0.1   1   1     9e-22   2.2e-18   65.7   0.1     1    69     3    77     3    77 0.93 FeoC like transcriptional regulator
TrmB                 PF01978.14    68 sp|Q7CFX5|FEOC_YERPE -             85   0.00024   20.7   0.0   1   1     1e-07   0.00025   20.6   0.0    19    56    13    50     9    81 0.90 Sugar-specific transcriptional regulator TrmB
HTH_24               PF13412.1     48 sp|Q7CFX5|FEOC_YERPE -             85    0.0084   15.4   0.1   1   1   5.2e-06     0.013   14.8   0.1    11    48    10    47     7    47 0.90 Winged helix-turn-helix DNA-binding
DUF2250              PF10007.4     93 sp|Q7CFX5|FEOC_YERPE -             85     0.029   14.2   0.0   1   1   1.2e-05     0.029   14.2   0.0    25    56    19    50     5    81 0.84 Uncharacterized protein conserved in archaea (DUF2250)
z-alpha              PF02295.12    66 sp|Q7CFX5|FEOC_YERPE -             85     0.042   13.6   0.0   1   2   4.6e-05      0.11   12.2   0.0    20    52    16    48     4    50 0.89 Adenosine deaminase z-alpha domain
Fe_dep_repress       PF01325.14    60 sp|Q7CFX5|FEOC_YERPE -             85     0.064   13.1   0.1   1   1   6.7e-05      0.16   11.8   0.0    22    50    16    44     9    48 0.91 Iron dependent repressor, N-terminal DNA binding domain
Iron_traffic         PF04362.9     88 sp|Q8ZHE7|FETP_YERPE -             90   1.2e-38  130.4   0.3   1   1   8.8e-43   1.3e-38  130.2   0.3     1    88     1    88     1    88 0.99 Bacterial Fe(2+) trafficking
Cation_efflux        PF01545.16   285 sp|Q8ZJL7|FIEF_YERPE -            300   2.5e-62  210.5   5.6   1   1   1.9e-66   2.8e-62  210.3   5.6     5   283    17   289    13   291 0.96 Cation efflux family
HTH_8                PF02954.14    42 sp|Q8ZAX8|FIS_YERPE  -             98   8.7e-15   53.9   0.4   1   1   3.5e-18   1.3e-14   53.4   0.4     2    42    55    95    54    95 0.98 Bacterial regulatory protein, Fis family
Phage_NinH           PF06322.6     64 sp|Q8ZAX8|FIS_YERPE  -             98    0.0081   15.7   0.0   1   1   3.8e-06     0.014   15.0   0.0    10    37    64    92    58    96 0.87 Phage NinH protein
HTH_30               PF13556.1     59 sp|Q8ZAX8|FIS_YERPE  -             98     0.061   12.9   0.1   2   2   3.8e-05      0.14   11.7   0.0    12    35    71    94    62    96 0.88 PucR C-terminal helix-turn-helix domain
WH2                  PF02205.15    30 sp|Q8ZAX8|FIS_YERPE  -             98      0.13   11.8   0.6   1   1     6e-05      0.22   11.1   0.6     5    22    76    94    74    94 0.97 WH2 motif
FlgH                 PF02107.11   180 sp|Q8ZHZ5|FLGH1_YERPE -            221   4.1e-64  215.4   0.0   1   1   3.2e-68   4.7e-64  215.2   0.0     4   180    42   220    39   220 0.97 Flagellar L-ring protein
FlgH                 PF02107.11   180 sp|Q8ZFB2|FLGH2_YERPE -            229   5.5e-69  231.3   0.7   1   1   4.6e-73   6.8e-69  231.0   0.7     6   180    43   228    38   228 0.94 Flagellar L-ring protein
FlgI                 PF02119.11   342 sp|Q8ZHZ4|FLGI1_YERPE -            370  2.1e-132  440.9  11.6   1   1  4.8e-136  2.3e-132  440.7  11.6     3   342    29   370    27   370 0.99 Flagellar P-ring protein
PBP_like             PF12727.2    193 sp|Q8ZHZ4|FLGI1_YERPE -            370     0.026   13.4   0.1   1   1   8.3e-06     0.041   12.8   0.1    92   143   224   284   124   292 0.84 PBP superfamily domain
Secretin_N           PF03958.12    82 sp|Q8ZHZ4|FLGI1_YERPE -            370      0.78    9.9   5.6   2   3   0.00019      0.93    9.7   0.5     9    59   201   270   197   273 0.95 Bacterial type II/III secretion system short domain
FlgI                 PF02119.11   342 sp|Q8ZFB1|FLGI2_YERPE -            369  1.4e-133  444.7  15.0   1   1  1.1e-137  1.6e-133  444.5  15.0     1   342    25   369    25   369 0.99 Flagellar P-ring protein
FliE                 PF02049.13    97 sp|Q8ZF85|FLIE_YERPE -            103   9.7e-27   92.8   2.0   1   1   7.3e-31   1.1e-26   92.6   2.0     6    97    11   103     4   103 0.94 Flagellar hook-basal body complex protein FliE
FliT                 PF05400.8     84 sp|Q8D0B5|FLIT_YERPE -            120   7.6e-18   64.7   1.9   2   2   5.1e-22   7.6e-18   64.7   1.9     1    84    21   106    21   106 0.98 Flagellar protein FliT
Formyl_trans_N       PF00551.14   181 sp|Q8ZJ80|FMT_YERPE  -            315   1.4e-50  171.4   0.0   1   1   2.7e-54     2e-50  170.8   0.0     2   178     6   181     5   184 0.98 Formyl transferase
Formyl_trans_C       PF02911.13   100 sp|Q8ZJ80|FMT_YERPE  -            315   2.3e-32  111.0   0.1   1   1   5.7e-36   4.2e-32  110.2   0.1     1    99   207   304   207   305 0.98 Formyl transferase, C-terminal domain
THF_DHG_CYH_C        PF02882.14   161 sp|Q7CJY7|FOLD_YERPE -            288   3.6e-67  224.4   0.0   1   1   7.9e-71   5.9e-67  223.7   0.0     1   159   124   281   124   283 0.99 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
THF_DHG_CYH          PF00763.18   117 sp|Q7CJY7|FOLD_YERPE -            288   1.3e-40  138.0   0.2   1   1   2.9e-44   2.2e-40  137.3   0.2     1   117     4   121     4   121 0.99 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
Fapy_DNA_glyco       PF01149.19   116 sp|Q8ZJP0|FPG_YERPE  -            269   2.2e-29  102.1   0.0   1   1   8.6e-33   3.2e-29  101.6   0.0     1   115     2   114     2   115 0.96 Formamidopyrimidine-DNA glycosylase N-terminal domain
H2TH                 PF06831.9     93 sp|Q8ZJP0|FPG_YERPE  -            269   8.2e-25   86.3   0.0   1   1   4.1e-28   1.5e-24   85.5   0.0     1    90   129   218   129   220 0.97 Formamidopyrimidine-DNA glycosylase H2TH domain
zf-FPG_IleRS         PF06827.9     30 sp|Q8ZJP0|FPG_YERPE  -            269   3.9e-10   39.1   6.2   1   1   1.9e-13   7.2e-10   38.2   6.2     1    29   241   269   241   269 0.98 Zinc finger found in FPG and IleRS
zf-dskA_traR         PF01258.12    36 sp|Q8ZJP0|FPG_YERPE  -            269     0.078   12.7   1.9   1   1   3.6e-05      0.13   12.0   1.9     3    32   237   269   235   269 0.87 Prokaryotic dksA/traR C4-type zinc finger
Fumarate_red_C       PF02300.12   129 sp|Q8ZIX7|FRDC_YERPE -            130   4.3e-56  188.3   4.2   1   1   9.7e-60   4.8e-56  188.1   4.2     1   128     2   129     2   130 0.99 Fumarate reductase subunit C
Sdh_cyt              PF01127.17   121 sp|Q8ZIX7|FRDC_YERPE -            130    0.0082   15.9   1.7   1   2   1.7e-06    0.0082   15.9   1.7    10    83    15    84     6    86 0.72 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
RHD3                 PF05879.7    743 sp|Q8ZIX7|FRDC_YERPE -            130      0.24    9.2   0.4   1   1   5.1e-05      0.25    9.1   0.4   660   684    55    79    26   113 0.64 Root hair defective 3 GTP-binding protein (RHD3)
Fumarate_red_D       PF02313.12   118 sp|Q8ZIX8|FRDD_YERPE -            118   1.7e-52  176.2   5.7   1   1   3.8e-56   1.9e-52  176.1   5.7     1   117     1   116     1   117 0.98 Fumarate reductase subunit D
Sdh_cyt              PF01127.17   121 sp|Q8ZIX8|FRDD_YERPE -            118      0.15   11.9   9.6   1   1   4.1e-05       0.2   11.4   9.6    30   119    24   109    22   117 0.69 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
DivIC                PF04977.10    80 sp|Q8ZBP5|FTSB_YERPE -            106   1.1e-29  101.6   0.0   1   1   9.1e-34   1.3e-29  101.4   0.0     1    79    11    89    11    90 0.98 Septum formation initiator
FtsK_SpoIIIE         PF01580.13   205 sp|Q8ZGC7|FTSK_YERPE -           1305   1.3e-70  237.0   0.0   1   1   1.3e-73   2.3e-70  236.2   0.0     2   205   923  1136   922  1136 0.99 FtsK/SpoIIIE family
DUF4117              PF13491.1    171 sp|Q8ZGC7|FTSK_YERPE -           1305   2.1e-42  144.4  15.4   1   1   1.7e-45   3.2e-42  143.8  15.4     2   171    20   191    19   191 0.95 Domain of unknown function (DUF4117)
Ftsk_gamma           PF09397.5     67 sp|Q8ZGC7|FTSK_YERPE -           1305   2.7e-29  100.6   0.0   1   1   3.2e-32     6e-29   99.5   0.0     2    65  1238  1301  1237  1303 0.97 Ftsk gamma domain
AAA_10               PF12846.2    304 sp|Q8ZGC7|FTSK_YERPE -           1305   1.3e-08   34.6   1.6   1   2   2.6e-06    0.0049   16.3   0.1     2    38   960  1000   959  1023 0.86 AAA-like domain
AAA_10               PF12846.2    304 sp|Q8ZGC7|FTSK_YERPE -           1305   1.3e-08   34.6   1.6   2   2   2.2e-06    0.0042   16.5   0.0   220   291  1089  1159  1074  1167 0.84 AAA-like domain
DUF87                PF01935.12   229 sp|Q8ZGC7|FTSK_YERPE -           1305   0.00018   21.4   0.1   1   1   2.4e-07   0.00045   20.1   0.1    11    60   949   999   941  1000 0.84 Domain of unknown function DUF87
T2SE                 PF00437.15   272 sp|Q8ZGC7|FTSK_YERPE -           1305     0.009   14.9   0.0   1   1   9.3e-06     0.017   14.0   0.0   130   162   961   997   946  1012 0.76 Type II/IV secretion system protein
TrwB_AAD_bind        PF10412.4    386 sp|Q8ZGC7|FTSK_YERPE -           1305    0.0095   14.5   0.1   1   2   2.7e-05      0.05   12.2   0.0    13    51   957   999   946  1005 0.74 Type IV secretion-system coupling protein DNA-binding domain
AAA_29               PF13555.1     62 sp|Q8ZGC7|FTSK_YERPE -           1305     0.085   12.4   0.0   1   1   0.00011       0.2   11.1   0.0    24    45   960   981   950   994 0.77 P-loop containing region of AAA domain
FtsL                 PF04999.8     97 sp|Q7CGA7|FTSL_YERPE -            105   3.6e-33  113.1   1.4   1   1   5.4e-37     4e-33  113.0   1.4     3    96    11   104     9   105 0.97 Cell division protein FtsL
TMEM154              PF15102.1    146 sp|Q7CGA7|FTSL_YERPE -            105    0.0065   16.1   1.2   1   1   1.2e-06     0.009   15.7   1.2    63   107    23    64    15   103 0.81 TMEM154 protein family
Cu-oxidase_3         PF07732.10   118 sp|Q7CGI0|FTSP_YERPE -            474     8e-24   83.6   0.0   1   1   4.8e-27   1.8e-23   82.5   0.0     2   116    53   167    52   169 0.94 Multicopper oxidase
Cu-oxidase_2         PF07731.9    138 sp|Q7CGI0|FTSP_YERPE -            474   6.8e-09   35.3   0.0   1   1   4.8e-12   1.8e-08   33.9   0.0    28   134   370   468   345   471 0.79 Multicopper oxidase
Cu-oxidase           PF00394.17   159 sp|Q7CGI0|FTSP_YERPE -            474   5.2e-05   23.2   0.0   2   2   1.5e-07   0.00056   19.8   0.0    69   126   229   288   198   302 0.83 Multicopper oxidase
TAT_signal           PF10518.4     26 sp|Q7CGI0|FTSP_YERPE -            474     0.035   14.1   1.5   1   1   3.1e-05      0.12   12.4   1.5     1    21     2    22     2    27 0.88 TAT (twin-arginine translocation) pathway signal sequence
FtsQ                 PF03799.10   117 sp|Q7CGB1|FTSQ_YERPE -            275   2.9e-32  111.2   0.2   1   1   6.5e-36   4.8e-32  110.5   0.2     1   117   129   244   129   244 0.96 Cell division protein FtsQ
POTRA_1              PF08478.5     69 sp|Q7CGB1|FTSQ_YERPE -            275   2.7e-22   78.5   0.1   1   1   5.6e-26   4.2e-22   77.9   0.1     1    69    56   126    56   126 0.98 POTRA domain, FtsQ-type
Lyase_1              PF00206.15   312 sp|Q8ZEB6|FUMC_YERPE -            465  2.8e-118  394.6   0.1   1   1  5.5e-122  4.1e-118  394.1   0.1     1   312    12   342    12   342 0.98 Lyase
FumaraseC_C          PF10415.4     55 sp|Q8ZEB6|FUMC_YERPE -            465   3.3e-26   91.0   0.6   2   2   1.7e-29   1.3e-25   89.2   0.2     1    54   408   461   408   462 0.98 Fumarase C C-terminus
FUR                  PF01475.14   120 sp|P33086|FUR_YERPE  -            148   6.1e-47  158.4   0.3   1   1   1.9e-50   7.2e-47  158.2   0.3     2   120    11   130    10   130 0.99 Ferric uptake regulator family
DUF4182              PF13790.1     38 sp|P33086|FUR_YERPE  -            148    0.0046   16.7   3.2   2   2   4.4e-05      0.16   11.7   0.5    23    37   128   142   123   143 0.83 Domain of unknown function (DUF4182)
HTH_12               PF08461.5     66 sp|P33086|FUR_YERPE  -            148     0.039   13.6   0.0   1   1   1.8e-05     0.068   12.9   0.0     2    55    21    75    20    85 0.82 Ribonuclease R winged-helix domain
PadR                 PF03551.9     75 sp|P33086|FUR_YERPE  -            148     0.051   13.3   0.0   1   1   3.3e-05      0.12   12.1   0.0    22    68    46    85    22    89 0.79 Transcriptional regulator PadR-like family
TonB_dep_Rec         PF00593.19   277 sp|P46359|FYUA_YERPE -            673   2.6e-26   93.1  13.7   2   2   5.3e-30   2.6e-26   93.1  13.7     3   274   434   668   432   671 0.87 TonB dependent receptor
Plug                 PF07715.10   108 sp|P46359|FYUA_YERPE -            673   4.7e-15   55.8   1.8   1   1     2e-18   9.8e-15   54.8   1.8     6   108    48   149    42   149 0.92 TonB-dependent Receptor Plug Domain
PGI                  PF00342.14   486 sp|Q8ZAS2|G6PI_YERPE -            548  7.1e-234  776.6   0.0   1   1  5.5e-238  8.2e-234  776.4   0.0     1   486    52   541    52   541 0.99 Phosphoglucose isomerase
GalKase_gal_bdg      PF10509.4     52 sp|Q8ZGY3|GAL1_YERPE -            383   4.5e-24   83.4   0.0   1   1   1.7e-27   8.3e-24   82.6   0.0     2    52     9    59     8    59 0.96 Galactokinase galactose-binding signature
GHMP_kinases_N       PF00288.21    67 sp|Q8ZGY3|GAL1_YERPE -            383   1.3e-14   53.9   0.5   1   1   5.7e-18   2.8e-14   52.9   0.5     2    66   115   181   114   182 0.93 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|Q8ZGY3|GAL1_YERPE -            383   8.7e-11   41.8   0.0   2   2   9.4e-14   4.7e-10   39.5   0.0     2    84   279   361   278   362 0.90 GHMP kinases C terminal
Epimerase            PF01370.16   236 sp|Q9F7D4|GALE_YERPE -            338   2.8e-55  187.3   0.0   1   1   2.3e-58   3.4e-55  187.0   0.0     1   236     3   262     3   262 0.96 NAD dependent epimerase/dehydratase family
Epimerase_Csub       PF13950.1     62 sp|Q9F7D4|GALE_YERPE -            338     2e-26   91.6   1.2   1   1   2.3e-29   3.4e-26   90.9   1.2     1    62   275   336   275   336 0.99 UDP-glucose 4-epimerase C-term subunit
Polysacc_synt_2      PF02719.10   294 sp|Q9F7D4|GALE_YERPE -            338   1.6e-17   63.3   0.0   1   1   1.1e-19   1.7e-16   60.0   0.0     1   173     3   182     3   187 0.80 Polysaccharide biosynthesis protein
3Beta_HSD            PF01073.14   280 sp|Q9F7D4|GALE_YERPE -            338   4.9e-17   61.5   0.0   1   1   6.5e-20   9.6e-17   60.5   0.0     1   157     4   160     4   257 0.81 3-beta hydroxysteroid dehydrogenase/isomerase family
adh_short            PF00106.20   167 sp|Q9F7D4|GALE_YERPE -            338   3.8e-12   46.4   0.1   1   1   5.6e-15   8.3e-12   45.3   0.0     3   148     3   136     1   139 0.83 short chain dehydrogenase
RmlD_sub_bind        PF04321.12   287 sp|Q9F7D4|GALE_YERPE -            338   5.6e-12   45.1   0.0   1   1   6.7e-15   9.9e-12   44.3   0.0     1   139     1   163     1   185 0.91 RmlD substrate binding domain
KR                   PF08659.5    181 sp|Q9F7D4|GALE_YERPE -            338   6.2e-09   35.7   0.0   1   1   8.3e-12   1.2e-08   34.7   0.0     3   150     3   137     2   139 0.84 KR domain
NAD_binding_4        PF07993.7    249 sp|Q9F7D4|GALE_YERPE -            338   4.4e-08   32.3   0.0   1   1   1.2e-10   1.8e-07   30.3   0.0     1   200     5   182     5   219 0.79 Male sterility protein
NAD_binding_10       PF13460.1    183 sp|Q9F7D4|GALE_YERPE -            338     9e-06   25.8   0.0   1   1   1.9e-08   2.8e-05   24.1   0.0     1   133     3   162     3   178 0.73 NADH(P)-binding
NmrA                 PF05368.8    233 sp|Q9F7D4|GALE_YERPE -            338   0.00048   19.4   0.0   1   2   7.2e-06     0.011   15.0   0.0     1   106     3   127     3   142 0.76 NmrA-like family
GTP_cyclohydroI      PF01227.17   179 sp|Q8ZG15|GCH1_YERPE -            220   4.2e-64  215.1   0.3   1   1   6.8e-68     5e-64  214.8   0.3     1   178    38   216    38   217 0.97 GTP cyclohydrolase I
QueF                 PF14489.1     81 sp|Q8ZG15|GCH1_YERPE -            220     0.025   14.5   0.0   1   1     6e-06     0.045   13.7   0.0     5    57   119   171   117   179 0.88 QueF-like protein
GCV_H                PF01597.14   122 sp|Q8ZHI7|GCSH_YERPE -            128   9.4e-46  154.4   0.0   1   1   2.1e-49     1e-45  154.3   0.0     1   120     8   127     8   128 0.98 Glycine cleavage H-protein
RnfC_N               PF13375.1    101 sp|Q8ZHI7|GCSH_YERPE -            128    0.0088   15.7   0.1   1   1   2.8e-06     0.014   15.1   0.1    47    91    47    92    42    95 0.82 RnfC Barrel sandwich hybrid domain
Biotin_lipoyl        PF00364.17    74 sp|Q8ZHI7|GCSH_YERPE -            128     0.012   15.2   0.1   1   1     5e-06     0.025   14.2   0.1    23    60    47    84    40    88 0.92 Biotin-requiring enzyme
GDC-P                PF02347.11   429 sp|Q8ZHI8|GCSP_YERPE -            959  7.8e-189  627.7   1.9   1   3  1.3e-178  4.9e-175  582.3   0.1     1   429    16   440    16   440 0.98 Glycine cleavage system P-protein
GDC-P                PF02347.11   429 sp|Q8ZHI8|GCSP_YERPE -            959  7.8e-189  627.7   1.9   2   3   1.1e-13   4.2e-10   38.9   0.1    44   288   480   739   449   753 0.82 Glycine cleavage system P-protein
Beta_elim_lyase      PF01212.16   290 sp|Q8ZHI8|GCSP_YERPE -            959   3.7e-07   29.5   0.1   1   1   2.1e-10   7.7e-07   28.5   0.1    28   166   546   683   540   716 0.75 Beta-eliminating lyase
Aminotran_5          PF00266.14   371 sp|Q8ZHI8|GCSP_YERPE -            959   0.00054   18.8   0.7   2   2   5.1e-07    0.0019   17.0   0.1    84   207   589   715   575   747 0.81 Aminotransferase class-V
Pyridoxal_deC        PF00282.14   373 sp|Q8ZHI8|GCSP_YERPE -            959      0.05   12.0   0.1   1   2   0.00023      0.85    7.9   0.0   119   232   579   683   545   687 0.77 Pyridoxal-dependent decarboxylase conserved domain
GCV_T                PF01571.16   211 sp|Q8ZHI6|GCST_YERPE -            365   8.2e-69  231.1   0.4   1   1   3.5e-72   1.3e-68  230.5   0.4     1   211    46   254    46   254 0.92 Aminomethyltransferase folate-binding domain
GCV_T_C              PF08669.6     95 sp|Q8ZHI6|GCST_YERPE -            365   1.4e-19   69.8   0.1   1   1   8.6e-23   3.2e-19   68.7   0.1     2    94   263   353   262   354 0.92 Glycine cleavage T-protein C-terminal barrel domain
POPLD                PF08170.7     92 sp|Q8ZHI6|GCST_YERPE -            365    0.0082   15.9   0.0   1   1   4.2e-06     0.015   15.0   0.0     2    43   195   236   194   245 0.91 POPLD (NUC188) domain
2-Hacid_dh_C         PF02826.14   178 sp|Q0W9V5|GHRB_YERPE -            326   8.4e-62  207.4   0.0   1   1   4.1e-65   1.5e-61  206.6   0.0     1   178   108   287   108   287 0.97 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2-Hacid_dh           PF00389.25   133 sp|Q0W9V5|GHRB_YERPE -            326   2.5e-30  104.6   0.0   1   1   7.7e-34   2.9e-30  104.4   0.0     1   133     5   319     5   319 0.97 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NAD_binding_2        PF03446.10   163 sp|Q0W9V5|GHRB_YERPE -            326   4.4e-06   26.6   0.1   2   2   2.2e-08   8.1e-05   22.5   0.0     2   115   146   257   145   262 0.85 NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored        PF03807.12    96 sp|Q0W9V5|GHRB_YERPE -            326    0.0081   16.5   0.0   1   1   5.2e-06     0.019   15.3   0.0     1    71   147   210   147   233 0.76 NADP oxidoreductase coenzyme F420-dependent
Glyco_transf_5       PF08323.6    245 sp|Q8ZA78|GLGA_YERPE -            476   3.1e-71  239.7   0.0   1   2   2.3e-74   8.5e-71  238.2   0.0     1   244     2   233     2   234 0.91 Starch synthase catalytic domain
Glycos_transf_1      PF00534.15   172 sp|Q8ZA78|GLGA_YERPE -            476   1.1e-17   63.9   0.0   1   1   4.8e-21   1.8e-17   63.3   0.0    11   165   288   448   284   454 0.94 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|Q8ZA78|GLGA_YERPE -            476   1.3e-09   38.4   5.6   1   2   3.4e-13   1.3e-09   38.4   5.6     1   145    17   220    17   225 0.58 Glycosyl transferase 4-like domain
Glyco_trans_1_4      PF13692.1    135 sp|Q8ZA78|GLGA_YERPE -            476   3.3e-05   24.0   0.1   1   1   1.9e-08     7e-05   23.0   0.1     3   133   293   439   291   440 0.70 Glycosyl transferases group 1
CBM_48               PF02922.13    85 sp|Q8ZA75|GLGB_YERPE -            727   6.5e-28   96.6   0.0   2   2   2.6e-28   9.8e-25   86.4   0.0     2    85   125   207   124   207 0.92 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase_C      PF02806.13    96 sp|Q8ZA75|GLGB_YERPE -            727   1.2e-20   73.4   0.0   1   1   7.6e-24   2.8e-20   72.2   0.0     1    91   628   723   628   726 0.88 Alpha amylase, C-terminal all-beta domain
Alpha-amylase        PF00128.19   316 sp|Q8ZA75|GLGB_YERPE -            727   1.3e-17   64.2   0.0   1   1   1.4e-17   5.1e-14   52.3   0.0    10   173   273   410   266   462 0.79 Alpha amylase, catalytic domain
Glyco_hydro_70       PF02324.11   809 sp|Q8ZA75|GLGB_YERPE -            727     0.035   11.8   0.0   1   1   1.5e-05     0.054   11.2   0.0   640   670   309   339   302   348 0.89 Glycosyl hydrolase family 70
NTP_transferase      PF00483.18   248 sp|Q8ZA77|GLGC_YERPE -            476   7.8e-66  221.8   0.0   1   1   1.3e-69   9.3e-66  221.6   0.0     2   246    22   291    21   293 0.96 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|Q8ZA77|GLGC_YERPE -            476   3.3e-08   33.7   0.0   1   1   7.4e-12   5.5e-08   33.0   0.0     1   121    22   166    22   185 0.75 MobA-like NTP transferase domain
CBM_48               PF02922.13    85 sp|Q8ZA76|GLGX_YERPE -            662   2.2e-18   66.0   0.0   1   1   5.4e-22     4e-18   65.2   0.0     1    83    11    95    11    97 0.89 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase        PF00128.19   316 sp|Q8ZA76|GLGX_YERPE -            662   2.8e-11   43.3   0.0   1   1   2.4e-12   1.8e-08   34.1   0.0    11   312   186   524   183   529 0.68 Alpha amylase, catalytic domain
Glucokinase          PF02685.11   316 sp|P58619|GLK_YERPE  -            323  3.8e-126  420.1   0.0   1   1  5.9e-130  4.3e-126  419.9   0.0     1   315     6   315     6   316 0.99 Glucokinase
PaaX_C               PF08223.6    172 sp|P58619|GLK_YERPE  -            323      0.01   15.5   0.0   1   1   2.2e-06     0.016   14.8   0.0   130   169   195   234   169   236 0.90 PaaX-like protein C-terminal domain
PGM_PMM_I            PF02878.11   138 sp|Q8ZBB8|GLMM_YERPE -            446   6.8e-46  155.1   0.0   1   1     4e-49   1.5e-45  154.0   0.0     1   133     4   135     4   138 0.98 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_III          PF02880.11   113 sp|Q8ZBB8|GLMM_YERPE -            446   1.4e-30  105.6   0.1   1   1   6.9e-34   2.6e-30  104.7   0.1     1   109   258   365   258   369 0.93 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_II           PF02879.11   104 sp|Q8ZBB8|GLMM_YERPE -            446   8.1e-21   74.3   0.0   1   1   5.3e-24     2e-20   73.0   0.0     2   103   157   253   156   254 0.92 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_IV           PF00408.15    73 sp|Q8ZBB8|GLMM_YERPE -            446   2.9e-16   59.2   0.6   1   1   2.7e-19   9.9e-16   57.5   0.6     1    73   373   443   373   443 0.96 Phosphoglucomutase/phosphomannomutase, C-terminal domain
Hexapep              PF00132.19    36 sp|Q8Z9S7|GLMU_YERPE -            456   1.6e-29  100.1  14.2   1   5   1.5e-08   3.1e-05   23.2   2.3     5    35   269   299   266   300 0.92 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8Z9S7|GLMU_YERPE -            456   1.6e-29  100.1  14.2   2   5   5.1e-05      0.11   12.0   0.0    16    34   297   315   296   317 0.88 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8Z9S7|GLMU_YERPE -            456   1.6e-29  100.1  14.2   3   5   4.4e-08   9.4e-05   21.7   0.0     2    36   318   352   317   352 0.92 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8Z9S7|GLMU_YERPE -            456   1.6e-29  100.1  14.2   4   5   4.3e-07   0.00092   18.6   0.2     2    32   353   382   352   385 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8Z9S7|GLMU_YERPE -            456   1.6e-29  100.1  14.2   5   5   2.3e-11   4.9e-08   32.1   0.5     2    36   395   429   394   429 0.96 Bacterial transferase hexapeptide (six repeats)
NTP_transf_3         PF12804.2    160 sp|Q8Z9S7|GLMU_YERPE -            456   1.9e-22   80.0   0.2   1   1   1.5e-25   3.1e-22   79.3   0.2     1   111     8   121     8   168 0.92 MobA-like NTP transferase domain
NTP_transferase      PF00483.18   248 sp|Q8Z9S7|GLMU_YERPE -            456   6.2e-13   48.6   0.0   1   1   4.5e-16   9.5e-13   48.0   0.0     3   217     9   211     7   219 0.86 Nucleotidyl transferase
Hexapep_2            PF14602.1     34 sp|Q8Z9S7|GLMU_YERPE -            456   2.1e-08   33.5  16.9   1   5   0.00011      0.23   11.0   1.8    10    32   274   298   269   298 0.87 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|Q8Z9S7|GLMU_YERPE -            456   2.1e-08   33.5  16.9   5   5   6.3e-08   0.00013   21.4   0.2     2    34   395   429   394   429 0.92 Hexapeptide repeat of succinyl-transferase
IspD                 PF01128.14   221 sp|Q8Z9S7|GLMU_YERPE -            456   1.2e-06   28.2   0.0   1   1   1.1e-09   2.3e-06   27.3   0.0     1    43     6    48     6   132 0.81 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CTP_transf_3         PF02348.14   217 sp|Q8Z9S7|GLMU_YERPE -            456   0.00092   18.8   0.0   1   2   7.9e-06     0.017   14.7   0.0    16    39    25    48    10    54 0.91 Cytidylyltransferase
CofC                 PF01983.11   217 sp|Q8Z9S7|GLMU_YERPE -            456     0.097   11.6   0.0   1   1   8.7e-05      0.18   10.7   0.0    31   112    33   120    17   126 0.79 Guanylyl transferase CofC like
GlnD_UR_UTase        PF08335.6    142 sp|Q8ZH68|GLND_YERPE -            893   2.4e-40  137.6   0.6   1   1   1.1e-43   2.4e-40  137.6   0.6     1   142   194   333   194   333 0.98 GlnD PII-uridylyltransferase
ACT                  PF01842.20    66 sp|Q8ZH68|GLND_YERPE -            893     7e-18   63.7   0.1   1   2   4.7e-09     1e-05   24.9   0.0     1    55   710   765   710   768 0.88 ACT domain
ACT                  PF01842.20    66 sp|Q8ZH68|GLND_YERPE -            893     7e-18   63.7   0.1   2   2   1.2e-12   2.6e-09   36.3   0.0     1    61   818   876   818   881 0.87 ACT domain
HD                   PF01966.17   122 sp|Q8ZH68|GLND_YERPE -            893   4.1e-14   52.6   0.2   1   1   7.3e-17   1.5e-13   50.7   0.1     1   121   470   603   470   604 0.89 HD domain
NTP_transf_2         PF01909.18    93 sp|Q8ZH68|GLND_YERPE -            893   9.2e-10   38.7   0.0   1   1   1.2e-12   2.5e-09   37.3   0.0     1    90    70   168    70   171 0.80 Nucleotidyltransferase domain
DUF294               PF03445.8    138 sp|Q8ZH68|GLND_YERPE -            893   0.00033   20.2   0.0   1   1   4.4e-07   0.00092   18.8   0.0     3    89    45   128    43   141 0.86 Putative nucleotidyltransferase DUF294
ACT_4                PF13291.1     80 sp|Q8ZH68|GLND_YERPE -            893      0.04   14.2   0.0   2   2   0.00025      0.53   10.6   0.0     6    41   817   852   812   872 0.84 ACT domain
Metal_resist         PF13801.1    125 sp|Q8ZH68|GLND_YERPE -            893     0.092   12.7   5.5   1   2   4.2e-05     0.088   12.7   1.0    52    93   625   666   618   672 0.87 Heavy-metal resistance
GlnE                 PF03710.10   248 sp|Q8ZI61|GLNE_YERPE -            951  5.6e-183  605.5   0.2   1   2   8.1e-92     6e-88  294.2   0.0     5   246    33   275    30   277 0.98 Glutamate-ammonia ligase adenylyltransferase
GlnE                 PF03710.10   248 sp|Q8ZI61|GLNE_YERPE -            951  5.6e-183  605.5   0.2   2   2   2.4e-96   1.8e-92  309.0   0.1     2   247   553   805   552   806 0.98 Glutamate-ammonia ligase adenylyltransferase
GlnD_UR_UTase        PF08335.6    142 sp|Q8ZI61|GLNE_YERPE -            951   2.8e-51  173.0   8.9   2   3   2.3e-45   1.7e-41  141.3   0.7     1   142   297   436   297   436 0.99 GlnD PII-uridylyltransferase
GlnD_UR_UTase        PF08335.6    142 sp|Q8ZI61|GLNE_YERPE -            951   2.8e-51  173.0   8.9   3   3   6.8e-13     5e-09   36.1   0.3     1   112   825   939   819   949 0.80 GlnD PII-uridylyltransferase
Lactamase_B          PF00753.22   194 sp|Q0WHW5|GLO2_YERPE -            251   2.5e-28   99.0   0.6   1   1   6.6e-32   3.2e-28   98.6   0.6     3   194     9   165     7   165 0.83 Metallo-beta-lactamase superfamily
Lactamase_B_2        PF12706.2    194 sp|Q0WHW5|GLO2_YERPE -            251   4.1e-07   29.7   0.4   1   1   1.1e-10   5.4e-07   29.3   0.4     3    71    25    85    23   195 0.70 Beta-lactamase superfamily domain
Lactamase_B_3        PF13483.1    163 sp|Q0WHW5|GLO2_YERPE -            251     0.029   14.0   0.1   1   1     1e-05     0.051   13.2   0.1    10    75    15    99    11   126 0.67 Beta-lactamase superfamily domain
FAD_binding_2        PF00890.19   417 sp|Q8ZAH6|GLPB_YERPE -            424   2.9e-62  210.8   0.0   1   1   2.2e-65   3.3e-62  210.6   0.0     1   417     4   404     4   404 0.94 FAD binding domain
DAO                  PF01266.19   358 sp|Q8ZAH6|GLPB_YERPE -            424   6.3e-11   41.7   0.0   1   2   6.7e-11   9.9e-08   31.2   0.1     1   130     4   122     4   128 0.85 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZAH6|GLPB_YERPE -            424   6.3e-11   41.7   0.0   2   2   0.00057      0.84    8.4   0.0   148   204   262   321   260   358 0.89 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|Q8ZAH6|GLPB_YERPE -            424   0.00033   20.6   0.1   1   1   1.2e-06    0.0018   18.2   1.1     1    30     4    33     4    51 0.82 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_3        PF01494.14   356 sp|Q8ZAH6|GLPB_YERPE -            424   0.00088   18.4   0.2   1   1   8.9e-07    0.0013   17.8   0.2     2    33     3    34     2    45 0.88 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|Q8ZAH6|GLPB_YERPE -            424    0.0012   18.8   1.1   1   1   2.1e-06    0.0031   17.4   1.1     1    25     7    31     7    40 0.90 NAD(P)-binding Rossmann-like domain
GIDA                 PF01134.17   392 sp|Q8ZAH6|GLPB_YERPE -            424    0.0026   16.6   0.1   1   2   8.2e-06     0.012   14.4   0.2     1    28     4    31     4    67 0.84 Glucose inhibited division protein A
HI0933_like          PF03486.9    409 sp|Q8ZAH6|GLPB_YERPE -            424    0.0049   15.3   0.5   1   1   5.5e-06    0.0082   14.6   0.5     1    33     3    35     3    39 0.89 HI0933-like protein
FAD_oxidored         PF12831.2    428 sp|Q8ZAH6|GLPB_YERPE -            424     0.032   13.2   0.9   1   1   3.6e-05     0.053   12.5   0.9     1    30     4    33     4    36 0.93 FAD dependent oxidoreductase
Lycopene_cycl        PF05834.7    374 sp|Q8ZAH6|GLPB_YERPE -            424     0.045   12.6   0.3   1   1   4.8e-05     0.071   12.0   0.3     1    27     4    30     4    41 0.81 Lycopene cyclase protein
Thi4                 PF01946.12   230 sp|Q8ZAH6|GLPB_YERPE -            424      0.12   11.4   0.2   1   1   0.00013       0.2   10.7   0.2    17    46     2    31     1    38 0.89 Thi4 family
Rhodanese            PF00581.15   113 sp|Q8ZJI3|GLPE_YERPE -            109   1.6e-16   60.6   0.0   1   1   2.6e-20   1.9e-16   60.4   0.0     9   112    13    98     5    99 0.88 Rhodanese-like domain
Reprolysin_4         PF13583.1    206 sp|Q8ZJI3|GLPE_YERPE -            109     0.087   12.3   0.1   1   1   1.3e-05     0.095   12.2   0.1   142   182    31    71     7    83 0.88 Metallo-peptidase family M12B Reprolysin-like
DUF3582              PF12122.3    101 sp|Q7CFX8|GLPG_YERPE -            278   1.4e-35  121.2   0.1   1   1   2.7e-39     2e-35  120.7   0.1     1   101     1   100     1   100 0.99 Protein of unknown function (DUF3582)
Rhomboid             PF01694.17   146 sp|Q7CFX8|GLPG_YERPE -            278     7e-28   97.4  16.0   2   2   9.5e-32     7e-28   97.4  16.0     3   143   132   271   130   274 0.84 Rhomboid family
Glutaminase          PF04960.10   286 sp|Q8ZHF1|GLSA1_YERPE -            308  3.8e-123  410.0   0.0   1   1  2.9e-127  4.3e-123  409.8   0.0     1   286    24   308    24   308 1.00 Glutaminase
Glutaminase          PF04960.10   286 sp|Q9ZC49|GLSA2_YERPE -            340  2.1e-106  355.1   0.0   1   1  3.2e-110  2.4e-106  354.9   0.0     1   286    47   331    47   331 0.99 Glutaminase
AvrPtoB-E3_ubiq      PF09046.5    124 sp|Q9ZC49|GLSA2_YERPE -            340     0.046   13.7   0.0   1   1     1e-05     0.076   13.0   0.0    68   122   206   260   191   262 0.86 AvrPtoB E3 ubiquitin ligase
tRNA-synt_1c         PF00749.16   314 sp|Q8ZBL1|GLUQ_YERPE -            321   4.2e-47  160.3   0.0   1   2   1.8e-30   2.7e-26   91.9   0.0     5   106    25   126    23   130 0.98 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c         PF00749.16   314 sp|Q8ZBL1|GLUQ_YERPE -            321   4.2e-47  160.3   0.0   2   2   1.1e-22   1.6e-18   66.4   0.0   144   248   145   249   132   254 0.91 tRNA synthetases class I (E and Q), catalytic domain
SHMT                 PF00464.14   399 sp|Q8ZCR1|GLYA_YERPE -            417  5.1e-185  614.5   0.1   1   1  1.2e-188  5.9e-185  614.3   0.1     1   399     8   386     8   386 0.99 Serine hydroxymethyltransferase
Aminotran_1_2        PF00155.16   363 sp|Q8ZCR1|GLYA_YERPE -            417   1.7e-07   30.5   0.0   1   1   4.9e-11   2.4e-07   30.0   0.0    57   339    86   351    33   379 0.67 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|Q8ZCR1|GLYA_YERPE -            417     1e-05   24.8   0.0   1   1     4e-09     2e-05   23.9   0.0    21   136    61   178    47   234 0.77 Beta-eliminating lyase
SIS_2                PF13580.1    138 sp|Q8ZBY7|GMHA_YERPE -            193   1.1e-31  109.3   0.1   1   1   3.4e-35   1.7e-31  108.7   0.1    15   138    24   146     7   146 0.93 SIS domain
SIS                  PF01380.17   131 sp|Q8ZBY7|GMHA_YERPE -            193   9.1e-08   31.7   0.0   1   1   3.1e-11   1.5e-07   31.0   0.0    49   104   107   162    86   178 0.87 SIS domain
Antibiotic_NAT       PF02522.9    229 sp|Q8ZBY7|GMHA_YERPE -            193     0.068   12.3   0.0   1   1   1.7e-05     0.082   12.1   0.0   127   166    41    80    18   129 0.77 Aminoglycoside 3-N-acetyltransferase
Hydrolase_like       PF13242.1     75 sp|Q8ZH37|GMHBB_YERPE -            188   1.8e-14   53.1   0.0   1   1   1.4e-17   3.1e-14   52.4   0.0     2    75   109   179   108   179 0.91 HAD-hyrolase-like
HAD_2                PF13419.1    176 sp|Q8ZH37|GMHBB_YERPE -            188   1.7e-08   34.9   0.0   1   1   7.8e-10   1.7e-06   28.4   0.0    73   174    26   153    13   155 0.81 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|Q8ZH37|GMHBB_YERPE -            188     6e-08   33.3   0.0   1   1   4.5e-11   9.5e-08   32.7   0.0   127   215    30   148     5   148 0.82 haloacid dehalogenase-like hydrolase
PNK3P                PF08645.6    159 sp|Q8ZH37|GMHBB_YERPE -            188   7.8e-07   28.6   0.0   1   1   4.5e-10   9.6e-07   28.3   0.0    22   127    24   137     7   172 0.82 Polynucleotide kinase 3 phosphatase
Hydrolase_6          PF13344.1    101 sp|Q8ZH37|GMHBB_YERPE -            188    0.0011   18.7   0.0   1   1     1e-06    0.0022   17.8   0.0     2    48     9    64     8    76 0.87 Haloacid dehalogenase-like hydrolase
DUF1330              PF07045.6     65 sp|Q8ZH37|GMHBB_YERPE -            188     0.011   15.6   0.0   1   1   9.5e-06      0.02   14.7   0.0    13    52   144   182   139   186 0.81 Protein of unknown function (DUF1330)
CBS                  PF00571.23    57 sp|Q8ZH37|GMHBB_YERPE -            188     0.043   13.6   0.0   1   1   4.7e-05       0.1   12.4   0.0    18    52    35    69    33    71 0.90 CBS domain
UPF0052              PF01933.13   301 sp|P58589|GNGF_YERPE -            307   3.7e-82  276.0   0.1   1   1   2.8e-86   4.2e-82  275.8   0.1     1   299    12   300    12   302 0.97 Uncharacterised protein family UPF0052
NAD_Gly3P_dh_C       PF07479.9    149 sp|Q8ZJM6|GPDA_YERPE -            339   6.5e-53  178.4   0.6   1   1   1.3e-55   9.8e-53  177.8   0.6     2   147   184   325   183   327 0.98 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
NAD_Gly3P_dh_N       PF01210.18   157 sp|Q8ZJM6|GPDA_YERPE -            339   6.9e-51  172.0   0.0   1   1   1.3e-53     1e-50  171.5   0.0     2   156     8   163     7   164 0.98 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
ApbA                 PF02558.11   151 sp|Q8ZJM6|GPDA_YERPE -            339     2e-12   46.7   0.0   1   1   4.4e-15   3.3e-12   46.1   0.0     2   107     9   115     8   152 0.90 Ketopantoate reductase PanE/ApbA
F420_oxidored        PF03807.12    96 sp|Q8ZJM6|GPDA_YERPE -            339   2.2e-06   27.9   0.0   1   1   1.2e-08   8.7e-06   26.0   0.0     2    90     8   105     7   111 0.86 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|Q8ZJM6|GPDA_YERPE -            339   4.1e-06   26.7   0.0   1   1   1.1e-08   8.5e-06   25.7   0.0     3   107     7   122     5   143 0.85 NAD binding domain of 6-phosphogluconate dehydrogenase
UDPG_MGDP_dh_N       PF03721.9    185 sp|Q8ZJM6|GPDA_YERPE -            339   1.4e-05   24.5   0.0   1   2   1.7e-07   0.00012   21.4   0.0     3    45     8    50     6   107 0.90 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
TrkA_N               PF02254.13   116 sp|Q8ZJM6|GPDA_YERPE -            339   1.8e-05   24.7   0.0   1   1   1.3e-07   9.7e-05   22.3   0.0     2    56     9    64     8    85 0.90 TrkA-N domain
3HCDH_N              PF02737.13   180 sp|Q8ZJM6|GPDA_YERPE -            339   0.00018   21.2   0.0   1   1   4.5e-07   0.00034   20.3   0.0     2    40     8    46     7    55 0.91 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
GIDA                 PF01134.17   392 sp|Q8ZJM6|GPDA_YERPE -            339   0.00078   18.4   0.0   1   1   1.6e-06    0.0012   17.8   0.0     3    44     9    53     7    59 0.77 Glucose inhibited division protein A
Pyr_redox_2          PF07992.9    201 sp|Q8ZJM6|GPDA_YERPE -            339    0.0021   17.9   0.1   1   1   6.6e-06    0.0049   16.7   0.0     2    51     8    64     7   101 0.78 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZJM6|GPDA_YERPE -            339    0.0061   15.5   0.2   1   1   2.2e-05     0.016   14.0   0.1     3    27     9    33     7    39 0.93 FAD dependent oxidoreductase
NAD_binding_10       PF13460.1    183 sp|Q8ZJM6|GPDA_YERPE -            339     0.007   16.3   0.1   1   1     2e-05     0.015   15.3   0.0     2    38     9    46     8    94 0.91 NADH(P)-binding
ApbA_C               PF08546.6    125 sp|Q8ZJM6|GPDA_YERPE -            339      0.02   14.8   0.0   1   1   0.00012     0.092   12.7   0.0    98   121   291   314   281   317 0.90 Ketopantoate reductase PanE/ApbA C terminal
IlvN                 PF07991.7    165 sp|Q8ZJM6|GPDA_YERPE -            339     0.038   13.3   0.3   1   1   0.00036      0.27   10.6   0.1     6    38     7    39     3   122 0.63 Acetohydroxy acid isomeroreductase, catalytic domain
Pyr_redox            PF00070.22    80 sp|Q8ZJM6|GPDA_YERPE -            339     0.043   14.2   0.0   1   1   0.00018      0.13   12.6   0.0     1    32     7    38     7    52 0.85 Pyridine nucleotide-disulphide oxidoreductase
Rossmann-like        PF10727.4    127 sp|Q8ZJM6|GPDA_YERPE -            339     0.055   13.2   0.1   1   1   0.00021      0.15   11.7   0.1    13    39     8    34     3   113 0.70 Rossmann-like domain
ThiF                 PF00899.16   136 sp|Q8ZJM6|GPDA_YERPE -            339     0.088   12.6   0.0   1   1   0.00058      0.43   10.4   0.0     3    26     6    29     4    42 0.90 ThiF family
NAD_binding_8        PF13450.1     68 sp|Q8ZJM6|GPDA_YERPE -            339     0.095   12.7   0.1   1   1   0.00013     0.095   12.7   0.1     1    25    10    34    10    39 0.94 NAD(P)-binding Rossmann-like domain
SMI1_KNR4            PF09346.5    130 sp|Q8ZJM6|GPDA_YERPE -            339      0.14   12.1   0.0   1   1   0.00039      0.29   11.1   0.0    82   120     8    44     2    54 0.84 SMI1 / KNR4 family (SUKH-1)
HAD_2                PF13419.1    176 sp|Q8ZJF3|GPH_YERPE  -            232   2.1e-31  109.5   0.0   1   1   1.2e-34   2.5e-31  109.2   0.0     1   175    10   192    10   193 0.88 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|Q8ZJF3|GPH_YERPE  -            232   4.6e-17   63.1   0.0   1   1   7.8e-20   1.6e-16   61.3   0.0     1   215     7   187     7   187 0.81 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|Q8ZJF3|GPH_YERPE  -            232   6.9e-12   44.9   0.0   1   1   5.8e-15   1.2e-11   44.1   0.0     3    75   149   218   147   218 0.89 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|Q8ZJF3|GPH_YERPE  -            232   5.1e-10   39.8   0.0   1   1   4.1e-13   8.6e-10   39.0   0.0     1   192    10   184    10   184 0.55 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|Q8ZJF3|GPH_YERPE  -            232   6.3e-05   22.8   0.0   1   1   2.3e-07   0.00049   19.9   0.0     1    42    10   122    10   150 0.89 Haloacid dehalogenase-like hydrolase
Acid_PPase           PF12689.2    169 sp|Q8ZJF3|GPH_YERPE  -            232     0.019   14.5   0.0   2   2   0.00025      0.52    9.9   0.0    41   155    90   198    67   204 0.76 Acid Phosphatase
His_Phos_1           PF00300.17   158 sp|Q8ZGY5|GPMA_YERPE -            250   8.3e-44  149.4   0.0   1   1   7.7e-48   1.1e-43  149.0   0.0     1   158     5   191     5   191 0.95 Histidine phosphatase superfamily (branch 1)
His_Phos_1           PF00300.17   158 sp|Q8ZIP0|GPMB_YERPE -            215   1.8e-37  128.8   0.0   1   1     3e-41   2.2e-37  128.5   0.0     1   157     3   156     3   157 0.93 Histidine phosphatase superfamily (branch 1)
SUZ-C                PF12901.2     34 sp|Q8ZIP0|GPMB_YERPE -            215     0.045   13.3   0.1   1   1   1.1e-05     0.084   12.5   0.1     3    22    18    37    16    37 0.92 SUZ-C motif
Metalloenzyme        PF01676.13   252 sp|Q8ZJN0|GPMI_YERPE -            515   1.8e-91  306.0   0.5   1   1   4.2e-95   2.1e-91  305.8   0.5     1   251     6   508     6   509 0.99 Metalloenzyme superfamily
iPGM_N               PF06415.8    223 sp|Q8ZJN0|GPMI_YERPE -            515   5.3e-86  287.5   0.2   1   1   1.5e-89   7.2e-86  287.1   0.2     2   223    85   309    84   309 0.99 BPG-independent PGAM N-terminus (iPGM_N)
Phosphodiest         PF01663.17   365 sp|Q8ZJN0|GPMI_YERPE -            515   4.6e-08   32.7   0.0   1   1   1.3e-11   6.4e-08   32.3   0.0   100   247   300   450   254   495 0.74 Type I phosphodiesterase / nucleotide pyrophosphatase
Ppx-GppA             PF02541.11   285 sp|Q74R94|GPPA_YERPE -            498   1.3e-96  323.2   0.4   1   1  3.6e-100   1.8e-96  322.7   0.4     1   283    22   302    22   303 0.99 Ppx/GppA phosphatase family
DDR                  PF08841.5    332 sp|Q74R94|GPPA_YERPE -            498     0.054   12.3   0.1   1   1   1.6e-05      0.08   11.7   0.1   106   156   103   153    81   232 0.81 Diol dehydratase reactivase ATPase-like domain
GreA_GreB_N          PF03449.10    74 sp|Q8ZBB3|GREA_YERPE -            158   1.5e-32  111.4   0.5   1   1   2.8e-36   2.1e-32  111.0   0.5     1    74     1    74     1    74 0.97 Transcription elongation factor, N-terminal
GreA_GreB            PF01272.14    77 sp|Q8ZBB3|GREA_YERPE -            158   6.4e-28   96.2   0.2   1   1   1.2e-31   9.2e-28   95.7   0.2     3    77    83   157    80   157 0.97 Transcription elongation factor, GreA/GreB, C-term
GreA_GreB            PF01272.14    77 sp|Q8ZJH2|GREB_YERPE -            171   2.7e-27   94.2   0.0   1   1   8.8e-31   4.3e-27   93.6   0.0     2    77    82   156    81   156 0.97 Transcription elongation factor, GreA/GreB, C-term
GreA_GreB_N          PF03449.10    74 sp|Q8ZJH2|GREB_YERPE -            171   4.5e-26   90.6   0.6   1   1   1.3e-29   6.6e-26   90.1   0.6     2    74     2    75     1    75 0.95 Transcription elongation factor, N-terminal
CDC48_N              PF02359.13    87 sp|Q8ZJH2|GREB_YERPE -            171     0.083   12.8   0.0   1   1   2.8e-05      0.14   12.1   0.0    20    83    76   142    72   144 0.81 Cell division protein 48 (CDC48), N-terminal domain
GrpE                 PF01025.14   166 sp|Q7CH40|GRPE_YERPE -            192   4.4e-48  162.9   4.5   1   1   1.9e-51   5.5e-48  162.6   4.5    15   166    19   189     2   189 0.82 GrpE
Baculo_PEP_C         PF04513.7    140 sp|Q7CH40|GRPE_YERPE -            192    0.0016   18.3   0.3   1   1   1.1e-06    0.0032   17.2   0.3    31   126    45   140    10   153 0.71 Baculovirus polyhedron envelope protein, PEP, C terminus
Apolipoprotein       PF01442.13   202 sp|Q7CH40|GRPE_YERPE -            192      0.04   13.4   8.3   1   1   3.6e-05      0.11   12.0   8.3   100   198    12   102     4   104 0.62 Apolipoprotein A1/A4/E domain
DUF2317              PF10079.4    542 sp|Q7CH40|GRPE_YERPE -            192     0.082   11.4   4.5   1   1   3.2e-05     0.095   11.2   4.5   411   497     4    90     1   125 0.84 Uncharacterized protein conserved in bacteria (DUF2317)
FlaC_arch            PF05377.6     55 sp|Q7CH40|GRPE_YERPE -            192       9.1    6.2  10.8   3   3   0.00023      0.69    9.8   0.1     9    42    94   127    88   128 0.92 Flagella accessory protein C (FlaC)
Aminotran_3          PF00202.16   339 sp|Q8ZBL9|GSA_YERPE  -            426   8.7e-73  245.0   0.0   1   1   7.2e-77   1.1e-72  244.7   0.0     1   337    35   359    35   361 0.91 Aminotransferase class-III
Glu_cys_ligase       PF04262.9    377 sp|Q8ZBU2|GSH1_YERPE -            519  8.6e-172  570.8   0.0   1   1  7.1e-176  1.1e-171  570.5   0.0     3   377     8   381     6   381 0.99 Glutamate-cysteine ligase
GSH-S_ATP            PF02955.11   174 sp|P58582|GSHB_YERPE -            319     3e-77  257.6   0.0   1   1   2.3e-80   4.3e-77  257.1   0.0     1   172   124   296   124   298 0.99 Prokaryotic glutathione synthetase, ATP-grasp domain
GSH-S_N              PF02951.9    119 sp|P58582|GSHB_YERPE -            319   7.4e-50  167.7   0.0   1   1   6.7e-53   1.2e-49  167.0   0.0     1   119     2   120     2   120 0.99 Prokaryotic glutathione synthetase, N-terminal domain
RimK                 PF08443.6    190 sp|P58582|GSHB_YERPE -            319   3.9e-12   46.0   0.0   1   1   3.1e-15   5.7e-12   45.5   0.0    18   155   135   276   125   296 0.88 RimK-like ATP-grasp domain
ATPgrasp_YheCD       PF14398.1    262 sp|P58582|GSHB_YERPE -            319   2.9e-06   26.2   0.0   1   1   2.5e-09   4.7e-06   25.5   0.0    35    89   134   190   129   211 0.78 YheC/D like ATP-grasp
ATPgrasp_ST          PF14397.1    285 sp|P58582|GSHB_YERPE -            319    0.0024   17.0   0.0   1   1   2.5e-06    0.0047   16.0   0.0    23   109   111   193    94   206 0.74 Sugar-transfer associated ATP-grasp
ATP-grasp_4          PF13535.1    184 sp|P58582|GSHB_YERPE -            319    0.0039   16.9   0.0   1   1     3e-06    0.0056   16.4   0.0    19   110   135   224   125   265 0.87 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|P58582|GSHB_YERPE -            319    0.0075   16.1   0.0   1   1   6.3e-06     0.012   15.5   0.0    23   131   146   262   121   293 0.63 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P58582|GSHB_YERPE -            319     0.024   13.3   0.0   1   1   1.7e-05     0.032   12.9   0.0   107   192   114   205    97   215 0.65 ATP-grasp in the biosynthetic pathway with Ter operon
NIF3                 PF01784.13   242 sp|Q8ZD91|GTPC1_YERPE -            247   4.5e-56  190.1   0.0   1   1   3.6e-60   5.3e-56  189.8   0.0     2   240     6   235     5   238 0.92 NIF3 (NGG1p interacting factor 3)
IMPDH                PF00478.20   352 sp|Q8ZBI2|GUAC_YERPE -            347  2.4e-112  375.3   0.2   1   1  6.8e-116  3.3e-112  374.8   0.2     3   347     9   342     7   346 0.92 IMP dehydrogenase / GMP reductase domain
FMN_dh               PF01070.13   357 sp|Q8ZBI2|GUAC_YERPE -            347    0.0048   15.7   1.2   2   2   9.7e-07    0.0048   15.7   1.2   267   311   199   244   191   254 0.84 FMN-dependent dehydrogenase
Aldolase             PF01081.14   196 sp|Q8ZBI2|GUAC_YERPE -            347      0.06   12.5   0.5   1   2   2.8e-05      0.14   11.3   0.0    43    84   135   176   109   197 0.85 KDPG and KHG aldolase
Prismane             PF03063.15   516 sp|Q8ZGE1|HCP_YERPE  -            550  2.7e-159  530.8   0.0   1   1  4.1e-163    3e-159  530.7   0.0     1   516     1   548     1   548 0.98 Prismane/CO dehydrogenase family
DUF3703              PF12487.3    112 sp|Q8ZGE1|HCP_YERPE  -            550    0.0067   16.0   0.0   1   1   1.9e-06     0.014   15.0   0.0    28    64   162   198   157   207 0.90 Protein of unknown function (DUF3703)
Bac_DnaA             PF00308.13   219 sp|Q8ZCC1|HDA_YERPE  -            239   2.1e-17   63.4   0.0   1   1   2.5e-20   3.6e-16   59.4   0.0     6   212    24   217    19   223 0.85 Bacterial dnaA  protein
GlutR_N              PF05201.10   152 sp|Q8ZEX9|HEM1_YERPE -            420   9.6e-58  194.0   0.0   1   1   1.4e-60   2.3e-57  192.8   0.0     1   152     6   157     6   157 0.99 Glutamyl-tRNAGlu reductase, N-terminal domain
Shikimate_DH         PF01488.15   135 sp|Q8ZEX9|HEM1_YERPE -            420   4.2e-43  146.6   0.2   1   1   5.5e-46     9e-43  145.6   0.2     2   135   172   306   171   306 0.96 Shikimate / quinate 5-dehydrogenase
GlutR_dimer          PF00745.15   101 sp|Q8ZEX9|HEM1_YERPE -            420   7.6e-27   93.2   1.5   1   1   4.6e-30   7.6e-27   93.2   1.5     2   101   320   418   319   418 0.98 Glutamyl-tRNAGlu reductase, dimerisation domain
F420_oxidored        PF03807.12    96 sp|Q8ZEX9|HEM1_YERPE -            420     7e-05   23.1   0.4   1   1   4.2e-08     7e-05   23.1   0.4     4    66   187   247   184   282 0.84 NADP oxidoreductase coenzyme F420-dependent
Saccharop_dh         PF03435.13   386 sp|Q8ZEX9|HEM1_YERPE -            420    0.0085   15.1   0.1   1   1   8.4e-06     0.014   14.4   0.1     1    54   185   232   185   271 0.81 Saccharopine dehydrogenase
OCD_Mu_crystall      PF02423.10   314 sp|Q8ZEX9|HEM1_YERPE -            420    0.0086   14.8   0.3   1   1   5.2e-06    0.0086   14.8   0.3   134   216   187   263   158   267 0.89 Ornithine cyclodeaminase/mu-crystallin family
TroA                 PF01297.12   256 sp|Q8ZEX9|HEM1_YERPE -            420     0.041   13.1   1.4   2   2   5.4e-05     0.089   12.0   0.1   188   237   194   242   188   252 0.85 Periplasmic solute binding protein family
GFO_IDH_MocA         PF01408.17   120 sp|Q8ZEX9|HEM1_YERPE -            420     0.089   13.3   0.4   1   1   0.00021      0.35   11.4   0.0     1    83   183   266   183   276 0.75 Oxidoreductase family, NAD-binding Rossmann fold
Porphobil_deam       PF01379.15   215 sp|P46355|HEM3_YERPE -            313   7.5e-92  306.0   0.0   1   1   1.3e-95   9.3e-92  305.7   0.0     2   214     6   216     5   217 0.99 Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC      PF03900.10    74 sp|P46355|HEM3_YERPE -            313   2.4e-23   82.0   0.3   1   1   6.3e-27   4.7e-23   81.0   0.3     2    73   226   295   225   296 0.97 Porphobilinogen deaminase, C-terminal domain
Coprogen_oxidas      PF01218.13   296 sp|Q8ZCF9|HEM6_YERPE -            309  1.2e-143  477.1   0.0   1   1    9e-148  1.3e-143  476.9   0.0     3   296     9   302     7   302 0.99 Coproporphyrinogen III oxidase
Ferrochelatase       PF00762.14   316 sp|Q8ZC98|HEMH_YERPE -            320  4.7e-104  347.7   0.0   1   1    7e-108  5.2e-104  347.6   0.0     2   315     6   319     5   320 0.98 Ferrochelatase
CbiX                 PF01903.12   105 sp|Q8ZC98|HEMH_YERPE -            320   9.4e-07   28.9   0.0   1   2   1.9e-07    0.0014   18.7   0.0    18    59    86   127    80   182 0.90 CbiX
DUF489               PF04356.7    193 sp|Q8ZFQ6|HFLD_YERPE -            208   7.3e-79  263.8   1.9   1   1   1.1e-82   8.3e-79  263.6   1.9     1   193     7   200     7   200 0.99 Protein of unknown function (DUF489)
Methyltransf_20      PF12147.3    311 sp|Q8ZFQ6|HFLD_YERPE -            208     0.086   11.6   0.0   1   1   1.7e-05      0.12   11.1   0.0   222   272    30    82    18    94 0.90 Putative methyltransferase
LSM                  PF01423.17    67 sp|Q8ZIW2|HFQ_YERPE  -            101   5.4e-09   35.4   0.0   1   1   5.5e-13   8.1e-09   34.9   0.0     7    67    16    64     6    64 0.86 LSM domain
HisG                 PF01634.13   163 sp|Q8ZFX4|HIS1_YERPE -            299   1.3e-52  177.6   0.0   1   1   2.8e-56   2.1e-52  177.0   0.0     1   163    53   221    53   221 0.94 ATP phosphoribosyltransferase
HisG_C               PF08029.6     75 sp|Q8ZFX4|HIS1_YERPE -            299   2.9e-27   94.4   0.0   2   2   1.1e-30   8.2e-27   92.9   0.0     1    75   222   297   222   297 0.98 HisG, C-terminal domain
PRA-CH               PF01502.13    75 sp|Q8ZFY1|HIS2_YERPE -            204   1.6e-33  114.1   0.0   1   1   6.2e-37   3.1e-33  113.2   0.0     1    74    33   106    33   107 0.99 Phosphoribosyl-AMP cyclohydrolase
PRA-PH               PF01503.12    83 sp|Q8ZFY1|HIS2_YERPE -            204   1.8e-12   47.3   0.2   1   1   5.1e-16   2.5e-12   46.8   0.2     2    80   116   199   115   202 0.93 Phosphoribosyl-ATP pyrophosphohydrolase
MazG                 PF03819.12    74 sp|Q8ZFY1|HIS2_YERPE -            204     0.011   15.6   0.2   1   1   3.6e-06     0.018   14.9   0.2     6    63   146   199   141   204 0.84 MazG nucleotide pyrophosphohydrolase domain
His_biosynth         PF00977.16   229 sp|Q8ZFX9|HIS4_YERPE -            245   1.5e-77  259.9   0.1   1   1   1.6e-80   1.7e-77  259.7   0.1     1   228     1   233     1   234 0.98 Histidine biosynthesis protein
Dus                  PF01207.12   310 sp|Q8ZFX9|HIS4_YERPE -            245     2e-07   30.1   0.2   1   2   1.6e-06    0.0017   17.2   0.0   176   233    66   119    56   165 0.76 Dihydrouridine synthase (Dus)
Dus                  PF01207.12   310 sp|Q8ZFX9|HIS4_YERPE -            245     2e-07   30.1   0.2   2   2   0.00012      0.13   11.0   0.0   176   217   188   229   180   235 0.91 Dihydrouridine synthase (Dus)
Trp_syntA            PF00290.15   259 sp|Q8ZFX9|HIS4_YERPE -            245   1.2e-06   27.2   0.0   1   2   9.2e-08   9.8e-05   21.0   0.0   175   234    51   110    32   127 0.85 Tryptophan synthase alpha chain
FMN_dh               PF01070.13   357 sp|Q8ZFX9|HIS4_YERPE -            245   1.2e-05   24.3   5.2   1   3   1.6e-06    0.0017   17.2   1.1   266   312    61   105    53   108 0.77 FMN-dependent dehydrogenase
TMP-TENI             PF02581.12   180 sp|Q8ZFX9|HIS4_YERPE -            245   2.3e-05   23.5   0.6   1   2   2.7e-05     0.029   13.4   0.1   131   178    55   103    47   105 0.88 Thiamine monophosphate synthase/TENI
IGPS                 PF00218.16   254 sp|Q8ZFX9|HIS4_YERPE -            245   0.00012   21.2   0.0   1   2   0.00081      0.86    8.6   0.0   214   248    78   112    61   117 0.84 Indole-3-glycerol phosphate synthase
IGPS                 PF00218.16   254 sp|Q8ZFX9|HIS4_YERPE -            245   0.00012   21.2   0.0   2   2   0.00024      0.26   10.3   0.0   205   245   193   232   181   240 0.78 Indole-3-glycerol phosphate synthase
IMPDH                PF00478.20   352 sp|Q8ZFX9|HIS4_YERPE -            245   0.00038   19.4   0.1   1   2   1.2e-05     0.012   14.4   0.0   208   245    70   107    54   125 0.84 IMP dehydrogenase / GMP reductase domain
PcrB                 PF01884.12   231 sp|Q8ZFX9|HIS4_YERPE -            245   0.00051   19.3   0.2   1   2   7.9e-06    0.0083   15.3   0.0   182   221    73   113    45   123 0.79 PcrB family
NMO                  PF03060.10   330 sp|Q8ZFX9|HIS4_YERPE -            245   0.00054   19.2   2.5   1   2   5.5e-06    0.0059   15.8   0.7   179   221    62   104    51   111 0.87 Nitronate monooxygenase
NanE                 PF04131.9    192 sp|Q8ZFX9|HIS4_YERPE -            245    0.0035   16.3   0.2   1   3   2.8e-05     0.029   13.3   0.0   124   187    52   117    39   121 0.84 Putative N-acetylmannosamine-6-phosphate epimerase
DHO_dh               PF01180.16   295 sp|Q8ZFX9|HIS4_YERPE -            245    0.0043   16.0   0.0   1   1   7.6e-06     0.008   15.1   0.0   232   279    63   108    52   118 0.81 Dihydroorotate dehydrogenase
ThiG                 PF05690.9    247 sp|Q8ZFX9|HIS4_YERPE -            245    0.0058   15.7   0.1   1   2   2.4e-05     0.026   13.6   0.2   165   209    63   108    44   141 0.86 Thiazole biosynthesis protein ThiG
Ribul_P_3_epim       PF00834.14   201 sp|Q8ZFX9|HIS4_YERPE -            245    0.0076   15.3   0.4   1   2   0.00021      0.23   10.5   0.1   157   200    66   108    56   109 0.79 Ribulose-phosphate 3 epimerase family
QRPTase_C            PF01729.14   169 sp|Q8ZFX9|HIS4_YERPE -            245     0.099   12.1   0.0   2   2   0.00043      0.46   10.0   0.0    46   157   118   227    90   233 0.84 Quinolinate phosphoribosyl transferase, C-terminal domain
His_biosynth         PF00977.16   229 sp|Q8ZFY0|HIS6_YERPE -            258     2e-76  256.2   0.5   1   1   1.5e-79   2.3e-76  256.0   0.5     1   228     5   239     5   240 0.97 Histidine biosynthesis protein
Dus                  PF01207.12   310 sp|Q8ZFY0|HIS6_YERPE -            258   6.8e-06   25.1   0.0   1   2   3.6e-08   5.4e-05   22.1   0.0   138   225    30   115    12   164 0.87 Dihydrouridine synthase (Dus)
ThiG                 PF05690.9    247 sp|Q8ZFY0|HIS6_YERPE -            258   7.8e-05   21.8   0.1   1   2     2e-05      0.03   13.4   0.1   159   209    58   109    28   127 0.78 Thiazole biosynthesis protein ThiG
NMO                  PF03060.10   330 sp|Q8ZFY0|HIS6_YERPE -            258   0.00041   19.6   0.2   1   2   1.2e-05     0.019   14.1   0.1   180   216    64   100    33   108 0.86 Nitronate monooxygenase
PcrB                 PF01884.12   231 sp|Q8ZFY0|HIS6_YERPE -            258   0.00081   18.7   0.0   1   1   1.2e-06    0.0018   17.5   0.0   169   208    61   100    35   112 0.86 PcrB family
TMP-TENI             PF02581.12   180 sp|Q8ZFY0|HIS6_YERPE -            258     0.002   17.2   0.0   1   2   9.9e-05      0.15   11.1   0.0   132   176    57   102    33   105 0.78 Thiamine monophosphate synthase/TENI
Oxidored_FMN         PF00724.15   341 sp|Q8ZFY0|HIS6_YERPE -            258    0.0089   15.0   0.0   1   2   3.4e-05     0.051   12.5   0.0   284   335    67   117    30   120 0.86 NADH:flavin oxidoreductase / NADH oxidase family
ChitinaseA_N         PF08329.5    133 sp|Q8ZFY0|HIS6_YERPE -            258     0.031   14.0   0.1   1   1   2.9e-05     0.043   13.5   0.1    19    97   100   184    78   190 0.74 Chitinase A, N-terminal domain
DHO_dh               PF01180.16   295 sp|Q8ZFY0|HIS6_YERPE -            258      0.04   12.8   0.0   1   2   0.00021      0.31    9.9   0.0   235   276    67   106    61   119 0.80 Dihydroorotate dehydrogenase
IGPD                 PF00475.13   145 sp|Q8ZFX7|HIS7_YERPE -            355   2.2e-63  212.4   0.4   1   1   8.5e-67   3.1e-63  211.9   0.4     1   145   196   338   196   338 0.99 Imidazoleglycerol-phosphate dehydratase
PNK3P                PF08645.6    159 sp|Q8ZFX7|HIS7_YERPE -            355     1e-05   25.0   0.0   1   2   1.2e-08   4.6e-05   22.9   0.0     2   126     5   130     4   144 0.72 Polynucleotide kinase 3 phosphatase
Hydrolase_like       PF13242.1     75 sp|Q8ZFX7|HIS7_YERPE -            355     5e-05   22.9   0.0   1   1   2.9e-08   0.00011   21.8   0.0     2    45   103   145   102   154 0.90 HAD-hyrolase-like
HAD_2                PF13419.1    176 sp|Q8ZFX7|HIS7_YERPE -            355   0.00024   21.3   0.0   1   2     3e-06     0.011   15.9   0.0    74   173    28   145     9   148 0.80 Haloacid dehalogenase-like hydrolase
Aminotran_1_2        PF00155.16   363 sp|Q8ZFX6|HIS8_YERPE -            382   4.7e-61  206.7   0.0   1   1   1.1e-64   5.6e-61  206.4   0.0    31   363    47   352    31   352 0.94 Aminotransferase class I and II
Alliinase_C          PF04864.8    363 sp|Q8ZFX6|HIS8_YERPE -            382     0.016   13.8   0.0   1   1   5.3e-06     0.026   13.1   0.0   104   209   109   230    95   243 0.63 Allinase
Cys_Met_Meta_PP      PF01053.15   386 sp|Q8ZFX6|HIS8_YERPE -            382      0.02   13.1   0.0   1   1   6.8e-06     0.034   12.4   0.0    86   180    92   188    75   194 0.67 Cys/Met metabolism PLP-dependent enzyme
Histidinol_dh        PF00815.15   413 sp|Q8ZFX5|HISX_YERPE -            443  3.9e-174  579.1   2.3   1   1  6.3e-178  4.7e-174  578.8   2.3     2   412    21   430    20   431 0.99 Histidinol dehydrogenase
SIP                  PF04954.8    119 sp|Q8ZFX5|HISX_YERPE -            443      0.43   10.9   2.6   2   2   6.5e-05      0.48   10.7   0.9     2    60   240   300   239   319 0.86 Siderophore-interacting protein
Epimerase            PF01370.16   236 sp|Q8ZJN4|HLDD_YERPE -            310   1.2e-49  168.8   0.0   1   1     7e-53   1.5e-49  168.6   0.0     1   236     2   236     2   236 0.92 NAD dependent epimerase/dehydratase family
3Beta_HSD            PF01073.14   280 sp|Q8ZJN4|HLDD_YERPE -            310   1.4e-13   50.2   0.0   1   1   8.7e-17   1.8e-13   49.8   0.0     1   223     3   219     3   225 0.79 3-beta hydroxysteroid dehydrogenase/isomerase family
RmlD_sub_bind        PF04321.12   287 sp|Q8ZJN4|HLDD_YERPE -            310   1.6e-10   40.3   0.0   1   1   1.3e-13   2.8e-10   39.5   0.0     3   282     2   303     1   307 0.76 RmlD substrate binding domain
NAD_binding_4        PF07993.7    249 sp|Q8ZJN4|HLDD_YERPE -            310   4.6e-08   32.3   0.0   2   2   5.6e-09   1.2e-05   24.3   0.0    87   214    68   188    62   220 0.83 Male sterility protein
Polysacc_synt_2      PF02719.10   294 sp|Q8ZJN4|HLDD_YERPE -            310   3.8e-06   26.0   0.0   1   2   3.8e-05     0.081   11.7   0.0     1    31     2    32     2    76 0.85 Polysaccharide biosynthesis protein
Polysacc_synt_2      PF02719.10   294 sp|Q8ZJN4|HLDD_YERPE -            310   3.8e-06   26.0   0.0   2   2   2.4e-05     0.051   12.4   0.0   133   241   135   248   129   269 0.69 Polysaccharide biosynthesis protein
adh_short            PF00106.20   167 sp|Q8ZJN4|HLDD_YERPE -            310     0.013   15.3   0.5   1   1   3.8e-05      0.08   12.8   0.5     3    89     2    77     1    85 0.79 short chain dehydrogenase
ThiF                 PF00899.16   136 sp|Q8ZJN4|HLDD_YERPE -            310     0.035   13.9   0.4   1   2   0.00024       0.5   10.1   0.2     9    34     7    32     1    43 0.88 ThiF family
PfkB                 PF00294.19   301 sp|Q8ZI60|HLDE_YERPE -            476   2.1e-47  161.7   0.0   1   1   1.3e-50   3.1e-47  161.1   0.0     2   299    11   305    10   307 0.86 pfkB family carbohydrate kinase
CTP_transf_2         PF01467.21   157 sp|Q8ZI60|HLDE_YERPE -            476   3.7e-12   46.5   0.0   1   1   2.8e-15   6.8e-12   45.7   0.0     1   156   344   469   344   470 0.94 Cytidylyltransferase
Phos_pyr_kin         PF08543.7    246 sp|Q8ZI60|HLDE_YERPE -            476   2.4e-06   26.9   0.0   1   1   2.4e-09   5.9e-06   25.6   0.0   119   224   188   287   174   293 0.88 Phosphomethylpyrimidine kinase
Carb_kinase          PF01256.12   242 sp|Q8ZI60|HLDE_YERPE -            476   2.2e-05   23.8   0.1   1   1   1.7e-08   4.2e-05   22.9   0.1    80   218   157   297   138   312 0.77 Carbohydrate kinase
FAD_syn              PF06574.7    158 sp|Q8ZI60|HLDE_YERPE -            476     0.059   12.9   0.0   1   1   4.1e-05       0.1   12.2   0.0     4    41   338   372   335   431 0.66 FAD synthetase
Na_H_antiport_2      PF13726.1     88 sp|Q8ZI60|HLDE_YERPE -            476     0.066   13.1   0.3   1   1   7.1e-05      0.18   11.7   0.0    46    83    46    83    28    88 0.84 Na+-H+ antiporter family
FAD_binding_6        PF00970.19    99 sp|Q8ZCR0|HMP_YERPE  -            396   6.6e-14   51.8   0.0   1   1   4.3e-17   1.1e-13   51.1   0.0     2    98   155   253   154   254 0.92 Oxidoreductase FAD-binding domain
Globin               PF00042.17   110 sp|Q8ZCR0|HMP_YERPE  -            396   7.6e-14   51.9   0.0   1   1   6.7e-17   1.6e-13   50.9   0.0     2   109     7   102     6   103 0.94 Globin
NAD_binding_1        PF00175.16   109 sp|Q8ZCR0|HMP_YERPE  -            396   1.7e-13   51.0   0.0   1   1   1.5e-16   3.7e-13   49.9   0.0     1   107   264   371   264   373 0.82 Oxidoreductase NAD-binding domain
Protoglobin          PF11563.3    158 sp|Q8ZCR0|HMP_YERPE  -            396   5.6e-06   26.0   0.0   1   1   3.5e-09   8.7e-06   25.4   0.0    14   104     2    95     1   133 0.86 Protoglobin
FAD_binding_8        PF08022.7    105 sp|Q8ZCR0|HMP_YERPE  -            396     0.083   12.7   0.0   1   1     6e-05      0.15   11.9   0.0    27    80   180   235   165   278 0.80 FAD-binding domain
NAD_binding_6        PF08030.7    156 sp|Q8ZCR0|HMP_YERPE  -            396       0.1   12.4   0.0   1   1   0.00012       0.3   10.9   0.0     4    28   262   286   260   315 0.88 Ferric reductase NAD binding domain
TonB_dep_Rec         PF00593.19   277 sp|Q56989|HMUR_YERPE -            676   1.8e-30  106.7  12.6   2   2   3.7e-34   1.8e-30  106.7  12.6     3   276   426   674   424   675 0.82 TonB dependent receptor
Plug                 PF07715.10   108 sp|Q56989|HMUR_YERPE -            676   3.6e-25   88.3   1.5   1   1   2.6e-28   1.3e-24   86.6   1.5     4   108    59   161    56   161 0.95 TonB-dependent Receptor Plug Domain
OMP_b-brl_3          PF14905.1    506 sp|Q56989|HMUR_YERPE -            676   2.5e-07   29.7   5.7   2   2     5e-11   2.5e-07   29.7   5.7   230   394   403   574   394   643 0.67 Outer membrane protein beta-barrel family
FecCD                PF01032.13   311 sp|Q56992|HMUU_YERPE -            334   1.5e-95  319.5  35.1   1   1   2.4e-99   1.8e-95  319.3  35.1     1   311    17   327    14   327 0.97 FecCD transport family
ABC-3                PF00950.12   258 sp|Q56992|HMUU_YERPE -            334    0.0016   17.7   8.3   2   2   2.2e-07    0.0016   17.7   8.3    56   223   119   289   101   316 0.82 ABC 3 transport family
ABC_tran             PF00005.22   137 sp|Q56993|HMUV_YERPE -            266   3.8e-25   88.7   0.0   1   1   9.6e-28   5.4e-25   88.2   0.0     2   137    28   176    27   176 0.89 ABC transporter
SMC_N                PF02463.14   220 sp|Q56993|HMUV_YERPE -            266   8.5e-09   34.9   0.0   1   1   3.9e-10   2.2e-07   30.3   0.0    24   196    37   203    27   223 0.74 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|Q56993|HMUV_YERPE -            266   2.1e-08   34.4   0.0   1   2   5.9e-08   3.4e-05   23.9   0.0     2    24    40    62    39   104 0.80 AAA domain
SbcCD_C              PF13558.1     90 sp|Q56993|HMUV_YERPE -            266   3.9e-06   26.6   0.0   1   1   1.2e-08   7.1e-06   25.8   0.0    26    90   135   192   118   192 0.81 Putative exonuclease SbcCD, C subunit
AAA_29               PF13555.1     62 sp|Q56993|HMUV_YERPE -            266   9.4e-05   21.8   0.0   1   1   3.5e-07    0.0002   20.8   0.0    18    40    33    54    25    68 0.79 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|Q56993|HMUV_YERPE -            266   0.00023   21.2   4.7   1   1   2.2e-06    0.0013   18.7   4.7    20   176    33   196    20   223 0.47 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q56993|HMUV_YERPE -            266   0.00025   21.4   0.0   1   1   6.9e-07   0.00039   20.8   0.0    18    41    36    59    25    69 0.79 AAA domain
DUF258               PF03193.11   161 sp|Q56993|HMUV_YERPE -            266   0.00028   20.1   0.0   1   1   7.3e-07   0.00042   19.5   0.0    13    59    14    61     4   109 0.88 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|Q56993|HMUV_YERPE -            266   0.00043   20.4   0.0   1   1   3.4e-06    0.0019   18.3   0.0     3   119    36   201    33   232 0.69 AAA domain
MutS_V               PF00488.16   235 sp|Q56993|HMUV_YERPE -            266   0.00057   19.3   0.0   1   1   1.9e-06    0.0011   18.4   0.0    28    62    22    56     7    61 0.85 MutS domain V
AAA_17               PF13207.1    121 sp|Q56993|HMUV_YERPE -            266    0.0023   18.7   0.0   1   1   9.9e-06    0.0057   17.4   0.0     2    23    40    61    39   100 0.82 AAA domain
AAA_30               PF13604.1    196 sp|Q56993|HMUV_YERPE -            266    0.0082   15.7   0.0   1   1     3e-05     0.017   14.6   0.0     6    46    23    65    18    90 0.72 AAA domain
AAA_10               PF12846.2    304 sp|Q56993|HMUV_YERPE -            266     0.011   15.2   0.1   1   1   4.4e-05     0.025   14.0   0.1     4    43    40    80    37   198 0.62 AAA-like domain
AAA_14               PF13173.1    128 sp|Q56993|HMUV_YERPE -            266     0.011   15.6   0.0   1   1   9.8e-05     0.056   13.3   0.0     2    46    37    84    36   106 0.71 AAA domain
AAA_25               PF13481.1    194 sp|Q56993|HMUV_YERPE -            266     0.012   15.0   0.4   1   2   0.00032      0.18   11.1   0.1    29    50    33    54    20    90 0.81 AAA domain
Mg_chelatase         PF01078.16   207 sp|Q56993|HMUV_YERPE -            266     0.012   14.7   0.4   1   2   7.6e-05     0.043   12.9   0.1    14    80    29    95    18   117 0.75 Magnesium chelatase, subunit ChlI
AAA_28               PF13521.1    163 sp|Q56993|HMUV_YERPE -            266     0.018   15.0   0.5   1   1   0.00013     0.072   13.0   0.5     2    20    40    58    39   206 0.94 AAA domain
AAA_13               PF13166.1    712 sp|Q56993|HMUV_YERPE -            266     0.022   13.2   0.0   1   2    0.0004      0.23    9.8   0.0    20    39    41    60    27    91 0.81 AAA domain
MMR_HSR1             PF01926.18   116 sp|Q56993|HMUV_YERPE -            266     0.026   14.4   0.0   1   1   8.6e-05     0.049   13.5   0.0     2    21    40    59    39    89 0.91 50S ribosome-binding GTPase
NACHT                PF05729.7    166 sp|Q56993|HMUV_YERPE -            266     0.028   14.0   1.3   1   2   0.00036      0.21   11.2   0.0     2    21    39    58    38    71 0.84 NACHT domain
MobB                 PF03205.9    140 sp|Q56993|HMUV_YERPE -            266     0.039   13.6   0.0   1   1   0.00013     0.072   12.7   0.0     2    25    39    62    38    70 0.87 Molybdopterin guanine dinucleotide synthesis protein B
AAA_33               PF13671.1    143 sp|Q56993|HMUV_YERPE -            266     0.047   13.5   0.1   1   1   0.00017     0.099   12.5   0.1     1    19    39    57    39   161 0.87 AAA domain
ArgK                 PF03308.11   267 sp|Q56993|HMUV_YERPE -            266     0.066   11.9   0.0   1   1   0.00019      0.11   11.2   0.0    13    51    17    59     6    67 0.81 ArgK protein
AAA_18               PF13238.1    129 sp|Q56993|HMUV_YERPE -            266       0.1   12.9   0.0   1   1   0.00028      0.16   12.2   0.0     1    27    40    76    40    89 0.72 AAA domain
BCA_ABC_TP_C         PF12399.3     23 sp|Q56993|HMUV_YERPE -            266      0.12   12.0   0.0   1   1   0.00047      0.27   10.9   0.0     1    13   225   237   225   239 0.89 Branched-chain amino acid ATP-binding cassette transporter
AAA_15               PF13175.1    415 sp|Q56993|HMUV_YERPE -            266      0.21   10.5   0.0   1   1   0.00052       0.3   10.1   0.0    12    42    27    57    19    76 0.81 AAA ATPase domain
HSP70                PF00012.15   602 sp|Q8ZCS5|HSCA_YERPE -            650  1.7e-187  624.0   0.1   1   2     1e-06    0.0026   15.7   0.0     2    28    22    48    21    51 0.93 Hsp70 protein
HSP70                PF00012.15   602 sp|Q8ZCS5|HSCA_YERPE -            650  1.7e-187  624.0   0.1   2   2  1.4e-185  3.5e-182  606.5   0.0    25   600    79   633    73   635 0.97 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|Q8ZCS5|HSCA_YERPE -            650     3e-15   55.6   2.7   2   2   7.9e-18     2e-14   52.9   0.9    65   318   155   407   148   413 0.84 MreB/Mbl protein
DDR                  PF08841.5    332 sp|Q8ZCS5|HSCA_YERPE -            650      0.23   10.2   6.5   1   3   0.00021      0.53    9.0   0.1   117   165   218   265   185   270 0.82 Diol dehydratase reactivase ATPase-like domain
ST7                  PF04184.7    540 sp|Q8ZCS5|HSCA_YERPE -            650      0.46    8.6   3.0   1   1    0.0003      0.73    7.9   3.0   183   256   563   637   523   644 0.73 ST7 protein
HSCB_C               PF07743.8     78 sp|Q8ZCS4|HSCB_YERPE -            174   1.2e-20   73.7  13.4   2   2     6e-24   2.2e-20   72.8   9.3     2    78    87   164    86   164 0.97 HSCB C-terminal oligomerisation domain
DnaJ                 PF00226.26    64 sp|Q8ZCS4|HSCB_YERPE -            174   1.9e-12   46.7   0.2   1   1   8.7e-16   3.2e-12   45.9   0.2     1    63     2    70     2    71 0.96 DnaJ domain
DUF480               PF04337.7    148 sp|Q8ZCS4|HSCB_YERPE -            174    0.0098   15.7   1.0   1   1   2.3e-05     0.084   12.7   0.7    22    83    69   132    62   167 0.81 Protein of unknown function, DUF480
HSP33                PF01430.14   280 sp|Q8ZJG8|HSLO_YERPE -            293   2.5e-98  328.6   0.6   1   1    2e-102   2.9e-98  328.4   0.6     1   280     4   275     4   275 0.97 Hsp33 protein
AAA_2                PF07724.9    171 sp|Q8ZJJ5|HSLU_YERPE -            443     1e-50  171.9   0.6   1   2   2.3e-09   1.2e-06   28.5   0.0     5    66    52   113    49   116 0.93 AAA domain (Cdc48 subfamily)
AAA_2                PF07724.9    171 sp|Q8ZJJ5|HSLU_YERPE -            443     1e-50  171.9   0.6   2   2   4.3e-44   2.3e-41  141.5   0.2    10   171   188   329   170   329 0.89 AAA domain (Cdc48 subfamily)
AAA                  PF00004.24   132 sp|Q8ZJJ5|HSLU_YERPE -            443   1.7e-16   60.6   0.0   1   2   1.4e-09   7.5e-07   29.4   0.0     1    50    53   103    53   137 0.78 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|Q8ZJJ5|HSLU_YERPE -            443   1.7e-16   60.6   0.0   2   2   3.2e-09   1.7e-06   28.2   0.0    27   130   214   332   192   334 0.73 ATPase family associated with various cellular activities (AAA)
AAA_22               PF13401.1    131 sp|Q8ZJJ5|HSLU_YERPE -            443   1.4e-07   31.7   0.1   1   2   1.2e-07   6.4e-05   23.1   0.0     6    86    52   130    45   136 0.74 AAA domain
AAA_5                PF07728.9    139 sp|Q8ZJJ5|HSLU_YERPE -            443   1.9e-07   30.9   0.1   1   2   2.6e-08   1.4e-05   24.8   0.0     1    38    52    89    52   163 0.88 AAA domain (dynein-related subfamily)
ClpB_D2-small        PF10431.4     81 sp|Q8ZJJ5|HSLU_YERPE -            443   2.9e-07   30.2   1.1   1   1   1.3e-09   6.9e-07   29.0   0.1     1    62   335   405   335   414 0.90 C-terminal, D2-small domain, of ClpB protein
AAA_17               PF13207.1    121 sp|Q8ZJJ5|HSLU_YERPE -            443   7.4e-06   26.7   0.4   1   1   4.9e-08   2.6e-05   25.0   0.1     2    33    53    86    52   268 0.82 AAA domain
Mg_chelatase         PF01078.16   207 sp|Q8ZJJ5|HSLU_YERPE -            443     4e-05   22.8   0.1   2   3   5.7e-06     0.003   16.7   0.0    23    58    51    87    45   118 0.79 Magnesium chelatase, subunit ChlI
MCM                  PF00493.18   331 sp|Q8ZJJ5|HSLU_YERPE -            443     4e-05   22.5   0.2   1   2   2.7e-06    0.0014   17.4   0.0    16    83     7    76     2   100 0.82 MCM2/3/5 family
AAA_16               PF13191.1    185 sp|Q8ZJJ5|HSLU_YERPE -            443     7e-05   22.8   0.5   1   1     9e-07   0.00048   20.1   0.1    23   135    49   160    38   295 0.68 AAA ATPase domain
Sigma54_activat      PF00158.21   168 sp|Q8ZJJ5|HSLU_YERPE -            443    0.0003   20.2   0.0   1   2   3.2e-05     0.017   14.5   0.0    20    61    48    86    32    89 0.80 Sigma-54 interaction domain
AAA_18               PF13238.1    129 sp|Q8ZJJ5|HSLU_YERPE -            443   0.00032   20.9   0.3   1   1   3.7e-06     0.002   18.4   0.0     1    23    53    90    53   139 0.69 AAA domain
RuvB_N               PF05496.7    234 sp|Q8ZJJ5|HSLU_YERPE -            443   0.00092   18.3   0.6   1   2   6.2e-05     0.033   13.2   0.0    25    78    16    78     3   138 0.67 Holliday junction DNA helicase ruvB N-terminus
Zeta_toxin           PF06414.7    201 sp|Q8ZJJ5|HSLU_YERPE -            443    0.0016   17.5   0.1   1   1   9.7e-06    0.0051   15.9   0.1    12    55    46    88    36   136 0.76 Zeta toxin
IstB_IS21            PF01695.12   178 sp|Q8ZJJ5|HSLU_YERPE -            443    0.0023   17.3   0.0   1   1   1.5e-05    0.0081   15.5   0.0    46    71    49    74    32    90 0.81 IstB-like ATP binding protein
TIP49                PF06068.8    398 sp|Q8ZJJ5|HSLU_YERPE -            443    0.0035   16.1   1.2   1   2   1.7e-05     0.009   14.7   0.0    20    88    11    86     4   122 0.78 TIP49 C-terminus
AAA_33               PF13671.1    143 sp|Q8ZJJ5|HSLU_YERPE -            443     0.008   16.0   0.0   1   1   3.8e-05      0.02   14.7   0.0     2    33    53    84    53   167 0.78 AAA domain
G-alpha              PF00503.15   389 sp|Q8ZJJ5|HSLU_YERPE -            443     0.013   14.1   0.3   1   1   3.8e-05      0.02   13.5   0.3    41   206    33   264     7   274 0.70 G-protein alpha subunit
DUF258               PF03193.11   161 sp|Q8ZJJ5|HSLU_YERPE -            443     0.021   14.0   0.0   1   1     8e-05     0.043   13.0   0.0    23    60    38    75    20   212 0.83 Protein of unknown function, DUF258
ResIII               PF04851.10   184 sp|Q8ZJJ5|HSLU_YERPE -            443     0.024   14.4   0.7   1   2   0.00043      0.23   11.2   0.0    22    51    41    75    18    86 0.71 Type III restriction enzyme, res subunit
AAA_28               PF13521.1    163 sp|Q8ZJJ5|HSLU_YERPE -            443     0.035   14.0   1.1   1   1   0.00025      0.13   12.1   0.1     2    43    53    95    52   136 0.64 AAA domain
SRP54                PF00448.17   196 sp|Q8ZJJ5|HSLU_YERPE -            443     0.052   12.9   0.0   1   1   0.00022      0.12   11.8   0.0     2    26    51    75    50    83 0.85 SRP54-type protein, GTPase domain
DEAD                 PF00270.24   169 sp|Q8ZJJ5|HSLU_YERPE -            443     0.065   12.7   1.4   1   1   0.00071      0.37   10.2   1.4    14    33    50    69    36   357 0.73 DEAD/DEAH box helicase
ABC_tran             PF00005.22   137 sp|Q8ZJJ5|HSLU_YERPE -            443     0.079   13.2   0.0   1   1   0.00055      0.29   11.4   0.0    13    97    52   168    46   257 0.75 ABC transporter
ATP-synt_ab          PF00006.20   215 sp|Q8ZJJ5|HSLU_YERPE -            443     0.089   12.2   0.0   1   1   0.00033      0.17   11.3   0.0    17    66    52   106    48   156 0.82 ATP synthase alpha/beta family, nucleotide-binding domain
DUF3807              PF12720.2    172 sp|Q8ZJJ5|HSLU_YERPE -            443     0.093   12.8   0.3   1   1   0.00031      0.16   12.0   0.3    44    78    97   147    84   250 0.68 Protein of unknown function (DUF3807)
RNA_helicase         PF00910.17   107 sp|Q8ZJJ5|HSLU_YERPE -            443      0.14   12.3   0.0   1   1    0.0016      0.85    9.8   0.0     1    23    53    75    53   112 0.80 RNA helicase
Proteasome           PF00227.21   190 sp|Q8ZJJ4|HSLV_YERPE -            174   3.6e-23   81.8   0.1   1   1   8.3e-27   6.1e-23   81.0   0.1     5   183     2   165     2   172 0.95 Proteasome subunit
PspC                 PF04024.7     61 sp|Q8ZJJ4|HSLV_YERPE -            174     0.013   14.8   0.0   1   1     3e-06     0.022   14.1   0.0     2    25    33    56    32    61 0.93 PspC domain
YccV-like            PF08755.6    100 sp|Q7CHM0|HSPQ_YERPE -            105     1e-25   89.5   0.0   1   1   7.8e-30   1.1e-25   89.3   0.0     2    99     4   101     3   102 0.96 Hemimethylated DNA-binding protein YccV like
HSP90                PF00183.13   531 sp|P58482|HTPG_YERPE -            622  2.8e-118  395.6   4.3   1   2   1.5e-05     0.054   11.8   0.0     1    37   186   222   186   224 0.93 Hsp90 protein
HSP90                PF00183.13   531 sp|P58482|HTPG_YERPE -            622  2.8e-118  395.6   4.3   2   2  4.9e-119  1.8e-115  386.3   2.2    83   491   219   620   216   622 0.94 Hsp90 protein
HATPase_c_3          PF13589.1    137 sp|P58482|HTPG_YERPE -            622   1.9e-13   50.2   0.1   1   1   1.3e-16   4.8e-13   48.9   0.1     2   123    26   171    25   183 0.76 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c            PF02518.21   111 sp|P58482|HTPG_YERPE -            622   4.3e-11   42.5   0.1   1   1   2.3e-14   8.6e-11   41.5   0.1     5   109    31   181    27   183 0.86 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PE                   PF00934.15    94 sp|P58482|HTPG_YERPE -            622      0.11   12.6   0.1   1   1   2.9e-05      0.11   12.6   0.1    35    62   532   559   524   565 0.88 PE family
Peptidase_M48        PF01435.13   226 sp|Q8ZFJ7|HTPX_YERPE -            293     3e-39  134.8   0.1   1   1   1.9e-42   3.9e-39  134.5   0.1     8   226    57   285     9   285 0.84 Peptidase family M48
Peptidase_M56        PF05569.6    299 sp|Q8ZFJ7|HTPX_YERPE -            293   8.7e-05   21.6   0.0   1   1   7.5e-08   0.00016   20.7   0.0   179   220   116   157    46   165 0.75 BlaR1 peptidase M56
Peptidase_MA_2       PF13485.1    128 sp|Q8ZFJ7|HTPX_YERPE -            293    0.0015   18.6   0.0   1   1   1.4e-06    0.0029   17.6   0.0    18    44   126   152   103   163 0.77 Peptidase MA superfamily
Myc_target_1         PF15179.1    197 sp|Q8ZFJ7|HTPX_YERPE -            293    0.0033   17.0   0.0   1   1   4.3e-06     0.009   15.6   0.0    23    50   194   221   187   252 0.91 Myc target protein 1
Peptidase_M1         PF01433.15   390 sp|Q8ZFJ7|HTPX_YERPE -            293     0.082   11.9   0.0   1   1   5.4e-05      0.11   11.5   0.0   290   315   128   153    93   155 0.76 Peptidase family M1
DUF2201_N            PF13203.1    292 sp|Q8ZFJ7|HTPX_YERPE -            293     0.094   11.8   0.0   1   1   6.4e-05      0.14   11.3   0.0    38    72   111   145    85   158 0.81 Putative metallopeptidase domain
Lyase_aromatic       PF00221.14   473 sp|Q8ZA10|HUTH_YERPE -            510  9.2e-190  631.0   4.9   1   1  7.1e-194  1.1e-189  630.8   4.9     1   472     4   477     4   478 0.99 Aromatic amino acid lyase
Amidohydro_4         PF13147.1    304 sp|Q9ZC74|HUTI_YERPE -            406   9.4e-25   88.1   1.3   1   1   3.3e-28   1.2e-24   87.8   1.3     3   304    60   376    59   376 0.82 Amidohydrolase
Amidohydro_1         PF01979.15   333 sp|Q9ZC74|HUTI_YERPE -            406     7e-13   48.9   0.0   1   1   1.2e-14   4.3e-11   43.0   0.0     2   332    64   378    63   378 0.64 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|Q9ZC74|HUTI_YERPE -            406   7.8e-13   48.0   0.0   1   1   6.3e-16   2.4e-12   46.5   0.0     1    68    32   138    32   138 0.80 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|Q9ZC74|HUTI_YERPE -            406   2.3e-10   40.2   7.3   2   2   1.6e-12   5.8e-09   35.6   2.7   126   401   117   374    97   377 0.72 Amidohydrolase family
Urocanase            PF01175.13   546 sp|Q8ZA09|HUTU_YERPE -            563  8.2e-283  938.4   0.0   1   1  6.3e-287  9.4e-283  938.2   0.0     1   545    11   555    11   556 1.00 Urocanase
HSP20                PF00011.16   102 sp|Q8Z9V5|IBPA_YERPE -            137   8.7e-20   70.4   0.0   1   1   7.2e-24   1.1e-19   70.2   0.0     4   102    42   137    39   137 0.96 Hsp20/alpha crystallin family
HSP20                PF00011.16   102 sp|Q8Z9V6|IBPB_YERPE -            154   1.8e-15   56.6   0.0   1   1   1.5e-19   2.3e-15   56.3   0.0     3   101    39   134    37   135 0.93 Hsp20/alpha crystallin family
eIF-1a               PF01176.14    65 sp|P65115|IF1_YERPE  -             72   2.2e-28   97.4   0.0   1   1   3.3e-32   2.4e-28   97.3   0.0     1    65     5    70     5    70 0.98 Translation initiation factor 1A / IF-1
S1                   PF00575.18    74 sp|P65115|IF1_YERPE  -             72     0.019   15.0   0.1   1   1   3.1e-06     0.023   14.7   0.1     8    71     9    69     3    72 0.90 S1 RNA binding domain
GTP_EFTU             PF00009.22   188 sp|Q8ZBC2|IF2_YERPE  -            892   1.4e-42  145.2   1.0   2   2   1.1e-45   1.4e-42  145.2   1.0     3   185   393   553   391   556 0.95 Elongation factor Tu GTP binding domain
IF-2                 PF11987.3    109 sp|Q8ZBC2|IF2_YERPE  -            892   1.6e-41  140.6   1.6   1   1   4.1e-44   5.1e-41  138.9   0.6     2   109   675   782   674   782 0.99 Translation-initiation factor 2
IF2_N                PF04760.10    54 sp|Q8ZBC2|IF2_YERPE  -            892   4.7e-22   77.3   5.5   1   2   1.4e-09   1.7e-06   27.5   0.2     1    53     1    51     1    52 0.95 Translation initiation factor IF-2, N-terminal region
IF2_N                PF04760.10    54 sp|Q8ZBC2|IF2_YERPE  -            892   4.7e-22   77.3   5.5   2   2   8.7e-17   1.1e-13   50.6   1.3     2    54   314   364   313   364 0.97 Translation initiation factor IF-2, N-terminal region
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZBC2|IF2_YERPE  -            892   1.9e-18   66.3   3.3   1   2   7.9e-11   9.8e-08   32.0   0.1     1    73   581   643   581   644 0.95 Elongation factor Tu domain 2
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZBC2|IF2_YERPE  -            892   1.9e-18   66.3   3.3   2   2   2.3e-11   2.9e-08   33.7   0.6     1    73   812   879   812   880 0.97 Elongation factor Tu domain 2
IF2_assoc            PF08364.6     41 sp|Q8ZBC2|IF2_YERPE  -            892   1.5e-16   60.0   3.6   1   1   1.2e-19   1.5e-16   60.0   3.6     2    39    57    94    56    96 0.96 Bacterial translation initiation factor IF-2 associated region
MMR_HSR1             PF01926.18   116 sp|Q8ZBC2|IF2_YERPE  -            892   6.6e-08   32.5   3.2   2   2   7.5e-11   9.2e-08   32.0   0.1     2   116   396   501   395   501 0.78 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|Q8ZBC2|IF2_YERPE  -            892   2.7e-07   31.0   3.6   1   1   3.2e-10     4e-07   30.5   0.1     2   119   396   503   395   503 0.89 Miro-like protein
Ras                  PF00071.17   162 sp|Q8ZBC2|IF2_YERPE  -            892   1.1e-06   28.1   0.0   1   1   3.8e-09   4.7e-06   26.0   0.0     3   158   397   552   395   556 0.82 Ras family
PduV-EutP            PF10662.4    143 sp|Q8ZBC2|IF2_YERPE  -            892     6e-06   25.7   1.1   1   1   1.3e-08   1.6e-05   24.4   0.1     4   140   396   549   394   551 0.71 Ethanolamine utilisation - propanediol utilisation
Arf                  PF00025.16   175 sp|Q8ZBC2|IF2_YERPE  -            892   1.8e-05   24.0   0.0   1   1   4.2e-08   5.2e-05   22.5   0.0    18   171   397   550   386   554 0.82 ADP-ribosylation factor family
FeoB_N               PF02421.13   156 sp|Q8ZBC2|IF2_YERPE  -            892   0.00018   20.8   0.1   1   1   4.1e-07   0.00051   19.3   0.1     3   156   396   550   394   550 0.80 Ferrous iron transport protein B
Daxx                 PF03344.10   713 sp|Q8ZBC2|IF2_YERPE  -            892      0.28    9.6  34.6   1   1   0.00031      0.38    9.1  34.6   445   642    82   281    17   330 0.67 Daxx Family
IF3_N                PF05198.11    76 sp|Q8ZDW6|IF3_YERPE  -            183   4.5e-34  116.2   0.1   1   1   1.9e-37   7.2e-34  115.5   0.1     3    76    12    85    10    85 0.98 Translation initiation factor IF-3, N-terminal domain
IF3_C                PF00707.17    88 sp|Q8ZDW6|IF3_YERPE  -            183   1.8e-33  114.1   0.2   1   1   8.5e-37   3.2e-33  113.3   0.2     2    88    91   181    90   181 0.98 Translation initiation factor IF-3, C-terminal domain
DUF2303              PF10065.4    276 sp|Q8ZDW6|IF3_YERPE  -            183    0.0021   16.9   0.0   1   1   8.4e-07    0.0031   16.4   0.0   186   266    73   153    69   161 0.85 Uncharacterized conserved protein (DUF2303)
DUF461               PF04314.8    110 sp|Q8ZDW6|IF3_YERPE  -            183     0.019   14.6   0.0   1   1   1.6e-05     0.058   13.0   0.0    56   104    81   133    60   139 0.84 Protein of unknown function (DUF461)
IgaA                 PF07095.6    706 sp|P58722|IGAA_YERPE -            715         0 1217.5   0.2   1   1         0         0 1217.3   0.2     1   704     1   711     1   713 0.99 Intracellular growth attenuator protein IgaA
Bac_DNA_binding      PF00216.16    90 sp|Q8ZDX2|IHFA_YERPE -             98   6.7e-30  102.9   0.1   1   1     1e-33   7.4e-30  102.8   0.1     1    89     3    91     3    92 0.98 Bacterial DNA-binding protein
HU-DNA_bdg           PF14848.1    124 sp|Q8ZDX2|IHFA_YERPE -             98     0.015   15.0   0.0   1   2   1.3e-05     0.094   12.4   0.0    41    77    14    51     2    57 0.83 DNA-binding domain
Bac_DNA_binding      PF00216.16    90 sp|Q8ZGB1|IHFB_YERPE -             94   6.1e-29   99.8   0.0   1   1   1.8e-32   6.7e-29   99.7   0.0     1    90     1    91     1    91 0.97 Bacterial DNA-binding protein
DUF4496              PF14908.1    140 sp|Q8ZGB1|IHFB_YERPE -             94     0.063   13.1   0.0   1   1     2e-05     0.073   12.9   0.0     3    53    24    82    22    93 0.78 Domain of unknown function (DUF4496)
LigT_PEase           PF02834.11    87 sp|Q8ZGB1|IHFB_YERPE -             94     0.072   13.0   0.0   1   1   3.3e-05      0.12   12.3   0.0    44    84    20    59     5    61 0.86 LigT like Phosphoesterase
HU-DNA_bdg           PF14848.1    124 sp|Q8ZGB1|IHFB_YERPE -             94      0.15   11.7   0.0   1   1   9.5e-05      0.35   10.5   0.0    30    85     2    58     1    92 0.76 DNA-binding domain
IlvN                 PF07991.7    165 sp|Q8ZAC2|ILVC_YERPE -            492   1.7e-61  206.3   0.5   1   1   1.5e-64   2.8e-61  205.6   0.5     2   165    35   204    34   204 0.98 Acetohydroxy acid isomeroreductase, catalytic domain
IlvC                 PF01450.14   145 sp|Q8ZAC2|ILVC_YERPE -            492     6e-57  191.6   0.1   1   2   1.1e-19   2.1e-16   60.1   0.0     1   125   210   334   210   344 0.92 Acetohydroxy acid isomeroreductase, catalytic domain
IlvC                 PF01450.14   145 sp|Q8ZAC2|ILVC_YERPE -            492     6e-57  191.6   0.1   2   2   6.2e-41   1.1e-37  129.1   0.0    16   145   361   486   355   486 0.96 Acetohydroxy acid isomeroreductase, catalytic domain
2-Hacid_dh_C         PF02826.14   178 sp|Q8ZAC2|ILVC_YERPE -            492   4.6e-05   22.6   0.0   1   1   4.6e-08   8.6e-05   21.7   0.0    33   122    34   127     7   129 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_7        PF13241.1    103 sp|Q8ZAC2|ILVC_YERPE -            492    0.0012   19.0   0.0   1   1   1.8e-06    0.0034   17.6   0.0     5    77    35   115    33   123 0.82 Putative NAD(P)-binding
ApbA                 PF02558.11   151 sp|Q8ZAC2|ILVC_YERPE -            492     0.003   17.0   0.1   1   1     3e-06    0.0055   16.1   0.1     1    95    40   126    40   152 0.82 Ketopantoate reductase PanE/ApbA
AdoHcyase_NAD        PF00670.16   162 sp|Q8ZAC2|ILVC_YERPE -            492     0.018   14.8   0.1   1   1   2.2e-05      0.04   13.7   0.1    21   130    35   151    28   165 0.70 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
GFO_IDH_MocA         PF01408.17   120 sp|Q8ZAC2|ILVC_YERPE -            492     0.063   13.7   0.0   1   1   6.8e-05      0.13   12.8   0.0     2    81    39   117    38   123 0.80 Oxidoreductase family, NAD-binding Rossmann fold
OCD_Mu_crystall      PF02423.10   314 sp|Q8ZAC2|ILVC_YERPE -            492     0.076   11.7   0.0   1   1   7.5e-05      0.14   10.9   0.0   130   212    38   117    34   133 0.79 Ornithine cyclodeaminase/mu-crystallin family
ILVD_EDD             PF00920.16   521 sp|Q8ZAB3|ILVD_YERPE -            616  4.1e-191  635.9   3.1   1   1  3.2e-195  4.7e-191  635.7   3.1     1   521    34   607    34   607 0.94 Dehydratase family
IMPDH                PF00478.20   352 sp|Q0WD32|IMDH_YERPE -            487  1.4e-145  484.6   6.8   1   1  1.1e-148  1.7e-145  484.3   6.8     2   352     8   473     7   473 0.99 IMP dehydrogenase / GMP reductase domain
CBS                  PF00571.23    57 sp|Q0WD32|IMDH_YERPE -            487   1.8e-19   69.2   1.4   1   3   3.4e-11     5e-08   32.6   0.0     5    52    94   140    91   142 0.93 CBS domain
CBS                  PF00571.23    57 sp|Q0WD32|IMDH_YERPE -            487   1.8e-19   69.2   1.4   2   3   1.8e-11   2.7e-08   33.4   0.3     1    53   149   203   149   206 0.94 CBS domain
NMO                  PF03060.10   330 sp|Q0WD32|IMDH_YERPE -            487   6.8e-11   41.8  15.6   1   2   3.4e-07    0.0005   19.3   4.7     2   153    32   196    31   299 0.78 Nitronate monooxygenase
NMO                  PF03060.10   330 sp|Q0WD32|IMDH_YERPE -            487   6.8e-11   41.8  15.6   2   2   7.9e-08   0.00012   21.3   9.9   182   229   318   371   198   376 0.72 Nitronate monooxygenase
FMN_dh               PF01070.13   357 sp|Q0WD32|IMDH_YERPE -            487   9.6e-09   34.5   7.1   1   2   4.5e-11   6.7e-08   31.7   5.0   218   310   262   362   158   368 0.76 FMN-dependent dehydrogenase
His_biosynth         PF00977.16   229 sp|Q0WD32|IMDH_YERPE -            487   0.00029   20.2   3.7   1   1   3.8e-06    0.0056   15.9   3.5    74   223   220   364   195   368 0.73 Histidine biosynthesis protein
DHO_dh               PF01180.16   295 sp|Q0WD32|IMDH_YERPE -            487    0.0044   16.0   2.6   2   2   2.9e-06    0.0044   16.0   2.6   242   276   330   364   308   370 0.81 Dihydroorotate dehydrogenase
NanE                 PF04131.9    192 sp|Q0WD32|IMDH_YERPE -            487    0.0049   15.8   6.3   1   1   4.6e-05     0.068   12.1   6.3    56   178   233   366   229   371 0.71 Putative N-acetylmannosamine-6-phosphate epimerase
PK                   PF00224.16   348 sp|Q0WD32|IMDH_YERPE -            487    0.0074   14.9   0.8   2   3   8.9e-05      0.13   10.8   0.0     8    55   222   269   216   286 0.84 Pyruvate kinase, barrel domain
Glu_synthase         PF01645.12   368 sp|Q0WD32|IMDH_YERPE -            487     0.074   11.9  10.7   1   1   8.3e-06     0.012   14.5   6.8   243   304   305   362   270   365 0.77 Conserved region in glutamate synthase
ThiG                 PF05690.9    247 sp|Q0WD32|IMDH_YERPE -            487      0.62    9.0  14.4   2   2   1.9e-05     0.028   13.5   6.6   137   212   284   369   278   375 0.79 Thiazole biosynthesis protein ThiG
Pyrophosphatase      PF00719.14   156 sp|Q8ZB98|IPYR_YERPE -            175   4.1e-60  201.7   0.1   1   1   3.1e-64   4.6e-60  201.5   0.1     2   155    18   174    17   175 0.98 Inorganic pyrophosphatase
Fe-S_biosyn          PF01521.15   112 sp|Q8ZCS3|ISCA_YERPE -            107   2.3e-25   88.7   0.0   1   1   1.7e-29   2.5e-25   88.5   0.0     1   112     1   103     1   103 0.98 Iron-sulphur cluster biosynthesis
IspD                 PF01128.14   221 sp|Q8ZBP6|ISPD_YERPE -            241   5.1e-82  274.6   0.0   1   1   7.9e-86   5.8e-82  274.4   0.0     1   221    11   232    11   232 0.97 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3         PF12804.2    160 sp|Q8ZBP6|ISPD_YERPE -            241     3e-12   46.9   0.5   1   1   8.3e-16   6.2e-12   45.8   0.4     1   120    13   137    13   190 0.72 MobA-like NTP transferase domain
GHMP_kinases_N       PF00288.21    67 sp|Q8ZEY1|ISPE_YERPE -            299   5.6e-10   39.1   0.2   1   1   2.1e-13     1e-09   38.2   0.2     1    66    98   155    98   156 0.89 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|Q8ZEY1|ISPE_YERPE -            299   3.1e-06   27.3   0.0   2   2   2.2e-09   1.1e-05   25.5   0.0    23    78   216   267   197   273 0.83 GHMP kinases C terminal
DUF1127              PF06568.6     40 sp|Q8ZEY1|ISPE_YERPE -            299     0.049   13.0   0.3   1   1     2e-05     0.098   12.0   0.3    23    34   133   144   131   146 0.94 Domain of unknown function (DUF1127)
YgbB                 PF02542.11   157 sp|Q8ZBP7|ISPF_YERPE -            162     5e-67  224.6   0.0   1   1   3.8e-71   5.7e-67  224.4   0.0     1   155     1   157     1   159 0.96 YgbB family
GcpE                 PF04551.9    359 sp|P58672|ISPG_YERPE -            375  7.3e-126  419.7   0.3   1   1  1.1e-129  8.4e-126  419.5   0.3     2   357    13   355    12   357 0.98 GcpE protein
Borealin             PF10512.4    116 sp|P58672|ISPG_YERPE -            375     0.034   14.0   0.0   1   1   1.3e-05     0.096   12.6   0.0    54   106     2    53     1    62 0.82 Cell division cycle-associated protein 8
LYTB                 PF02401.13   281 sp|P58680|ISPH_YERPE -            317  3.9e-112  373.7   0.0   1   1    3e-116  4.4e-112  373.5   0.0     1   280     3   285     3   286 0.98 LytB protein
ADK                  PF00406.17   151 sp|O69172|KAD_YERPE  -            214   1.5e-59  200.1   0.1   1   1   6.2e-63   1.8e-59  199.9   0.1     1   149     5   185     5   187 0.99 Adenylate kinase
ADK_lid              PF05191.9     36 sp|O69172|KAD_YERPE  -            214   1.5e-15   56.5   0.0   1   1   9.8e-19   2.9e-15   55.6   0.0     1    36   123   158   123   158 0.99 Adenylate kinase, active site lid
AAA_17               PF13207.1    121 sp|O69172|KAD_YERPE  -            214   2.3e-08   34.8   0.1   1   1   1.1e-11   3.3e-08   34.3   0.1     1   107     2   120     2   196 0.65 AAA domain
AAA_33               PF13671.1    143 sp|O69172|KAD_YERPE  -            214   0.00011   22.1   0.0   1   1   3.5e-07    0.0011   18.9   0.0     2   121     3   126     3   138 0.67 AAA domain
AAA_18               PF13238.1    129 sp|O69172|KAD_YERPE  -            214     0.058   13.7   0.2   1   1   3.9e-05      0.12   12.7   0.1     1    27     3    36     3   131 0.71 AAA domain
peroxidase           PF00141.18   230 sp|Q9X6B0|KATG_YERPE -            737   9.1e-91  303.4   0.0   1   2   7.6e-56   1.1e-51  175.5   0.0    11   229    81   393    71   394 0.88 Peroxidase
peroxidase           PF00141.18   230 sp|Q9X6B0|KATG_YERPE -            737   9.1e-91  303.4   0.0   2   2   1.2e-40   1.7e-36  125.8   0.0     3   230   401   709   400   709 0.88 Peroxidase
Cytidylate_kin       PF02224.13   158 sp|Q8ZGB3|KCY_YERPE  -            230   6.4e-59  197.9   0.6   1   1   9.4e-62   7.7e-59  197.6   0.6     3   157    63   217    61   218 0.97 Cytidylate kinase
AAA_17               PF13207.1    121 sp|Q8ZGB3|KCY_YERPE  -            230   6.5e-16   59.2   0.0   1   1   2.5e-18   2.1e-15   57.6   0.0     1   120     7   134     7   135 0.84 AAA domain
Cytidylate_kin2      PF13189.1    179 sp|Q8ZGB3|KCY_YERPE  -            230   2.7e-07   30.6   0.0   1   1   7.1e-10   5.8e-07   29.5   0.0     1   155     7   187     7   191 0.78 Cytidylate kinase-like family
AAA_18               PF13238.1    129 sp|Q8ZGB3|KCY_YERPE  -            230   2.2e-05   24.7   0.2   1   1   2.4e-07    0.0002   21.6   0.2     1   110     8   159     8   189 0.61 AAA domain
SKI                  PF01202.17   158 sp|Q8ZGB3|KCY_YERPE  -            230   0.00057   19.7   0.2   1   2   5.7e-05     0.047   13.5   0.0     1    23    14    36    14    42 0.93 Shikimate kinase
AAA_33               PF13671.1    143 sp|Q8ZGB3|KCY_YERPE  -            230   0.00068   19.5   0.5   1   1   3.5e-06    0.0029   17.4   0.5     2    35     8    93     7   206 0.60 AAA domain
ABC_tran             PF00005.22   137 sp|Q8ZGB3|KCY_YERPE  -            230    0.0018   18.5   0.0   1   1     4e-06    0.0033   17.7   0.0    15    43     9    60     5   208 0.70 ABC transporter
AAA_30               PF13604.1    196 sp|Q8ZGB3|KCY_YERPE  -            230    0.0022   17.5   0.4   1   2   8.2e-05     0.068   12.7   0.0    19    60     6    53     1    62 0.81 AAA domain
ADK                  PF00406.17   151 sp|Q8ZGB3|KCY_YERPE  -            230    0.0045   16.8   0.0   1   1   1.3e-05     0.011   15.5   0.0     3    32    12    41    10    55 0.92 Adenylate kinase
MobB                 PF03205.9    140 sp|Q8ZGB3|KCY_YERPE  -            230     0.013   15.1   0.0   1   1   5.1e-05     0.042   13.5   0.0     1    48     6    58     6    71 0.80 Molybdopterin guanine dinucleotide synthesis protein B
AAA_22               PF13401.1    131 sp|Q8ZGB3|KCY_YERPE  -            230     0.015   15.4   0.0   1   1   3.7e-05     0.031   14.4   0.0     6    31     7    32     5   130 0.78 AAA domain
AAA                  PF00004.24   132 sp|Q8ZGB3|KCY_YERPE  -            230     0.021   15.0   0.0   1   1   0.00011     0.088   13.0   0.0     4    27    11    34     8    46 0.87 ATPase family associated with various cellular activities (AAA)
UPF0079              PF02367.12   123 sp|Q8ZGB3|KCY_YERPE  -            230     0.034   13.7   0.0   1   1   6.9e-05     0.057   13.0   0.0    15    40     5    30     1    61 0.92 Uncharacterised P-loop hydrolase UPF0079
AAA_19               PF13245.1     76 sp|Q8ZGB3|KCY_YERPE  -            230      0.04   13.6   1.9   1   1   5.2e-05     0.043   13.5   0.1    10    36     5    32     1    78 0.72 Part of AAA domain
PRK                  PF00485.13   194 sp|Q8ZGB3|KCY_YERPE  -            230     0.042   13.3   0.0   1   2   0.00045      0.37   10.3   0.0     1    30     7    36     7    68 0.76 Phosphoribulokinase / Uridine kinase family
ATP_bind_2           PF03668.10   284 sp|Q8ZGB3|KCY_YERPE  -            230     0.068   12.2   0.3   1   2   0.00062      0.51    9.3   0.0     3    71     7    80     5   119 0.71 P-loop ATPase protein family
DAHP_synth_1         PF00793.15   272 sp|Q8ZEX4|KDSA_YERPE -            284   3.2e-81  271.9   0.0   1   1   5.1e-85   3.8e-81  271.7   0.0     9   271    10   275     2   276 0.97 DAHP synthetase I family
GFO_IDH_MocA         PF01408.17   120 sp|Q8ZEX4|KDSA_YERPE -            284    0.0098   16.4   0.1   1   1   2.4e-06     0.017   15.5   0.1    40   114    82   160    73   166 0.84 Oxidoreductase family, NAD-binding Rossmann fold
CTP_transf_3         PF02348.14   217 sp|Q8ZGA4|KDSB_YERPE -            250   3.4e-67  226.2   0.0   1   1   5.5e-71     4e-67  226.0   0.0     1   217     4   221     4   221 0.97 Cytidylyltransferase
NTP_transf_3         PF12804.2    160 sp|Q8ZGA4|KDSB_YERPE -            250   6.6e-11   42.5   0.2   1   1   1.3e-14   9.5e-11   42.0   0.2    16   120    19   125    10   182 0.84 MobA-like NTP transferase domain
Hydrolase_3          PF08282.7    254 sp|Q8ZB47|KDSC_YERPE -            187   1.8e-11   44.0   0.0   2   2     2e-13   7.3e-10   38.8   0.0   180   243    94   157    90   167 0.93 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|Q8ZB47|KDSC_YERPE -            187   7.6e-06   26.4   0.0   1   1     5e-09   1.8e-05   25.2   0.0   143   215    68   136    59   136 0.87 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|Q8ZB47|KDSC_YERPE -            187     0.061   12.6   0.0   2   2   9.1e-05      0.34   10.1   0.0   163   216    98   151    95   159 0.91 Sucrose-6F-phosphate phosphohydrolase
FAM220               PF15487.1    278 sp|Q8ZB47|KDSC_YERPE -            187     0.073   12.4   0.0   1   1   2.5e-05     0.095   12.0   0.0   195   260    52   116    45   123 0.80 FAM220 family
SIS                  PF01380.17   131 sp|Q8D1Q8|KDSD_YERPE -            328   2.3e-28   98.3   0.0   1   1   6.8e-32   3.4e-28   97.8   0.0     2   131    46   177    45   177 0.97 SIS domain
CBS                  PF00571.23    57 sp|Q8D1Q8|KDSD_YERPE -            328   2.3e-20   72.0   2.2   2   3     1e-12   4.9e-09   35.8   0.2     1    54   206   261   206   263 0.97 CBS domain
CBS                  PF00571.23    57 sp|Q8D1Q8|KDSD_YERPE -            328   2.3e-20   72.0   2.2   3   3   2.5e-11   1.3e-07   31.3   0.5     1    54   273   325   273   327 0.96 CBS domain
SIS_2                PF13580.1    138 sp|Q8D1Q8|KDSD_YERPE -            328    0.0085   15.8   1.5   2   2   2.9e-05      0.14   11.8   0.0   101   137    94   130    90   131 0.90 SIS domain
KduI                 PF04962.7    262 sp|Q8ZFH8|KDUI_YERPE -            278   3.4e-32  111.5   0.0   1   1   2.7e-36     4e-32  111.3   0.0    14   260    37   272    24   274 0.79 KduI/IolB family
Na_H_Exchanger       PF00999.16   380 sp|Q8ZJC4|KEFB_YERPE -            602   3.2e-71  239.8  50.3   1   1   1.7e-74   4.3e-71  239.4  50.3     2   379    10   373     9   375 0.96 Sodium/hydrogen exchanger family
TrkA_N               PF02254.13   116 sp|Q8ZJC4|KEFB_YERPE -            602   2.7e-24   85.3   0.1   1   1   2.2e-27   5.4e-24   84.4   0.1     1   111   403   513   403   516 0.97 TrkA-N domain
2-Hacid_dh_C         PF02826.14   178 sp|Q8ZJC4|KEFB_YERPE -            602    0.0054   15.8   0.1   1   2   6.8e-06     0.017   14.2   0.1    32   109   396   482   371   514 0.68 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ApbA                 PF02558.11   151 sp|Q8ZJC4|KEFB_YERPE -            602     0.025   14.0   0.0   1   1   1.7e-05     0.042   13.2   0.0     1   106   403   514   403   554 0.80 Ketopantoate reductase PanE/ApbA
NAD_binding_10       PF13460.1    183 sp|Q8ZJC4|KEFB_YERPE -            602     0.031   14.2   0.0   1   1   2.3e-05     0.056   13.4   0.0     2    82   404   485   403   525 0.83 NADH(P)-binding
XdhC_C               PF13478.1    136 sp|Q8ZJC4|KEFB_YERPE -            602     0.034   14.4   0.2   1   2   5.5e-05      0.14   12.5   0.0     1   105   403   513   403   525 0.78 XdhC Rossmann domain
Flavodoxin_2         PF02525.12   199 sp|Q8ZJC5|KEFG_YERPE -            183   3.7e-40  137.5   0.1   1   1     6e-44   4.4e-40  137.3   0.1     2   198     7   174     6   176 0.92 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|Q8ZJC5|KEFG_YERPE -            183   1.8e-05   24.2   0.0   1   1   4.3e-09   3.2e-05   23.4   0.0     2   121     7   118     6   123 0.70 NADPH-dependent FMN reductase
Guanylate_kin        PF00625.16   183 sp|Q8ZJQ2|KGUA_YERPE -            207   9.9e-67  223.9   0.0   1   1   1.1e-69   1.1e-66  223.7   0.0     2   183     4   186     3   186 0.98 Guanylate kinase
AAA_33               PF13671.1    143 sp|Q8ZJQ2|KGUA_YERPE -            207   3.8e-06   26.8   0.0   1   1   8.2e-09   8.1e-06   25.7   0.0     3   137     8   157     6   162 0.73 AAA domain
DUF258               PF03193.11   161 sp|Q8ZJQ2|KGUA_YERPE -            207    0.0015   17.7   0.0   1   1   2.7e-06    0.0027   16.9   0.0    34    79     3    43     1    55 0.83 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|Q8ZJQ2|KGUA_YERPE -            207    0.0019   18.3   0.3   1   1   1.2e-05     0.012   15.7   0.3     5    35     5    35     1   194 0.80 AAA domain
ABC_tran             PF00005.22   137 sp|Q8ZJQ2|KGUA_YERPE -            207    0.0037   17.5   0.0   1   1   5.2e-06    0.0051   17.0   0.0    10    80     3    89     1   159 0.65 ABC transporter
AAA_18               PF13238.1    129 sp|Q8ZJQ2|KGUA_YERPE -            207    0.0066   16.7   0.0   1   1   3.3e-05     0.033   14.5   0.0     3   118     9   144     8   157 0.69 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZJQ2|KGUA_YERPE -            207     0.013   15.4   0.8   1   1   5.4e-05     0.053   13.4   0.8    25    47     5    27     3   201 0.85 AAA ATPase domain
AAA_25               PF13481.1    194 sp|Q8ZJQ2|KGUA_YERPE -            207     0.027   13.8   1.1   1   2   0.00022      0.22   10.9   0.1    31    54     2    25     1    28 0.90 AAA domain
cobW                 PF02492.14   178 sp|Q8ZJQ2|KGUA_YERPE -            207     0.057   12.8   0.0   1   1   9.6e-05     0.095   12.1   0.0     3   123     7   126     5   169 0.68 CobW/HypB/UreG, nucleotide-binding domain
MMR_HSR1             PF01926.18   116 sp|Q8ZJQ2|KGUA_YERPE -            207     0.071   13.0   0.0   1   1   0.00013      0.13   12.2   0.0     9    37    14    44     9   124 0.67 50S ribosome-binding GTPase
Viral_helicase1      PF01443.13   234 sp|Q8ZJQ2|KGUA_YERPE -            207     0.075   12.5   0.0   1   1    0.0001       0.1   12.1   0.0     2    34     8    43     7    75 0.71 Viral (Superfamily 1) RNA helicase
Miro                 PF08477.8    119 sp|Q8ZJQ2|KGUA_YERPE -            207     0.077   13.4   0.0   1   1   0.00012      0.12   12.8   0.0     8    41    13    45     8   124 0.83 Miro-like protein
AAA_17               PF13207.1    121 sp|Q8ZJQ2|KGUA_YERPE -            207      0.09   13.5   0.1   1   1   0.00022      0.21   12.3   0.1     2    85     7    89     6   199 0.64 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZJQ2|KGUA_YERPE -            207      0.13   11.8   0.1   1   1   0.00027      0.27   10.8   0.1    26    43     7    24     2    27 0.81 P-loop containing region of AAA domain
Adeno_IVa2           PF02456.10   370 sp|Q8ZJQ2|KGUA_YERPE -            207      0.17   10.4   0.0   1   1   0.00028      0.28    9.7   0.0    88   113     5    30     1    44 0.84 Adenovirus IVa2 protein
GHMP_kinases_N       PF00288.21    67 sp|Q8ZIN5|KHSE_YERPE -            309   2.1e-16   59.7   0.3   1   1   6.4e-20   4.8e-16   58.5   0.3     3    67    85   150    83   150 0.95 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|Q8ZIN5|KHSE_YERPE -            309   1.1e-09   38.3   0.0   1   1   1.5e-13   1.1e-09   38.3   0.0     2    83   211   287   210   289 0.89 GHMP kinases C terminal
TK                   PF00265.13   176 sp|Q8ZEJ1|KITH_YERPE -            196   3.7e-59  199.2   0.0   1   1   5.7e-63   4.2e-59  199.0   0.0     1   176     2   186     2   186 0.97 Thymidine kinase
AAA_22               PF13401.1    131 sp|Q8ZEJ1|KITH_YERPE -            196      0.03   14.4   0.0   1   1   7.6e-06     0.057   13.5   0.0    16   121    14   113     5   120 0.71 AAA domain
Pribosyltran_N       PF13793.1    116 sp|Q8ZEY2|KPRS_YERPE -            315     5e-49  164.8   0.2   1   2   1.5e-50   4.3e-47  158.6   0.0     1   116     4   121     4   121 0.98 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyl_synth       PF14572.1    184 sp|Q8ZEY2|KPRS_YERPE -            315   9.2e-31  107.0   0.7   1   1   6.4e-34   1.9e-30  105.9   0.5    74   183   204   313   189   314 0.96 Phosphoribosyl synthetase-associated domain
Pribosyltran         PF00156.22   125 sp|Q8ZEY2|KPRS_YERPE -            315   1.9e-16   59.8   0.2   1   1   1.8e-19   5.3e-16   58.4   0.2    18   119   153   244   148   250 0.89 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|Q8ZEY2|KPRS_YERPE -            315   0.00054   19.2   0.0   1   1     3e-07    0.0009   18.5   0.0   109   152   201   244   172   277 0.68 Uracil phosphoribosyltransferase
PRTase_2             PF15609.1    191 sp|Q8ZEY2|KPRS_YERPE -            315     0.055   12.7   0.0   1   1   3.2e-05     0.096   11.9   0.0   123   150   215   242   199   264 0.83 Phosphoribosyl transferase
Thymidylate_kin      PF02223.12   186 sp|O69169|KTHY_YERPE -            212   7.6e-61  204.7   0.0   1   1   3.5e-64   8.7e-61  204.5   0.0     1   186     8   198     8   198 0.96 Thymidylate kinase
AAA_28               PF13521.1    163 sp|O69169|KTHY_YERPE -            212   0.00086   19.2   0.0   1   1   4.6e-07    0.0011   18.9   0.0     2   152     6   172     5   187 0.60 AAA domain
AAA_33               PF13671.1    143 sp|O69169|KTHY_YERPE -            212    0.0017   18.2   0.0   1   1     2e-06     0.005   16.7   0.0     2   140     6   172     5   175 0.72 AAA domain
AAA_30               PF13604.1    196 sp|O69169|KTHY_YERPE -            212    0.0055   16.2   0.0   1   1   4.3e-06     0.011   15.3   0.0    19    50     4    35     1    61 0.87 AAA domain
AAA_29               PF13555.1     62 sp|O69169|KTHY_YERPE -            212     0.036   13.5   0.0   1   1   2.5e-05     0.061   12.8   0.0    24    51     4    31     1    38 0.85 P-loop containing region of AAA domain
K_trans              PF02705.11   534 sp|Q8ZJT0|KUP_YERPE  -            622  4.4e-212  705.1  23.1   1   1  3.5e-216  5.1e-212  704.9  23.1     2   534    14   544    13   544 0.99 K+ potassium transporter
LamB                 PF02264.10   398 sp|Q8ZAS9|LAMB1_YERPE -            423  6.2e-158  526.0  19.4   1   1  4.7e-162    7e-158  525.8  19.4     1   398    27   423    27   423 0.97 LamB porin
LamB                 PF02264.10   398 sp|Q8ZHP0|LAMB2_YERPE -            419   1.8e-99  333.5  15.7   1   1  2.8e-103   2.1e-99  333.3  15.7     1   398    29   419    29   419 0.92 LamB porin
Asn_synthase         PF00733.16   255 sp|Q8ZHP0|LAMB2_YERPE -            419      0.12   11.7   0.0   1   1   2.2e-05      0.16   11.4   0.0   120   166   233   279   211   372 0.80 Asparagine synthase
AMP-binding          PF00501.23   417 sp|Q8ZES9|LCFA_YERPE -            562   2.3e-98  329.3   0.0   1   1  4.1e-102     3e-98  328.9   0.0     1   416    29   460    29   461 0.81 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|Q8ZES9|LCFA_YERPE -            562   2.1e-14   54.2   3.0   2   2   9.6e-18   7.1e-14   52.5   0.6     1    73   469   543   469   543 0.93 AMP-binding enzyme C-terminal domain
FHIPEP               PF00771.15   658 sp|P69955|LCRD_YERPE -            704  1.5e-243  809.9   9.3   1   1  1.2e-247  1.7e-243  809.7   9.3     1   658    26   696    26   696 0.95 FHIPEP family
TPR_3                PF07720.7     36 sp|P21207|LCRH_YERPE -            168   6.6e-11   41.7  10.5   1   2   1.4e-11   1.8e-08   34.0   3.4     1    36    36    69    36    69 0.97 Tetratricopeptide repeat
TPR_3                PF07720.7     36 sp|P21207|LCRH_YERPE -            168   6.6e-11   41.7  10.5   2   2   0.00018      0.23   11.3   0.1     7    32    76    99    72   102 0.83 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P21207|LCRH_YERPE -            168   3.4e-08   33.9   1.4   1   2   1.1e-08   1.3e-05   25.6   0.1     1    53    40    93    40   110 0.91 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P21207|LCRH_YERPE -            168   1.3e-06   27.9   2.0   1   2   9.6e-09   1.2e-05   24.8   0.7     4    62    37    94    34    98 0.94 TPR repeat
Apc3                 PF12895.2     84 sp|P21207|LCRH_YERPE -            168   3.7e-06   26.9   1.1   2   2   2.9e-08   3.6e-05   23.8   0.2     2    81    49   127    48   130 0.92 Anaphase-promoting complex, cyclosome, subunit 3
TPR_2                PF07719.12    34 sp|P21207|LCRH_YERPE -            168   1.1e-05   24.9   8.7   1   3   3.8e-06    0.0047   16.7   0.4     4    31    39    66    37    69 0.90 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P21207|LCRH_YERPE -            168   2.5e-05   24.5   2.8   1   3    0.0005      0.62   10.4   0.1    14    51    28    62     6    71 0.82 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P21207|LCRH_YERPE -            168   2.5e-05   24.5   2.8   2   3   0.00019      0.24   11.7   0.1     3    45    48    90    46    94 0.92 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P21207|LCRH_YERPE -            168   2.5e-05   24.5   2.8   3   3    0.0001      0.13   12.6   0.5     4    59    83   138    82   147 0.73 Tetratricopeptide repeat
TPR_1                PF00515.23    34 sp|P21207|LCRH_YERPE -            168   0.00027   20.3   8.2   3   4   1.2e-05     0.014   14.9   0.1     4    24    73    93    70    95 0.90 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P21207|LCRH_YERPE -            168   0.00051   19.9   4.3   1   3    0.0004      0.49   10.3   0.1    20    70    10    60     6    65 0.81 Tetratricopeptide repeat
TPR_9                PF13371.1     73 sp|P21207|LCRH_YERPE -            168      0.14   12.0   0.9   2   2   0.00021      0.26   11.1   0.1     7    54    48    95    46   105 0.94 Tetratricopeptide repeat
HTH_Tnp_1            PF01527.15    76 sp|P69961|LCRS_YERPE -             88   5.7e-19   67.8   0.2   1   1   1.4e-22   6.8e-19   67.6   0.2     1    75     1    71     1    72 0.96 Transposase
HTH_23               PF13384.1     50 sp|P69961|LCRS_YERPE -             88   0.00041   19.8   0.0   1   1   1.7e-07   0.00085   18.8   0.0     8    47    12    49     7    52 0.82 Homeodomain-like domain
HTH_28               PF13518.1     52 sp|P69961|LCRS_YERPE -             88    0.0012   18.7   0.1   1   1   3.5e-07    0.0017   18.2   0.1     3    37    12    46    10    61 0.91 Helix-turn-helix domain
LepA_C               PF06421.7    108 sp|Q8ZD74|LEPA_YERPE -            599   1.7e-51  172.6   3.5   1   1   1.8e-54   2.9e-51  171.8   3.5     1   107   487   593   487   594 0.99 GTP-binding protein LepA C-terminus
GTP_EFTU             PF00009.22   188 sp|Q8ZD74|LEPA_YERPE -            599   3.2e-51  173.4   0.0   1   1   3.3e-54   5.4e-51  172.7   0.0     1   187     2   181     2   182 0.94 Elongation factor Tu GTP binding domain
EFG_C                PF00679.19    89 sp|Q8ZD74|LEPA_YERPE -            599   1.1e-19   70.0   0.0   1   1   1.4e-22   2.3e-19   69.0   0.0     2    86   399   483   398   486 0.95 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZD74|LEPA_YERPE -            599   1.5e-08   34.6   0.2   1   1   1.9e-11   3.1e-08   33.5   0.2     1    74   205   275   205   275 0.84 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|Q8ZD74|LEPA_YERPE -            599   4.3e-05   23.4   0.0   1   2   1.7e-07   0.00028   20.8   0.0     8   116    13   132     6   132 0.64 50S ribosome-binding GTPase
EFG_II               PF14492.1     75 sp|Q8ZD74|LEPA_YERPE -            599   9.2e-05   22.2   0.0   1   1     2e-07   0.00033   20.4   0.0     4    73   293   365   291   367 0.83 Elongation Factor G, domain II
Ras                  PF00071.17   162 sp|Q8ZD74|LEPA_YERPE -            599    0.0003   20.1   0.0   1   1   3.2e-07   0.00053   19.4   0.0    30   160    52   180    42   182 0.78 Ras family
PduV-EutP            PF10662.4    143 sp|Q8ZD74|LEPA_YERPE -            599     0.018   14.5   0.0   1   1   2.4e-05     0.039   13.4   0.0    24   141    59   176    51   178 0.67 Ethanolamine utilisation - propanediol utilisation
SRPRB                PF09439.5    181 sp|Q8ZD74|LEPA_YERPE -            599     0.043   13.0   0.0   1   1   6.4e-05      0.11   11.7   0.0    35    84    55   103    34   134 0.78 Signal recognition particle receptor beta subunit
HMGL-like            PF00682.14   237 sp|Q8ZIG8|LEU1_YERPE -            520   6.9e-92  307.3   1.9   1   1   1.3e-95   9.5e-92  306.9   1.9     1   236    13   251    13   252 0.99 HMGL-like
LeuA_dimer           PF08502.5    133 sp|Q8ZIG8|LEU1_YERPE -            520   3.2e-40  137.0   0.1   1   1   1.1e-43   7.9e-40  135.7   0.1     1   133   369   500   369   500 0.98 LeuA allosteric (dimerisation) domain
Iso_dh               PF00180.15   348 sp|Q8ZIG9|LEU3_YERPE -            363  1.1e-135  452.0   0.0   1   1  8.4e-140  1.3e-135  451.9   0.0     1   348     6   355     6   355 0.98 Isocitrate/isopropylmalate dehydrogenase
Aconitase            PF00330.15   465 sp|Q8ZIH0|LEUC_YERPE -            476  1.2e-189  630.6   0.2   1   1  9.2e-194  1.4e-189  630.4   0.2     1   465    10   463    10   463 0.99 Aconitase family (aconitate hydratase)
Aconitase_C          PF00694.14   131 sp|Q8ZIH1|LEUD_YERPE -            200   1.3e-42  145.0   0.0   1   1   1.2e-46   1.8e-42  144.5   0.0     1   130     1   125     1   126 0.97 Aconitase C-terminal domain
LexA_DNA_bind        PF01726.11    65 sp|Q8ZJ16|LEXA_YERPE -            202   1.2e-29  101.6   0.1   1   1     9e-33   2.2e-29  100.7   0.1     1    65     1    65     1    65 0.99 LexA DNA binding domain
Peptidase_S24        PF00717.18    70 sp|Q8ZJ16|LEXA_YERPE -            202   6.8e-16   57.6   0.4   1   1   4.1e-19     1e-15   57.1   0.4     1    68   114   180   114   182 0.96 Peptidase S24-like
Rrf2                 PF02082.15    83 sp|Q8ZJ16|LEXA_YERPE -            202   0.00068   19.7   0.0   1   1   6.4e-07    0.0016   18.5   0.0    23    72    23    73    12    74 0.87 Transcriptional regulator
HTH_24               PF13412.1     48 sp|Q8ZJ16|LEXA_YERPE -            202   0.00075   18.8   0.0   1   2   1.7e-06    0.0043   16.4   0.0    19    48    27    57    26    57 0.96 Winged helix-turn-helix DNA-binding
HTH_20               PF12840.2     61 sp|Q8ZJ16|LEXA_YERPE -            202     0.002   17.9   0.0   1   1   2.1e-06    0.0051   16.5   0.0    19    57    19    59     2    60 0.86 Helix-turn-helix domain
HTH_Crp_2            PF13545.1     76 sp|Q8ZJ16|LEXA_YERPE -            202     0.058   13.1   0.0   1   1   5.8e-05      0.14   11.9   0.0    27    61    24    59    11    73 0.83 Crp-like helix-turn-helix domain
Leu_Phe_trans        PF03588.9    173 sp|Q8ZGD2|LFTR_YERPE -            236   2.1e-69  232.1   0.0   1   1   1.7e-73   2.5e-69  231.8   0.0     3   173    36   204    34   204 0.98 Leucyl/phenylalanyl-tRNA protein transferase
LGT                  PF01790.13   256 sp|Q8ZHV0|LGT_YERPE  -            290   1.4e-93  312.5  14.0   1   1   2.1e-97   1.6e-93  312.3  14.0     1   255    11   281    11   282 0.97 Prolipoprotein diacylglyceryl transferase
DNA_ligase_aden      PF01653.13   315 sp|Q7CLB2|LIGB_YERPE -            567   8.3e-49  166.2   0.0   1   1   5.4e-52   1.2e-48  165.7   0.0     4   314    38   315    35   316 0.93 NAD-dependent DNA ligase adenylation domain
DNA_ligase_OB        PF03120.11    82 sp|Q7CLB2|LIGB_YERPE -            567   2.5e-17   62.3   0.2   1   1   2.1e-20   4.5e-17   61.4   0.2     2    77   319   394   318   400 0.93 NAD-dependent DNA ligase OB-fold domain
DUF3701              PF12482.3     96 sp|Q7CLB2|LIGB_YERPE -            567   3.3e-05   23.5   0.3   3   3   2.5e-05     0.054   13.2   0.1    42    75   515   547   496   561 0.80 Phage integrase protein
HHH_2                PF12826.2     64 sp|Q7CLB2|LIGB_YERPE -            567   0.00033   20.4   0.0   1   2   0.00011      0.22   11.4   0.0    33    61   465   493   462   495 0.91 Helix-hairpin-helix motif
HHH                  PF00633.18    30 sp|Q7CLB2|LIGB_YERPE -            567    0.0047   16.5   0.0   1   1   5.9e-06     0.013   15.2   0.0     9    28   465   484   465   485 0.94 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|Q7CLB2|LIGB_YERPE -            567     0.017   15.2   0.0   1   1   3.4e-05     0.073   13.2   0.0    30    58   456   487   370   489 0.83 Helix-hairpin-helix domain
Radical_SAM          PF04055.16   166 sp|Q8ZDH0|LIPA_YERPE -            321   2.3e-16   60.4   0.0   1   1   6.6e-20   3.3e-16   59.9   0.0     4   165    91   251    88   252 0.89 Radical SAM superfamily
Alpha_L_fucos        PF01120.12   347 sp|Q8ZDH0|LIPA_YERPE -            321     0.069   12.0   0.0   1   1   2.5e-05      0.12   11.2   0.0    88   114   110   136   106   142 0.90 Alpha-L-fucosidase
Herpes_U30           PF04523.8    887 sp|Q8ZDH0|LIPA_YERPE -            321      0.23    8.8   0.0   1   1   6.6e-05      0.32    8.3   0.0   301   357   247   306   240   313 0.93 Herpes virus tegument protein U30
BPL_LplA_LipB        PF03099.14   125 sp|Q8ZDG9|LIPB_YERPE -            233   2.6e-17   63.0   0.0   1   1   2.6e-21   3.9e-17   62.4   0.0    17   125    63   163    50   163 0.88 Biotin/lipoate A/B protein ligase family
FMN_dh               PF01070.13   357 sp|Q8ZFV8|LLDD_YERPE -            381  4.5e-126  420.4   0.1   1   1  3.5e-129  5.7e-126  420.1   0.1     1   355    13   375    13   377 0.97 FMN-dependent dehydrogenase
IMPDH                PF00478.20   352 sp|Q8ZFV8|LLDD_YERPE -            381   2.5e-05   23.3   3.5   1   2   4.1e-08   6.8e-05   21.9   2.1   199   252   289   341   235   347 0.78 IMP dehydrogenase / GMP reductase domain
NMO                  PF03060.10   330 sp|Q8ZFV8|LLDD_YERPE -            381   5.4e-05   22.4   3.0   1   1     5e-08   8.2e-05   21.8   3.0   138   224   248   334   242   361 0.91 Nitronate monooxygenase
IGPS                 PF00218.16   254 sp|Q8ZFV8|LLDD_YERPE -            381   5.7e-05   22.3   0.0   1   1   6.3e-08    0.0001   21.4   0.0   167   242   255   333   243   341 0.87 Indole-3-glycerol phosphate synthase
Glu_synthase         PF01645.12   368 sp|Q8ZFV8|LLDD_YERPE -            381   0.00017   20.6   0.8   1   1   1.7e-07   0.00028   19.9   0.8   268   310   294   336   266   340 0.82 Conserved region in glutamate synthase
ThiG                 PF05690.9    247 sp|Q8ZFV8|LLDD_YERPE -            381   0.00059   18.9   1.0   2   2   7.9e-05      0.13   11.3   0.6   163   210   286   335   280   347 0.83 Thiazole biosynthesis protein ThiG
His_biosynth         PF00977.16   229 sp|Q8ZFV8|LLDD_YERPE -            381     0.011   15.0   0.2   2   2   0.00012      0.19   10.9   0.1    67   106   292   333   279   342 0.68 Histidine biosynthesis protein
PcrB                 PF01884.12   231 sp|Q8ZFV8|LLDD_YERPE -            381     0.013   14.7   1.2   1   2   0.00041      0.68    9.1   0.1   190   212   252   274   245   276 0.92 PcrB family
DHO_dh               PF01180.16   295 sp|Q8ZFV8|LLDD_YERPE -            381     0.014   14.3   0.3   1   1   1.4e-05     0.022   13.7   0.3   234   279   290   335   276   342 0.91 Dihydroorotate dehydrogenase
CN_hydrolase         PF00795.17   186 sp|Q8D124|LNT_YERPE  -            515   1.2e-21   76.8   0.1   1   2   7.1e-25   3.5e-21   75.4   0.0     2   186   224   413   223   413 0.88 Carbon-nitrogen hydrolase
TruB_C               PF09142.6     56 sp|Q8D124|LNT_YERPE  -            515    0.0047   16.5   0.0   1   1     2e-06    0.0098   15.5   0.0    12    40   433   461   429   470 0.92 tRNA Pseudouridine synthase II, C terminal
DUF1206              PF06724.6     73 sp|Q8D124|LNT_YERPE  -            515     0.031   14.0   1.3   2   2   3.2e-05      0.16   11.7   0.0    45    72   487   514   485   515 0.94 Domain of Unknown Function (DUF1206)
LolA                 PF03548.10   165 sp|Q8ZGC6|LOLA_YERPE -            202     2e-56  190.1   2.2   1   1   1.6e-60   2.3e-56  189.9   2.2     1   165    32   191    32   191 0.99 Outer membrane lipoprotein carrier protein LolA
LolB                 PF03550.9    157 sp|Q8ZEY0|LOLB_YERPE -            207     8e-55  184.7   2.2   1   1   1.4e-58     1e-54  184.3   2.2     2   157    49   204    48   204 0.99 Outer membrane lipoprotein LolB
DUF1410              PF07198.6     66 sp|Q8ZEY0|LOLB_YERPE -            207      0.12   12.7   0.1   1   1     5e-05      0.37   11.1   0.1    41    61   145   165   141   168 0.90 Protein of unknown function (DUF1410)
ABC_tran             PF00005.22   137 sp|Q8ZFR4|LOLD_YERPE -            234   5.2e-37  127.2   0.0   1   1   1.2e-39     8e-37  126.5   0.0     1   136    26   174    26   175 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZFR4|LOLD_YERPE -            234     1e-10   42.0   0.0   1   2   6.4e-06    0.0043   17.0   0.0     2    24    39    61    38   104 0.76 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZFR4|LOLD_YERPE -            234     1e-10   42.0   0.0   2   2   7.8e-08   5.3e-05   23.3   0.0   234   299   144   207   133   211 0.92 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZFR4|LOLD_YERPE -            234   3.1e-07   29.8   0.4   1   1   2.8e-09   1.9e-06   27.3   0.4    26   212    38   220    26   226 0.82 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|Q8ZFR4|LOLD_YERPE -            234   0.00033   20.1   0.0   1   1     1e-06   0.00067   19.1   0.0    16    40    30    53    24    56 0.82 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZFR4|LOLD_YERPE -            234   0.00038   20.5   4.7   1   1   9.3e-06    0.0063   16.5   4.7    18   171    30   220    12   231 0.57 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|Q8ZFR4|LOLD_YERPE -            234   0.00059   19.7   0.1   1   1   1.6e-05     0.011   15.6   0.1    23    88   137   189   123   191 0.74 Putative exonuclease SbcCD, C subunit
AAA_33               PF13671.1    143 sp|Q8ZFR4|LOLD_YERPE -            234   0.00075   19.3   0.3   1   1   7.5e-06     0.005   16.7   0.3     2   110    39   207    38   225 0.72 AAA domain
DUF258               PF03193.11   161 sp|Q8ZFR4|LOLD_YERPE -            234    0.0019   17.4   0.1   1   1   4.3e-06    0.0029   16.8   0.1    25    59    25    60    12    85 0.81 Protein of unknown function, DUF258
AAA_25               PF13481.1    194 sp|Q8ZFR4|LOLD_YERPE -            234    0.0028   17.0   0.1   1   2   2.2e-05     0.015   14.7   0.0    30    51    33    54    25    83 0.86 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|Q8ZFR4|LOLD_YERPE -            234    0.0089   15.5   0.0   1   1   2.6e-05     0.018   14.5   0.0    30    56    28    54    20    56 0.84 FtsK/SpoIIIE family
AAA_10               PF12846.2    304 sp|Q8ZFR4|LOLD_YERPE -            234     0.023   14.1   0.2   1   1   5.8e-05     0.039   13.3   0.2     3    21    38    56    36    70 0.85 AAA-like domain
AAA_17               PF13207.1    121 sp|Q8ZFR4|LOLD_YERPE -            234     0.026   15.3   0.5   1   1   5.3e-05     0.035   14.9   0.5     3    20    40    57    38   222 0.88 AAA domain
Miro                 PF08477.8    119 sp|Q8ZFR4|LOLD_YERPE -            234     0.043   14.3   0.0   1   1   0.00012     0.079   13.4   0.0     3    25    40    62    39    98 0.77 Miro-like protein
AAA_23               PF13476.1    202 sp|Q8ZFR4|LOLD_YERPE -            234     0.046   14.0   0.0   1   1   0.00011     0.077   13.3   0.0    13    36    29    53    20    57 0.80 AAA domain
AAA_22               PF13401.1    131 sp|Q8ZFR4|LOLD_YERPE -            234     0.056   13.5   1.2   1   1   0.00037      0.25   11.5   1.2     5    24    37    56    33   217 0.91 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZFR4|LOLD_YERPE -            234     0.057   13.7   0.1   1   1   0.00045      0.31   11.3   0.0     2    19    40    57    40    96 0.81 AAA domain
DUF87                PF01935.12   229 sp|Q8ZFR4|LOLD_YERPE -            234     0.061   13.1   0.1   1   1   0.00017      0.11   12.2   0.1    26    43    39    56    32    57 0.92 Domain of unknown function DUF87
NACHT                PF05729.7    166 sp|Q8ZFR4|LOLD_YERPE -            234      0.12   12.0   0.8   1   1   0.00032      0.22   11.1   0.4     2    18    38    54    37    58 0.90 NACHT domain
Pox_A32              PF04665.7    241 sp|Q8ZFR4|LOLD_YERPE -            234      0.16   11.2   0.0   1   1   0.00041      0.28   10.4   0.0    16    32    39    55    20    61 0.85 Poxvirus A32 protein
MobB                 PF03205.9    140 sp|Q8ZFR4|LOLD_YERPE -            234      0.17   11.5   0.0   1   1   0.00043      0.29   10.8   0.0     3    18    39    54    37    57 0.88 Molybdopterin guanine dinucleotide synthesis protein B
His_leader           PF08047.6     16 sp|Q8D079|LPHI_YERPE -             15     2e-09   36.6  18.8   1   1   2.7e-13     2e-09   36.6  18.8     1    16     1    15     1    15 0.99 Histidine operon leader peptide
Tet_res_leader       PF08050.7     20 sp|Q8D079|LPHI_YERPE -             15      0.23   11.1   0.4   1   1   3.3e-05      0.25   11.0   0.4     6    11     1     6     1     8 0.84 Tetracycline resistance leader peptide
Lip_prot_lig_C       PF10437.4     86 sp|Q8ZDY2|LPLA_YERPE -            338   1.8e-23   81.9   0.0   2   2   6.9e-27   5.1e-23   80.5   0.0     1    86   248   333   248   333 0.98 Bacterial lipoate protein ligase C-terminus
BPL_LplA_LipB        PF03099.14   125 sp|Q8ZDY2|LPLA_YERPE -            338   8.8e-22   77.4   0.0   1   1   2.1e-25   1.5e-21   76.6   0.0     1   125    46   158    46   158 0.95 Biotin/lipoate A/B protein ligase family
MFS_1                PF07690.11   352 sp|Q7CGZ2|LPLT_YERPE -            406   4.3e-16   58.5  45.3   1   2   2.9e-20   4.3e-16   58.5  45.3     1   337    19   344    19   374 0.74 Major Facilitator Superfamily
DUF3897              PF13036.1    180 sp|Q7CJ14|LPOB_YERPE -            191   1.3e-48  165.0   0.0   1   1   1.9e-52   1.4e-48  164.8   0.0     2   179     8   188     7   189 0.95 Protein of unknown function (DUF3897)
LPAM_1               PF08139.7     25 sp|Q7CJ14|LPOB_YERPE -            191   0.00089   19.3   0.9   1   1   2.3e-07    0.0017   18.5   0.9     1    23     1    17     1    18 0.95 Prokaryotic membrane lipoprotein lipid attachment site
LPP                  PF04728.8     56 sp|Q8ZDZ6|LPP_YERPE  -             78   1.2e-34  117.8  16.6   1   1   2.1e-37   1.4e-34  117.6  16.6     1    56    23    78    23    78 0.99 Lipoprotein leucine-zipper
ADIP                 PF11559.3    151 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0015   18.4   1.6   1   1   2.4e-06    0.0017   18.3   1.6    56   111    22    77    14    78 0.63 Afadin- and alpha -actinin-Binding
Atg14                PF10186.4    302 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0017   17.3   0.7   1   1   2.6e-06    0.0018   17.3   0.7    67   120    22    76    10    78 0.89 UV radiation resistance protein and autophagy-related subunit 14
FadA                 PF09403.5    126 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0021   18.0   0.7   1   1   3.2e-06    0.0021   18.0   0.7     4    68    11    73     1    78 0.74 Adhesion protein FadA
TMF_DNA_bd           PF12329.3     74 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0034   17.1   1.7   1   1   6.2e-06    0.0042   16.8   1.7    11    61    24    74    22    78 0.78 TATA element modulatory factor 1 DNA binding
DUF3359              PF11839.3     96 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0035   17.6   7.5   1   1   8.5e-06    0.0057   16.9   7.5     3    60     5    71     1    78 0.61 Protein of unknown function (DUF3359)
NPV_P10              PF05531.7     75 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0069   16.6   4.4   1   1   1.5e-05    0.0098   16.1   4.4     8    50    29    75    22    78 0.77 Nucleopolyhedrovirus P10 protein
DivIC                PF04977.10    80 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0076   15.7   1.3   1   2   1.3e-05    0.0091   15.4   0.6     5    54    13    62    10    70 0.72 Septum formation initiator
DUF948               PF06103.6     90 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0098   15.7   0.2   1   1   1.6e-05     0.011   15.6   0.2    30    65    22    57     6    77 0.72 Bacterial protein of unknown function (DUF948)
Tropomyosin_1        PF12718.2    143 sp|Q8ZDZ6|LPP_YERPE  -             78    0.0099   15.7   1.9   1   1   1.7e-05     0.012   15.5   1.9    29    75    26    72    22    78 0.80 Tropomyosin like
DUF1664              PF07889.7    126 sp|Q8ZDZ6|LPP_YERPE  -             78     0.017   14.9   0.3   1   1   2.5e-05     0.017   14.9   0.3    65   107    29    71    10    78 0.72 Protein of unknown function (DUF1664)
Cluap1               PF10234.4    267 sp|Q8ZDZ6|LPP_YERPE  -             78     0.017   14.3   0.5   1   1   3.1e-05     0.021   14.0   0.5   169   215    25    71    20    76 0.93 Clusterin-associated protein-1
DUF3373              PF11853.3    489 sp|Q8ZDZ6|LPP_YERPE  -             78     0.022   13.3   1.7   1   1   3.3e-05     0.022   13.2   1.7     6    64     5    65     1    75 0.68 Protein of unknown function (DUF3373)
FlaC_arch            PF05377.6     55 sp|Q8ZDZ6|LPP_YERPE  -             78     0.029   14.2   0.2   1   1   6.6e-05     0.044   13.6   0.2     8    38    26    56    24    60 0.90 Flagella accessory protein C (FlaC)
Spc7                 PF08317.6    326 sp|Q8ZDZ6|LPP_YERPE  -             78     0.035   12.7   0.5   1   1   5.4e-05     0.036   12.7   0.5   217   264    26    73    16    78 0.55 Spc7 kinetochore protein
GvpK                 PF05121.7     89 sp|Q8ZDZ6|LPP_YERPE  -             78     0.039   13.7   0.1   1   1   7.9e-05     0.054   13.3   0.1    38    79    17    58     7    67 0.88 Gas vesicle protein K
N_NLPC_P60           PF12912.2    124 sp|Q8ZDZ6|LPP_YERPE  -             78     0.043   13.9   0.3   1   1   7.2e-05     0.048   13.7   0.3     3    69    10    78     8    78 0.62 NLPC_P60 stabilising domain, N term
MbeD_MobD            PF04899.7     70 sp|Q8ZDZ6|LPP_YERPE  -             78     0.047   13.5   0.8   1   1   0.00011     0.076   12.9   0.1    48    70    24    46    14    46 0.91 MbeD/MobD like
Spore_III_AB         PF09548.5    170 sp|Q8ZDZ6|LPP_YERPE  -             78      0.11   12.1   0.0   1   1   0.00018      0.12   12.0   0.0     1    59     5    63     5    74 0.90 Stage III sporulation protein AB (spore_III_AB)
LPAM_1               PF08139.7     25 sp|Q8ZDZ6|LPP_YERPE  -             78      0.33   11.2   3.4   1   1   0.00086      0.58   10.4   3.4    13    25    11    23     1    23 0.70 Prokaryotic membrane lipoprotein lipid attachment site
OstA_C               PF04453.9    388 sp|Q8ZIK3|LPTD_YERPE -            780  1.7e-105  353.2  25.3   1   2  2.3e-109  1.7e-105  353.2  25.3     2   388   307   693   306   693 0.98 Organic solvent tolerance protein
OstA                 PF03968.9    113 sp|Q8ZIK3|LPTD_YERPE -            780   3.2e-30  104.3   1.1   1   2   9.8e-34   7.3e-30  103.2   0.2     2   112    53   193    52   194 0.99 OstA-like protein
LptE                 PF04390.7    155 sp|Q7CJV2|LPTE_YERPE -            207   9.6e-34  116.3   0.2   1   1   2.8e-37   1.4e-33  115.8   0.2     2   154    11   160    10   161 0.91 Lipopolysaccharide-assembly
DUF4054              PF13262.1    106 sp|Q7CJV2|LPTE_YERPE -            207     0.078   13.2   0.2   1   1   2.4e-05      0.12   12.6   0.2    13    78   128   203   119   207 0.71 Protein of unknown function (DUF4054)
Leader_Thr           PF08254.6     22 sp|Q8CKC6|LPT_YERPE  -             22   2.6e-14   52.0  10.7   1   1   1.8e-18   2.7e-14   52.0  10.7     1    22     1    22     1    22 0.99 Threonine leader peptide
Acetyltransf_11      PF13720.1     83 sp|Q8ZH56|LPXA_YERPE -            262   3.3e-29  100.9   0.0   1   1   1.1e-32   5.3e-29  100.2   0.0     1    83   180   262   180   262 0.98 Udp N-acetylglucosamine O-acyltransferase; Domain 2
Hexapep              PF00132.19    36 sp|Q8ZH56|LPXA_YERPE -            262     8e-28   94.6  25.5   1   6     9e-10   4.4e-06   25.9   1.3     4    35     2    33     1    34 0.92 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8ZH56|LPXA_YERPE -            262     8e-28   94.6  25.5   2   6   2.2e-11   1.1e-07   31.0   4.9     1    36    17    52    17    52 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8ZH56|LPXA_YERPE -            262     8e-28   94.6  25.5   4   6     1e-06    0.0051   16.2   0.0     2    35    66    99    65   100 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8ZH56|LPXA_YERPE -            262     8e-28   94.6  25.5   5   6     9e-12   4.5e-08   32.2   1.3     2    36   109   143   109   143 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|Q8ZH56|LPXA_YERPE -            262     8e-28   94.6  25.5   6   6   1.2e-07   0.00061   19.1   3.6     1    35   144   178   144   179 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|Q8ZH56|LPXA_YERPE -            262     0.055   13.0  19.4   1   5   3.5e-05      0.17   11.4   0.2    13    33    11    27     2    28 0.75 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|Q8ZH56|LPXA_YERPE -            262     0.055   13.0  19.4   2   5   0.00019      0.92    9.1   3.6     5    29    15    41    13    52 0.56 Hexapeptide repeat of succinyl-transferase
LpxB                 PF02684.10   373 sp|Q8ZH55|LPXB_YERPE -            394  1.6e-138  461.4   0.0   1   1  1.2e-142  1.8e-138  461.2   0.0     1   373    20   388    20   388 0.98 Lipid-A-disaccharide synthetase
LpxC                 PF03331.8    277 sp|Q8ZIE3|LPXC_YERPE -            306  5.9e-123  409.2   0.0   1   1  9.7e-127  7.2e-123  408.9   0.0     1   277     2   280     2   280 0.99 UDP-3-O-acyl N-acetylglycosamine deacetylase
Peptidase_S31        PF05578.7    211 sp|Q8ZIE3|LPXC_YERPE -            306      0.03   13.5   0.0   1   1   6.1e-06     0.045   12.9   0.0    24    76    33    86    17    95 0.85 Pestivirus NS3 polyprotein peptidase S31
Hexapep              PF00132.19    36 sp|P58611|LPXD_YERPE -            340   3.2e-31  105.4  43.4   1   6   1.4e-07   0.00053   19.3   0.1    10    35   100   125   100   126 0.93 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P58611|LPXD_YERPE -            340   3.2e-31  105.4  43.4   2   6     7e-13   2.6e-09   36.1   5.3     2    36   110   144   109   144 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P58611|LPXD_YERPE -            340   3.2e-31  105.4  43.4   3   6   4.8e-13   1.8e-09   36.6   1.5     1    35   145   179   145   180 0.97 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P58611|LPXD_YERPE -            340   3.2e-31  105.4  43.4   4   6   5.4e-06      0.02   14.3   0.1    18    35   199   216   197   217 0.90 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P58611|LPXD_YERPE -            340   3.2e-31  105.4  43.4   5   6   8.8e-11   3.2e-07   29.5   9.5     1    35   222   256   222   257 0.94 Bacterial transferase hexapeptide (six repeats)
LpxD                 PF04613.9     72 sp|P58611|LPXD_YERPE -            340   4.1e-24   83.8   0.0   1   1   1.9e-27     7e-24   83.1   0.0     1    72    21    90    21    90 0.97 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
Hexapep_2            PF14602.1     34 sp|P58611|LPXD_YERPE -            340   1.2e-12   47.1  44.0   1   4     6e-11   2.2e-07   30.2   8.6     3    33   111   143   109   144 0.93 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P58611|LPXD_YERPE -            340   1.2e-12   47.1  44.0   2   4   2.1e-07   0.00076   18.9   1.0     4    34   142   180   141   180 0.79 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P58611|LPXD_YERPE -            340   1.2e-12   47.1  44.0   4   4   0.00023      0.85    9.2   0.3     2    26   259   285   258   290 0.91 Hexapeptide repeat of succinyl-transferase
GTP_EFTU_D2          PF03144.20    74 sp|P58611|LPXD_YERPE -            340     0.015   15.3   4.0   3   3   2.7e-05       0.1   12.7   0.0     3    48   249   298   247   332 0.78 Elongation factor Tu domain 2
Metallophos_2        PF12850.2    156 sp|Q8ZCB8|LPXH_YERPE -            240   3.7e-12   46.3   0.0   1   1   7.9e-16   5.8e-12   45.7   0.0     1   125     1   203     1   226 0.80 Calcineurin-like phosphoesterase superfamily domain
Metallophos          PF00149.23   200 sp|Q8ZCB8|LPXH_YERPE -            240     6e-12   45.3   0.2   1   1     4e-15     3e-11   43.1   0.2     2   200     2   199     1   199 0.93 Calcineurin-like phosphoesterase
LpxK                 PF02606.9    326 sp|Q8ZGA8|LPXK_YERPE -            328  1.1e-113  379.5   0.0   1   1  4.4e-117  1.3e-113  379.2   0.0     2   322    13   317    12   321 0.95 Tetraacyldisaccharide-1-P 4'-kinase
CbiA                 PF01656.18   195 sp|Q8ZGA8|LPXK_YERPE -            328      0.06   12.7   0.0   1   1   0.00011      0.32   10.3   0.0     6    34    55    83    49   195 0.67 CobQ/CobB/MinD/ParA nucleotide binding domain
MobB                 PF03205.9    140 sp|Q8ZGA8|LPXK_YERPE -            328      0.09   12.4   0.0   1   1   5.8e-05      0.17   11.5   0.0    10    96    58   144    48   152 0.67 Molybdopterin guanine dinucleotide synthesis protein B
XPG_I                PF00867.13    94 sp|Q8ZGA8|LPXK_YERPE -            328      0.13   12.3   0.0   1   1     8e-05      0.24   11.4   0.0     3    34   117   147   115   149 0.91 XPG I-region
Glyco_transf_4       PF13439.1    177 sp|Q8ZGA8|LPXK_YERPE -            328      0.14   11.8   0.0   1   1   6.8e-05       0.2   11.3   0.0    12    87    59   146    48   186 0.81 Glycosyltransferase Family 4
Peptidase_A8         PF01252.13   152 sp|Q8ZIL9|LSPA_YERPE -            169   2.7e-45  153.7   8.3   1   1   6.8e-49   3.3e-45  153.3   8.3     2   146    15   157    13   164 0.94 Signal peptidase (SPase) II
ABC_tran             PF00005.22   137 sp|Q0WJP9|LSRA_YERPE -            527   3.4e-48  163.4   0.0   1   2   2.3e-30     2e-27   96.1   0.0     1   137    27   169    27   169 0.96 ABC transporter
ABC_tran             PF00005.22   137 sp|Q0WJP9|LSRA_YERPE -            527   3.4e-48  163.4   0.0   2   2   7.8e-21   6.8e-18   65.2   0.0     3   136   284   434   282   435 0.85 ABC transporter
AAA_21               PF13304.1    303 sp|Q0WJP9|LSRA_YERPE -            527   5.6e-14   52.7   0.4   1   3   3.1e-07   0.00027   20.9   0.0     2    72    40   110    39   119 0.84 AAA domain
AAA_21               PF13304.1    303 sp|Q0WJP9|LSRA_YERPE -            527   5.6e-14   52.7   0.4   2   3    0.0011      0.96    9.3   0.2   253   297   157   198   134   203 0.85 AAA domain
AAA_21               PF13304.1    303 sp|Q0WJP9|LSRA_YERPE -            527   5.6e-14   52.7   0.4   3   3   1.1e-06   0.00096   19.2   0.0   226   296   396   463   381   464 0.86 AAA domain
SMC_N                PF02463.14   220 sp|Q0WJP9|LSRA_YERPE -            527   2.9e-05   23.4   0.0   2   2   3.6e-05     0.031   13.5   0.0   104   213   102   478    91   485 0.88 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|Q0WJP9|LSRA_YERPE -            527    0.0001   21.5   0.3   1   2   5.1e-05     0.045   12.9   0.1    26    64    27    66    13    74 0.83 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|Q0WJP9|LSRA_YERPE -            527   0.00015   21.9   1.3   1   2   0.00013      0.11   12.6   0.2     8   123    41   197    35   206 0.75 AAA domain
UPF0079              PF02367.12   123 sp|Q0WJP9|LSRA_YERPE -            527   0.00026   20.6   0.3   1   2    0.0007      0.61    9.7   0.0    10    39    32    61    26    86 0.79 Uncharacterised P-loop hydrolase UPF0079
AAA_29               PF13555.1     62 sp|Q0WJP9|LSRA_YERPE -            527   0.00027   20.4   0.1   1   1   8.1e-07   0.00071   19.0   0.1    17    51    32    65    26    73 0.79 P-loop containing region of AAA domain
Mg_chelatase         PF01078.16   207 sp|Q0WJP9|LSRA_YERPE -            527   0.00046   19.3   0.7   1   2    0.0011      0.94    8.6   0.1    27    50    42    65    34    81 0.87 Magnesium chelatase, subunit ChlI
Mg_chelatase         PF01078.16   207 sp|Q0WJP9|LSRA_YERPE -            527   0.00046   19.3   0.7   2   2   0.00091      0.79    8.8   0.0    25    66   295   336   275   347 0.86 Magnesium chelatase, subunit ChlI
AAA_15               PF13175.1    415 sp|Q0WJP9|LSRA_YERPE -            527    0.0034   16.4   0.2   1   3    0.0011      0.94    8.4   0.0    17    42    31    57    15   120 0.80 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q0WJP9|LSRA_YERPE -            527    0.0071   16.6   0.1   1   1   1.7e-05     0.015   15.6   0.1    14    43    29    61    19    73 0.83 AAA domain
AAA_25               PF13481.1    194 sp|Q0WJP9|LSRA_YERPE -            527     0.021   14.2   0.1   1   1   7.8e-05     0.068   12.5   0.0    30    67    34    81    26    94 0.73 AAA domain
MukB                 PF04310.7    227 sp|Q0WJP9|LSRA_YERPE -            527      0.05   12.9   0.0   1   1   0.00014      0.12   11.6   0.0    29    59    39    69    29    86 0.87 MukB N-terminal
ABC_ATPase           PF09818.4    448 sp|Q0WJP9|LSRA_YERPE -            527      0.29    9.6   7.2   2   2   0.00035      0.31    9.5   0.4   379   413   448   481   404   495 0.86 Predicted ATPase of the ABC class
Peripla_BP_4         PF13407.1    257 sp|Q74PW2|LSRB_YERPE -            339     1e-52  179.0   6.0   1   1   3.4e-56   1.3e-52  178.7   6.0     1   255    29   284    29   286 0.96 Periplasmic binding protein domain
Peripla_BP_6         PF13458.1    343 sp|Q74PW2|LSRB_YERPE -            339   1.7e-05   24.3   6.0   1   3   6.8e-06     0.025   13.9   0.1   150   216    43   110    20   120 0.90 Periplasmic binding protein
Peripla_BP_6         PF13458.1    343 sp|Q74PW2|LSRB_YERPE -            339   1.7e-05   24.3   6.0   2   3   0.00017      0.64    9.3   2.3   110   225   124   244   111   248 0.64 Periplasmic binding protein
Glyco_tran_WecB      PF03808.8    172 sp|Q74PW2|LSRB_YERPE -            339     0.002   17.5   0.1   1   2   2.8e-06     0.011   15.2   0.0    35   104   138   213   125   217 0.77 Glycosyl transferase WecB/TagA/CpsF family
BPD_transp_2         PF02653.11   267 sp|Q7CG49|LSRC_YERPE -            351   3.9e-44  150.6  43.1   2   2   2.6e-48   3.9e-44  150.6  43.1     4   267    39   301    36   301 0.95 Branched-chain amino acid transport system / permease component
BPD_transp_2         PF02653.11   267 sp|Q7CG48|LSRD_YERPE -            333   1.5e-44  152.0  43.0   1   1   2.4e-48   1.8e-44  151.7  43.0     4   267    39   307    36   307 0.96 Branched-chain amino acid transport system / permease component
PspB                 PF06667.7     75 sp|Q7CG48|LSRD_YERPE -            333    0.0048   16.7   1.1   1   1   1.4e-06      0.01   15.7   1.1     6    27   165   186   160   198 0.86 Phage shock protein B
DeoC                 PF01791.4    236 sp|Q7CG47|LSRF_YERPE -            291   5.9e-17   61.7   0.1   1   1   4.9e-21   7.3e-17   61.4   0.1     1   235    51   258    51   259 0.93 DeoC/LacD family aldolase
ABM                  PF03992.11    78 sp|Q7CG46|LSRG_YERPE -             96   8.9e-15   54.4   0.1   1   1   6.7e-19   9.9e-15   54.3   0.1     1    77     1    76     1    77 0.95 Antibiotic biosynthesis monooxygenase
FGGY_N               PF00370.16   245 sp|Q0WJP7|LSRK_YERPE -            530   6.3e-49  166.4   0.0   1   1   1.6e-52   1.2e-48  165.6   0.0     1   245    13   260    13   260 0.93 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|Q0WJP7|LSRK_YERPE -            530   1.3e-21   77.1   0.1   1   1   3.1e-25   2.3e-21   76.3   0.1    18   197   286   467   270   468 0.83 FGGY family of carbohydrate kinases, C-terminal domain
LuxS                 PF02664.10   157 sp|Q8ZBU3|LUXS_YERPE -            171   6.6e-75  249.9   0.0   1   1     5e-79   7.5e-75  249.7   0.0     2   156     3   161     2   162 0.98 S-Ribosylhomocysteinase (LuxS)
HlyD_2               PF12700.2    328 sp|P58411|MACA_YERPE -            371   2.8e-30  105.5   8.2   1   1   2.3e-33   3.4e-30  105.3   8.2     2   328    42   363    41   363 0.87 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P58411|MACA_YERPE -            371   1.8e-18   66.8   5.6   1   2   5.5e-06    0.0082   16.4   0.8     2    60    65   126    64   182 0.79 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P58411|MACA_YERPE -            371   1.8e-18   66.8   5.6   2   2   3.8e-17   5.7e-14   52.3   0.3     2   100   187   287   186   306 0.87 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P58411|MACA_YERPE -            371     5e-15   55.6  26.2   1   1   8.6e-18   1.3e-14   54.2  26.2     2   305    63   363    62   363 0.87 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P58411|MACA_YERPE -            371   7.8e-12   44.6   4.8   1   2   8.5e-13   1.3e-09   37.6   2.2     3    49    63   109    60   110 0.94 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P58411|MACA_YERPE -            371   9.5e-06   25.1   0.6   1   2   5.9e-06    0.0088   15.6   0.1     8    37    65    93    59   107 0.56 Biotin-requiring enzyme
RnfC_N               PF13375.1    101 sp|P58411|MACA_YERPE -            371    0.0036   17.0   0.7   1   3   8.5e-05      0.13   12.0   0.1    36    62    68    94    57   130 0.87 RnfC Barrel sandwich hybrid domain
DUF4131              PF13567.1    176 sp|P58411|MACA_YERPE -            371     0.037   13.4   0.2   1   1   6.3e-05     0.093   12.1   0.2    37   127     6    99     2   129 0.76 Domain of unknown function (DUF4131)
HAMP                 PF00672.20    70 sp|P58411|MACA_YERPE -            371     0.049   13.8   0.3   1   1   0.00014      0.21   11.7   0.1     6    27    12    33    11    56 0.92 HAMP domain
MacB_PCD             PF12704.2    232 sp|Q7CHI2|MACB1_YERPE -            649   2.5e-52  177.7   2.9   1   2   4.2e-55   2.5e-52  177.7   2.9     1   231   262   492   262   493 0.96 MacB-like periplasmic core domain
ABC_tran             PF00005.22   137 sp|Q7CHI2|MACB1_YERPE -            649   4.4e-31  108.0   0.0   1   1   1.8e-33     1e-30  106.7   0.0     1   136    24   172    24   173 0.95 ABC transporter
FtsX                 PF02687.16   121 sp|Q7CHI2|MACB1_YERPE -            649   1.4e-20   73.2  10.2   2   2   2.3e-23   1.4e-20   73.2  10.2     2   121   528   642   527   642 0.96 FtsX-like permease family
AAA_21               PF13304.1    303 sp|Q7CHI2|MACB1_YERPE -            649   3.5e-12   46.8   0.1   1   2   9.1e-06    0.0054   16.7   0.4     2    22    37    57    36    95 0.81 AAA domain
AAA_21               PF13304.1    303 sp|Q7CHI2|MACB1_YERPE -            649   3.5e-12   46.8   0.1   2   2   4.9e-09   2.9e-06   27.4   0.0   223   301   131   206   116   208 0.91 AAA domain
SMC_N                PF02463.14   220 sp|Q7CHI2|MACB1_YERPE -            649   2.3e-06   26.9   0.3   2   2   3.4e-06     0.002   17.3   0.0   132   212   140   217   113   223 0.86 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|Q7CHI2|MACB1_YERPE -            649   0.00021   21.3   0.2   1   1   1.1e-06   0.00066   19.7   0.1    20    84    30    97    17   203 0.71 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q7CHI2|MACB1_YERPE -            649   0.00022   20.3   0.0   1   2    0.0011      0.63    9.0   0.0    23    43    35    58    12    86 0.73 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q7CHI2|MACB1_YERPE -            649   0.00022   20.3   0.0   2   2   0.00095      0.56    9.1   0.0   368   414   159   206   136   207 0.86 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q7CHI2|MACB1_YERPE -            649   0.00045   19.6   0.1   1   1   1.8e-06    0.0011   18.4   0.1    18    40    30    51    23    57 0.82 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|Q7CHI2|MACB1_YERPE -            649    0.0027   16.9   0.2   1   1   1.2e-05    0.0074   15.4   0.0    32    55    30    54    11    85 0.84 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|Q7CHI2|MACB1_YERPE -            649    0.0033   18.2   0.5   1   1   1.5e-05     0.009   16.8   0.5     2    19    37    54    36   125 0.85 AAA domain
AAA_22               PF13401.1    131 sp|Q7CHI2|MACB1_YERPE -            649    0.0042   17.2   1.2   1   2   0.00019      0.11   12.5   0.3     5    37    35   100    31   209 0.49 AAA domain
AAA_33               PF13671.1    143 sp|Q7CHI2|MACB1_YERPE -            649    0.0047   16.8   0.0   1   1   3.8e-05     0.023   14.5   0.0     1   112    36   207    36   217 0.58 AAA domain
ABC2_membrane_3      PF12698.2    344 sp|Q7CHI2|MACB1_YERPE -            649     0.012   14.6   2.9   1   1   3.8e-05     0.023   13.7   2.9   111   263   481   633   405   641 0.69 ABC-2 family transporter protein
AAA_10               PF12846.2    304 sp|Q7CHI2|MACB1_YERPE -            649     0.013   14.9   1.5   1   1   3.4e-05      0.02   14.3   0.2     4    22    37    56    34    69 0.80 AAA-like domain
MMR_HSR1             PF01926.18   116 sp|Q7CHI2|MACB1_YERPE -            649     0.017   15.0   0.1   1   1   8.4e-05      0.05   13.5   0.1     2    20    37    55    36   235 0.82 50S ribosome-binding GTPase
HAD                  PF12710.2    192 sp|Q7CHI2|MACB1_YERPE -            649     0.018   15.2   0.3   1   1   0.00042      0.25   11.4   0.2    93   121   182   210    76   341 0.83 haloacid dehalogenase-like hydrolase
AAA_25               PF13481.1    194 sp|Q7CHI2|MACB1_YERPE -            649     0.025   14.0   0.4   1   1   0.00026      0.15   11.4   0.0    30    50    31    51    19    72 0.86 AAA domain
AAA_23               PF13476.1    202 sp|Q7CHI2|MACB1_YERPE -            649      0.04   14.2   0.0   1   1   0.00013     0.078   13.3   0.0    12    37    26    52     5    57 0.71 AAA domain
AAA_28               PF13521.1    163 sp|Q7CHI2|MACB1_YERPE -            649     0.052   13.5   0.0   1   1   0.00019      0.11   12.4   0.0     2    20    37    55    36    89 0.82 AAA domain
DUF87                PF01935.12   229 sp|Q7CHI2|MACB1_YERPE -            649     0.069   12.9   0.1   1   1   0.00026      0.16   11.8   0.1    26    43    37    54    17    56 0.81 Domain of unknown function DUF87
MobB                 PF03205.9    140 sp|Q7CHI2|MACB1_YERPE -            649     0.098   12.3   0.2   1   1   0.00055      0.33   10.6   0.1     2    20    36    54    35    59 0.91 Molybdopterin guanine dinucleotide synthesis protein B
AAA_18               PF13238.1    129 sp|Q7CHI2|MACB1_YERPE -            649       0.1   12.9   0.0   1   1   0.00044      0.26   11.5   0.0     1    18    37    54    37    88 0.84 AAA domain
DUF3493              PF11998.3     75 sp|Q7CHI2|MACB1_YERPE -            649      0.33   10.8   3.1   1   2    0.0016      0.94    9.4   0.5    37    73   259   295   257   297 0.93 Protein of unknown function (DUF3493)
MacB_PCD             PF12704.2    232 sp|Q7CJG3|MACB2_YERPE -            678   3.5e-49  167.4   3.1   1   1   5.5e-52   3.5e-49  167.4   3.1     1   229   291   519   291   522 0.95 MacB-like periplasmic core domain
ABC_tran             PF00005.22   137 sp|Q7CJG3|MACB2_YERPE -            678   2.2e-32  112.2   0.0   1   2   5.1e-34   3.3e-31  108.4   0.0     1   136    30   178    30   179 0.91 ABC transporter
FtsX                 PF02687.16   121 sp|Q7CJG3|MACB2_YERPE -            678   2.4e-19   69.2  12.7   2   2   3.8e-22   2.4e-19   69.2  12.7     2   121   557   671   556   671 0.96 FtsX-like permease family
AAA_21               PF13304.1    303 sp|Q7CJG3|MACB2_YERPE -            678     2e-09   37.8   0.3   1   2   0.00011     0.069   13.0   0.3     2    24    43    65    42   130 0.79 AAA domain
AAA_21               PF13304.1    303 sp|Q7CJG3|MACB2_YERPE -            678     2e-09   37.8   0.3   2   2   9.4e-08     6e-05   23.1   0.0   231   301   145   212    79   214 0.82 AAA domain
AAA_16               PF13191.1    185 sp|Q7CJG3|MACB2_YERPE -            678   2.6e-06   27.5   0.1   1   1   1.1e-08   6.8e-06   26.1   0.1    18   166    34   217    23   232 0.67 AAA ATPase domain
SMC_N                PF02463.14   220 sp|Q7CJG3|MACB2_YERPE -            678   2.3e-05   23.7   0.4   2   2   6.5e-05     0.042   13.0   0.0   128   212   142   223   112   227 0.78 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|Q7CJG3|MACB2_YERPE -            678   0.00017   20.7   0.1   1   1   7.1e-07   0.00046   19.4   0.1    18    55    22    60     7    71 0.78 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|Q7CJG3|MACB2_YERPE -            678   0.00058   19.3   0.2   1   1   2.1e-06    0.0013   18.1   0.2    20    40    38    57    29    62 0.85 P-loop containing region of AAA domain
AAA_17               PF13207.1    121 sp|Q7CJG3|MACB2_YERPE -            678    0.0014   19.4   0.8   1   1   5.3e-06    0.0034   18.1   0.3     2    43    43    80    42   147 0.60 AAA domain
AAA_22               PF13401.1    131 sp|Q7CJG3|MACB2_YERPE -            678     0.002   18.2   1.1   1   1   7.3e-05     0.047   13.8   1.1     3   121    39   206    36   215 0.54 AAA domain
AAA_10               PF12846.2    304 sp|Q7CJG3|MACB2_YERPE -            678    0.0024   17.3   0.1   1   1   1.2e-05    0.0075   15.7   0.1     4    24    43    64    41    77 0.79 AAA-like domain
MMR_HSR1             PF01926.18   116 sp|Q7CJG3|MACB2_YERPE -            678    0.0063   16.4   0.0   1   2   0.00014     0.092   12.7   0.0     2    19    43    60    42    84 0.89 50S ribosome-binding GTPase
FtsK_SpoIIIE         PF01580.13   205 sp|Q7CJG3|MACB2_YERPE -            678     0.011   15.2   0.1   1   1   5.1e-05     0.033   13.6   0.1    30    57    32    59    14    62 0.81 FtsK/SpoIIIE family
HAD                  PF12710.2    192 sp|Q7CJG3|MACB2_YERPE -            678     0.014   15.5   0.0   1   1   7.7e-05      0.05   13.7   0.0    91   152   179   260    58   303 0.68 haloacid dehalogenase-like hydrolase
AAA_18               PF13238.1    129 sp|Q7CJG3|MACB2_YERPE -            678     0.018   15.3   1.6   1   1   0.00025      0.16   12.2   1.6     1    18    43    60    43   245 0.87 AAA domain
AAA_33               PF13671.1    143 sp|Q7CJG3|MACB2_YERPE -            678     0.022   14.6   1.8   1   1   0.00054      0.35   10.7   0.7     1    19    42    60    42   243 0.54 AAA domain
MobB                 PF03205.9    140 sp|Q7CJG3|MACB2_YERPE -            678     0.032   13.9   1.5   1   1   0.00012      0.08   12.6   0.1     2    20    42    60    41    63 0.91 Molybdopterin guanine dinucleotide synthesis protein B
DUF87                PF01935.12   229 sp|Q7CJG3|MACB2_YERPE -            678     0.054   13.3   0.7   1   1   0.00023      0.15   11.9   0.2    26    43    43    60    28    62 0.87 Domain of unknown function DUF87
AAA_25               PF13481.1    194 sp|Q7CJG3|MACB2_YERPE -            678     0.072   12.4   0.1   1   2   0.00086      0.56    9.5   0.0    30    50    37    57    11    76 0.82 AAA domain
ChuX_HutX            PF06228.8    141 sp|Q7CJG3|MACB2_YERPE -            678       0.1   11.9   0.1   1   1   0.00071      0.46    9.8   0.0    13    64   173   224   161   229 0.83 Haem utilisation ChuX/HutX
AAA_28               PF13521.1    163 sp|Q7CJG3|MACB2_YERPE -            678      0.11   12.5   0.0   1   1   0.00036      0.23   11.3   0.0     2    20    43    61    42    92 0.82 AAA domain
AAA_23               PF13476.1    202 sp|Q7CJG3|MACB2_YERPE -            678       0.2   11.9   0.1   1   1   0.00058      0.38   11.0   0.1    12    37    32    58    25    62 0.77 AAA domain
MalF_P2              PF14785.1    164 sp|Q74RF9|MALF_YERPE -            530   1.3e-64  217.0   0.1   1   1   2.3e-68   1.7e-64  216.6   0.1     1   164   113   276   113   276 1.00 Maltose transport system permease protein MalF P2 domain
BPD_transp_1         PF00528.17   185 sp|Q74RF9|MALF_YERPE -            530   6.2e-20   71.4  16.9   2   2   8.4e-24   6.2e-20   71.4  16.9     3   170   313   517   311   524 0.84 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|Q74RF8|MALG_YERPE -            303   5.1e-16   58.7  15.7   2   2   3.4e-20   5.1e-16   58.7  15.7     9   180   114   293   106   298 0.86 Binding-protein-dependent transport system inner membrane component
ABC_tran             PF00005.22   137 sp|Q8ZAS8|MALK_YERPE -            369   1.4e-33  116.1   0.0   1   1     5e-36   2.8e-33  115.1   0.0     3   136    21   161    19   162 0.92 ABC transporter
TOBE_2               PF08402.5     75 sp|Q8ZAS8|MALK_YERPE -            369   5.7e-13   48.6   0.8   2   2   5.3e-14     3e-11   43.1   0.1     1    75   281   353   281   353 0.93 TOBE domain
TOBE                 PF03459.12    64 sp|Q8ZAS8|MALK_YERPE -            369     2e-11   43.7   0.2   1   2   2.2e-09   1.2e-06   28.4   0.0     1    62   236   288   236   290 0.93 TOBE domain
TOBE                 PF03459.12    64 sp|Q8ZAS8|MALK_YERPE -            369     2e-11   43.7   0.2   2   2   0.00017     0.097   12.7   0.1     6    29   297   320   292   346 0.92 TOBE domain
AAA_21               PF13304.1    303 sp|Q8ZAS8|MALK_YERPE -            369   2.4e-07   31.0   0.0   1   2   3.2e-06    0.0018   18.2   0.0     1    27    31    55    31    75 0.78 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZAS8|MALK_YERPE -            369   2.4e-07   31.0   0.0   2   2   0.00056      0.32   10.9   0.0   236   298   133   193    94   198 0.80 AAA domain
DUF258               PF03193.11   161 sp|Q8ZAS8|MALK_YERPE -            369   7.8e-05   21.9   0.0   1   1   2.6e-07   0.00015   20.9   0.0    28    65    21    59     3    68 0.82 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q8ZAS8|MALK_YERPE -            369   0.00038   20.3   0.2   1   1   3.1e-06    0.0018   18.1   0.2     2    20    32    50    31   216 0.87 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZAS8|MALK_YERPE -            369   0.00087   19.3   0.4   1   1   6.1e-06    0.0035   17.3   0.0    22    44    27    49    16    60 0.88 AAA ATPase domain
AAA_22               PF13401.1    131 sp|Q8ZAS8|MALK_YERPE -            369    0.0029   17.7   0.0   1   1   1.6e-05    0.0094   16.0   0.0     4    26    29    51    25    68 0.88 AAA domain
AAA_15               PF13175.1    415 sp|Q8ZAS8|MALK_YERPE -            369    0.0035   16.4   0.0   1   2   0.00069      0.39    9.6   0.0    22    57    20    82     8   121 0.67 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q8ZAS8|MALK_YERPE -            369    0.0036   16.7   0.0   1   1   1.3e-05    0.0075   15.7   0.0    17    40    24    46    18    50 0.85 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|Q8ZAS8|MALK_YERPE -            369    0.0067   16.7   0.0   1   1     2e-05     0.011   16.0   0.0    12    39    21    49    11    52 0.80 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZAS8|MALK_YERPE -            369    0.0077   17.0   0.2   1   1   2.7e-05     0.015   16.0   0.2     2    21    32    51    31   211 0.88 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZAS8|MALK_YERPE -            369    0.0083   15.3   0.2   1   1   0.00027      0.15   11.2   0.2    25   208    30   204    10   212 0.61 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|Q8ZAS8|MALK_YERPE -            369     0.015   14.7   0.0   1   1   7.3e-05     0.042   13.2   0.0    31    54    27    50    18    76 0.85 AAA domain
NACHT                PF05729.7    166 sp|Q8ZAS8|MALK_YERPE -            369     0.016   14.9   0.0   1   1   5.6e-05     0.032   13.8   0.0     3    21    32    50    30    57 0.92 NACHT domain
AAA_10               PF12846.2    304 sp|Q8ZAS8|MALK_YERPE -            369      0.02   14.3   0.1   1   1   5.8e-05     0.033   13.6   0.1     4    24    32    53    30    70 0.82 AAA-like domain
AAA                  PF00004.24   132 sp|Q8ZAS8|MALK_YERPE -            369     0.026   14.7   0.0   1   1   0.00012      0.07   13.3   0.0     1    20    32    51    32    86 0.80 ATPase family associated with various cellular activities (AAA)
MobB                 PF03205.9    140 sp|Q8ZAS8|MALK_YERPE -            369     0.029   14.0   0.0   1   1   0.00012     0.069   12.8   0.0     3    21    32    50    30    52 0.91 Molybdopterin guanine dinucleotide synthesis protein B
AAA_28               PF13521.1    163 sp|Q8ZAS8|MALK_YERPE -            369      0.05   13.5   0.1   1   1   0.00017       0.1   12.5   0.1     2    20    32    50    31    63 0.88 AAA domain
NB-ARC               PF00931.17   287 sp|Q8ZAS8|MALK_YERPE -            369     0.088   11.6   0.0   1   1   0.00025      0.14   10.9   0.0    15    40    24    50    13    58 0.78 NB-ARC domain
RNA_helicase         PF00910.17   107 sp|Q8ZAS8|MALK_YERPE -            369      0.11   12.7   0.1   1   1   0.00038      0.22   11.7   0.1     1    19    32    50    32    64 0.88 RNA helicase
Rad17                PF03215.10   519 sp|Q8ZAS8|MALK_YERPE -            369      0.11   11.1   0.0   1   1   0.00029      0.17   10.5   0.0    47    66    31    50    18    70 0.84 Rad17 cell cycle checkpoint protein
MMR_HSR1             PF01926.18   116 sp|Q8ZAS8|MALK_YERPE -            369      0.12   12.3   0.0   1   1   0.00046      0.26   11.2   0.0     2    21    32    51    31    66 0.86 50S ribosome-binding GTPase
Arch_ATPase          PF01637.13   234 sp|Q8ZAS8|MALK_YERPE -            369      0.13   11.9   0.0   1   1   0.00039      0.22   11.1   0.0    21    41    30    50    21    58 0.83 Archaeal ATPase
AAA_14               PF13173.1    128 sp|Q8ZAS8|MALK_YERPE -            369      0.14   12.0   0.0   1   1   0.00058      0.33   10.8   0.0     3    23    30    50    28    59 0.86 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZAS8|MALK_YERPE -            369      0.15   12.3   0.0   1   1   0.00059      0.34   11.2   0.0     1    23    32    64    32    97 0.71 AAA domain
Malic_M              PF03949.10   255 sp|Q8ZG09|MAO1_YERPE -            565   2.4e-91  305.8   0.0   1   1   8.9e-95   3.3e-91  305.3   0.0     1   254   271   530   271   531 0.99 Malic enzyme, NAD binding domain
malic                PF00390.14   182 sp|Q8ZG09|MAO1_YERPE -            565     6e-80  267.1   0.0   2   2   5.4e-83     2e-79  265.4   0.0     1   182    81   261    81   261 0.99 Malic enzyme, N-terminal domain
HAD_2                PF13419.1    176 sp|Q8ZG09|MAO1_YERPE -            565     0.032   14.4   0.0   1   2   3.8e-05      0.14   12.3   0.0    37   104    76   157    40   160 0.71 Haloacid dehalogenase-like hydrolase
DUF2478              PF10649.4    159 sp|Q8ZG09|MAO1_YERPE -            565     0.044   13.1   0.1   2   2     5e-05      0.18   11.0   0.1    64   103   300   339   290   341 0.94 Protein of unknown function (DUF2478)
MatP                 PF06303.7    148 sp|Q8ZG78|MATP_YERPE -            151   1.8e-75  251.8  10.9   1   1   2.7e-79     2e-75  251.6  10.9     1   148     1   148     1   148 1.00 Organiser of macrodomain of Terminus of chromosome
RHH_4                PF13467.1     67 sp|Q8ZG78|MATP_YERPE -            151    0.0012   18.7   0.1   1   1   3.8e-07    0.0029   17.4   0.1    15    52    93   132    88   140 0.79 Ribbon-helix-helix domain
Ldh_1_N              PF00056.18   141 sp|P61892|MDH_YERPE  -            312   3.1e-47  159.9   0.6   1   1   1.5e-50   4.5e-47  159.4   0.6     1   141     1   145     1   145 0.99 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C              PF02866.13   174 sp|P61892|MDH_YERPE  -            312   1.2e-46  158.6   0.0   1   1   5.5e-50   1.6e-46  158.1   0.0     1   174   147   310   147   310 0.99 lactate/malate dehydrogenase, alpha/beta C-terminal domain
NAD_binding_10       PF13460.1    183 sp|P61892|MDH_YERPE  -            312      0.11   12.4   2.1   1   1    0.0002      0.59   10.1   2.1     1    87     3   107     3   118 0.69 NADH(P)-binding
Semialdhyde_dh       PF01118.19   121 sp|P61892|MDH_YERPE  -            312      0.25   11.6   1.6   1   2   0.00019      0.55   10.5   0.3     1    26     2    28     2    81 0.66 Semialdehyde dehydrogenase, NAD binding domain
HlyD                 PF00529.15   305 sp|Q8ZCW1|MDTA_YERPE -            444   2.7e-27   95.8  15.1   1   1   1.3e-30   2.7e-27   95.8  15.1     2   304    90   381    89   382 0.92 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|Q8ZCW1|MDTA_YERPE -            444   5.1e-25   88.3   3.9   1   1   3.1e-28   6.7e-25   87.9   3.9     2   328    69   382    68   382 0.84 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|Q8ZCW1|MDTA_YERPE -            444   5.8e-16   57.8   0.4   1   2   1.8e-17   3.9e-14   52.0   0.1     2    50    89   137    88   137 0.97 Biotin-lipoyl like
HlyD_3               PF13437.1    105 sp|Q8ZCW1|MDTA_YERPE -            444   7.4e-14   51.9   2.4   1   2     4e-06    0.0084   16.4   0.0     1    42    91   131    91   197 0.87 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|Q8ZCW1|MDTA_YERPE -            444   7.4e-14   51.9   2.4   2   2   1.2e-11   2.5e-08   34.2   0.9     1    97   199   306   199   318 0.85 HlyD family secretion protein
Biotin_lipoyl        PF00364.17    74 sp|Q8ZCW1|MDTA_YERPE -            444    0.0033   17.0   0.2   1   2   9.3e-06      0.02   14.5   0.0    44    74    90   120    88   120 0.94 Biotin-requiring enzyme
RQC                  PF09382.5    106 sp|Q8ZCW1|MDTA_YERPE -            444     0.083   12.6   0.0   1   1   0.00011      0.22   11.2   0.0    57    90   267   302   248   313 0.86 RQC domain
OEP                  PF02321.13   188 sp|Q8ZCW1|MDTA_YERPE -            444      0.22   11.0   8.2   1   1   0.00019      0.41   10.2   8.2   115   185   127   197   125   198 0.92 Outer membrane efflux protein
ACR_tran             PF00873.14  1021 sp|Q8ZCW0|MDTB_YERPE -           1052         0 1158.9  31.2   1   1         0         0 1158.7  31.2     2  1020    13  1022    12  1023 1.00 AcrB/AcrD/AcrF family
SecD_SecF            PF02355.11   189 sp|Q8ZCW0|MDTB_YERPE -           1052     3e-08   33.0  32.7   1   2   3.7e-09   1.4e-05   24.4  16.1    35   181   347   493   323   500 0.81 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|Q8ZCW0|MDTB_YERPE -           1052     3e-08   33.0  32.7   2   2   6.3e-06     0.024   13.8   8.6    32   185   865  1021   838  1025 0.86 Protein export membrane protein
MMPL                 PF03176.10   333 sp|Q8ZCW0|MDTB_YERPE -           1052   1.4e-06   27.2  12.4   1   2   3.8e-10   1.4e-06   27.2  12.4   140   301   338   497   288   526 0.83 MMPL family
RNA_pol_Rpb1_7       PF04990.7    135 sp|Q8ZCW0|MDTB_YERPE -           1052      0.14   11.8   0.0   1   1   0.00012      0.44   10.2   0.0    50    97   717   765   664   773 0.75 RNA polymerase Rpb1, domain 7
ACR_tran             PF00873.14  1021 sp|Q8ZCV9|MDTC_YERPE -           1024         0 1154.6  19.8   1   1         0         0 1154.4  19.8     2  1020     4  1008     3  1009 0.99 AcrB/AcrD/AcrF family
MMPL                 PF03176.10   333 sp|Q8ZCV9|MDTC_YERPE -           1024   6.4e-14   51.3  22.8   1   2   7.7e-14   2.9e-10   39.3  11.2    19   313   214   500   199   532 0.73 MMPL family
MMPL                 PF03176.10   333 sp|Q8ZCV9|MDTC_YERPE -           1024   6.4e-14   51.3  22.8   2   2   3.7e-07    0.0014   17.4   3.7    73   303   785  1009   615  1019 0.78 MMPL family
SecD_SecF            PF02355.11   189 sp|Q8ZCV9|MDTC_YERPE -           1024   1.7e-08   33.8  25.0   1   2   1.5e-08   5.5e-05   22.4  10.7    36   186   337   489   314   492 0.76 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|Q8ZCV9|MDTC_YERPE -           1024   1.7e-08   33.8  25.0   2   2   8.1e-07     0.003   16.7   6.3    26   185   845  1007   825  1011 0.86 Protein export membrane protein
Patched              PF02460.13   800 sp|Q8ZCV9|MDTC_YERPE -           1024      0.62    7.9  13.8   1   1   0.00025      0.91    7.3  13.8   651   795   337   486   326   491 0.87 Patched family
MFS_1                PF07690.11   352 sp|Q7CJL1|MDTD_YERPE -            465   2.3e-50  171.2  76.7   1   2   2.2e-47   1.1e-43  149.3  59.2     1   351    15   405    15   406 0.85 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q7CJL1|MDTD_YERPE -            465   2.3e-50  171.2  76.7   2   2   6.5e-13   3.2e-09   35.9   9.5    55   184   320   462   316   465 0.88 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|Q7CJL1|MDTD_YERPE -            465   7.4e-08   30.9  11.9   1   3   1.5e-11   7.4e-08   30.9  11.9    21   186    21   182     4   198 0.82 Transmembrane secretion effector
MFS_3                PF05977.8    524 sp|Q7CJL1|MDTD_YERPE -            465   7.4e-08   30.9  11.9   3   3   0.00012      0.59    8.1   8.3    71   171   323   421   304   457 0.80 Transmembrane secretion effector
MFS_2                PF13347.1    428 sp|Q7CJL1|MDTD_YERPE -            465     0.048   12.0  45.0   1   3   4.9e-06     0.024   13.0   6.2   226   332    11   118     4   132 0.87 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|Q7CJL1|MDTD_YERPE -            465     0.048   12.0  45.0   2   3   1.6e-05     0.077   11.3   4.0   267   335   169   238   153   241 0.89 MFS/sugar transport protein
MFS_1                PF07690.11   352 sp|Q8ZEW3|MDTH_YERPE -            401   1.6e-32  112.6  46.1   1   2   6.8e-27   3.3e-23   81.9  24.9     6   235    20   237    15   240 0.86 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q8ZEW3|MDTH_YERPE -            401   1.6e-32  112.6  46.1   2   2   7.2e-14   3.6e-10   39.1  18.6     3   171   211   385   210   398 0.86 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|Q8ZEW3|MDTH_YERPE -            401   2.1e-06   26.6   2.3   2   4   4.2e-10   2.1e-06   26.6   2.3    63   161    63   158    60   187 0.92 Sugar (and other) transporter
Multi_Drug_Res       PF00893.14    93 sp|Q0WF87|MDTI_YERPE -            109     5e-27   94.1   7.2   1   1   3.1e-30   6.5e-27   93.8   7.2     4    93    10    99     6    99 0.97 Small Multidrug Resistance protein
EmrE                 PF13536.1    113 sp|Q0WF87|MDTI_YERPE -            109     1e-06   28.9  10.4   1   1   5.9e-10   1.2e-06   28.6  10.4    11   106     9   108     4   109 0.79 Multidrug resistance efflux transporter
EamA                 PF00892.15   126 sp|Q0WF87|MDTI_YERPE -            109   6.6e-05   22.9  10.4   1   1   4.2e-08   8.8e-05   22.5  10.4    35   124    20   106     2   108 0.75 EamA-like transporter family
UPF0546              PF10639.4    113 sp|Q0WF87|MDTI_YERPE -            109    0.0011   18.7   0.3   2   2   1.2e-06    0.0025   17.5   0.1    62   112    56   106    42   107 0.92 Uncharacterised protein family UPF0546
UPF0060              PF02694.10   107 sp|Q0WF87|MDTI_YERPE -            109    0.0036   17.3   7.2   1   1   2.2e-06    0.0047   16.9   7.2     9   101    13   106     7   109 0.69 Uncharacterised BCR, YnfA/UPF0060 family
Nuc_sug_transp       PF04142.10   244 sp|Q0WF87|MDTI_YERPE -            109     0.012   14.7   0.6   1   1   5.8e-06     0.012   14.7   0.6    48    89    67   108    55   109 0.87 Nucleotide-sugar transporter
TPT                  PF03151.11   153 sp|Q0WF87|MDTI_YERPE -            109     0.021   14.5   5.8   1   1   3.5e-05     0.074   12.6   5.8   110   150    65   105     6   106 0.84 Triose-phosphate Transporter family
Multi_Drug_Res       PF00893.14    93 sp|Q7CIC6|MDTJ_YERPE -            147   3.2e-22   78.8  14.2   1   1   1.1e-25     4e-22   78.4  14.2     2    92     3    93     2    95 0.97 Small Multidrug Resistance protein
EamA                 PF00892.15   126 sp|Q7CIC6|MDTJ_YERPE -            147     0.084   12.9  15.4   1   1     3e-05      0.11   12.5  15.4    28   124     5   101     1   103 0.83 EamA-like transporter family
IncA                 PF04156.9    191 sp|Q7CIC6|MDTJ_YERPE -            147      0.26   10.8   0.0   2   2   6.9e-05      0.26   10.8   0.0     3    70    45   111    43   136 0.79 IncA protein
EmrE                 PF13536.1    113 sp|Q7CIC6|MDTJ_YERPE -            147      0.31   11.2  12.0   1   1   0.00013      0.47   10.6  12.0    38   106    36   103     2   107 0.75 Multidrug resistance efflux transporter
MatE                 PF01554.13   162 sp|Q8ZDZ8|MDTK_YERPE -            457   1.5e-69  232.7  29.8   1   4   7.5e-39   5.6e-35  120.3   5.6     1   162    17   177    17   177 0.98 MatE
MatE                 PF01554.13   162 sp|Q8ZDZ8|MDTK_YERPE -            457   1.5e-69  232.7  29.8   3   4   1.1e-40   7.9e-37  126.3  16.3     1   162   244   405   244   405 1.00 MatE
Polysacc_synt_C      PF14667.1    146 sp|Q8ZDZ8|MDTK_YERPE -            457   1.8e-10   40.8   2.0   3   4   2.4e-14   1.8e-10   40.8   2.0     4    80   133   215   130   230 0.90 Polysaccharide biosynthesis C-terminal domain
MR_MLE               PF01188.16    67 sp|P58487|MENC_YERPE -            323     1e-10   41.9   0.1   1   1   3.6e-14   2.7e-10   40.6   0.1     4    67   149   214   146   214 0.89 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_C             PF13378.1    111 sp|P58487|MENC_YERPE -            323   5.7e-05   23.0   0.1   2   2     5e-08   0.00037   20.4   0.0     9    72   221   286   214   318 0.77 Enolase C-terminal domain-like
TPP_enzyme_N         PF02776.13   172 sp|Q7CJ76|MEND_YERPE -            567   4.9e-24   84.7   4.0   1   2   1.7e-25   1.3e-21   76.8   0.2     2   125     9   131     8   173 0.85 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|Q7CJ76|MEND_YERPE -            567   9.4e-08   31.7   0.0   2   2   3.2e-11   2.3e-07   30.4   0.0    28   153   422   541   406   541 0.83 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Abhydrolase_6        PF12697.2    228 sp|Q7CJ75|MENH_YERPE -            272   1.5e-23   83.8   7.1   1   1   3.7e-27   1.8e-23   83.6   7.1     1   227    25   253    25   254 0.75 Alpha/beta hydrolase family
Abhydrolase_5        PF12695.2    145 sp|Q7CJ75|MENH_YERPE -            272   2.5e-11   43.5   0.1   1   1   7.1e-15   3.5e-11   43.0   0.1     2   117    25   221    24   249 0.78 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|Q7CJ75|MENH_YERPE -            272   2.1e-09   37.3   0.1   1   1   5.5e-13   2.7e-09   36.9   0.1     4   196    51   230    48   257 0.81 alpha/beta hydrolase fold
Peptidase_M74        PF03411.8    240 sp|Q8ZD40|MEPA_YERPE -            275  3.7e-112  373.3   0.4   1   1  2.9e-116  4.3e-112  373.1   0.4     1   238    35   271    35   273 0.99 Penicillin-insensitive murein endopeptidase
HTS                  PF04204.11   298 sp|Q8ZAR4|META_YERPE -            309  5.6e-131  435.6   0.0   1   1  4.2e-135  6.3e-131  435.5   0.0     1   298     2   299     2   299 1.00 Homoserine O-succinyltransferase
Meth_synt_2          PF01717.13   324 sp|Q8ZAL3|METE_YERPE -            758  4.9e-159  528.5   0.0   2   3   5.2e-10   3.8e-06   26.0   0.0   121   189   155   224   132   291 0.88 Cobalamin-independent synthase, Catalytic domain
Meth_synt_2          PF01717.13   324 sp|Q8ZAL3|METE_YERPE -            758  4.9e-159  528.5   0.0   3   3    4e-154    3e-150  499.6   0.0     1   323   429   751   429   752 1.00 Cobalamin-independent synthase, Catalytic domain
Meth_synt_1          PF08267.7    311 sp|Q8ZAL3|METE_YERPE -            758  5.4e-143  475.8   0.0   1   3  7.6e-131  5.6e-127  423.2   0.0     2   308     5   313     4   316 0.99 Cobalamin-independent synthase, N-terminal domain
Meth_synt_1          PF08267.7    311 sp|Q8ZAL3|METE_YERPE -            758  5.4e-143  475.8   0.0   3   3   2.4e-15   1.8e-11   43.9   0.0   141   285   541   693   529   718 0.82 Cobalamin-independent synthase, N-terminal domain
BPD_transp_1         PF00528.17   185 sp|Q8ZH39|METI_YERPE -            217   7.7e-22   77.6  17.7   1   1   5.2e-26   7.7e-22   77.6  17.7     2   179    32   214    31   217 0.84 Binding-protein-dependent transport system inner membrane component
MetJ                 PF01340.15   104 sp|Q8ZJI8|METJ_YERPE -            105   4.5e-66  219.1   0.1   1   1   6.7e-70     5e-66  218.9   0.1     1   104     2   105     2   105 1.00 Met Apo-repressor, MetJ
AphA_like            PF14557.1    175 sp|Q8ZJI8|METJ_YERPE -            105     0.067   12.7   0.0   1   1     1e-05     0.078   12.5   0.0   100   137    21    58    13    79 0.88 Putative AphA-like transcriptional regulator
S-AdoMet_synt_C      PF02773.11   138 sp|Q8ZHG7|METK_YERPE -            384   3.4e-75  250.3   0.0   1   1   1.4e-78   5.3e-75  249.7   0.0     1   138   233   370   233   370 1.00 S-adenosylmethionine synthetase, C-terminal domain
S-AdoMet_synt_M      PF02772.11   120 sp|Q8ZHG7|METK_YERPE -            384   4.4e-51  171.8   0.0   1   1   3.1e-54   1.2e-50  170.4   0.0     2   120   114   231   113   231 0.99 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_N      PF00438.15   100 sp|Q8ZHG7|METK_YERPE -            384   1.8e-43  146.7   0.1   1   1   8.9e-47   3.3e-43  145.9   0.1     2   100     3   101     2   101 0.99 S-adenosylmethionine synthetase, N-terminal domain
ABC_tran             PF00005.22   137 sp|Q8ZH38|METN1_YERPE -            343   2.3e-35  121.8   0.0   1   1   3.6e-38   3.6e-35  121.2   0.0     1   137    21   169    21   169 0.93 ABC transporter
NIL                  PF09383.5     76 sp|Q8ZH38|METN1_YERPE -            343   3.6e-21   74.5   0.1   1   1   7.6e-24   7.5e-21   73.4   0.1     3    76   267   340   265   340 0.98 NIL domain
AAA_21               PF13304.1    303 sp|Q8ZH38|METN1_YERPE -            343   1.4e-12   48.1   0.0   1   2   0.00026      0.26   11.2   0.0     3    22    35    54    33    88 0.83 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZH38|METN1_YERPE -            343   1.4e-12   48.1   0.0   2   2   1.7e-11   1.6e-08   34.8   0.0   220   298   124   200    92   205 0.84 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZH38|METN1_YERPE -            343   1.6e-07   30.8   0.3   1   1   4.6e-10   4.5e-07   29.3   0.3    26   213    33   215    26   221 0.78 RecF/RecN/SMC N terminal domain
AAA_10               PF12846.2    304 sp|Q8ZH38|METN1_YERPE -            343     1e-06   28.4   0.1   1   2   0.00059      0.58    9.5   0.1     6    27    36    58    32    87 0.82 AAA-like domain
AAA_10               PF12846.2    304 sp|Q8ZH38|METN1_YERPE -            343     1e-06   28.4   0.1   2   2   2.9e-06    0.0028   17.1   0.0   215   266   153   204    65   221 0.87 AAA-like domain
AAA_22               PF13401.1    131 sp|Q8ZH38|METN1_YERPE -            343   3.6e-06   27.1   0.9   1   1   1.8e-08   1.8e-05   24.8   0.9     8   129    35   205    30   207 0.72 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZH38|METN1_YERPE -            343   0.00017   21.6   1.0   1   1   3.6e-07   0.00036   20.5   0.9    26   179    33   192    16   204 0.59 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|Q8ZH38|METN1_YERPE -            343    0.0024   17.7   0.1   1   1   1.3e-05     0.013   15.3   0.1    32    89   140   184   130   185 0.79 Putative exonuclease SbcCD, C subunit
MMR_HSR1             PF01926.18   116 sp|Q8ZH38|METN1_YERPE -            343    0.0026   17.7   0.0   1   1   4.8e-06    0.0047   16.8   0.0     3    68    35   142    33   216 0.65 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|Q8ZH38|METN1_YERPE -            343    0.0054   16.1   0.8   1   1   0.00016      0.16   11.3   0.8    29    58    27    54    19   201 0.54 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZH38|METN1_YERPE -            343    0.0066   15.9   0.0   1   1   1.3e-05     0.013   15.0   0.0    22    40    30    48    20    61 0.82 P-loop containing region of AAA domain
ABC_ATPase           PF09818.4    448 sp|Q8ZH38|METN1_YERPE -            343     0.019   13.5   0.3   2   2   0.00042      0.41    9.1   0.0   315   352   133   170   112   229 0.92 Predicted ATPase of the ABC class
DUF258               PF03193.11   161 sp|Q8ZH38|METN1_YERPE -            343     0.025   13.7   0.0   1   1   4.8e-05     0.047   12.8   0.0    35    55    30    51     4    83 0.77 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q8ZH38|METN1_YERPE -            343     0.031   14.1   0.0   1   1   6.3e-05     0.062   13.1   0.0     4    96    36   187    34   207 0.62 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZH38|METN1_YERPE -            343      0.29   11.9   2.2   1   1   0.00046      0.46   11.3   0.8     1    16    33    48    33    50 0.90 AAA domain
ABC_tran             PF00005.22   137 sp|Q7CHF8|METN2_YERPE -            328   9.3e-35  119.9   0.0   1   1   1.3e-37   1.2e-34  119.5   0.0     1   137    21   169    21   169 0.91 ABC transporter
NIL                  PF09383.5     76 sp|Q7CHF8|METN2_YERPE -            328   5.1e-14   51.5   0.1   1   1   1.2e-16   1.1e-13   50.5   0.1     3    75   253   327   251   328 0.91 NIL domain
AAA_21               PF13304.1    303 sp|Q7CHF8|METN2_YERPE -            328   1.9e-10   41.2   0.1   1   2   3.3e-06    0.0031   17.5   0.1     3    25    35    65    33   110 0.64 AAA domain
AAA_21               PF13304.1    303 sp|Q7CHF8|METN2_YERPE -            328   1.9e-10   41.2   0.1   2   2   8.3e-08   7.7e-05   22.7   0.0   219   300   103   202    65   205 0.78 AAA domain
AAA_10               PF12846.2    304 sp|Q7CHF8|METN2_YERPE -            328   1.6e-06   27.8   0.3   1   2   0.00028      0.26   10.6   0.1     5    24    35    55    31    64 0.77 AAA-like domain
AAA_10               PF12846.2    304 sp|Q7CHF8|METN2_YERPE -            328   1.6e-06   27.8   0.3   2   2   8.5e-06    0.0079   15.6   0.0   162   267    82   205    55   219 0.75 AAA-like domain
ABC_ATPase           PF09818.4    448 sp|Q7CHF8|METN2_YERPE -            328   2.8e-05   22.9   0.1   1   2   5.8e-06    0.0054   15.3   0.0   240   282    26    72    20    86 0.83 Predicted ATPase of the ABC class
SMC_N                PF02463.14   220 sp|Q7CHF8|METN2_YERPE -            328   4.5e-05   22.7   0.2   1   1   1.7e-07   0.00016   20.9   0.2    26   201    33   203    21   216 0.78 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|Q7CHF8|METN2_YERPE -            328   0.00048   20.1   1.4   1   1     1e-06   0.00093   19.2   0.7    23   179    30   188    20   197 0.65 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|Q7CHF8|METN2_YERPE -            328   0.00073   19.4   0.0   1   1   1.2e-06    0.0011   18.8   0.0     2    60    34   133    33   212 0.72 50S ribosome-binding GTPase
AAA_22               PF13401.1    131 sp|Q7CHF8|METN2_YERPE -            328   0.00073   19.6   0.8   1   1   2.6e-05     0.024   14.7   0.8     9   124    36   199    28   206 0.70 AAA domain
AAA_29               PF13555.1     62 sp|Q7CHF8|METN2_YERPE -            328    0.0018   17.7   0.0   1   1   3.5e-06    0.0033   16.9   0.0    18    45    27    53    20    64 0.76 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|Q7CHF8|METN2_YERPE -            328    0.0047   16.1   0.0   1   1   7.8e-06    0.0072   15.5   0.0    36    67    32    63    18    87 0.76 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|Q7CHF8|METN2_YERPE -            328      0.01   16.1   0.0   1   1   1.8e-05     0.016   15.5   0.0    15    41    26    53    20    97 0.85 AAA domain
SbcCD_C              PF13558.1     90 sp|Q7CHF8|METN2_YERPE -            328     0.013   15.3   0.6   1   1   0.00011       0.1   12.5   0.6    62    89   157   184   131   185 0.74 Putative exonuclease SbcCD, C subunit
AAA_25               PF13481.1    194 sp|Q7CHF8|METN2_YERPE -            328     0.027   13.8   0.0   1   2   0.00021       0.2   11.0   0.0    30    50    28    48    24    56 0.92 AAA domain
Miro                 PF08477.8    119 sp|Q7CHF8|METN2_YERPE -            328      0.11   13.0   0.0   1   1    0.0002      0.19   12.2   0.0     3    37    35    68    34   101 0.73 Miro-like protein
MobB                 PF03205.9    140 sp|Q7CHF8|METN2_YERPE -            328      0.16   11.7   0.0   1   1   0.00031      0.29   10.8   0.0     2    20    33    51    32    59 0.86 Molybdopterin guanine dinucleotide synthesis protein B
Lipoprotein_9        PF03180.9    237 sp|Q8ZH40|METQ_YERPE -            271   3.7e-98  327.1   1.3   1   1  1.7e-101   4.2e-98  326.9   1.3     1   237    33   271    33   271 0.99 NLPA lipoprotein
OpuAC                PF04069.7    257 sp|Q8ZH40|METQ_YERPE -            271     9e-05   21.9   0.2   1   2   6.3e-08   0.00016   21.1   0.0     2    68    32    98    31   171 0.81 Substrate binding domain of ABC-type glycine betaine transport system
Phosphonate-bd       PF12974.2    243 sp|Q8ZH40|METQ_YERPE -            271    0.0015   17.9   0.0   1   1   1.3e-06    0.0032   16.8   0.0    15   111    44   136    39   150 0.78 ABC transporter, phosphonate, periplasmic substrate-binding protein
NMT1                 PF09084.6    216 sp|Q8ZH40|METQ_YERPE -            271     0.002   17.7   0.0   1   2   5.6e-05      0.14   11.7   0.0    18    74    56   114    55   153 0.85 NMT1/THI5 like
SBP_bac_3            PF00497.15   225 sp|Q8ZH40|METQ_YERPE -            271     0.058   12.6   2.8   1   2   0.00027      0.67    9.1   0.1   112   188    34   115     6   124 0.71 Bacterial extracellular solute-binding proteins, family 3
SBP_bac_3            PF00497.15   225 sp|Q8ZH40|METQ_YERPE -            271     0.058   12.6   2.8   2   2   0.00026      0.64    9.2   2.1    27   220    47   261    45   266 0.68 Bacterial extracellular solute-binding proteins, family 3
FMN_red              PF03358.10   152 sp|Q8ZH40|METQ_YERPE -            271      0.12   11.8   0.0   1   1   8.2e-05       0.2   11.1   0.0    16    46    42    76    33    99 0.77 NADPH-dependent FMN reductase
ABC_tran             PF00005.22   137 sp|Q7CHQ3|MGLA_YERPE -            506     4e-49  166.4   0.2   1   2   2.9e-32   3.4e-29  101.9   0.0     1   137    29   178    29   178 0.97 ABC transporter
ABC_tran             PF00005.22   137 sp|Q7CHQ3|MGLA_YERPE -            506     4e-49  166.4   0.2   2   2   4.3e-20   4.9e-17   62.4   0.1     2   136   280   434   279   435 0.76 ABC transporter
AAA_21               PF13304.1    303 sp|Q7CHQ3|MGLA_YERPE -            506   4.9e-11   43.1   2.4   1   2   6.4e-09   7.3e-06   26.1   0.4     2   297    42   207    41   209 0.62 AAA domain
AAA_21               PF13304.1    303 sp|Q7CHQ3|MGLA_YERPE -            506   4.9e-11   43.1   2.4   2   2   0.00027      0.31   10.9   0.1   165   294   363   461   306   470 0.64 AAA domain
AAA_15               PF13175.1    415 sp|Q7CHQ3|MGLA_YERPE -            506   2.4e-06   26.8   6.2   1   2   3.6e-07   0.00041   19.5   0.2    17   160    31   193    17   200 0.56 AAA ATPase domain
DUF258               PF03193.11   161 sp|Q7CHQ3|MGLA_YERPE -            506    0.0025   17.0   0.6   1   3   1.5e-05     0.018   14.2   0.0    25    64    28    68     8    92 0.83 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|Q7CHQ3|MGLA_YERPE -            506    0.0032   16.9   0.0   1   1   8.2e-06    0.0094   15.4   0.0    18    40    35    56    28    61 0.79 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|Q7CHQ3|MGLA_YERPE -            506    0.0033   17.7   1.7   1   1   7.9e-06     0.009   16.3   0.3    20    40    40    60    21   138 0.82 AAA domain
AAA_16               PF13191.1    185 sp|Q7CHQ3|MGLA_YERPE -            506    0.0059   16.6   0.0   1   1     1e-05     0.011   15.6   0.0    28    88    43    99    29   219 0.78 AAA ATPase domain
SMC_N                PF02463.14   220 sp|Q7CHQ3|MGLA_YERPE -            506    0.0065   15.7   3.5   1   2   6.2e-06    0.0071   15.5   1.0    25   207    40   218    22   229 0.70 RecF/RecN/SMC N terminal domain
DUF2813              PF11398.3    373 sp|Q7CHQ3|MGLA_YERPE -            506     0.028   13.4   0.0   1   1   3.6e-05     0.041   12.9   0.0    24    67    41    84    17   149 0.80 Protein of unknown function (DUF2813)
Tox-REase-7          PF15649.1     87 sp|Q7CHQ3|MGLA_YERPE -            506     0.061   13.4   0.0   1   1   0.00014      0.16   12.1   0.0    30    54   251   275   237   281 0.86 Restriction endonuclease fold toxin 7
MgrB                 PF13998.1     29 sp|P0DM79|MGRB_YERPE -             50   4.2e-17   61.5   0.6   2   2   5.7e-21   4.2e-17   61.5   0.6     1    29    22    50    22    50 0.99 MgrB protein
FhuF_C               PF11575.3     22 sp|P0DM79|MGRB_YERPE -             50     0.086   12.4   1.5   1   1   1.8e-05      0.13   11.9   1.5     3    16    18    31    17    32 0.83 FhuF 2Fe-2S C-terminal domain
MGS                  PF02142.17    95 sp|Q8ZG71|MGSA_YERPE -            154     5e-18   64.8   0.0   1   1   4.9e-22   7.3e-18   64.2   0.0     3    95    27   118    25   118 0.93 MGS-like domain
IPPT                 PF01715.12   253 sp|Q8ZIW3|MIAA_YERPE -            313  2.6e-103  344.4   0.0   1   1  1.6e-106    3e-103  344.2   0.0     2   252    45   297    44   298 0.99 IPP transferase
AAA_17               PF13207.1    121 sp|Q8ZIW3|MIAA_YERPE -            313   1.5e-05   25.7   0.0   1   1   1.8e-08   3.4e-05   24.6   0.0     2    64    13    76    12   174 0.67 AAA domain
IPT                  PF01745.11   233 sp|Q8ZIW3|MIAA_YERPE -            313   3.8e-05   22.9   0.0   1   1   3.6e-08   6.6e-05   22.1   0.0     5    99    14   108    11   120 0.80 Isopentenyl transferase
AAA_33               PF13671.1    143 sp|Q8ZIW3|MIAA_YERPE -            313   0.00064   19.6   0.0   1   2     2e-06    0.0038   17.1   0.0     2    56    13    70    12   161 0.75 AAA domain
Zeta_toxin           PF06414.7    201 sp|Q8ZIW3|MIAA_YERPE -            313    0.0046   16.0   0.0   1   1   4.5e-06    0.0083   15.2   0.0    12    49     6    42     1    46 0.86 Zeta toxin
AAA_16               PF13191.1    185 sp|Q8ZIW3|MIAA_YERPE -            313    0.0075   16.2   0.1   1   1   8.7e-06     0.016   15.1   0.1    23    84     9    71     5   224 0.69 AAA ATPase domain
AAA_18               PF13238.1    129 sp|Q8ZIW3|MIAA_YERPE -            313     0.011   15.9   0.0   1   1   1.7e-05     0.031   14.5   0.0     1    29    13    44    13    88 0.79 AAA domain
TIP49                PF06068.8    398 sp|Q8ZIW3|MIAA_YERPE -            313      0.12   11.0   0.0   1   1   9.8e-05      0.18   10.4   0.0    52    86    12    44     9    54 0.81 TIP49 C-terminus
Radical_SAM          PF04055.16   166 sp|Q0WDR2|MIAB_YERPE -            474   3.1e-30  105.5   0.0   1   1   1.4e-33   5.1e-30  104.8   0.0     1   166   151   325   151   325 0.93 Radical SAM superfamily
UPF0004              PF00919.15    98 sp|Q0WDR2|MIAB_YERPE -            474   3.8e-28   97.1   0.0   1   1     2e-31   7.4e-28   96.2   0.0     1    98     4   104     4   104 0.95 Uncharacterized protein family UPF0004
TRAM                 PF01938.15    61 sp|Q0WDR2|MIAB_YERPE -            474   1.1e-17   63.5   0.3   1   1   7.1e-21   2.6e-17   62.3   0.3     1    61   378   440   378   440 0.97 TRAM domain
B12-binding          PF02310.14   121 sp|Q0WDR2|MIAB_YERPE -            474     0.046   13.6   0.0   1   2   7.5e-05      0.28   11.0   0.0    73   113    67   106    39   111 0.83 B12 binding domain
MinC_C               PF03775.11   105 sp|Q8ZES5|MINC_YERPE -            228   2.7e-39  133.0   0.0   1   1   5.4e-43     4e-39  132.4   0.0     1   105   122   227   122   227 0.98 Septum formation inhibitor MinC, C-terminal domain
MinC_N               PF05209.8     99 sp|Q8ZES5|MINC_YERPE -            228   4.5e-29  100.1   0.0   1   1     9e-33   6.7e-29   99.5   0.0     1    97     1   102     1   104 0.95 Septum formation inhibitor MinC, N-terminal domain
MinE                 PF03776.9     70 sp|Q8ZES7|MINE_YERPE -             89   6.4e-27   92.8   0.1   1   1   9.9e-31   7.4e-27   92.6   0.1     1    70    14    83    14    83 0.94 Septum formation topological specificity factor MinE
RBD                  PF02196.10    71 sp|Q8ZES7|MINE_YERPE -             89     0.021   14.5   0.0   1   1   4.8e-06     0.036   13.8   0.0    24    47    44    67    43    86 0.79 Raf-like Ras-binding domain
DUF3393              PF11873.3    204 sp|Q8ZHE6|MLTC_YERPE -            358   1.1e-73  247.0   0.0   1   1   6.6e-77   1.6e-73  246.5   0.0     1   204     2   190     2   190 0.98 Domain of unknown function (DUF3393)
SLT                  PF01464.15   121 sp|Q8ZHE6|MLTC_YERPE -            358   7.9e-30  102.8   0.1   1   1   5.3e-33   1.3e-29  102.1   0.1     2   116   194   316   193   321 0.95 Transglycosylase SLT domain
Lysozyme_like        PF13702.1    160 sp|Q8ZHE6|MLTC_YERPE -            358   0.00051   19.5   0.2   1   1   1.2e-06     0.003   17.0   0.2     3    98   186   303   184   316 0.70 Lysozyme-like
SLT_2                PF13406.1    262 sp|Q8ZHE6|MLTC_YERPE -            358     0.017   14.0   0.0   1   1   1.8e-05     0.044   12.7   0.0    70   103   188   221   160   239 0.87 Transglycosylase SLT domain
Pectate_lyase22      PF14583.1    386 sp|Q8ZHE6|MLTC_YERPE -            358       0.1   11.0   0.0   1   1   7.2e-05      0.18   10.2   0.0   254   324    64   134    54   147 0.89 Oligogalacturonate lyase
SBP_bac_3            PF00497.15   225 sp|Q74SQ6|MLTF_YERPE -            486     2e-35  122.0   0.0   1   1   7.6e-39   2.8e-35  121.6   0.0     8   224    50   266    45   267 0.92 Bacterial extracellular solute-binding proteins, family 3
SLT                  PF01464.15   121 sp|Q74SQ6|MLTF_YERPE -            486   5.7e-27   93.6   0.0   1   1   2.9e-30   1.1e-26   92.7   0.0     6   118   295   403   291   406 0.95 Transglycosylase SLT domain
Lysozyme_like        PF13702.1    160 sp|Q74SQ6|MLTF_YERPE -            486    0.0028   17.1   0.0   1   1   1.6e-06    0.0058   16.1   0.0    57   100   346   390   325   446 0.88 Lysozyme-like
DUF1537              PF07005.6    223 sp|Q74SQ6|MLTF_YERPE -            486      0.16   11.6   0.0   1   1   9.1e-05      0.34   10.5   0.0    38   113    94   168    93   193 0.79 Protein of unknown function, DUF1537
tRNA_Me_trans        PF03054.11   356 sp|Q8ZFQ5|MNMA_YERPE -            371  8.6e-147  488.3   0.0   1   1  3.9e-150  9.8e-147  488.1   0.0     1   356     7   361     7   361 0.98 tRNA methyl transferase
NAD_synthase         PF02540.12   242 sp|Q8ZFQ5|MNMA_YERPE -            371   5.6e-10   38.5   0.0   1   2   5.2e-12   1.3e-08   34.0   0.0    16    82     4    76     1    96 0.77 NAD synthase
Asn_synthase         PF00733.16   255 sp|Q8ZFQ5|MNMA_YERPE -            371   1.3e-07   31.3   0.0   1   1   8.1e-11     2e-07   30.7   0.0    16    92     5    88     2   144 0.91 Asparagine synthase
ThiI                 PF02568.9    197 sp|Q8ZFQ5|MNMA_YERPE -            371   2.2e-07   30.5   0.0   1   1   1.3e-10   3.3e-07   29.9   0.0     2    74     5    77     4   130 0.76 Thiamine biosynthesis protein (ThiI)
QueC                 PF06508.8    210 sp|Q8ZFQ5|MNMA_YERPE -            371   0.00045   19.5   0.0   1   2   7.6e-07    0.0019   17.5   0.0     1    64     8    73     8   139 0.77 Queuosine biosynthesis protein QueC
ATP_bind_3           PF01171.15   182 sp|Q8ZFQ5|MNMA_YERPE -            371     0.027   13.9   0.2   1   2   8.4e-05      0.21   11.0   0.1     1    67     8    76     8   136 0.73 PP-loop family
Methyltransf_30      PF05430.6    124 sp|Q8ZD36|MNMC_YERPE -            689   6.2e-50  168.0   0.0   1   1   6.8e-53   1.3e-49  167.0   0.0     1   123   118   244   118   245 0.98 S-adenosyl-L-methionine-dependent methyltransferase
DAO                  PF01266.19   358 sp|Q8ZD36|MNMC_YERPE -            689   1.4e-48  165.6   2.2   1   1   2.3e-51   4.3e-48  164.0   2.2     1   357   266   644   266   645 0.88 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|Q8ZD36|MNMC_YERPE -            689   0.00053   20.1   0.1   2   2   0.00018      0.34   10.9   0.0    83   151   413   484   363   503 0.79 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|Q8ZD36|MNMC_YERPE -            689     0.015   15.3   0.1   1   2   8.9e-05      0.16   11.9   0.1     1    25   269   293   269   334 0.87 NAD(P)-binding Rossmann-like domain
Pyr_redox_2          PF07992.9    201 sp|Q8ZD36|MNMC_YERPE -            689       0.1   12.4   0.0   1   1   0.00016       0.3   10.9   0.0     1    75   266   347   266   374 0.78 Pyridine nucleotide-disulphide oxidoreductase
ApbA                 PF02558.11   151 sp|Q8ZD36|MNMC_YERPE -            689      0.13   11.6   0.6   1   1   0.00018      0.34   10.3   0.6     1    31   267   297   267   307 0.90 Ketopantoate reductase PanE/ApbA
TrmE_N               PF10396.4    114 sp|Q8Z9U2|MNME_YERPE -            454     1e-42  144.7   0.0   1   1   3.7e-45   2.7e-42  143.3   0.0     1   114     6   120     6   120 0.99 GTP-binding protein TrmE N-terminus
MMR_HSR1             PF01926.18   116 sp|Q8Z9U2|MNME_YERPE -            454     7e-23   80.7   0.0   1   1     2e-25   1.5e-22   79.7   0.0     1    94   218   310   218   336 0.78 50S ribosome-binding GTPase
GTPase_Cys_C         PF12631.2     73 sp|Q8Z9U2|MNME_YERPE -            454   4.2e-20   71.9   0.7   1   1   2.6e-22   1.9e-19   69.8   0.1     2    73   380   451   379   451 0.98 Catalytic cysteine-containing C-terminus of GTPase, MnmE
Miro                 PF08477.8    119 sp|Q8Z9U2|MNME_YERPE -            454   1.8e-10   41.3   0.0   1   1   6.5e-13   4.8e-10   39.9   0.0     1   119   218   338   218   338 0.87 Miro-like protein
FeoB_N               PF02421.13   156 sp|Q8Z9U2|MNME_YERPE -            454   2.3e-08   33.4   0.0   1   1   8.5e-11   6.3e-08   32.0   0.0     2   154   218   370   217   372 0.81 Ferrous iron transport protein B
Dynamin_N            PF00350.18   168 sp|Q8Z9U2|MNME_YERPE -            454   1.9e-05   24.5   0.0   1   2     9e-07   0.00066   19.5   0.0     1    35   219   254   219   258 0.82 Dynamin family
DUF258               PF03193.11   161 sp|Q8Z9U2|MNME_YERPE -            454   6.7e-05   22.1   0.0   1   1   2.5e-07   0.00018   20.7   0.0    33   120   213   296   192   299 0.78 Protein of unknown function, DUF258
AIG1                 PF04548.11   212 sp|Q8Z9U2|MNME_YERPE -            454   0.00041   19.5   0.0   1   1     1e-06   0.00074   18.6   0.0     2    70   218   285   217   312 0.85 AIG1 family
Ras                  PF00071.17   162 sp|Q8Z9U2|MNME_YERPE -            454   0.00062   19.1   0.0   1   1   1.5e-06    0.0011   18.3   0.0     1   119   218   350   218   417 0.70 Ras family
ABC_tran             PF00005.22   137 sp|Q8Z9U2|MNME_YERPE -            454    0.0012   19.1   0.0   1   1   3.3e-06    0.0024   18.1   0.0     8    43   213   248   211   310 0.76 ABC transporter
AAA_28               PF13521.1    163 sp|Q8Z9U2|MNME_YERPE -            454    0.0017   18.3   0.0   1   1   4.8e-06    0.0035   17.3   0.0     1    61   218   283   218   312 0.62 AAA domain
AAA_17               PF13207.1    121 sp|Q8Z9U2|MNME_YERPE -            454    0.0046   17.7   0.0   1   1   1.9e-05     0.014   16.1   0.0     1    62   218   294   218   336 0.62 AAA domain
AAA_18               PF13238.1    129 sp|Q8Z9U2|MNME_YERPE -            454    0.0084   16.4   0.0   1   1     2e-05     0.015   15.5   0.0     1    69   219   292   219   327 0.62 AAA domain
Hydantoinase_A       PF01968.13   290 sp|Q8Z9U2|MNME_YERPE -            454     0.012   14.7   0.0   2   2   0.00088      0.66    9.0   0.0    62    92   225   255   212   274 0.81 Hydantoinase/oxoprolinase
Arf                  PF00025.16   175 sp|Q8Z9U2|MNME_YERPE -            454     0.015   14.5   0.0   1   1   4.8e-05     0.036   13.3   0.0    12   128   214   340   205   376 0.67 ADP-ribosylation factor family
AAA_25               PF13481.1    194 sp|Q8Z9U2|MNME_YERPE -            454      0.02   14.3   0.0   1   1   4.8e-05     0.036   13.4   0.0    28    58   211   241   171   312 0.88 AAA domain
Zeta_toxin           PF06414.7    201 sp|Q8Z9U2|MNME_YERPE -            454     0.037   13.1   0.0   1   1   8.4e-05     0.062   12.3   0.0    19    85   219   305   208   313 0.73 Zeta toxin
Gtr1_RagA            PF04670.7    232 sp|Q8Z9U2|MNME_YERPE -            454      0.04   13.0   0.0   1   1   0.00015      0.11   11.6   0.0     1   103   218   322   218   340 0.82 Gtr1/RagA G protein conserved region
SRPRB                PF09439.5    181 sp|Q8Z9U2|MNME_YERPE -            454     0.088   12.0   0.0   1   1   0.00019      0.14   11.3   0.0     5    88   218   308   214   340 0.71 Signal recognition particle receptor beta subunit
GIDA                 PF01134.17   392 sp|Q8Z9R8|MNMG_YERPE -            629  9.7e-169  561.3   0.0   1   1  9.9e-172  1.3e-168  560.8   0.0     1   391     8   398     8   399 0.99 Glucose inhibited division protein A
GIDA_assoc_3         PF13932.1     72 sp|Q8Z9R8|MNMG_YERPE -            629     5e-31  106.5   0.5   1   1   1.2e-33   1.6e-30  104.9   0.1     1    72   546   617   546   617 0.99 GidA associated domain 3
FAD_binding_2        PF00890.19   417 sp|Q8Z9R8|MNMG_YERPE -            629     4e-08   32.5   3.1   1   2   1.5e-07    0.0002   20.3   0.5     1    30     8    37     8    53 0.92 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|Q8Z9R8|MNMG_YERPE -            629     4e-08   32.5   3.1   2   2     4e-05     0.053   12.3   0.1   141   202   100   158    60   171 0.76 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|Q8Z9R8|MNMG_YERPE -            629   1.5e-07   30.9   2.0   1   1   1.9e-10   2.6e-07   30.1   2.0     1   142     8   151     8   152 0.59 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|Q8Z9R8|MNMG_YERPE -            629   1.9e-07   30.3   2.4   1   2   6.9e-05     0.093   11.6   0.5     1    29     8    36     8    56 0.91 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|Q8Z9R8|MNMG_YERPE -            629   1.9e-07   30.3   2.4   2   2   6.9e-07   0.00093   18.1   0.1   154   203   109   159    82   165 0.77 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|Q8Z9R8|MNMG_YERPE -            629   2.3e-05   24.3   0.3   1   1   3.4e-08   4.6e-05   23.3   0.3     1   119     8   156     8   165 0.56 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|Q8Z9R8|MNMG_YERPE -            629   2.3e-05   23.0   1.7   1   3   1.3e-06    0.0018   16.8   0.2     1    32     7    38     7    48 0.91 HI0933-like protein
Thi4                 PF01946.12   230 sp|Q8Z9R8|MNMG_YERPE -            629    0.0087   15.1   0.9   1   1   5.5e-05     0.074   12.1   0.9    18   137     7   142     4   152 0.65 Thi4 family
Pyr_redox            PF00070.22    80 sp|Q8Z9R8|MNMG_YERPE -            629    0.0094   16.3   0.2   1   1   2.4e-05     0.032   14.6   0.2     2    35     9    42     8    62 0.79 Pyridine nucleotide-disulphide oxidoreductase
AlaDh_PNT_C          PF01262.16   168 sp|Q8Z9R8|MNMG_YERPE -            629     0.048   13.2   0.8   1   1   6.3e-05     0.084   12.4   0.0    22    58     8    44     5    50 0.87 Alanine dehydrogenase/PNT, C-terminal domain
FAD_binding_3        PF01494.14   356 sp|Q8Z9R8|MNMG_YERPE -            629      0.11   11.4   0.6   1   2   0.00036      0.49    9.3   0.2     2    33     7    38     6   143 0.93 FAD binding domain
Nramp                PF01566.13   358 sp|Q8ZCK2|MNTH_YERPE -            409  1.8e-122  408.5  32.0   1   1  1.5e-126  2.3e-122  408.2  32.0     1   356    38   382    38   384 0.98 Natural resistance-associated macrophage protein
DUF204               PF02659.10    67 sp|Q8ZFF8|MNTP_YERPE -            189   3.9e-40  135.8  20.9   1   2   5.2e-25   1.3e-21   76.4   1.7     1    67    13    81    13    81 0.98 Domain of unknown function DUF
DUF204               PF02659.10    67 sp|Q8ZFF8|MNTP_YERPE -            189   3.9e-40  135.8  20.9   2   2     2e-21     5e-18   64.9  11.7     1    67   114   177   114   177 0.99 Domain of unknown function DUF
Clostridium_P47      PF06597.6    456 sp|Q8ZFF8|MNTP_YERPE -            189      0.14   10.6   0.8   1   1   7.8e-05      0.19   10.1   0.8   359   406    97   145    83   161 0.81 Clostridium P-47 protein
PGG                  PF13962.1    113 sp|Q8ZFF8|MNTP_YERPE -            189      0.14   11.7   4.2   2   2   3.3e-05     0.081   12.5   0.8    45   104    94   153    88   158 0.72 Domain of unknown function
Pam17                PF08566.5    174 sp|Q8ZFF8|MNTP_YERPE -            189      0.16   11.6   0.8   1   1   0.00013      0.32   10.6   0.8    37    95   102   161    90   170 0.57 Mitochondrial import protein Pam17
Mob_synth_C          PF06463.8    128 sp|Q8ZGW5|MOAA_YERPE -            326     3e-37  127.1   0.0   1   1   1.9e-40   4.8e-37  126.5   0.0     1   127   183   309   183   310 0.98 Molybdenum Cofactor Synthesis C
Radical_SAM          PF04055.16   166 sp|Q8ZGW5|MOAA_YERPE -            326   3.3e-27   95.6   0.0   1   1   1.9e-30   4.7e-27   95.1   0.0     2   166    18   178    17   178 0.97 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|Q8ZGW5|MOAA_YERPE -            326   1.4e-06   28.4   0.0   1   1   1.3e-09   3.1e-06   27.3   0.0    15   116    23   122    12   124 0.85 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|Q8ZGW5|MOAA_YERPE -            326   7.4e-06   25.9   0.0   1   2   1.2e-08     3e-05   24.0   0.0     6    92    21   102    14   123 0.71 4Fe-4S single cluster domain
MoaC                 PF01967.16   136 sp|Q8ZGW4|MOAC_YERPE -            159     9e-59  197.0   2.4   1   1   1.4e-62     1e-58  196.8   2.4     1   136    15   150    15   150 1.00 MoaC family
OmdA                 PF13376.1     63 sp|Q8ZGW4|MOAC_YERPE -            159      0.24   11.1   1.2   1   2   7.1e-05      0.52    9.9   0.1    41    60    19    38    13    40 0.87 Bacteriocin-protection, YdeI or OmpD-Associated
MoaE                 PF02391.12   117 sp|Q8ZGW2|MOAE_YERPE -            151   1.5e-37  128.0   0.0   1   1   1.2e-41   1.7e-37  127.7   0.0     2   116     7   122     6   123 0.96 MoaE protein
NTP_transf_3         PF12804.2    160 sp|Q8ZJS4|MOBA_YERPE -            195   4.1e-36  124.4   0.0   1   1   6.4e-40   4.7e-36  124.2   0.0     1   154     7   156     7   167 0.89 MobA-like NTP transferase domain
CTP_transf_3         PF02348.14   217 sp|Q8ZJS4|MOBA_YERPE -            195     0.035   13.7   0.0   1   2   9.9e-06     0.074   12.6   0.0     3    34     8    41     6    52 0.84 Cytidylyltransferase
ABC_tran             PF00005.22   137 sp|Q8ZGX6|MODC_YERPE -            359   1.2e-28  100.1   0.0   1   1   1.5e-31   1.8e-28   99.5   0.0     4   136    17   156    15   157 0.95 ABC transporter
TOBE                 PF03459.12    64 sp|Q8ZGX6|MODC_YERPE -            359   7.5e-18   64.3   0.0   2   2   3.8e-19   4.7e-16   58.6   0.0     1    62   290   350   290   351 0.97 TOBE domain
AAA_21               PF13304.1    303 sp|Q8ZGX6|MODC_YERPE -            359   6.7e-09   36.1   0.4   1   2   3.2e-05      0.04   13.8   0.2     1    25    26    54    26    84 0.74 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZGX6|MODC_YERPE -            359   6.7e-09   36.1   0.4   2   2   3.5e-07   0.00043   20.3   0.0   233   302   125   193   113   194 0.90 AAA domain
AAA_15               PF13175.1    415 sp|Q8ZGX6|MODC_YERPE -            359   2.5e-06   26.8   0.0   2   2   2.2e-07   0.00028   20.0   0.0   372   411   149   188   123   190 0.87 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q8ZGX6|MODC_YERPE -            359    0.0019   18.5   0.0   1   1   2.3e-06    0.0028   17.9   0.0    17    39    21    44     4    68 0.84 AAA domain
DUF258               PF03193.11   161 sp|Q8ZGX6|MODC_YERPE -            359    0.0051   16.0   0.1   1   1   6.8e-06    0.0084   15.3   0.1    33    57    21    46     4    60 0.77 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|Q8ZGX6|MODC_YERPE -            359     0.038   13.5   0.1   1   1   7.3e-05      0.09   12.3   0.1    18    51    20    52    11    60 0.77 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|Q8ZGX6|MODC_YERPE -            359     0.066   13.3   0.1   1   2   0.00032      0.39   10.8   0.0     4    22    24    42    19    66 0.92 AAA domain
AAA_25               PF13481.1    194 sp|Q8ZGX6|MODC_YERPE -            359     0.086   12.2   0.0   1   2    0.0005      0.62    9.4   0.0    27    51    18    42     4    96 0.77 AAA domain
AAA_10               PF12846.2    304 sp|Q8ZGX6|MODC_YERPE -            359       0.1   12.0   0.1   1   2   0.00069      0.85    8.9   0.1     3    22    26    45    24    61 0.84 AAA-like domain
TOBE                 PF03459.12    64 sp|P58497|MODE_YERPE -            263   7.2e-31  106.0   0.7   1   2   6.6e-21     2e-17   63.0   0.0     1    64   124   188   124   188 0.98 TOBE domain
TOBE                 PF03459.12    64 sp|P58497|MODE_YERPE -            263   7.2e-31  106.0   0.7   2   2   3.9e-14   1.2e-10   41.3   0.1     3    64   198   259   196   259 0.97 TOBE domain
HTH_1                PF00126.22    60 sp|P58497|MODE_YERPE -            263     2e-06   27.4   0.0   1   1   1.8e-09   5.4e-06   26.0   0.0     2    60    20    83    19    83 0.89 Bacterial regulatory helix-turn-helix protein, lysR family
TOBE_2               PF08402.5     75 sp|P58497|MODE_YERPE -            263   6.1e-05   22.9   0.1   2   2   5.8e-08   0.00017   21.4   0.0    12    73   195   258   166   259 0.85 TOBE domain
potato_inhibit       PF00280.13    63 sp|P58497|MODE_YERPE -            263     0.061   13.4   0.0   1   1   7.8e-05      0.23   11.6   0.0    21    48   232   259   215   261 0.90 Potato inhibitor I family
HTH_28               PF13518.1     52 sp|P58497|MODE_YERPE -            263      0.12   12.3   0.1   1   1    0.0001       0.3   11.1   0.1     2    51    21    70    20    72 0.88 Helix-turn-helix domain
Glycos_transf_4      PF00953.16   159 sp|Q8ZIF2|MRAY_YERPE -            360   9.2e-37  126.2  15.9   2   2   1.9e-40   9.2e-37  126.2  15.9     2   158    99   284    98   285 0.94 Glycosyl transferase family 4
MraY_sig1            PF10555.4     13 sp|Q8ZIF2|MRAY_YERPE -            360   0.00013   20.9   2.4   1   2   2.7e-08   0.00013   20.9   2.4     1    13    68    80    68    80 0.95 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
DUF3278              PF11683.3    129 sp|Q8ZIF2|MRAY_YERPE -            360         3    7.8   5.7   2   2   0.00011      0.55   10.2   0.5    15    71   108   165   102   195 0.79 Protein of unknown function (DUF3278)
MraZ                 PF02381.13    72 sp|Q8ZIF8|MRAZ_YERPE -            152   1.2e-45  153.0   0.1   1   2     1e-27   1.5e-23   82.3   0.0     1    71     1    75     1    76 0.99 MraZ protein
MraZ                 PF02381.13    72 sp|Q8ZIF8|MRAZ_YERPE -            152   1.2e-45  153.0   0.1   2   2   1.3e-23   1.9e-19   69.1   0.0     1    63    77   139    77   148 0.89 MraZ protein
ABC_membrane         PF00664.18   275 sp|Q8ZGA9|MSBA_YERPE -            582   2.3e-53  181.3  15.5   1   1   5.4e-56   3.1e-53  180.9  15.5     5   275    28   298    23   298 0.94 ABC transporter transmembrane region
ABC_tran             PF00005.22   137 sp|Q8ZGA9|MSBA_YERPE -            582   1.2e-35  122.7   0.2   1   1   1.1e-37   6.4e-35  120.4   0.0     1   137   359   509   359   509 0.88 ABC transporter
SMC_N                PF02463.14   220 sp|Q8ZGA9|MSBA_YERPE -            582   2.3e-10   40.1   3.8   1   1   4.2e-13   2.4e-10   40.0   1.7    25   211   370   551   358   557 0.84 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|Q8ZGA9|MSBA_YERPE -            582   4.9e-07   30.0   0.1   1   1   3.8e-07   0.00021   21.3   0.1     3   292   373   533   371   536 0.66 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZGA9|MSBA_YERPE -            582   1.2e-05   26.1   0.0   1   2   3.9e-07   0.00022   22.0   0.0     2    42   372   408   371   476 0.69 AAA domain
DUF258               PF03193.11   161 sp|Q8ZGA9|MSBA_YERPE -            582   6.1e-05   22.2   0.0   1   1   2.7e-07   0.00015   20.9   0.0    22    66   355   400   337   418 0.86 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|Q8ZGA9|MSBA_YERPE -            582   0.00049   19.5   0.1   1   1   3.5e-06     0.002   17.6   0.1    21    39   367   385   359   390 0.84 P-loop containing region of AAA domain
DEAD                 PF00270.24   169 sp|Q8ZGA9|MSBA_YERPE -            582   0.00052   19.5   0.1   1   1   4.5e-06    0.0026   17.2   0.0    10   150   364   529   359   542 0.77 DEAD/DEAH box helicase
Zeta_toxin           PF06414.7    201 sp|Q8ZGA9|MSBA_YERPE -            582   0.00052   19.1   0.1   1   2   6.6e-06    0.0037   16.3   0.0    16    57   369   411   358   459 0.81 Zeta toxin
AAA_18               PF13238.1    129 sp|Q8ZGA9|MSBA_YERPE -            582     0.002   18.4   0.2   1   1   1.4e-05    0.0079   16.5   0.2     1    23   372   426   372   559 0.73 AAA domain
APS_kinase           PF01583.15   157 sp|Q8ZGA9|MSBA_YERPE -            582    0.0024   17.5   0.1   1   1   9.5e-06    0.0054   16.3   0.1     2    43   369   409   368   433 0.87 Adenylylsulphate kinase
AAA_22               PF13401.1    131 sp|Q8ZGA9|MSBA_YERPE -            582    0.0035   17.4   0.9   1   1   6.8e-05     0.039   14.1   0.9     6   114   371   528   366   542 0.56 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZGA9|MSBA_YERPE -            582    0.0036   17.3   1.6   1   1   2.1e-05     0.012   15.5   1.5    24   180   369   529   358   536 0.60 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|Q8ZGA9|MSBA_YERPE -            582    0.0047   16.8   0.2   1   1     2e-05     0.011   15.6   0.2     2    21   372   391   371   551 0.85 50S ribosome-binding GTPase
ABC_membrane_2       PF06472.10   282 sp|Q8ZGA9|MSBA_YERPE -            582    0.0063   15.6   4.4   1   1   1.6e-05     0.009   15.1   3.8    61   276    59   270     8   276 0.73 ABC transporter transmembrane region 2
6PF2K                PF01591.13   223 sp|Q8ZGA9|MSBA_YERPE -            582     0.011   14.8   0.1   1   1   5.2e-05      0.03   13.4   0.0    15    86   371   451   361   465 0.84 6-phosphofructo-2-kinase
SRP54                PF00448.17   196 sp|Q8ZGA9|MSBA_YERPE -            582     0.027   13.9   0.0   1   1   0.00011     0.065   12.6   0.0     3    64   371   433   369   464 0.77 SRP54-type protein, GTPase domain
AAA_30               PF13604.1    196 sp|Q8ZGA9|MSBA_YERPE -            582     0.046   13.2   0.0   1   1   0.00023      0.13   11.8   0.0    19   112   370   517   363   535 0.71 AAA domain
AAA_19               PF13245.1     76 sp|Q8ZGA9|MSBA_YERPE -            582      0.09   12.5   0.2   1   1   0.00069      0.39   10.4   0.0    10    46   369   401   362   425 0.75 Part of AAA domain
AAA_10               PF12846.2    304 sp|Q8ZGA9|MSBA_YERPE -            582     0.093   12.1   1.0   1   2   0.00062      0.35   10.2   0.1     4    23   372   391   369   402 0.85 AAA-like domain
DUF87                PF01935.12   229 sp|Q8ZGA9|MSBA_YERPE -            582     0.095   12.5   2.5   1   1   0.00039      0.22   11.3   0.7    24    64   370   410   359   558 0.80 Domain of unknown function DUF87
AAA_25               PF13481.1    194 sp|Q8ZGA9|MSBA_YERPE -            582       0.1   12.0   1.6   1   1   0.00078      0.44    9.9   1.6    29   172   365   526   343   538 0.57 AAA domain
AAA_33               PF13671.1    143 sp|Q8ZGA9|MSBA_YERPE -            582      0.12   12.2   0.2   1   1   0.00068      0.39   10.6   0.2     2    35   372   409   371   509 0.71 AAA domain
MscL                 PF01741.13   128 sp|Q8ZJ83|MSCL_YERPE -            137   3.8e-52  175.7   0.5   1   1   8.8e-56   4.4e-52  175.5   0.5     1   128     3   134     3   134 0.96 Large-conductance mechanosensitive channel, MscL
UPF0239              PF06783.6     85 sp|Q8ZJ83|MSCL_YERPE -            137     0.034   14.0   0.4   2   2   6.8e-06     0.034   14.0   0.4    14    49    65   100    60   128 0.63 Uncharacterised protein family (UPF0239)
Spore_YhaL           PF14147.1     52 sp|Q8ZJ83|MSCL_YERPE -            137      0.11   11.9   0.0   1   1   4.4e-05      0.22   10.9   0.0     6    31    85   110    82   112 0.88 Sporulation protein YhaL
PMSR                 PF01625.16   156 sp|Q8ZB94|MSRA_YERPE -            212   1.5e-59  200.3   0.2   1   1   1.2e-63   1.8e-59  200.0   0.2     3   152    46   199    44   202 0.95 Peptide methionine sulfoxide reductase
SelR                 PF01641.13   124 sp|Q8ZEK7|MSRB_YERPE -            137   3.7e-52  175.2   0.0   1   1   2.9e-56   4.3e-52  175.0   0.0     3   123     9   128     7   129 0.96 SelR domain
Peptidase_M90        PF06167.7    253 sp|Q7CHU1|MTFA_YERPE -            270   1.2e-77  260.7   0.1   1   1   9.3e-82   1.4e-77  260.5   0.1    13   253     6   243     1   243 0.95 Glucose-regulated metallo-peptidase M90
Transgly             PF00912.17   178 sp|Q8ZB72|MTGA_YERPE -            241   8.2e-53  178.3   0.0   1   1   7.4e-57   1.1e-52  177.9   0.0    10   178    59   227    49   227 0.96 Transglycosylase
Mannitol_dh_C        PF08125.8    245 sp|Q8Z9X0|MTLD_YERPE -            387   4.7e-67  225.7   0.0   1   1   2.3e-70   6.9e-67  225.1   0.0     1   243   148   372   148   374 0.98 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|Q8Z9X0|MTLD_YERPE -            387   1.2e-25   90.2   0.1   1   1   8.2e-29   2.4e-25   89.2   0.1     1   151     1   123     1   123 0.96 Mannitol dehydrogenase Rossmann domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|Q8Z9X0|MTLD_YERPE -            387    0.0067   16.1   0.3   1   1     6e-06     0.018   14.7   0.3     5   118     6   135     2   146 0.73 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
3HCDH_N              PF02737.13   180 sp|Q8Z9X0|MTLD_YERPE -            387    0.0073   15.9   0.5   1   1   5.5e-06     0.016   14.8   0.3     5    86     6    87     2   104 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Methyltransf_25      PF13649.1    101 sp|Q8Z9X0|MTLD_YERPE -            387     0.077   13.3   0.0   1   2   0.00021      0.61   10.4   0.0     7    99     7   101     4   103 0.75 Methyltransferase domain
PNP_UDP_1            PF01048.15   234 sp|Q7CKD4|MTNN_YERPE -            233   4.1e-48  163.3   3.7   1   1   3.1e-52   4.6e-48  163.2   3.7     1   233     2   226     2   230 0.89 Phosphorylase superfamily
DAO                  PF01266.19   358 sp|P58526|MTOX_YERPE -            371   1.6e-59  201.6   0.1   1   1   1.8e-62   1.9e-59  201.3   0.1     1   356     4   350     4   351 0.90 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P58526|MTOX_YERPE -            371   1.1e-06   28.9   0.2   1   1   2.5e-08   2.6e-05   24.3   0.2     1   147     6   212     6   239 0.75 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P58526|MTOX_YERPE -            371   3.9e-05   23.6   0.0   1   2   1.3e-06    0.0014   18.5   0.0     1    91     4    98     4   117 0.63 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P58526|MTOX_YERPE -            371   8.9e-05   21.1   0.1   1   2   0.00042      0.44    8.9   0.1     1    32     3    34     3    39 0.93 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P58526|MTOX_YERPE -            371   8.9e-05   21.1   0.1   2   2   0.00016      0.17   10.3   0.0   108   163   147   200    70   204 0.87 HI0933-like protein
Amino_oxidase        PF01593.19   450 sp|P58526|MTOX_YERPE -            371   0.00062   18.9   0.1   1   1   8.3e-07   0.00088   18.4   0.1   185   276   124   211    96   219 0.78 Flavin containing amine oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P58526|MTOX_YERPE -            371   0.00069   18.5   0.5   1   2   2.7e-05     0.029   13.2   0.1     1    30     4    33     4    45 0.92 FAD binding domain
GIDA                 PF01134.17   392 sp|P58526|MTOX_YERPE -            371   0.00091   18.1   1.5   1   2   8.2e-06    0.0087   14.9   0.1     1    29     4    37     4    56 0.83 Glucose inhibited division protein A
FAD_oxidored         PF12831.2    428 sp|P58526|MTOX_YERPE -            371    0.0051   15.9   0.4   1   2   5.7e-05      0.06   12.4   0.2     1    29     4    32     4    36 0.96 FAD dependent oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P58526|MTOX_YERPE -            371    0.0054   16.7   0.1   1   1   1.6e-05     0.017   15.1   0.1     1    28     7    34     7    72 0.92 NAD(P)-binding Rossmann-like domain
Thi4                 PF01946.12   230 sp|P58526|MTOX_YERPE -            371    0.0072   15.4   0.0   1   1   1.3e-05     0.014   14.5   0.0    17    50     2    35     1    47 0.89 Thi4 family
ApbA                 PF02558.11   151 sp|P58526|MTOX_YERPE -            371     0.024   14.1   0.1   1   1   4.1e-05     0.044   13.2   0.1     2    31     6    35     5    79 0.82 Ketopantoate reductase PanE/ApbA
FAD_binding_3        PF01494.14   356 sp|P58526|MTOX_YERPE -            371     0.035   13.1   0.0   1   2   0.00033      0.35    9.8   0.1     2    39     3    40     2    53 0.84 FAD binding domain
3HCDH_N              PF02737.13   180 sp|P58526|MTOX_YERPE -            371     0.055   13.1   0.0   1   1    0.0001      0.11   12.1   0.0     3    37     6    40     4    71 0.81 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
MukB                 PF04310.7    227 sp|Q8ZG99|MUKB_YERPE -           1485  1.1e-138  459.9   1.6   1   1  5.8e-142  1.2e-138  459.8   0.0     1   227     1   227     1   227 1.00 MukB N-terminal
SbcCD_C              PF13558.1     90 sp|Q8ZG99|MUKB_YERPE -           1485     4e-14   52.2   1.4   1   1   1.1e-16   2.4e-13   49.8   0.0     1    89  1335  1424  1335  1425 0.88 Putative exonuclease SbcCD, C subunit
AAA_29               PF13555.1     62 sp|Q8ZG99|MUKB_YERPE -           1485     5e-13   48.3   0.2   1   1   4.5e-16   9.5e-13   47.4   0.2     2    61     8    66     7    67 0.90 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|Q8ZG99|MUKB_YERPE -           1485   4.9e-05   23.7   0.0   1   2   2.3e-08   4.9e-05   23.7   0.0     1    46     9    54     9   176 0.88 AAA domain
ABC_tran             PF00005.22   137 sp|Q8ZG99|MUKB_YERPE -           1485      0.26   11.5   0.1   1   3   0.00012      0.26   11.5   0.1    13    38    29    54    22    76 0.83 ABC transporter
DUF3713              PF12506.3    116 sp|Q8ZG99|MUKB_YERPE -           1485       1.9    8.5   5.9   2   2   0.00031      0.66   10.0   0.2    18    85   966  1034   953  1047 0.80 Protein of unknown function (DUF3713)
MukE                 PF04288.8    235 sp|Q8D049|MUKE_YERPE -            233  4.7e-124  411.7   1.4   1   1    1e-127  5.1e-124  411.6   1.4     1   219     1   213     1   233 0.93 MukE-like family
DUF4194              PF13835.1    166 sp|Q8D049|MUKE_YERPE -            233   0.00099   18.5   1.0   1   1   8.6e-07    0.0042   16.5   1.0    18   155    34   174    19   178 0.82 Domain of unknown function (DUF4194)
Tfb2                 PF03849.9    366 sp|Q8D049|MUKE_YERPE -            233     0.036   12.7   0.1   1   1   9.3e-06     0.046   12.3   0.1   223   283   128   188   107   216 0.82 Transcription factor Tfb2
KicB                 PF03882.9    440 sp|Q8ZGA1|MUKF_YERPE -            440    2e-250  830.7   8.9   1   1  4.6e-254  2.3e-250  830.6   8.9     1   440     1   440     1   440 1.00 KicB killing factor
HTH_27               PF13463.1     68 sp|Q8ZGA1|MUKF_YERPE -            440     0.039   14.2   0.1   1   3   7.8e-05      0.38   11.0   0.0    37    68    76   107    60   107 0.89 Winged helix DNA-binding domain
Phage-MuB_C          PF09077.6     78 sp|Q8ZGA1|MUKF_YERPE -            440       0.1   12.2   0.3   2   2   0.00012      0.58    9.8   0.2    13    75   185   245   179   248 0.72 Mu B transposition protein, C terminal
EPSP_synthase        PF00275.15   419 sp|Q8ZB56|MURA_YERPE -            420  2.6e-125  418.1   0.7   1   1  4.1e-129  3.1e-125  417.9   0.7     1   419     6   407     6   407 0.96 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
MurB_C               PF02873.11   105 sp|Q8ZAN4|MURB_YERPE -            345   3.8e-36  123.0   0.0   1   1   1.3e-39   6.6e-36  122.2   0.0     3   104   208   332   206   333 0.98 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
FAD_binding_4        PF01565.18   139 sp|Q8ZAN4|MURB_YERPE -            345   3.4e-26   91.3   0.1   1   1   1.2e-29   6.2e-26   90.5   0.1     2   139    21   153    20   153 0.93 FAD binding domain
RBFA                 PF02033.13   104 sp|Q8ZAN4|MURB_YERPE -            345      0.12   12.4   0.0   1   1   4.1e-05      0.21   11.6   0.0    64    93   307   336   289   345 0.82 Ribosome-binding factor A
Mur_ligase_M         PF08245.7    188 sp|Q8ZIE8|MURC_YERPE -            491   1.1e-27   97.3   0.0   1   1   3.2e-31   1.6e-27   96.7   0.0     1   188   124   304   124   304 0.87 Mur ligase middle domain
Mur_ligase           PF01225.20    83 sp|Q8ZIE8|MURC_YERPE -            491     1e-23   83.1   1.5   1   1   2.5e-27   1.2e-23   82.9   0.2     1    82    21   119    21   120 0.98 Mur ligase family, catalytic domain
Mur_ligase_C         PF02875.16    91 sp|Q8ZIE8|MURC_YERPE -            491   1.8e-21   75.9   0.0   1   2     3e-24   1.5e-20   73.0   0.0    10    89   333   418   324   420 0.86 Mur ligase family, glutamate ligase domain
Mur_ligase_M         PF08245.7    188 sp|Q8ZIF1|MURD_YERPE -            438   7.9e-40  136.9   0.1   1   1   3.2e-43   1.2e-39  136.3   0.1     1   188   110   280   110   280 0.88 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|Q8ZIF1|MURD_YERPE -            438   1.9e-08   34.1   0.0   1   1   2.1e-11     8e-08   32.2   0.0     2    63   301   356   300   400 0.88 Mur ligase family, glutamate ligase domain
NAD_binding_7        PF13241.1    103 sp|Q8ZIF1|MURD_YERPE -            438    0.0015   18.7   0.0   1   2   6.1e-06     0.023   14.9   0.0     2    72     1    77     1    93 0.81 Putative NAD(P)-binding
Mur_ligase_M         PF08245.7    188 sp|Q8ZIF4|MURE_YERPE -            490   3.1e-44  151.2   0.1   1   1   1.3e-47   4.7e-44  150.6   0.1     1   187   109   313   109   314 0.87 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|Q8ZIF4|MURE_YERPE -            490   5.1e-26   90.5   0.0   1   2   1.1e-28   4.1e-25   87.6   0.0     1    90   334   419   334   420 0.96 Mur ligase family, glutamate ligase domain
Mur_ligase           PF01225.20    83 sp|Q8ZIF4|MURE_YERPE -            490   2.1e-13   50.1   0.8   1   1   2.1e-16   7.7e-13   48.3   0.2     5    83    20    97    17    97 0.94 Mur ligase family, catalytic domain
DUF1611              PF07755.6    301 sp|Q8ZIF4|MURE_YERPE -            490     0.034   12.7   1.0   1   2   7.9e-05      0.29    9.7   0.0    81   154    70   143    44   151 0.92 Protein of unknown function (DUF1611)
Glyco_transf_28      PF03033.15   139 sp|Q8ZIE9|MURG_YERPE -            356   1.4e-38  131.8   2.7   1   3   5.4e-41   1.6e-37  128.3   0.4     2   138     9   145     8   146 0.98 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C      PF04101.11   167 sp|Q8ZIE9|MURG_YERPE -            356   9.2e-32  109.9   0.0   1   1     5e-35   1.5e-31  109.3   0.0     2   142   185   322   184   345 0.90 Glycosyltransferase family 28 C-terminal domain
Glyco_trans_1_3      PF13528.1    318 sp|Q8ZIE9|MURG_YERPE -            356   1.9e-08   33.8   0.1   1   1   3.3e-11   9.7e-08   31.5   0.1     7   315    11   319     6   322 0.70 Glycosyl transferase family 1
Glyco_trans_1_4      PF13692.1    135 sp|Q8ZIE9|MURG_YERPE -            356   1.3e-05   25.3   0.6   2   2   1.1e-07   0.00032   20.8   0.1    20   104   196   282   182   307 0.72 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|Q8ZIE9|MURG_YERPE -            356   2.7e-05   24.3   6.5   1   1   1.6e-07   0.00046   20.3   6.5     9   127    24   145    16   346 0.84 Glycosyl transferase 4-like domain
Asp_Glu_race         PF01177.17   216 sp|Q8ZAA2|MURI_YERPE -            287   3.7e-27   95.6   0.1   1   1   6.2e-31   4.6e-27   95.3   0.1     3   214    30   238    28   240 0.85 Asp/Glu/Hydantoin racemase
Thioesterase         PF00975.15   229 sp|Q8ZAA2|MURI_YERPE -            287      0.12   12.5   0.0   1   1   3.3e-05      0.24   11.5   0.0     6    70    31    91    27    92 0.93 Thioesterase domain
SIS                  PF01380.17   131 sp|Q8ZCP8|MURQ_YERPE -            295     2e-11   43.5   0.3   2   2   3.5e-14   1.3e-10   40.9   0.0    48   128   126   208   108   211 0.90 SIS domain
SIS_2                PF13580.1    138 sp|Q8ZCP8|MURQ_YERPE -            295   7.2e-09   35.4   0.0   1   1   1.2e-11   4.4e-08   32.9   0.0    20   136    47   164    44   166 0.87 SIS domain
ANTAR                PF03861.9     56 sp|Q8ZCP8|MURQ_YERPE -            295   0.00034   20.1   1.5   1   2   2.9e-05      0.11   12.0   0.1    13    40   233   260   227   260 0.92 ANTAR domain
MutH                 PF02976.10   104 sp|Q8ZHU5|MUTH_YERPE -            228   4.8e-38  129.2   0.0   1   1   8.7e-42   6.4e-38  128.8   0.0     1   104    58   157    58   157 0.99 DNA mismatch repair enzyme MutH
MvaI_BcnI            PF15515.1    220 sp|Q8ZHU5|MUTH_YERPE -            228      0.15   12.0   0.0   1   1   2.9e-05      0.22   11.5   0.0    18    51    46    81    34   107 0.81 MvaI/BcnI restriction endonuclease family
DNA_mis_repair       PF01119.14   119 sp|Q8ZIW4|MUTL_YERPE -            635   1.2e-39  134.4   0.0   1   1   6.6e-43     2e-39  133.7   0.0     1   118   212   329   212   330 0.98 DNA mismatch repair protein, C-terminal domain
MutL_C               PF08676.6    144 sp|Q8ZIW4|MUTL_YERPE -            635   3.8e-25   88.1   0.1   1   1     3e-28   8.8e-25   86.9   0.1     2   135   455   584   454   590 0.95 MutL C terminal dimerisation domain
HATPase_c_3          PF13589.1    137 sp|Q8ZIW4|MUTL_YERPE -            635   9.8e-14   51.1   0.0   1   1   5.9e-17   1.8e-13   50.3   0.0     4   102    24   122    21   139 0.82 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c            PF02518.21   111 sp|Q8ZIW4|MUTL_YERPE -            635   1.9e-11   43.6   0.0   1   1   1.6e-14   4.9e-11   42.3   0.0     3    67    20    82    18   122 0.86 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
T2SE_Nter            PF05157.10   109 sp|Q8ZIW4|MUTL_YERPE -            635    0.0037   17.2   0.4   2   3   5.9e-05      0.17   11.9   0.1    27   106   203   278   166   281 0.85 Type II secretion system (T2SS), protein E, N-terminal domain
MutS_V               PF00488.16   235 sp|Q8ZBQ3|MUTS_YERPE -            851  3.1e-104  347.5   0.0   1   1  1.8e-107  4.5e-104  346.9   0.0     1   234   567   798   567   799 0.99 MutS domain V
MutS_III             PF05192.13   204 sp|Q8ZBQ3|MUTS_YERPE -            851   9.4e-49  165.9   1.6   1   1   5.7e-52   1.4e-48  165.3   0.8     1   204   271   560   271   560 0.96 MutS domain III
MutS_I               PF01624.15   113 sp|Q8ZBQ3|MUTS_YERPE -            851   7.2e-42  141.9   0.0   1   1   8.7e-45   2.2e-41  140.4   0.0     1   112    11   122    11   123 0.99 MutS domain I
MutS_II              PF05188.12   137 sp|Q8ZBQ3|MUTS_YERPE -            851   1.9e-34  118.6   0.0   1   1   1.6e-37     4e-34  117.6   0.0     1   137   131   256   131   256 0.98 MutS domain II
MutS_IV              PF05190.13    92 sp|Q8ZBQ3|MUTS_YERPE -            851   3.1e-28   97.7   0.0   1   1   3.2e-31   7.9e-28   96.4   0.0     1    90   428   517   428   519 0.98 MutS family domain IV
CcmD                 PF04995.9     46 sp|Q8ZBQ3|MUTS_YERPE -            851     0.033   13.9   0.0   1   1   4.4e-05      0.11   12.2   0.0    10    38   770   798   769   801 0.95 Heme exporter protein D (CcmD)
NadA                 PF02445.11   296 sp|Q8ZGY8|NADA_YERPE -            353  4.6e-104  347.3   0.0   1   1  3.5e-108  5.3e-104  347.1   0.0     2   295    31   340    30   341 0.98 Quinolinate synthetase A protein
FAD_binding_2        PF00890.19   417 sp|Q8ZD80|NADB_YERPE -            533  1.6e-101  340.1   0.6   1   1    2e-104  2.1e-101  339.7   0.6     1   417    10   392    10   392 0.95 FAD binding domain
Succ_DH_flav_C       PF02910.15   129 sp|Q8ZD80|NADB_YERPE -            533   2.8e-20   72.4   0.1   1   1   4.8e-23     5e-20   71.6   0.1     2    89   441   522   440   527 0.94 Fumarate reductase flavoprotein C-term
Pyr_redox_2          PF07992.9    201 sp|Q8ZD80|NADB_YERPE -            533   3.9e-10   39.9   2.2   1   1   2.8e-10     3e-07   30.5   2.2     1   197    10   377    10   380 0.72 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZD80|NADB_YERPE -            533   2.1e-06   26.8   4.7   1   1   1.2e-08   1.3e-05   24.3   4.7     1   201    10   206    10   210 0.70 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|Q8ZD80|NADB_YERPE -            533    0.0003   19.3   0.1   1   3   0.00015      0.16   10.4   0.0     2    32    10    39     9    47 0.90 HI0933-like protein
Lycopene_cycl        PF05834.7    374 sp|Q8ZD80|NADB_YERPE -            533    0.0047   15.9   0.1   1   1   8.5e-06    0.0091   14.9   0.1     1    34    10    40    10    46 0.88 Lycopene cyclase protein
FAD_binding_3        PF01494.14   356 sp|Q8ZD80|NADB_YERPE -            533    0.0048   16.0   0.6   1   2   1.7e-05     0.018   14.1   0.1     3    32    10    38     9    46 0.90 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|Q8ZD80|NADB_YERPE -            533     0.005   16.8   0.0   1   1   1.6e-05     0.017   15.1   0.0     1    28    13    39    13    42 0.91 NAD(P)-binding Rossmann-like domain
Thi4                 PF01946.12   230 sp|Q8ZD80|NADB_YERPE -            533     0.023   13.7   4.0   1   2   0.00076      0.81    8.7   0.1    17    47     8    37     3    57 0.83 Thi4 family
NAD_binding_7        PF13241.1    103 sp|Q8ZD80|NADB_YERPE -            533      0.04   14.1   0.1   1   1   0.00015      0.16   12.2   0.0     9    61    10    60     7   100 0.65 Putative NAD(P)-binding
CTP_transf_2         PF01467.21   157 sp|Q8ZDG1|NADD_YERPE -            220   3.7e-39  134.2   0.0   1   1   2.9e-43   4.4e-39  134.0   0.0     1   157    13   193    13   193 0.96 Cytidylyltransferase
NAD_kinase           PF01513.16   285 sp|Q8ZH09|NADK_YERPE -            293   6.3e-71  238.4   0.0   1   1   4.9e-75   7.3e-71  238.2   0.0     2   284     9   272     8   273 0.97 ATP-NAD kinase
Glucosamine_iso      PF01182.15   199 sp|Q8ZDE1|NAGB_YERPE -            266   6.6e-24   84.7   0.0   1   1   6.5e-28   9.6e-24   84.2   0.0     4   198    15   216    12   217 0.84 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
ROK                  PF00480.15   179 sp|Q0WGE8|NAGK_YERPE -            256     1e-45  155.7   0.0   1   1   2.4e-49   1.2e-45  155.5   0.0     1   179     4   194     4   194 0.95 ROK family
Glucokinase          PF02685.11   316 sp|Q0WGE8|NAGK_YERPE -            256   1.2e-08   34.1   0.0   1   1   5.6e-11   2.8e-07   29.6   0.0     4   253     6   245     4   252 0.74 Glucokinase
COX14                PF14880.1     59 sp|Q0WGE8|NAGK_YERPE -            256      0.43   10.2   2.5   1   1   0.00019      0.94    9.1   2.5    17    33   124   140   123   142 0.95 Cytochrome oxidase c assembly
Glyco_hydro_3        PF00933.16   299 sp|Q8ZFS3|NAGZ_YERPE -            343   3.1e-69  233.2   0.0   1   1   5.2e-73   3.8e-69  232.9   0.0     7   291    11   316     5   320 0.94 Glycosyl hydrolase family 3 N terminal domain
MmlI                 PF09448.5    112 sp|Q8ZFS3|NAGZ_YERPE -            343      0.01   15.5   0.0   1   1   2.5e-06     0.019   14.7   0.0    50   100   116   167   103   178 0.77 Methylmuconolactone methyl-isomerase
NanE                 PF04131.9    192 sp|Q8ZCG8|NANE_YERPE -            233   1.1e-81  272.4   0.7   1   1   1.7e-85   1.3e-81  272.1   0.7     1   192    33   224    33   224 0.99 Putative N-acetylmannosamine-6-phosphate epimerase
IMPDH                PF00478.20   352 sp|Q8ZCG8|NANE_YERPE -            233      0.05   12.4   2.0   2   2   7.7e-06     0.057   12.3   0.1   205   251   170   216   153   224 0.86 IMP dehydrogenase / GMP reductase domain
ROK                  PF00480.15   179 sp|Q8ZCG9|NANK_YERPE -            290   4.9e-44  150.2   0.4   1   1     2e-47   7.5e-44  149.6   0.4     1   179     6   183     6   183 0.95 ROK family
BcrAD_BadFG          PF01869.15   271 sp|Q8ZCG9|NANK_YERPE -            290   7.4e-06   25.4   1.6   1   2   0.00013       0.5    9.6   0.0     3    28     7    32     5   134 0.85 BadF/BadG/BcrA/BcrD ATPase family
BcrAD_BadFG          PF01869.15   271 sp|Q8ZCG9|NANK_YERPE -            290   7.4e-06   25.4   1.6   2   2   2.6e-06    0.0097   15.2   0.6   181   271   196   286   193   286 0.81 BadF/BadG/BcrA/BcrD ATPase family
DEDD_Tnp_IS110       PF01548.12   144 sp|Q8ZCG9|NANK_YERPE -            290     0.011   15.4   0.0   1   2   0.00012      0.43   10.2   0.0     3    47     6    56     5   124 0.80 Transposase
Actin                PF00022.14   393 sp|Q8ZCG9|NANK_YERPE -            290     0.036   12.4   0.4   2   2   1.7e-05     0.061   11.7   0.1   296   367   218   288   194   290 0.86 Actin
Kelch_4              PF13418.1     49 sp|Q7CI10|NANM_YERPE -            392   4.4e-16   58.3   2.8   1   4     2e-11     5e-08   32.5   0.0     7    46    96   140    90   145 0.86 Galactose oxidase, central domain
Kelch_4              PF13418.1     49 sp|Q7CI10|NANM_YERPE -            392   4.4e-16   58.3   2.8   4   4   9.1e-05      0.22   11.2   0.1     2    31   351   379   350   389 0.80 Galactose oxidase, central domain
Kelch_6              PF13964.1     50 sp|Q7CI10|NANM_YERPE -            392   1.8e-13   49.9   8.6   2   7   6.9e-11   1.7e-07   31.1   0.0     5    44    94   139    90   146 0.88 Kelch motif
Kelch_6              PF13964.1     50 sp|Q7CI10|NANM_YERPE -            392   1.8e-13   49.9   8.6   4   7   0.00036      0.89    9.8   0.1    24    44   202   222   190   229 0.79 Kelch motif
Kelch_1              PF01344.20    47 sp|Q7CI10|NANM_YERPE -            392     2e-13   49.6   0.0   1   3   1.3e-11   3.1e-08   33.0   0.0     2    44    91   139    90   140 0.93 Kelch motif
Kelch_1              PF01344.20    47 sp|Q7CI10|NANM_YERPE -            392     2e-13   49.6   0.0   2   3    0.0001      0.26   10.8   0.0    23    42   201   220   162   224 0.79 Kelch motif
Kelch_2              PF07646.10    49 sp|Q7CI10|NANM_YERPE -            392   8.5e-12   44.3   0.0   1   3   5.2e-09   1.3e-05   24.7   0.0     6    43    95   136    90   139 0.92 Kelch motif
Kelch_2              PF07646.10    49 sp|Q7CI10|NANM_YERPE -            392   8.5e-12   44.3   0.0   2   3   0.00033      0.82    9.5   0.0    30    47   206   223   204   225 0.85 Kelch motif
Kelch_3              PF13415.1     49 sp|Q7CI10|NANM_YERPE -            392   3.7e-10   39.6   6.7   2   5   2.2e-08   5.5e-05   23.1   0.1     2    43   101   148   100   154 0.75 Galactose oxidase, central domain
Kelch_5              PF13854.1     42 sp|Q7CI10|NANM_YERPE -            392   1.5e-07   31.2   4.7   1   3   2.2e-09   5.4e-06   26.2   0.0     3    42    89   133    86   133 0.84 Kelch motif
MFS_1                PF07690.11   352 sp|Q8ZCH3|NANT_YERPE -            510   1.5e-41  142.2  56.2   1   2     7e-33   3.5e-29  101.6  28.7     2   287    39   308    38   311 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q8ZCH3|NANT_YERPE -            510   1.5e-41  142.2  56.2   2   2   4.6e-16   2.3e-12   46.3  24.0     2   161   298   468   297   485 0.87 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|Q8ZCH3|NANT_YERPE -            510   5.3e-30  104.3  38.4   1   3   8.1e-31     4e-27   94.8  12.8     2   213    34   229    33   264 0.92 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|Q8ZCH3|NANT_YERPE -            510   5.3e-30  104.3  38.4   3   3   3.8e-07    0.0019   16.8  11.7   249   437   288   472   283   477 0.81 Sugar (and other) transporter
Flavi_NS4A           PF01350.12   145 sp|Q8ZCH3|NANT_YERPE -            510      0.19   11.2   3.6   1   1   0.00011      0.55    9.7   3.6    49    91   262   304   259   311 0.88 Flavivirus non-structural protein NS4A
Molybdopterin        PF00384.17   432 sp|Q8ZCF3|NAPA_YERPE -            830   9.7e-89  298.0   0.0   1   1     4e-92   1.2e-88  297.7   0.0     1   432    96   568    96   568 0.96 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|Q8ZCF3|NAPA_YERPE -            830   9.5e-25   86.5   0.0   1   1   6.9e-28     2e-24   85.4   0.0     1   110   714   822   714   822 0.94 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|Q8ZCF3|NAPA_YERPE -            830   9.6e-18   63.7   0.2   1   1   6.3e-21   1.9e-17   62.8   0.2     2    54    40    92    39    93 0.96 Molybdopterin oxidoreductase Fe4S4 domain
TAT_signal           PF10518.4     26 sp|Q8ZCF3|NAPA_YERPE -            830   0.00013   21.6   1.6   1   1   1.3e-07   0.00039   20.1   1.6     1    22     2    23     2    26 0.93 TAT (twin-arginine translocation) pathway signal sequence
UCR_Fe-S_N           PF10399.4     41 sp|Q8ZCF3|NAPA_YERPE -            830     0.022   13.9   1.2   1   1   1.5e-05     0.045   12.9   1.2     9    34     3    27     1    30 0.80 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
NTPase_I-T           PF01931.13   168 sp|Q8ZIP1|NCPP_YERPE -            180   7.3e-68  227.5   0.0   1   1   5.6e-72   8.3e-68  227.3   0.0     1   166     7   168     7   170 0.99 Protein of unknown function DUF84
NDK                  PF00334.14   135 sp|Q8ZCT2|NDK_YERPE  -            142   6.3e-56  187.8   0.1   1   1   4.8e-60   7.1e-56  187.7   0.1     1   135     4   138     4   138 0.99 Nucleoside diphosphate kinase
NA37                 PF04245.8    325 sp|Q8ZGM5|NDPA_YERPE -            334  6.3e-100  334.6   0.0   1   1  4.8e-104  7.1e-100  334.5   0.0     2   325    10   329     9   329 0.97 37-kD nucleoid-associated bacterial protein
Endonuclease_5       PF04493.9    206 sp|Q8ZAQ8|NFI_YERPE  -            234   2.7e-65  219.5   0.0   1   1   2.2e-69   3.2e-65  219.3   0.0     3   204    12   208    10   210 0.97 Endonuclease V
Fe-S_biosyn          PF01521.15   112 sp|Q8ZJI0|NFUA_YERPE -            191     2e-12   47.0   0.0   1   1   4.5e-16   3.3e-12   46.3   0.0     3   106     2    98     1   101 0.92 Iron-sulphur cluster biosynthesis
NifU                 PF01106.12    68 sp|Q8ZJI0|NFUA_YERPE -            191   1.7e-10   40.5   0.0   1   1   3.7e-14   2.7e-10   39.8   0.0     1    65   111   177   111   180 0.91 NifU-like domain
Na_H_antiport_1      PF06965.7    378 sp|Q7CG77|NHAA_YERPE -            394  1.5e-158  527.5  29.1   1   1  1.1e-162  1.7e-158  527.3  29.1     1   378     5   380     5   380 0.99 Na+/H+ antiporter 1
NhaB                 PF06450.7    515 sp|Q74U12|NHAB_YERPE -            524    5e-282  936.0  30.8   1   1  1.2e-285  5.8e-282  935.8  30.8     1   513     1   511     1   513 0.99 Bacterial Na+/H+ antiporter B (NhaB)
DUF3753              PF12575.3     72 sp|Q74U12|NHAB_YERPE -            524      0.55   10.0   0.0   2   3   0.00011      0.55   10.0   0.0    25    65   275   315   274   320 0.79 Protein of unknown function (DUF3753)
SIR2                 PF02146.12   178 sp|Q8ZFR1|NPD_YERPE  -            243   2.5e-49  167.4   0.0   1   1   6.6e-53   3.2e-49  167.0   0.0     1   178    11   184    11   184 0.92 Sir2 family
TPP_enzyme_M         PF00205.17   137 sp|Q8ZFR1|NPD_YERPE  -            243      0.01   15.5   0.3   2   2     7e-06     0.034   13.8   0.0    59   121   152   214   119   227 0.80 Thiamine pyrophosphate enzyme, central domain
Glyco_transf_28      PF03033.15   139 sp|Q8ZFR1|NPD_YERPE  -            243     0.043   13.5   0.0   2   2   5.1e-05      0.25   11.0   0.0     3    21   173   191   172   222 0.78 Glycosyltransferase family 28 N-terminal domain
FMN_red              PF03358.10   152 sp|Q8ZF61|NQOR_YERPE -            199   1.8e-12   47.0   0.0   1   1     1e-15   2.5e-12   46.5   0.0    15   142    14   142     2   149 0.81 NADPH-dependent FMN reductase
Flavodoxin_1         PF00258.20   143 sp|Q8ZF61|NQOR_YERPE -            199   3.4e-11   43.3   0.1   1   1   2.1e-14   5.1e-11   42.7   0.1     1   135     6   128     6   136 0.87 Flavodoxin
Flavodoxin_5         PF12724.2    143 sp|Q8ZF61|NQOR_YERPE -            199   1.3e-05   25.2   0.0   2   2   7.3e-07    0.0018   18.2   0.0    38    91    64   122    45   134 0.75 Flavodoxin domain
Flavodoxin_2         PF02525.12   199 sp|Q8ZF61|NQOR_YERPE -            199   3.6e-05   23.3   0.0   1   1   2.1e-08   5.1e-05   22.8   0.0     2   138     3   118     2   140 0.76 Flavodoxin-like fold
Flavodoxin_4         PF12682.2    156 sp|Q8ZF61|NQOR_YERPE -            199   0.00095   18.5   0.0   1   1   1.6e-06     0.004   16.5   0.0     1   100     3    96     3   126 0.78 Flavodoxin
Flavodoxin_3         PF12641.2    160 sp|Q8ZF61|NQOR_YERPE -            199     0.042   13.2   0.0   2   2   0.00014      0.34   10.3   0.0    15    85    45   124    41   131 0.75 Flavodoxin domain
NQRA                 PF05896.6    257 sp|Q8ZBZ0|NQRA_YERPE -            447  6.4e-119  395.8   0.1   1   1  3.1e-122  7.8e-119  395.5   0.1     1   257     1   257     1   257 1.00 Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
NQRA_SLBB            PF11973.3     51 sp|Q8ZBZ0|NQRA_YERPE -            447   2.3e-22   79.0   0.3   1   1   1.9e-25   4.7e-22   78.0   0.3     1    49   262   310   262   312 0.96 NQRA C-terminal domain
RnfC_N               PF13375.1    101 sp|Q8ZBZ0|NQRA_YERPE -            447   2.2e-07   30.4   0.1   1   1   2.3e-10   5.7e-07   29.1   0.1    21    99    20    95    13    97 0.83 RnfC Barrel sandwich hybrid domain
Biotin_lipoyl_2      PF13533.1     50 sp|Q8ZBZ0|NQRA_YERPE -            447    0.0011   18.5   0.0   1   1   1.6e-06     0.004   16.7   0.0    17    32    44    59    15    59 0.80 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|Q8ZBZ0|NQRA_YERPE -            447    0.0085   15.7   0.0   1   1     1e-05     0.026   14.1   0.0    18    61    41    83    29    92 0.77 Biotin-requiring enzyme
NQR2_RnfD_RnfE       PF03116.10   314 sp|Q8ZBZ1|NQRB_YERPE -            413  6.8e-126  419.6  21.8   1   1  5.4e-130    8e-126  419.4  21.8     3   314    40   408    38   408 0.97 NQR2, RnfD, RnfE family
FMN_bind             PF04205.9     81 sp|Q8ZBZ2|NQRC_YERPE -            266   4.1e-18   65.3   0.0   1   1   5.4e-22   7.9e-18   64.3   0.0     1    78   151   246   151   248 0.96 FMN-binding domain
Rnf-Nqr              PF02508.9    190 sp|Q8ZBZ3|NQRD_YERPE -            209   4.7e-58  195.9  11.3   1   1   7.1e-62   5.3e-58  195.7  11.3     2   190     5   196     4   196 0.98 Rnf-Nqr subunit, membrane protein
Rnf-Nqr              PF02508.9    190 sp|Q9ZC45|NQRE_YERPE -            199     1e-68  230.6  14.2   1   1   2.4e-72   1.2e-68  230.4  14.2     2   189     3   198     2   199 0.99 Rnf-Nqr subunit, membrane protein
DUF2537              PF10801.3     84 sp|Q9ZC45|NQRE_YERPE -            199     0.025   14.6   2.7   2   2   2.1e-05       0.1   12.6   0.2     7    81    82   157    76   160 0.79 Protein of unknown function (DUF2537)
DUF3353              PF11833.3    194 sp|Q9ZC45|NQRE_YERPE -            199       0.6    9.5   4.8   2   2   6.2e-05      0.31   10.4   1.0   117   184   115   180    83   189 0.82 Protein of unknown function (DUF3353)
NAD_binding_1        PF00175.16   109 sp|Q8ZBZ5|NQRF_YERPE -            407   6.9e-22   78.0   0.0   1   1   4.4e-25   1.1e-21   77.4   0.0     1   107   277   386   277   388 0.90 Oxidoreductase NAD-binding domain
Fer2                 PF00111.22    78 sp|Q8ZBZ5|NQRF_YERPE -            407   1.2e-10   41.0   0.5   1   1   8.3e-14     2e-10   40.2   0.5     5    77    41   114    37   115 0.80 2Fe-2S iron-sulfur cluster binding domain
FAD_binding_6        PF00970.19    99 sp|Q8ZBZ5|NQRF_YERPE -            407   2.8e-10   40.1   0.0   2   2   1.9e-12   4.7e-09   36.2   0.0    42    97   202   266   174   268 0.90 Oxidoreductase FAD-binding domain
Fer2_4               PF13510.1     82 sp|Q8ZBZ5|NQRF_YERPE -            407     0.001   18.7   0.1   1   1   1.1e-06    0.0026   17.5   0.1     9    78    42   121    33   124 0.86 2Fe-2S iron-sulfur cluster binding domain
NAD_binding_6        PF08030.7    156 sp|Q8ZBZ5|NQRF_YERPE -            407    0.0018   18.1   0.0   1   2   1.4e-05     0.036   13.9   0.0     4    48   275   315   273   346 0.83 Ferric reductase NAD binding domain
HPS3_C               PF14763.1    353 sp|Q8ZBZ5|NQRF_YERPE -            407     0.064   12.2   0.0   1   1   4.5e-05      0.11   11.4   0.0    60   108    76   125    66   144 0.84 Hermansky-Pudlak syndrome 3, C-terminal
Flavodoxin_NdrI      PF07972.6    122 sp|Q8ZDC6|NRDI_YERPE -            134   4.6e-46  155.7   0.0   1   1   3.5e-50   5.2e-46  155.5   0.0     1   122     5   124     5   124 0.99 NrdI Flavodoxin like
ATP-cone             PF03477.11    90 sp|Q8ZC39|NRDR_YERPE -            149   3.9e-18   65.6   0.1   1   1   7.4e-22   5.5e-18   65.1   0.1     2    89    50   136    49   137 0.98 ATP cone domain
Lar_restr_allev      PF14354.1     61 sp|Q8ZC39|NRDR_YERPE -            149     0.085   13.1   0.1   1   1   1.7e-05      0.13   12.6   0.1     6    37     3    36     1    64 0.75 Restriction alleviation protein Lar
Ham1p_like           PF01725.11   189 sp|Q8ZHF4|NTPA_YERPE -            197   4.2e-65  218.6   0.0   1   1   3.2e-69   4.7e-65  218.5   0.0     1   188     4   193     4   194 0.97 Ham1 family
NUDIX                PF00293.23   135 sp|Q8ZAQ5|NUDC_YERPE -            260   6.1e-17   61.5   0.0   1   1     6e-20   9.9e-17   60.8   0.0     4   125   130   240   127   249 0.90 NUDIX domain
zf-NADH-PPase        PF09297.6     32 sp|Q8ZAQ5|NUDC_YERPE -            260   3.8e-09   35.8   8.8   1   1   4.4e-12   7.3e-09   34.9   8.8     1    32    93   124    93   124 0.98 NADH pyrophosphatase zinc ribbon domain
NUDIX-like           PF09296.6     98 sp|Q8ZAQ5|NUDC_YERPE -            260   5.1e-05   23.5   0.1   1   1     7e-08   0.00011   22.4   0.1     2    97    11    90    10    91 0.93 NADH pyrophosphatase-like rudimentary NUDIX domain
DZR                  PF12773.2     50 sp|Q8ZAQ5|NUDC_YERPE -            260     0.013   15.3   1.8   1   1   1.4e-05     0.023   14.5   1.8    11    46    94   130    89   131 0.83 Double zinc ribbon
DUF1451              PF07295.6    146 sp|Q8ZAQ5|NUDC_YERPE -            260       0.2   11.4   1.3   1   1   0.00022      0.36   10.6   1.3   115   141    98   124    96   128 0.94 Protein of unknown function (DUF1451)
zinc_ribbon_2        PF13240.1     23 sp|Q8ZAQ5|NUDC_YERPE -            260      0.32   10.5   3.1   1   2    0.0003      0.49    9.9   0.5    14    22    96   104    94   105 0.88 zinc-ribbon domain
Ogr_Delta            PF04606.7     47 sp|Q8ZAQ5|NUDC_YERPE -            260       0.4   10.3   4.8   1   1   0.00014      0.23   11.1   2.7     2    26    98   124    97   125 0.84 Ogr/Delta-like zinc finger
zf-ribbon_3          PF13248.1     26 sp|Q8ZAQ5|NUDC_YERPE -            260       3.7    6.8   5.7   1   1   0.00013      0.22   10.7   0.3    15    25    94   104    89   105 0.82 zinc-ribbon domain
NUDIX                PF00293.23   135 sp|Q74SF4|NUDK_YERPE -            198   9.5e-17   60.9   0.0   2   2   3.4e-20   2.5e-16   59.5   0.0     4   129    47   178    44   184 0.87 NUDIX domain
NUDIX                PF00293.23   135 sp|Q7CHW2|NUDL_YERPE -            199   4.3e-18   65.2   0.0   1   1     5e-22   7.3e-18   64.5   0.0     2   125    40   161    39   168 0.91 NUDIX domain
Oxidored_q4          PF00507.14   102 sp|Q0WDX2|NUOA_YERPE -            166   2.6e-26   91.4   2.7   1   1   2.3e-30   3.4e-26   91.0   2.7     4   102    28   125    14   125 0.91 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
Oxidored_q6          PF01058.17   131 sp|Q7CJ93|NUOB_YERPE -            225     3e-22   78.6   0.1   1   1   6.6e-26   4.9e-22   77.9   0.1     4   129    69   175    67   177 0.82 NADH ubiquinone oxidoreductase, 20 Kd subunit
PTPLA                PF04387.9    164 sp|Q7CJ93|NUOB_YERPE -            225     0.056   12.8   0.1   1   1   1.1e-05     0.084   12.2   0.1    67   154    38   124    33   130 0.93 Protein tyrosine phosphatase-like protein, PTPLA
Complex1_49kDa       PF00346.14   272 sp|Q7CJ92|NUOCD_YERPE -            598  2.1e-118  394.2   0.0   1   1  3.5e-122  2.6e-118  393.9   0.0     1   272   328   598   328   598 1.00 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_30kDa       PF00329.14   103 sp|Q7CJ92|NUOCD_YERPE -            598   7.2e-35  119.3   0.2   1   1   2.4e-38   1.8e-34  118.0   0.1     1   103    58   170    58   170 0.98 Respiratory-chain NADH dehydrogenase, 30 Kd subunit
NADH-G_4Fe-4S_3      PF10588.4     41 sp|Q8ZDL2|NUOG_YERPE -            914     5e-17   60.8   0.2   1   1   7.6e-20   1.1e-16   59.7   0.2     1    41    88   128    88   128 0.98 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Fer2_4               PF13510.1     82 sp|Q8ZDL2|NUOG_YERPE -            914   9.4e-11   41.3   0.7   1   1   2.6e-13   3.8e-10   39.4   0.1     5    78     3    78     1    82 0.87 2Fe-2S iron-sulfur cluster binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|Q8ZDL2|NUOG_YERPE -            914   3.5e-10   39.5   0.3   1   1   6.6e-13   9.8e-10   38.1   0.3     1    54   221   274   221   275 0.97 Molybdopterin oxidoreductase Fe4S4 domain
Fer2                 PF00111.22    78 sp|Q8ZDL2|NUOG_YERPE -            914     2e-09   37.0   1.3   1   1   3.9e-12   5.8e-09   35.5   0.2     1    78     4    72     4    72 0.81 2Fe-2S iron-sulfur cluster binding domain
Molydop_binding      PF01568.16   110 sp|Q8ZDL2|NUOG_YERPE -            914   3.3e-08   33.3   0.0   1   1   5.9e-11   8.8e-08   31.9   0.0    14    82   827   896   820   909 0.88 Molydopterin dinucleotide binding domain
Molybdopterin        PF00384.17   432 sp|Q8ZDL2|NUOG_YERPE -            914   3.5e-08   32.6   0.3   2   2     8e-10   1.2e-06   27.5   0.1   332   416   554   637   482   639 0.83 Molybdopterin oxidoreductase
TPP_enzyme_M         PF00205.17   137 sp|Q8ZDL2|NUOG_YERPE -            914     0.008   15.9   2.0   2   2   4.8e-05     0.072   12.8   0.5     1    41   483   523   483   615 0.70 Thiamine pyrophosphate enzyme, central domain
Fer4_6               PF12837.2     24 sp|Q8ZDL2|NUOG_YERPE -            914         7    6.6  10.8   1   2   0.00035      0.52   10.2   1.0     2    17   144   159   143   160 0.85 4Fe-4S binding domain
NADHdh               PF00146.16   311 sp|Q8ZDL3|NUOH_YERPE -            325  1.5e-122  408.5  13.6   1   1  1.2e-126  1.8e-122  408.3  13.6     3   310    15   320    13   321 0.99 NADH dehydrogenase
Fer4                 PF00037.22    24 sp|Q7CJ89|NUOI_YERPE -            180   1.6e-14   52.7  16.5   1   2   6.6e-08   6.1e-05   22.4   8.9     5    24    57    76    56    76 0.95 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|Q7CJ89|NUOI_YERPE -            180   1.6e-14   52.7  16.5   2   2   6.5e-12     6e-09   35.1   0.8     2    24    93   115    92   115 0.93 4Fe-4S binding domain
Fer4_7               PF12838.2     52 sp|Q7CJ89|NUOI_YERPE -            180   4.4e-12   46.1  10.7   1   1   8.1e-15   7.5e-12   45.4  10.7     1    52    59   113    59   113 0.92 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|Q7CJ89|NUOI_YERPE -            180   1.1e-10   41.6   3.7   1   2   3.7e-07   0.00035   20.7   0.7    27    55    47    75    26    75 0.81 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|Q7CJ89|NUOI_YERPE -            180   1.1e-10   41.6   3.7   2   2     2e-07   0.00019   21.6   0.1     1    18    98   115    77   137 0.67 4Fe-4S dicluster domain
Fer4_21              PF14697.1     59 sp|Q7CJ89|NUOI_YERPE -            180   1.9e-10   40.4   8.2   1   2   4.1e-08   3.8e-05   23.4   4.1    38    58    57    76    47    77 0.89 4Fe-4S dicluster domain
Fer4_21              PF14697.1     59 sp|Q7CJ89|NUOI_YERPE -            180   1.9e-10   40.4   8.2   2   2   9.8e-07   0.00091   19.0   0.1     2    26    93   117    92   135 0.81 4Fe-4S dicluster domain
Fer4_16              PF13484.1     67 sp|Q7CJ89|NUOI_YERPE -            180   2.8e-10   40.8   6.2   1   2   1.4e-06    0.0013   19.4   3.0     1    24    59    82    59    90 0.84 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|Q7CJ89|NUOI_YERPE -            180   2.8e-10   40.8   6.2   2   2   1.3e-07   0.00012   22.7   0.1     1    28    98   123    98   169 0.79 4Fe-4S double cluster binding domain
Fer4_2               PF12797.2     22 sp|Q7CJ89|NUOI_YERPE -            180   1.8e-09   36.9  12.4   1   2   1.5e-06    0.0014   18.3   4.4     7    22    57    72    52    72 0.89 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|Q7CJ89|NUOI_YERPE -            180   1.8e-09   36.9  12.4   2   2   4.5e-08   4.2e-05   23.2   1.0     3    22    92   111    90   111 0.91 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|Q7CJ89|NUOI_YERPE -            180   5.1e-08   33.2   3.1   1   2     1e-06   0.00095   19.5   0.2    43    65    51    73    14    77 0.78 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|Q7CJ89|NUOI_YERPE -            180   5.1e-08   33.2   3.1   2   2   5.1e-05     0.047   14.1   0.2    50    64    97   111    80   116 0.91 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|Q7CJ89|NUOI_YERPE -            180   8.2e-08   31.9  10.5   1   1   2.3e-10   2.1e-07   30.6  10.6     6    52    57   110    55   110 0.96 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|Q7CJ89|NUOI_YERPE -            180   8.6e-08   32.0  32.3   1   3     3e-05     0.027   14.4   3.4    40    56    54    73    21    74 0.71 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|Q7CJ89|NUOI_YERPE -            180   8.6e-08   32.0  32.3   2   3   1.4e-07   0.00013   21.9  13.9     3    55    58   111    56   113 0.73 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|Q7CJ89|NUOI_YERPE -            180   8.6e-08   32.0  32.3   3   3   8.3e-07   0.00077   19.4   0.6     2    22    96   118    95   163 0.73 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|Q7CJ89|NUOI_YERPE -            180   8.7e-07   28.5  17.5   1   2   0.00015      0.14   12.0   9.0     6    24    57    75    57    75 0.94 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|Q7CJ89|NUOI_YERPE -            180   8.7e-07   28.5  17.5   2   2   1.5e-07   0.00014   21.5   1.2     3    21    93   111    91   114 0.87 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|Q7CJ89|NUOI_YERPE -            180   1.8e-05   24.6  13.1   1   2   7.1e-05     0.066   13.5   5.2     2    16    58    72    57    79 0.92 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|Q7CJ89|NUOI_YERPE -            180   1.8e-05   24.6  13.1   2   2   1.3e-05     0.012   15.8   1.0     2    16    97   111    96   122 0.92 4Fe-4S binding domain
Fer4_17              PF13534.1     61 sp|Q7CJ89|NUOI_YERPE -            180   6.8e-05   23.1  11.1   2   2   1.2e-06    0.0011   19.2  11.4     1    58    59   111    59   115 0.78 4Fe-4S dicluster domain
Fer4_13              PF13370.1     58 sp|Q7CJ89|NUOI_YERPE -            180    0.0031   17.8  11.5   1   2     0.001      0.95    9.9   2.8     3    17    57    71    47    76 0.87 4Fe-4S single cluster domain
Fer4_13              PF13370.1     58 sp|Q7CJ89|NUOI_YERPE -            180    0.0031   17.8  11.5   2   2   0.00014      0.13   12.6   1.5     4    18    97   111    94   115 0.88 4Fe-4S single cluster domain
Fer4_3               PF12798.2     15 sp|Q7CJ89|NUOI_YERPE -            180    0.0039   17.6   4.1   2   2   4.2e-06    0.0039   17.6   4.1     1    14    99   112    99   113 0.92 4Fe-4S binding domain
Fer4_15              PF13459.1     65 sp|Q7CJ89|NUOI_YERPE -            180     0.012   16.2   0.3   3   3   1.2e-05     0.012   16.2   0.3     3    21    94   112    92   136 0.84 4Fe-4S single cluster domain
Oxidored_q2          PF00420.19    95 sp|Q7CJ87|NUOK_YERPE -            100   1.2e-24   85.7   6.5   1   1   2.6e-28   1.3e-24   85.6   6.5     3    94     8    99     6   100 0.97 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
NAD4L                PF06235.6     86 sp|Q7CJ87|NUOK_YERPE -            100    0.0019   17.9   0.9   1   1   4.9e-07    0.0024   17.5   0.9     7    76    12    85     6    94 0.78 NADH dehydrogenase subunit 4L (NAD4L)
ATP1G1_PLM_MAT8      PF02038.11    50 sp|Q7CJ87|NUOK_YERPE -            100    0.0067   15.4   0.6   1   2   1.4e-06    0.0067   15.4   0.6    18    35     7    24     5    27 0.86 ATP1G1/PLM/MAT8 family
Oxidored_q1          PF00361.15   270 sp|Q7CJ84|NUON_YERPE -            487   4.2e-66  222.9  24.7   2   3   8.4e-70   4.2e-66  222.9  24.7     1   269   122   403   122   404 0.96 NADH-Ubiquinone/plastoquinone (complex I), various chains
NADHdeh_related      PF10125.4    219 sp|Q7CJ84|NUON_YERPE -            487   0.00094   18.4   6.9   1   1     3e-07    0.0015   17.7   5.5    90   174   124   210   101   254 0.79 NADH dehydrogenase I, subunit N related protein
Syndecan             PF01034.15    64 sp|Q7CJ84|NUON_YERPE -            487      0.18   11.5   2.1   1   1     9e-05      0.45   10.2   0.1    13    34   451   472   439   473 0.86 Syndecan domain
NusB                 PF01029.13   134 sp|Q8ZC42|NUSB_YERPE -            138   8.7e-37  126.1   0.2   1   1   1.3e-40     1e-36  125.9   0.2     1   133     7   131     7   132 0.90 NusB family
Halogen_Hydrol       PF10112.4    199 sp|Q8ZC42|NUSB_YERPE -            138     0.073   12.4   0.0   1   1   1.3e-05     0.099   12.0   0.0    49   104    22    81     5    92 0.73 5-bromo-4-chloroindolyl phosphate hydrolysis protein
NusG                 PF02357.14    92 sp|Q8ZAP0|NUSG_YERPE -            181   2.9e-25   88.3   0.0   1   1   5.7e-29   4.2e-25   87.8   0.0     1    92     7   106     7   106 0.93 Transcription termination factor nusG
KOW                  PF00467.24    32 sp|Q8ZAP0|NUSG_YERPE -            181   3.2e-08   32.9   0.0   2   2   2.3e-11   1.7e-07   30.6   0.0     1    29   130   162   130   165 0.87 KOW motif
GTP1_OBG             PF01018.17   156 sp|Q7CKJ6|OBG_YERPE  -            390   1.1e-67  226.5   5.1   1   1   7.2e-71   1.5e-67  226.0   5.1     1   155     3   157     3   158 0.99 GTP1/OBG
MMR_HSR1             PF01926.18   116 sp|Q7CKJ6|OBG_YERPE  -            390   7.5e-22   77.4   0.0   1   1     6e-25   1.3e-21   76.7   0.0     1   116   161   284   161   284 0.82 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|Q7CKJ6|OBG_YERPE  -            390   4.4e-07   29.3   0.0   1   1   8.4e-10   1.8e-06   27.3   0.0     3    74   162   232   160   328 0.72 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|Q7CKJ6|OBG_YERPE  -            390     0.029   13.8   0.0   2   2   0.00026      0.54    9.6   0.0   124   186   277   332   257   334 0.78 Elongation factor Tu GTP binding domain
Gtr1_RagA            PF04670.7    232 sp|Q7CKJ6|OBG_YERPE  -            390      0.17   10.9   0.0   1   1   0.00012      0.25   10.4   0.0     6   139   166   303   162   321 0.72 Gtr1/RagA G protein conserved region
OmpA_membrane        PF01389.12   183 sp|Q8ZG77|OMPA_YERPE -            353   4.2e-68  228.4   1.8   1   1   1.8e-71   5.4e-68  228.1   1.8     1   182    23   200    23   201 0.98 OmpA-like transmembrane domain
OMP_b-brl            PF13505.1    176 sp|Q8ZG77|OMPA_YERPE -            353   8.1e-23   81.2   8.2   1   1   3.6e-26   1.1e-22   80.8   8.2     2   176     8   197     6   197 0.84 Outer membrane protein beta-barrel domain
OmpA                 PF00691.15    97 sp|Q8ZG77|OMPA_YERPE -            353   1.7e-18   66.8   0.0   1   1   1.4e-21     4e-18   65.6   0.0     1    91   229   320   229   326 0.95 OmpA family
Toluene_X            PF03349.11   427 sp|Q8ZG77|OMPA_YERPE -            353     0.011   14.0   0.6   2   2   9.5e-06     0.028   12.7   0.1   329   382   150   200   147   204 0.89 Outer membrane protein transport protein (OMPP1/FadL/TodX)
DUF3187              PF11383.3    320 sp|Q8ZG77|OMPA_YERPE -            353     0.013   14.6   0.4   1   1   1.4e-05     0.043   12.9   0.4   184   287    88   197    38   202 0.69 Protein of unknown function (DUF3187)
RNase_T              PF00929.19   164 sp|Q8ZIW9|ORN_YERPE  -            181   3.9e-32  111.7   0.0   1   1     3e-36   4.5e-32  111.6   0.0     1   163     9   170     9   171 0.97 Exonuclease
OTCace               PF00185.19   158 sp|Q8ZBG8|OTC_YERPE  -            335   8.6e-51  171.9   0.0   1   1   1.7e-54   1.3e-50  171.3   0.0     2   157   156   330   155   331 0.96 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
OTCace_N             PF02729.16   142 sp|Q8ZBG8|OTC_YERPE  -            335   1.2e-46  157.9   0.0   1   1   2.4e-50   1.8e-46  157.3   0.0     1   142     7   148     7   148 0.99 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
PagP                 PF07017.6    147 sp|Q8D091|PAGP_YERPE -            199   9.1e-75  248.8   6.2   1   1   1.5e-78   1.1e-74  248.6   6.2     2   147    54   199    53   199 0.99 Antimicrobial peptide resistance and lipid A acylation protein PagP
Pantoate_transf      PF02548.10   261 sp|Q8ZBK8|PANB_YERPE -            265    2e-107  358.1   0.1   1   1  4.7e-111  2.3e-107  357.9   0.1     2   261     3   261     2   261 0.98 Ketopantoate hydroxymethyltransferase
PEP_mutase           PF13714.1    238 sp|Q8ZBK8|PANB_YERPE -            265    0.0034   16.6   0.1   1   1   1.4e-06    0.0067   15.6   0.1     1   107     9   116     9   219 0.83 Phosphoenolpyruvate phosphomutase
AroM                 PF07302.6    221 sp|Q8ZBK8|PANB_YERPE -            265     0.066   12.5   0.1   1   1   2.9e-05      0.14   11.4   0.1   164   206   160   200   152   202 0.89 AroM protein
Pantoate_ligase      PF02569.10   280 sp|Q8ZBK7|PANC_YERPE -            284  9.9e-105  349.2   0.0   1   1  1.5e-108  1.1e-104  349.1   0.0     1   280     1   280     1   280 0.96 Pantoate-beta-alanine ligase
FAD_syn              PF06574.7    158 sp|Q8ZBK7|PANC_YERPE -            284     0.057   13.0   0.0   1   2   3.7e-05      0.27   10.8   0.0    18    81    33    91    23   109 0.86 FAD synthetase
Asp_decarbox         PF02261.11   116 sp|Q8ZBK6|PAND_YERPE -            126   6.4e-49  164.3   0.2   1   1   4.9e-53   7.3e-49  164.1   0.2     1   115     1   115     1   116 0.99 Aspartate decarboxylase
ApbA_C               PF08546.6    125 sp|Q8ZC51|PANE_YERPE -            303   9.8e-37  125.7   0.0   1   1   2.9e-40   1.4e-36  125.1   0.0     1   125   168   289   168   289 0.97 Ketopantoate reductase PanE/ApbA C terminal
ApbA                 PF02558.11   151 sp|Q8ZC51|PANE_YERPE -            303   3.8e-30  104.3   0.0   1   1   1.1e-33   5.4e-30  103.8   0.0     1   149     3   142     3   144 0.90 Ketopantoate reductase PanE/ApbA
NAD_Gly3P_dh_N       PF01210.18   157 sp|Q8ZC51|PANE_YERPE -            303     0.081   12.6   0.0   1   1   3.2e-05      0.16   11.7   0.0     1   107     2   102     2   138 0.78 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
RHH_2                PF03693.9     81 sp|Q9ZGW3|PARD_YERPE -             80   7.7e-21   74.0   0.1   1   1   5.4e-25     8e-21   74.0   0.1     1    59     1    59     1    79 0.92 Uncharacterised protein family (UPF0156)
PEPCK_ATP            PF01293.15   467 sp|Q8ZJG9|PCKA_YERPE -            539  7.4e-215  713.8   0.0   1   1  2.9e-218  8.6e-215  713.6   0.0     2   466    19   491    18   492 0.98 Phosphoenolpyruvate carboxykinase
AAA_33               PF13671.1    143 sp|Q8ZJG9|PCKA_YERPE -            539   0.00015   21.7   0.6   2   2    0.0001       0.3   10.9   0.1     1    17   242   258   242   266 0.88 AAA domain
PEPCK                PF00821.13   587 sp|Q8ZJG9|PCKA_YERPE -            539     0.099   10.7   0.1   2   2   9.6e-05      0.28    9.2   0.1   252   343   249   330   227   354 0.78 Phosphoenolpyruvate carboxykinase
Peptidase_C15        PF01470.12   203 sp|Q8ZD86|PCP_YERPE  -            215   9.8e-86  286.7   0.1   1   1   7.8e-90   1.2e-85  286.5   0.1     2   201     3   202     2   204 0.99 Pyroglutamyl peptidase
PdxA                 PF04166.7    299 sp|P58719|PDXA_YERPE -            331  5.8e-115  383.6   0.4   1   1  4.5e-119  6.7e-115  383.3   0.4     6   299    30   323    25   323 0.99 Pyridoxal phosphate biosynthetic protein PdxA
2-Hacid_dh_C         PF02826.14   178 sp|Q8D0U3|PDXB_YERPE -            375   5.6e-32  110.3   0.0   1   1   5.1e-35   1.3e-31  109.1   0.0    28   178   108   256    98   256 0.88 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DUF3410              PF11890.3     82 sp|Q8D0U3|PDXB_YERPE -            375   1.4e-26   91.9   0.0   1   1   9.4e-30   2.3e-26   91.2   0.0     1    82   288   369   288   369 0.99 Domain of unknown function (DUF3410)
2-Hacid_dh           PF00389.25   133 sp|Q8D0U3|PDXB_YERPE -            375   1.3e-15   57.0   0.0   1   1   7.4e-19   1.8e-15   56.5   0.0     2   123     4   278     3   285 0.94 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NAD_binding_2        PF03446.10   163 sp|Q8D0U3|PDXB_YERPE -            375     0.028   14.2   0.0   2   2   4.3e-05      0.11   12.3   0.0     2   109   117   222   116   231 0.73 NAD binding domain of 6-phosphogluconate dehydrogenase
ELFV_dehydrog        PF00208.16   244 sp|Q8D0U3|PDXB_YERPE -            375     0.076   12.5   0.0   1   1   4.9e-05      0.12   11.9   0.0    14    58    95   142    83   147 0.72 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
F420_oxidored        PF03807.12    96 sp|Q8D0U3|PDXB_YERPE -            375      0.13   12.6   0.0   1   1   0.00013      0.33   11.3   0.0     1    23   118   140   118   150 0.90 NADP oxidoreductase coenzyme F420-dependent
Pyridox_oxidase      PF01243.15    89 sp|Q8ZE19|PDXH_YERPE -            217   4.6e-23   81.0   0.0   1   1   1.4e-26   6.9e-23   80.4   0.0     2    86    39   121    38   124 0.95 Pyridoxamine 5'-phosphate oxidase
PNPOx_C              PF10590.4     42 sp|Q8ZE19|PDXH_YERPE -            217     1e-19   69.7   2.3   1   1   4.5e-23   2.2e-19   68.6   2.3     1    42   177   217   177   217 0.97 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Pyridox_oxase_2      PF12766.2    100 sp|Q8ZE19|PDXH_YERPE -            217   3.9e-05   23.8   0.0   1   1   1.3e-08   6.3e-05   23.2   0.0     5    96    35   117    31   121 0.86 Pyridoxamine 5'-phosphate oxidase
PdxJ                 PF03740.8    239 sp|Q8ZCP4|PDXJ_YERPE -            243   6.7e-99  329.8   3.4   1   1  1.6e-102   7.7e-99  329.6   3.4     2   238     5   239     4   240 0.98 Pyridoxal phosphate biosynthesis protein PdxJ
AP_endonuc_2         PF01261.19   213 sp|Q8ZCP4|PDXJ_YERPE -            243    0.0024   17.2   0.5   2   2   6.5e-06     0.032   13.5   0.3    75   128   139   189   133   231 0.87 Xylose isomerase-like TIM barrel
Phos_pyr_kin         PF08543.7    246 sp|Q7CIR8|PDXY_YERPE -            286   1.4e-16   60.4   0.0   1   1   2.3e-20   1.7e-16   60.1   0.0    72   242    90   264    42   268 0.87 Phosphomethylpyrimidine kinase
PfkB                 PF00294.19   301 sp|Q7CIR8|PDXY_YERPE -            286   3.4e-10   39.5   0.0   2   2   1.6e-13   1.2e-09   37.7   0.0   176   287   132   252    77   262 0.76 pfkB family carbohydrate kinase
Peptidase_M17        PF00883.16   311 sp|P58475|PEPB_YERPE -            432  1.3e-111  372.4   0.0   1   1  2.1e-115  1.6e-111  372.1   0.0     4   310   111   423   108   424 0.97 Cytosol aminopeptidase family, catalytic domain
DUF3663              PF12404.3     77 sp|P58475|PEPB_YERPE -            432   3.1e-35  119.7   0.9   1   1   4.2e-39   3.1e-35  119.7   0.9     1    77     6    82     6    82 0.99 Peptidase
Peptidase_M24        PF00557.19   207 sp|Q0WAP4|PEPQ_YERPE -            443   2.9e-37  128.2   0.0   1   1   2.5e-41   3.7e-37  127.9   0.0     1   207   168   430   168   430 0.82 Metallopeptidase family M24
Peptidase_M20        PF01546.23   189 sp|Q8ZFR0|PEPT_YERPE -            411   1.3e-15   57.4   0.0   1   1   4.5e-19   2.2e-15   56.6   0.0    33   186   138   400    74   402 0.74 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|Q8ZFR0|PEPT_YERPE -            411   1.8e-11   43.7   0.0   1   1     7e-15   3.4e-11   42.8   0.0     2   108   206   302   205   306 0.96 Peptidase dimerisation domain
Peptidase_M42        PF05343.9    292 sp|Q8ZFR0|PEPT_YERPE -            411   5.7e-08   31.8   0.1   1   2   1.9e-08   9.5e-05   21.3   0.0   134   194   140   201   111   236 0.90 M42 glutamyl aminopeptidase
Peptidase_M42        PF05343.9    292 sp|Q8ZFR0|PEPT_YERPE -            411   5.7e-08   31.8   0.1   2   2   0.00014      0.71    8.5   0.0   211   290   312   394   285   396 0.81 M42 glutamyl aminopeptidase
PFK                  PF00365.15   282 sp|Q8ZJL6|PFKA_YERPE -            327  5.5e-125  415.9   3.1   1   1  8.7e-129  6.5e-125  415.7   3.1     1   282     3   279     3   279 0.98 Phosphofructokinase
NAD_kinase           PF01513.16   285 sp|Q8ZJL6|PFKA_YERPE -            327    0.0099   14.6   0.1   1   1   2.1e-06     0.016   14.0   0.1    64   105    82   123    20   126 0.81 ATP-NAD kinase
PGK                  PF00162.14   384 sp|Q8ZHH3|PGK_YERPE  -            387  4.3e-142  473.2   0.1   1   1  3.3e-146  4.9e-142  473.0   0.1     2   384     6   373     5   373 0.99 Phosphoglycerate kinase
CDP-OH_P_transf      PF01066.16   101 sp|Q8ZF51|PGSA_YERPE -            182   1.6e-14   53.9  18.2   1   1   3.2e-18   4.7e-14   52.5  18.1     2    77     3    99     2   175 0.75 CDP-alcohol phosphatidyltransferase
ABC_tran             PF00005.22   137 sp|Q8ZGU5|PHNC_YERPE -            278   7.2e-34  117.0   0.0   1   1   1.4e-36   9.8e-34  116.5   0.0     1   137    41   202    41   202 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZGU5|PHNC_YERPE -            278   2.3e-12   47.4   0.1   1   2   7.7e-06    0.0054   16.7   0.0     1    55    53    89    53   106 0.74 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZGU5|PHNC_YERPE -            278   2.3e-12   47.4   0.1   2   2   1.4e-09   9.8e-07   29.0   0.0   181   302   139   236   114   237 0.78 AAA domain
AAA_15               PF13175.1    415 sp|Q8ZGU5|PHNC_YERPE -            278   1.7e-08   33.9   0.0   1   2   1.1e-05    0.0081   15.2   0.0     9    56    34    93    28   147 0.73 AAA ATPase domain
AAA_15               PF13175.1    415 sp|Q8ZGU5|PHNC_YERPE -            278   1.7e-08   33.9   0.0   2   2   3.5e-06    0.0025   16.9   0.0   369   413   189   234   176   236 0.86 AAA ATPase domain
DUF258               PF03193.11   161 sp|Q8ZGU5|PHNC_YERPE -            278   1.1e-06   27.9   0.0   1   1   2.7e-09   1.9e-06   27.1   0.0    20    73    35    89    19   105 0.85 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|Q8ZGU5|PHNC_YERPE -            278   3.1e-06   26.6   0.6   1   1   1.3e-07   9.5e-05   21.7   0.6    24   212    51   247    27   251 0.65 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|Q8ZGU5|PHNC_YERPE -            278   0.00032   20.1   0.0   1   1   1.1e-06   0.00077   18.9   0.0    16    40    45    68    39    72 0.84 P-loop containing region of AAA domain
MMR_HSR1             PF01926.18   116 sp|Q8ZGU5|PHNC_YERPE -            278    0.0014   18.5   0.6   1   1   8.3e-06    0.0059   16.5   0.6     2    39    54    96    53   252 0.70 50S ribosome-binding GTPase
T2SE                 PF00437.15   272 sp|Q8ZGU5|PHNC_YERPE -            278    0.0031   16.4   0.1   1   1   1.1e-05    0.0081   15.0   0.0    92   160    15    83     8   114 0.88 Type II/IV secretion system protein
AAA_22               PF13401.1    131 sp|Q8ZGU5|PHNC_YERPE -            278    0.0066   16.5   0.4   1   1     7e-05      0.05   13.7   0.4     5    64    52   118    47   236 0.56 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZGU5|PHNC_YERPE -            278     0.011   15.7   0.1   1   1   2.5e-05     0.018   15.0   0.1    10    45    38    72    34   222 0.86 AAA ATPase domain
AAA_10               PF12846.2    304 sp|Q8ZGU5|PHNC_YERPE -            278     0.011   15.1   0.8   1   2    0.0011      0.76    9.1   0.2     4    19    54    69    52    82 0.88 AAA-like domain
AAA_23               PF13476.1    202 sp|Q8ZGU5|PHNC_YERPE -            278     0.016   15.5   0.1   1   1   7.1e-05      0.05   13.9   0.0    11    36    42    68    32    73 0.81 AAA domain
AAA_25               PF13481.1    194 sp|Q8ZGU5|PHNC_YERPE -            278     0.025   14.0   0.1   1   2   0.00017      0.12   11.7   0.0    30    50    48    68    20    76 0.81 AAA domain
AAA_30               PF13604.1    196 sp|Q8ZGU5|PHNC_YERPE -            278     0.026   14.1   0.1   1   1   0.00011     0.081   12.4   0.0    19    57    52   100    35   112 0.71 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZGU5|PHNC_YERPE -            278     0.027   14.7   0.1   1   2   0.00048      0.34   11.2   0.0     1    20    54    73    54   115 0.79 AAA domain
SbcCD_C              PF13558.1     90 sp|Q8ZGU5|PHNC_YERPE -            278     0.032   14.1   0.0   1   1   0.00034      0.24   11.3   0.0    62    89   190   217   164   218 0.73 Putative exonuclease SbcCD, C subunit
DUF2326              PF10088.4    140 sp|Q8ZGU5|PHNC_YERPE -            278     0.033   13.8   0.0   1   1   0.00019      0.13   11.8   0.0    60   110   189   238   179   253 0.87 Uncharacterized protein conserved in bacteria (DUF2326)
Cellulase            PF00150.13   281 sp|Q8ZGU5|PHNC_YERPE -            278      0.04   13.1   0.0   1   1    0.0001     0.071   12.2   0.0    39    85   181   233   164   264 0.77 Cellulase (glycosyl hydrolase family 5)
AAA_17               PF13207.1    121 sp|Q8ZGU5|PHNC_YERPE -            278      0.04   14.7   0.0   1   1   0.00013      0.09   13.6   0.0     2    19    54    71    53   105 0.89 AAA domain
Miro                 PF08477.8    119 sp|Q8ZGU5|PHNC_YERPE -            278     0.066   13.7   0.0   1   1   0.00018      0.13   12.8   0.0     2    26    54    80    54   154 0.72 Miro-like protein
Guanylate_kin        PF00625.16   183 sp|Q7CKG8|PHNN_YERPE -            193   4.7e-09   35.9   0.0   1   1   6.1e-12   1.3e-08   34.5   0.0     2   180     2   177     1   179 0.86 Guanylate kinase
AAA_33               PF13671.1    143 sp|Q7CKG8|PHNN_YERPE -            193   2.7e-08   33.8   0.1   1   1   2.4e-11   5.2e-08   32.8   0.1     1   139     4   152     4   154 0.77 AAA domain
AAA_18               PF13238.1    129 sp|Q7CKG8|PHNN_YERPE -            193   2.6e-06   27.7   0.0   1   1   2.5e-09   5.4e-06   26.7   0.0     1   119     5   138     5   150 0.74 AAA domain
AAA_28               PF13521.1    163 sp|Q7CKG8|PHNN_YERPE -            193    0.0034   17.3   0.1   1   1   7.2e-06     0.015   15.2   0.1     2   144     5   146     4   166 0.76 AAA domain
DUF258               PF03193.11   161 sp|Q7CKG8|PHNN_YERPE -            193     0.048   12.8   0.0   1   1   3.8e-05      0.08   12.1   0.0    37    61     4    28     1    94 0.88 Protein of unknown function, DUF258
ABC_tran             PF00005.22   137 sp|Q7CKG8|PHNN_YERPE -            193     0.074   13.3   0.0   1   1   4.5e-05     0.095   13.0   0.0    13    36     4    27     2   183 0.84 ABC transporter
PCMT                 PF01135.14   210 sp|Q8ZBQ0|PIMT_YERPE -            208   2.7e-76  255.7   0.0   1   1   2.4e-79   3.3e-76  255.5   0.0     3   209     6   206     4   207 0.98 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_18      PF12847.2    112 sp|Q8ZBQ0|PIMT_YERPE -            208   7.7e-08   32.8   0.0   1   1   9.3e-11   1.3e-07   32.2   0.0     1   109    75   170    75   172 0.87 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|Q8ZBQ0|PIMT_YERPE -            208   2.7e-06   26.6   0.0   1   1   2.6e-09   3.6e-06   26.2   0.0    16    73    61   118    55   161 0.83 Ribosomal RNA adenine dimethylase
Methyltransf_26      PF13659.1    117 sp|Q8ZBQ0|PIMT_YERPE -            208   6.2e-06   26.2   0.0   1   1   9.5e-09   1.3e-05   25.2   0.0     2    76    77   147    76   173 0.88 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZBQ0|PIMT_YERPE -            208   8.8e-06   25.3   0.0   1   1   8.7e-09   1.2e-05   24.9   0.0     3    96    75   158    73   197 0.82 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q8ZBQ0|PIMT_YERPE -            208     0.002   17.8   0.0   1   1   2.1e-06    0.0029   17.3   0.0    15    91    69   154    56   194 0.69 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZBQ0|PIMT_YERPE -            208      0.01   15.1   0.0   1   1   1.1e-05     0.015   14.6   0.0    24   104    68   147    64   190 0.89 Methyltransferase small domain
CMAS                 PF02353.15   273 sp|Q8ZBQ0|PIMT_YERPE -            208     0.062   12.3   0.0   1   1   6.8e-05     0.092   11.8   0.0    51   131    64   145    55   151 0.79 Mycolic acid cyclopropane synthetase
GCD14                PF08704.5    247 sp|Q8ZBQ0|PIMT_YERPE -            208      0.12   11.8   0.0   1   1    0.0001      0.14   11.6   0.0    30    62    65    97    56   196 0.84 tRNA methyltransferase complex GCD14 subunit
DREV                 PF05219.7    265 sp|Q8ZBQ0|PIMT_YERPE -            208      0.14   11.0   0.0   1   1   0.00016      0.22   10.3   0.0    95   134    76   115    60   131 0.77 DREV methyltransferase
Methyltransf_32      PF13679.1    141 sp|Q8ZBQ0|PIMT_YERPE -            208      0.15   11.7   0.0   1   1    0.0002      0.26   10.9   0.0    18    67    69   117    58   132 0.72 Methyltransferase domain
Acyltransferase      PF01553.16   132 sp|Q8ZJ18|PLSB_YERPE -            825   9.8e-26   89.7   0.0   1   1   1.4e-29   2.1e-25   88.6   0.0     2   131   281   423   280   424 0.95 Acyltransferase
FA_synthesis         PF02504.10   323 sp|Q8ZFT8|PLSX_YERPE -            344  2.7e-115  384.6   0.1   1   1    2e-119    3e-115  384.5   0.1     1   323     4   331     4   331 0.99 Fatty acid synthesis protein
G3P_acyltransf       PF02660.10   178 sp|Q8ZI67|PLSY_YERPE -            216   5.3e-57  192.2   9.9   1   1   4.1e-61   6.1e-57  192.0   9.9     1   177    10   184    10   185 0.96 Glycerol-3-phosphate acyltransferase
NAPRTase             PF04095.11   245 sp|Q8ZG93|PNCB_YERPE -            401   6.4e-76  254.8   0.0   2   2   1.9e-79   2.9e-75  252.7   0.0     1   243   169   394   169   396 0.98 Nicotinate phosphoribosyltransferase (NAPRTase) family
RNase_PH             PF01138.16   132 sp|Q0WBF9|PNP_YERPE  -            705   6.1e-42  143.0   0.0   1   2   2.5e-21     4e-18   65.9   0.0     5   132    16   144    13   144 0.91 3' exoribonuclease family, domain 1
RNase_PH             PF01138.16   132 sp|Q0WBF9|PNP_YERPE  -            705   6.1e-42  143.0   0.0   2   2   5.4e-24   8.8e-21   74.5   0.0     2   132   324   456   323   456 0.92 3' exoribonuclease family, domain 1
PNPase               PF03726.9     83 sp|Q0WBF9|PNP_YERPE  -            705     2e-26   92.0   3.1   1   1   3.2e-29   5.2e-26   90.7   3.1     1    83   241   320   241   320 0.97 Polyribonucleotide nucleotidyltransferase, RNA binding domain
RNase_PH_C           PF03725.10    68 sp|Q0WBF9|PNP_YERPE  -            705   4.1e-26   90.6   3.1   1   2   8.6e-19   1.4e-15   56.9   0.1     1    67   147   210   147   211 0.97 3' exoribonuclease family, domain 2
RNase_PH_C           PF03725.10    68 sp|Q0WBF9|PNP_YERPE  -            705   4.1e-26   90.6   3.1   2   2   1.5e-11   2.5e-08   33.7   0.6     1    66   459   527   459   529 0.92 3' exoribonuclease family, domain 2
S1                   PF00575.18    74 sp|Q0WBF9|PNP_YERPE  -            705   1.8e-21   75.9   4.0   1   1   1.3e-24   2.1e-21   75.7   2.3     3    74   620   690   618   690 0.97 S1 RNA binding domain
KH_1                 PF00013.24    60 sp|Q0WBF9|PNP_YERPE  -            705   1.2e-12   47.2   4.8   1   1   1.3e-15   2.2e-12   46.4   3.5     2    60   556   612   555   612 0.93 KH domain
KH_3                 PF13014.1     43 sp|Q0WBF9|PNP_YERPE  -            705   8.4e-07   28.5   0.5   1   1   1.5e-09   2.5e-06   26.9   0.5     2    38   565   594   564   603 0.87 KH domain
KH_2                 PF07650.12    78 sp|Q0WBF9|PNP_YERPE  -            705    0.0041   16.6   1.5   1   2   7.5e-06     0.012   15.1   0.2    30    67   559   596   548   601 0.85 KH domain
S1_2                 PF13509.1     61 sp|Q0WBF9|PNP_YERPE  -            705     0.038   13.9   0.2   1   1   7.7e-05      0.13   12.2   0.0     1    36   621   656   621   686 0.88 S1 domain
PP_kinase_C          PF13090.1    353 sp|Q8ZCX2|PPK_YERPE  -            687  2.9e-148  493.1   1.6   1   1    1e-151  3.9e-148  492.7   1.6     3   352   331   679   329   680 0.99 Polyphosphate kinase C-terminal domain
PP_kinase            PF02503.12   207 sp|Q8ZCX2|PPK_YERPE  -            687   1.4e-51  174.9   1.0   1   1   6.3e-55   2.3e-51  174.2   1.0     1   204   117   321   117   324 0.95 Polyphosphate kinase middle domain
PP_kinase_N          PF13089.1    109 sp|Q8ZCX2|PPK_YERPE  -            687   7.3e-32  109.7   1.5   1   1     2e-35   7.3e-32  109.7   1.5     1   108     6   110     6   111 0.95 Polyphosphate kinase N-terminal domain
PLDc_2               PF13091.1    126 sp|Q8ZCX2|PPK_YERPE  -            687   2.3e-13   50.0   0.9   1   2   7.8e-11   2.9e-07   30.2   0.5    12   123   367   487   352   489 0.82 PLD-like domain
PLDc_2               PF13091.1    126 sp|Q8ZCX2|PPK_YERPE  -            687   2.3e-13   50.0   0.9   2   2   8.8e-07    0.0033   17.1   0.0    20   118   539   635   515   643 0.73 PLD-like domain
SSB                  PF00436.20   104 sp|Q8ZB82|PRIB_YERPE -            106   1.5e-14   53.7   0.0   1   1   2.1e-18   1.6e-14   53.6   0.0     2   103     5   101     4   102 0.88 Single-strand binding protein family
tRNA_anti-codon      PF01336.20    75 sp|Q8ZB82|PRIB_YERPE -            106     0.052   13.4   0.0   1   1   8.9e-06     0.066   13.0   0.0    29    75    52   102    27   102 0.89 OB-fold nucleic acid binding domain
PrmA                 PF06325.8    295 sp|Q8ZAX6|PRMA_YERPE -            293    2e-100  335.7   0.0   1   1  3.4e-103  2.3e-100  335.5   0.0     1   294     2   292     2   293 0.98 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_26      PF13659.1    117 sp|Q8ZAX6|PRMA_YERPE -            293   1.8e-11   44.0   0.6   1   1   6.7e-14   4.5e-11   42.8   0.1     2    80   160   233   159   262 0.86 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZAX6|PRMA_YERPE -            293   4.2e-11   43.4   0.1   1   1   1.1e-13   7.4e-11   42.6   0.1     2    76   159   229   158   257 0.79 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZAX6|PRMA_YERPE -            293   1.4e-10   40.9   0.0   1   1     3e-13     2e-10   40.4   0.0     4    80   159   230   156   266 0.83 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZAX6|PRMA_YERPE -            293   2.3e-10   40.1   0.0   1   1   5.3e-13   3.6e-10   39.4   0.0    17   105   142   230   127   239 0.78 Methyltransferase small domain
UPF0020              PF01170.13   180 sp|Q8ZAX6|PRMA_YERPE -            293   6.7e-07   29.0   0.1   1   1   1.8e-09   1.2e-06   28.2   0.1    28   113   158   230   143   231 0.90 Putative RNA methylase family UPF0020
Methyltransf_11      PF08241.7     95 sp|Q8ZAX6|PRMA_YERPE -            293   1.4e-06   28.6   0.0   1   1   3.8e-09   2.6e-06   27.8   0.0     2    67   164   230   163   239 0.90 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q8ZAX6|PRMA_YERPE -            293   1.8e-06   27.7   0.0   1   1   4.2e-09   2.8e-06   27.1   0.0    21    92   157   237   138   274 0.69 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q8ZAX6|PRMA_YERPE -            293   9.6e-06   25.9   0.0   1   1   2.9e-08   1.9e-05   25.0   0.0     2    73   164   230   163   253 0.74 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|Q8ZAX6|PRMA_YERPE -            293   5.9e-05   22.5   0.0   1   1   1.3e-07   8.8e-05   21.9   0.0    34   100   150   216   138   232 0.87 Conserved hypothetical protein 95
Methyltransf_32      PF13679.1    141 sp|Q8ZAX6|PRMA_YERPE -            293   0.00041   20.0   0.0   1   1   9.4e-07   0.00063   19.4   0.0    25    85   158   211   144   232 0.82 Methyltransferase domain
N6_N4_Mtase          PF01555.13   231 sp|Q8ZAX6|PRMA_YERPE -            293   0.00085   18.8   0.0   1   1   1.7e-06    0.0011   18.4   0.0   179   229   146   197    84   199 0.76 DNA methylase
PCMT                 PF01135.14   210 sp|Q8ZAX6|PRMA_YERPE -            293   0.00094   18.7   0.0   1   1   2.1e-06    0.0014   18.2   0.0    61   124   144   207   128   218 0.82 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_25      PF13649.1    101 sp|Q8ZAX6|PRMA_YERPE -            293     0.002   18.4   0.0   1   1   5.2e-06    0.0035   17.6   0.0     2    50   163   209   162   238 0.77 Methyltransferase domain
CMAS                 PF02353.15   273 sp|Q8ZAX6|PRMA_YERPE -            293    0.0022   17.1   0.0   1   1   4.9e-06    0.0033   16.5   0.0    55   120   152   216   147   230 0.87 Mycolic acid cyclopropane synthetase
Met_10               PF02475.11   200 sp|Q8ZAX6|PRMA_YERPE -            293    0.0042   16.7   0.0   1   1   9.2e-06    0.0062   16.1   0.0   102   177   159   231   153   244 0.84 Met-10+ like-protein
Methyltransf_9       PF08003.6    315 sp|Q8ZAX6|PRMA_YERPE -            293      0.01   14.5   0.0   1   1   2.1e-05     0.014   14.0   0.0   113   148   156   191   150   229 0.83 Protein of unknown function (DUF1698)
FmrO                 PF07091.6    251 sp|Q8ZAX6|PRMA_YERPE -            293      0.01   14.8   0.0   1   1   2.4e-05     0.016   14.2   0.0   107   175   160   227   150   232 0.88 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_15      PF09445.5    164 sp|Q8ZAX6|PRMA_YERPE -            293     0.017   14.6   0.0   1   1   3.6e-05     0.024   14.1   0.0     3    56   161   215   159   234 0.86 RNA cap guanine-N2 methyltransferase
Methyltransf_5       PF01795.14   310 sp|Q8ZAX6|PRMA_YERPE -            293      0.11   11.7   0.0   1   1   0.00022      0.15   11.3   0.0    16    70   155   209   141   229 0.78 MraW methylase family
SH3_4                PF06347.8     55 sp|Q8ZAX6|PRMA_YERPE -            293      0.12   11.9   0.1   1   1   0.00039      0.26   10.8   0.1    14    42   263   292   260   293 0.80 Bacterial SH3 domain
Ubie_methyltran      PF01209.13   233 sp|Q8ZAX6|PRMA_YERPE -            293      0.19   10.8   0.0   1   1   0.00047      0.32   10.0   0.0    45   103   156   213   151   230 0.84 ubiE/COQ5 methyltransferase family
MTS                  PF05175.9    170 sp|Q0WDE1|PRMB_YERPE -            310   2.4e-19   69.3   0.0   1   1   5.6e-22   3.8e-19   68.7   0.0    32   138   133   260   125   272 0.93 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|Q0WDE1|PRMB_YERPE -            310   4.5e-18   65.3   0.1   1   1   1.1e-20   7.3e-18   64.7   0.1     3   116   135   263   133   264 0.92 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q0WDE1|PRMB_YERPE -            310   2.9e-12   46.4   0.0   1   1   7.7e-15   5.2e-12   45.6   0.0     2   112   131   264   130   295 0.79 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q0WDE1|PRMB_YERPE -            310   1.5e-11   44.8   0.0   1   1   4.2e-14   2.9e-11   43.9   0.0     4   110   135   261   132   263 0.87 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q0WDE1|PRMB_YERPE -            310     2e-07   31.2   0.0   1   1   6.6e-10   4.4e-07   30.1   0.0     1    73   136   206   136   224 0.86 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q0WDE1|PRMB_YERPE -            310   2.4e-07   30.4   0.0   1   1   5.7e-10   3.8e-07   29.7   0.0     3    79   135   209   133   214 0.92 RNA cap guanine-N2 methyltransferase
PrmA                 PF06325.8    295 sp|Q0WDE1|PRMB_YERPE -            310   5.3e-07   29.0   0.0   1   1   1.1e-09   7.6e-07   28.5   0.0   160   232   131   207   120   208 0.84 Ribosomal protein L11 methyltransferase (PrmA)
UPF0020              PF01170.13   180 sp|Q0WDE1|PRMB_YERPE -            310   2.1e-06   27.4   0.0   1   1   5.2e-09   3.5e-06   26.7   0.0    31   117   135   211   130   218 0.86 Putative RNA methylase family UPF0020
Cons_hypoth95        PF03602.10   183 sp|Q0WDE1|PRMB_YERPE -            310   4.1e-05   23.0   0.0   1   1     1e-07   6.8e-05   22.3   0.0    39   128   131   214   117   226 0.82 Conserved hypothetical protein 95
Ubie_methyltran      PF01209.13   233 sp|Q0WDE1|PRMB_YERPE -            310   0.00027   20.1   0.0   1   1   6.4e-07   0.00043   19.4   0.0    46   100   131   185   123   197 0.87 ubiE/COQ5 methyltransferase family
Met_10               PF02475.11   200 sp|Q0WDE1|PRMB_YERPE -            310    0.0004   20.0   0.0   1   1   1.1e-06   0.00077   19.1   0.0   103   179   134   210   124   221 0.91 Met-10+ like-protein
Methyltransf_12      PF08242.7     99 sp|Q0WDE1|PRMB_YERPE -            310   0.00057   20.3   0.0   1   1   3.9e-06    0.0027   18.1   0.0     1    73   137   207   137   219 0.84 Methyltransferase domain
N6_Mtase             PF02384.11   311 sp|Q0WDE1|PRMB_YERPE -            310    0.0007   18.7   0.0   1   1   1.7e-06    0.0012   18.0   0.0    43   153   130   227   113   236 0.80 N-6 DNA Methylase
Methyltransf_11      PF08241.7     95 sp|Q0WDE1|PRMB_YERPE -            310    0.0051   17.2   0.0   1   1   1.5e-05    0.0099   16.3   0.0     1    64   137   204   137   222 0.80 Methyltransferase domain
CMAS                 PF02353.15   273 sp|Q0WDE1|PRMB_YERPE -            310     0.018   14.1   0.0   1   1     4e-05     0.027   13.5   0.0    62   133   132   206   121   225 0.90 Mycolic acid cyclopropane synthetase
Rsm22                PF09243.5    275 sp|Q0WDE1|PRMB_YERPE -            310     0.021   13.8   0.0   1   1     5e-05     0.034   13.1   0.0    33   107   131   204   121   214 0.85 Mitochondrial small ribosomal subunit Rsm22
Methyltransf_16      PF10294.4    174 sp|Q0WDE1|PRMB_YERPE -            310     0.021   14.2   0.0   1   1     5e-05     0.033   13.6   0.0    44   102   130   187   114   207 0.84 Putative methyltransferase
FmrO                 PF07091.6    251 sp|Q0WDE1|PRMB_YERPE -            310     0.028   13.3   0.1   1   1     7e-05     0.047   12.6   0.1   104   175   131   204   120   206 0.90 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_4       PF02390.12   197 sp|Q0WDE1|PRMB_YERPE -            310     0.029   13.4   0.0   1   1   8.5e-05     0.057   12.4   0.0    21    68   134   181   116   191 0.86 Putative methyltransferase
Methyltransf_3       PF01596.12   205 sp|Q0WDE1|PRMB_YERPE -            310     0.034   13.1   0.0   1   1   9.4e-05     0.063   12.3   0.0    47   108   134   194   127   207 0.87 O-methyltransferase
DUF938               PF06080.7    204 sp|Q0WDE1|PRMB_YERPE -            310      0.04   13.4   0.0   1   1   9.2e-05     0.062   12.8   0.0    12    99   115   206   112   215 0.83 Protein of unknown function (DUF938)
Methyltransf_2       PF00891.13   242 sp|Q0WDE1|PRMB_YERPE -            310      0.16   11.1   0.0   1   1   0.00035      0.23   10.5   0.0   103   163   134   204   122   207 0.90 O-methyltransferase
Methyltransf_31      PF13847.1    152 sp|Q7CIA2|PRMC_YERPE -            276   1.6e-21   76.5   0.0   1   1   3.6e-24   2.4e-21   75.9   0.0     5   126   111   250   109   274 0.83 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q7CIA2|PRMC_YERPE -            276     7e-18   64.5   0.0   1   1   1.8e-20   1.2e-17   63.8   0.0    33   138   111   235    94   262 0.86 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|Q7CIA2|PRMC_YERPE -            276     1e-16   60.9   0.4   1   1   5.3e-19   3.4e-16   59.3   0.4     3   114   112   236   110   261 0.89 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CIA2|PRMC_YERPE -            276   1.4e-15   57.8   0.0   1   1   4.6e-18     3e-15   56.7   0.0     4   110   112   236   110   238 0.70 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q7CIA2|PRMC_YERPE -            276   1.1e-06   28.9   0.0   1   1     1e-08   6.6e-06   26.5   0.0     1    49   114   166   114   188 0.90 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q7CIA2|PRMC_YERPE -            276   2.6e-06   27.2   0.0   1   2   7.9e-08   5.1e-05   23.0   0.0    14   113   100   235    94   250 0.58 Methyltransferase domain
UPF0020              PF01170.13   180 sp|Q7CIA2|PRMC_YERPE -            276   2.8e-06   27.0   0.0   1   1     1e-08   6.4e-06   25.8   0.0    37   116   118   185   109   192 0.88 Putative RNA methylase family UPF0020
Methyltransf_25      PF13649.1    101 sp|Q7CIA2|PRMC_YERPE -            276   1.6e-05   25.2   0.0   1   1   5.4e-08   3.5e-05   24.1   0.0     1    57   113   167   113   198 0.89 Methyltransferase domain
PrmA                 PF06325.8    295 sp|Q7CIA2|PRMC_YERPE -            276     2e-05   23.9   0.1   1   1   6.1e-08   3.9e-05   22.9   0.1   153   211   101   160    94   182 0.79 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_4       PF02390.12   197 sp|Q7CIA2|PRMC_YERPE -            276   4.1e-05   22.7   0.0   1   1     1e-07   6.6e-05   22.0   0.0    22    75   112   165    84   170 0.88 Putative methyltransferase
PCMT                 PF01135.14   210 sp|Q7CIA2|PRMC_YERPE -            276   4.6e-05   23.0   0.0   1   1   1.3e-07   8.6e-05   22.1   0.0    44   131    78   166    66   170 0.86 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_12      PF08242.7     99 sp|Q7CIA2|PRMC_YERPE -            276   4.7e-05   23.8   0.1   1   1   3.3e-07   0.00021   21.6   0.1     1    48   114   161   114   233 0.78 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q7CIA2|PRMC_YERPE -            276   5.3e-05   22.8   0.0   1   1   1.2e-07   7.7e-05   22.3   0.0     4    63   113   173   111   220 0.87 RNA cap guanine-N2 methyltransferase
Methyltransf_16      PF10294.4    174 sp|Q7CIA2|PRMC_YERPE -            276   0.00022   20.7   0.0   1   1   1.5e-06   0.00098   18.6   0.0    47   108   110   169    96   178 0.82 Putative methyltransferase
Ubie_methyltran      PF01209.13   233 sp|Q7CIA2|PRMC_YERPE -            276   0.00034   19.7   0.0   1   1   1.1e-06    0.0007   18.7   0.0    48   106   110   167    98   171 0.88 ubiE/COQ5 methyltransferase family
Cons_hypoth95        PF03602.10   183 sp|Q7CIA2|PRMC_YERPE -            276   0.00096   18.5   0.0   1   1   3.1e-06     0.002   17.5   0.0    43   126   110   187    92   196 0.80 Conserved hypothetical protein 95
TehB                 PF03848.9    192 sp|Q7CIA2|PRMC_YERPE -            276    0.0017   17.5   0.0   1   1   3.9e-06    0.0025   16.9   0.0    30    74   109   155    95   164 0.81 Tellurite resistance protein TehB
Methyltransf_32      PF13679.1    141 sp|Q7CIA2|PRMC_YERPE -            276    0.0017   18.0   0.0   1   1   3.9e-06    0.0025   17.4   0.0    24    90   108   167    96   210 0.85 Methyltransferase domain
FmrO                 PF07091.6    251 sp|Q7CIA2|PRMC_YERPE -            276    0.0024   16.8   0.1   1   1   5.6e-06    0.0036   16.3   0.1    98   156   101   160    86   174 0.87 Ribosomal RNA methyltransferase (FmrO)
tRNA_U5-meth_tr      PF05958.6    352 sp|Q7CIA2|PRMC_YERPE -            276     0.012   14.3   0.0   1   1   2.4e-05     0.016   13.9   0.0   199   249   112   164    95   170 0.86 tRNA (Uracil-5-)-methyltransferase
Met_10               PF02475.11   200 sp|Q7CIA2|PRMC_YERPE -            276     0.029   13.9   0.0   1   1   6.6e-05     0.043   13.4   0.0   104   148   112   156   101   165 0.88 Met-10+ like-protein
ADH_zinc_N           PF00107.21   130 sp|Q7CIA2|PRMC_YERPE -            276     0.061   12.8   0.3   1   1    0.0002      0.13   11.8   0.3     1    33   117   152   117   160 0.81 Zinc-binding dehydrogenase
Methyltransf_3       PF01596.12   205 sp|Q7CIA2|PRMC_YERPE -            276      0.15   11.0   0.0   1   1   0.00045      0.29   10.1   0.0    48    96   112   159    99   167 0.86 O-methyltransferase
Aldedh               PF00171.17   462 sp|Q8ZC09|PROA_YERPE -            419   2.1e-17   62.6   0.7   1   2   1.5e-17   1.1e-13   50.3   0.3    33   296     6   282     2   291 0.81 Aldehyde dehydrogenase family
Aldedh               PF00171.17   462 sp|Q8ZC09|PROA_YERPE -            419   2.1e-17   62.6   0.7   2   2   1.5e-05      0.11   10.8   0.0   380   437   325   381   320   410 0.80 Aldehyde dehydrogenase family
DUF1487              PF07368.6    215 sp|Q8ZC09|PROA_YERPE -            419      0.12   11.5   0.0   1   1   2.9e-05      0.21   10.7   0.0    11    60   232   282   227   309 0.87 Protein of unknown function (DUF1487)
AA_kinase            PF00696.23   242 sp|Q8ZC08|PROB_YERPE -            367   6.8e-43  146.9   2.3   1   1   1.8e-46   8.7e-43  146.6   2.3     2   241     6   234     5   235 0.93 Amino acid kinase family
PUA                  PF01472.15    74 sp|Q8ZC08|PROB_YERPE -            367   3.9e-21   74.5   0.1   1   1   2.5e-24   1.2e-20   72.9   0.0     1    74   276   350   276   350 0.98 PUA domain
ProQ                 PF04352.8    115 sp|Q8ZFJ9|PROQ_YERPE -            237   9.1e-44  147.7   0.3   1   1     2e-47   1.5e-43  147.1   0.3     2   114     6   118     5   120 0.98 ProQ/FINO family
PAG                  PF15347.1    428 sp|Q8ZFJ9|PROQ_YERPE -            237      0.26   10.3   3.1   1   1   4.4e-05      0.33   10.0   3.1   187   270   102   192    90   216 0.64 Phosphoprotein associated with glycosphingolipid-enriched
PapD_N               PF00345.15   122 sp|P69965|PSAB_YERPE -            273   2.3e-36  124.2   0.0   1   2   8.6e-40   6.4e-36  122.8   0.0     2   121    45   173    44   174 0.90 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P69965|PSAB_YERPE -            273   1.4e-23   82.5   0.2   2   2   1.8e-27   1.4e-23   82.5   0.2     1    67   193   268   193   269 0.97 Pili assembly chaperone PapD, C-terminal domain
Usher                PF00577.15   552 sp|P31527|PSAC_YERPE -            837  6.5e-193  642.4  11.3   1   1  1.6e-196    8e-193  642.1  11.3     1   552   190   746   190   746 0.97 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P31527|PSAC_YERPE -            837   2.9e-46  156.6   0.0   1   1   9.6e-50   4.7e-46  155.9   0.0     1   145    26   174    26   175 0.96 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P31527|PSAC_YERPE -            837   9.5e-25   86.0   0.1   1   1   4.2e-28   2.1e-24   84.9   0.1     1    67   756   823   756   824 0.94 PapC C-terminal domain
PS_Dcarbxylase       PF02666.10   202 sp|Q8ZIX1|PSD_YERPE  -            293   3.2e-62  209.4   0.0   1   1   5.1e-66   3.7e-62  209.2   0.0     1   201    63   284    63   285 0.98 Phosphatidylserine decarboxylase
Glyco_hydro_1        PF00232.13   455 sp|Q8ZIX1|PSD_YERPE  -            293     0.082   11.0   0.0   1   1   1.5e-05      0.11   10.6   0.0   130   171    28    70    25    88 0.88 Glycosyl hydrolase family 1
PsiE                 PF06146.7     69 sp|Q8ZAS3|PSIE_YERPE -            135   1.5e-17   63.5   5.2   2   2     1e-21   1.5e-17   63.5   5.2     4    69    60   122    57   122 0.96 Phosphate-starvation-inducible E
Kinase-PPPase        PF03618.9    255 sp|Q8ZDY4|PSRP_YERPE -            273   2.6e-81  272.8   0.0   1   1     2e-85   2.9e-81  272.6   0.0     1   255     5   263     5   263 0.97 Kinase/pyrophosphorylase
BPD_transp_1         PF00528.17   185 sp|P58655|PSTA_YERPE -            295   1.2e-29  103.1  15.4   2   2   2.5e-33   1.2e-29  103.1  15.4     1   175   101   289    97   293 0.95 Binding-protein-dependent transport system inner membrane component
UPF0233              PF06781.7     87 sp|P58655|PSTA_YERPE -            295      0.21   11.2   0.1   1   2   4.3e-05      0.21   11.2   0.1    16    55    14    52     3    65 0.69 Uncharacterised protein family (UPF0233)
DUF3333              PF11812.3    155 sp|P58655|PSTA_YERPE -            295       7.4    6.5   7.1   1   1   4.7e-05      0.23   11.4   0.4     6    44    21    59    16    63 0.88 Domain of unknown function (DUF3333)
ABC_tran             PF00005.22   137 sp|Q8ZCX5|PSTB1_YERPE -            270   3.3e-29  101.9   0.0   1   1   7.6e-32   4.9e-29  101.3   0.0     1   137    39   195    39   195 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZCX5|PSTB1_YERPE -            270     1e-14   55.2   0.0   1   2   9.7e-08   6.3e-05   23.0   0.0     1    46    51    94    51   100 0.84 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZCX5|PSTB1_YERPE -            270     1e-14   55.2   0.0   2   2   5.9e-10   3.8e-07   30.3   0.0   219   298   141   224   110   226 0.80 AAA domain
AAA_22               PF13401.1    131 sp|Q8ZCX5|PSTB1_YERPE -            270   9.5e-06   25.7   0.1   1   1   9.2e-08     6e-05   23.2   0.1     4   108    49   208    46   228 0.70 AAA domain
SMC_N                PF02463.14   220 sp|Q8ZCX5|PSTB1_YERPE -            270   2.3e-05   23.7   0.1   1   1   4.3e-07   0.00027   20.2   0.1    23   205    48   231    33   243 0.72 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|Q8ZCX5|PSTB1_YERPE -            270   6.9e-05   22.0   0.0   1   1   2.1e-07   0.00014   21.1   0.0     6    57    19    71    14   105 0.83 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|Q8ZCX5|PSTB1_YERPE -            270   0.00014   21.8   3.0   1   1   2.1e-06    0.0013   18.7   3.0    25   164    50   230    36   246 0.56 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q8ZCX5|PSTB1_YERPE -            270   0.00025   20.5   0.0   1   1   8.8e-07   0.00057   19.3   0.0    17    40    44    66    36    70 0.81 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|Q8ZCX5|PSTB1_YERPE -            270   0.00083   19.7   0.0   1   1   3.1e-06     0.002   18.4   0.0    14    39    41    69    27    72 0.87 AAA domain
AAA_10               PF12846.2    304 sp|Q8ZCX5|PSTB1_YERPE -            270    0.0074   15.7   0.3   1   2   0.00023      0.15   11.4   0.0     3    21    51    69    49    81 0.79 AAA-like domain
AAA_25               PF13481.1    194 sp|Q8ZCX5|PSTB1_YERPE -            270     0.011   15.0   0.1   1   2   8.7e-05     0.056   12.8   0.0    29    50    45    66    26    68 0.89 AAA domain
AAA_19               PF13245.1     76 sp|Q8ZCX5|PSTB1_YERPE -            270     0.013   15.2   0.0   1   2    0.0012      0.79    9.5   0.0    10    30    49    68    43    86 0.86 Part of AAA domain
Rad17                PF03215.10   519 sp|Q8ZCX5|PSTB1_YERPE -            270     0.016   13.9   0.0   1   1   3.5e-05     0.023   13.4   0.0    39    65    43    69    19    75 0.81 Rad17 cell cycle checkpoint protein
AAA_14               PF13173.1    128 sp|Q8ZCX5|PSTB1_YERPE -            270     0.022   14.6   0.0   1   1   0.00017      0.11   12.3   0.0     2    22    49    69    48    92 0.82 AAA domain
AAA_5                PF07728.9    139 sp|Q8ZCX5|PSTB1_YERPE -            270     0.028   14.1   0.2   1   2    0.0007      0.45   10.2   0.0     4    21    54    71    52    80 0.87 AAA domain (dynein-related subfamily)
AAA_33               PF13671.1    143 sp|Q8ZCX5|PSTB1_YERPE -            270     0.028   14.2   0.9   1   1    0.0002      0.13   12.1   0.9     1    18    51    68    51   244 0.84 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZCX5|PSTB1_YERPE -            270     0.035   14.9   0.5   1   1   0.00015     0.094   13.5   0.5     3    22    53    72    51   184 0.63 AAA domain
NACHT                PF05729.7    166 sp|Q8ZCX5|PSTB1_YERPE -            270     0.066   12.8   0.0   1   1   0.00025      0.16   11.6   0.0     1    19    50    68    50    81 0.90 NACHT domain
Arch_ATPase          PF01637.13   234 sp|Q8ZCX5|PSTB1_YERPE -            270     0.071   12.7   0.0   1   1   0.00053      0.34   10.5   0.0    21    40    50    69    42    81 0.86 Archaeal ATPase
AAA_28               PF13521.1    163 sp|Q8ZCX5|PSTB1_YERPE -            270     0.082   12.8   0.4   1   1   0.00043      0.28   11.1   0.4     3    21    53    71    51   263 0.92 AAA domain
AAA_15               PF13175.1    415 sp|Q8ZCX5|PSTB1_YERPE -            270      0.14   11.1   0.1   1   2   0.00092      0.59    9.1   0.0    22    54    49    85    30   113 0.84 AAA ATPase domain
ABC_tran             PF00005.22   137 sp|Q8Z9T1|PSTB2_YERPE -            258   1.3e-35  122.6   0.0   1   1     3e-38   1.8e-35  122.2   0.0     1   136    27   182    27   183 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|Q8Z9T1|PSTB2_YERPE -            258   3.8e-15   56.6   0.0   1   2   1.3e-07   7.9e-05   22.7   0.0     1    48    39    89    39   104 0.87 AAA domain
AAA_21               PF13304.1    303 sp|Q8Z9T1|PSTB2_YERPE -            258   3.8e-15   56.6   0.0   2   2   1.9e-10   1.1e-07   32.1   0.0   219   298   129   212    98   214 0.82 AAA domain
SMC_N                PF02463.14   220 sp|Q8Z9T1|PSTB2_YERPE -            258   4.6e-07   29.2   0.0   1   1   1.2e-08   7.1e-06   25.4   0.0    11   206    25   220    17   229 0.68 RecF/RecN/SMC N terminal domain
AAA_22               PF13401.1    131 sp|Q8Z9T1|PSTB2_YERPE -            258   1.7e-05   24.9   0.0   1   1   6.6e-08   3.9e-05   23.7   0.0     4   100    37   186    33   217 0.63 AAA domain
AAA_29               PF13555.1     62 sp|Q8Z9T1|PSTB2_YERPE -            258   4.1e-05   23.0   0.0   1   1   1.5e-07   8.6e-05   21.9   0.0    10    40    22    54    18    70 0.81 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|Q8Z9T1|PSTB2_YERPE -            258   5.7e-05   22.3   0.0   1   1   1.6e-07   9.4e-05   21.6   0.0    22    59    23    61     3    95 0.80 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|Q8Z9T1|PSTB2_YERPE -            258   8.8e-05   22.5   0.2   1   1   3.1e-06    0.0019   18.2   0.2    25    63    38    88    23   242 0.45 AAA ATPase domain
AAA_23               PF13476.1    202 sp|Q8Z9T1|PSTB2_YERPE -            258   0.00014   22.2   0.1   1   1   3.7e-07   0.00022   21.6   0.1     7    39    24    57    18   161 0.77 AAA domain
Rad17                PF03215.10   519 sp|Q8Z9T1|PSTB2_YERPE -            258   0.00052   18.8   0.0   1   1   1.2e-06   0.00073   18.3   0.0    34    75    26    67    23    91 0.82 Rad17 cell cycle checkpoint protein
AAA_10               PF12846.2    304 sp|Q8Z9T1|PSTB2_YERPE -            258     0.012   15.0   0.2   1   2    0.0001     0.062   12.7   0.0     1    22    37    58    37    69 0.80 AAA-like domain
AAA_14               PF13173.1    128 sp|Q8Z9T1|PSTB2_YERPE -            258     0.014   15.3   0.0   1   1   5.1e-05      0.03   14.2   0.0     2    28    37    64    36   101 0.79 AAA domain
MobB                 PF03205.9    140 sp|Q8Z9T1|PSTB2_YERPE -            258     0.015   15.0   0.4   2   3   0.00084       0.5   10.0   0.0     2    20    39    57    38    62 0.86 Molybdopterin guanine dinucleotide synthesis protein B
AAA_33               PF13671.1    143 sp|Q8Z9T1|PSTB2_YERPE -            258     0.017   14.9   0.0   1   1     6e-05     0.036   13.9   0.0     1    19    39    57    39   100 0.84 AAA domain
Arch_ATPase          PF01637.13   234 sp|Q8Z9T1|PSTB2_YERPE -            258     0.022   14.4   0.0   1   1   0.00014     0.082   12.5   0.0     8    42    27    59    24   103 0.85 Archaeal ATPase
G-alpha              PF00503.15   389 sp|Q8Z9T1|PSTB2_YERPE -            258     0.023   13.4   0.0   1   1   3.8e-05     0.023   13.4   0.0    62    84    41    63    28   228 0.78 G-protein alpha subunit
AAA_17               PF13207.1    121 sp|Q8Z9T1|PSTB2_YERPE -            258      0.04   14.7   0.1   1   1   0.00012     0.072   13.9   0.1     3    23    41    61    39   157 0.85 AAA domain
AAA_25               PF13481.1    194 sp|Q8Z9T1|PSTB2_YERPE -            258     0.062   12.7   0.0   1   1   0.00023      0.13   11.5   0.0    30    50    34    54    22    56 0.89 AAA domain
PRK                  PF00485.13   194 sp|Q8Z9T1|PSTB2_YERPE -            258     0.065   12.7   0.0   1   1   0.00021      0.12   11.8   0.0     4    27    42    65    39    93 0.77 Phosphoribulokinase / Uridine kinase family
AAA_30               PF13604.1    196 sp|Q8Z9T1|PSTB2_YERPE -            258     0.067   12.7   0.0   1   1   0.00042      0.25   10.9   0.0    17    43    36    62    26    80 0.87 AAA domain
AAA_28               PF13521.1    163 sp|Q8Z9T1|PSTB2_YERPE -            258     0.088   12.7   0.0   1   1    0.0003      0.18   11.7   0.0     3    21    41    59    39    86 0.85 AAA domain
Adeno_IVa2           PF02456.10   370 sp|Q8Z9T1|PSTB2_YERPE -            258      0.09   11.4   0.0   1   2   0.00066      0.39    9.3   0.0    80   114    31    64     5    69 0.76 Adenovirus IVa2 protein
AAA_5                PF07728.9    139 sp|Q8Z9T1|PSTB2_YERPE -            258      0.11   12.1   0.0   1   1   0.00042      0.25   11.0   0.0     4    23    42    61    40    70 0.87 AAA domain (dynein-related subfamily)
NACHT                PF05729.7    166 sp|Q8Z9T1|PSTB2_YERPE -            258      0.12   12.0   0.0   1   1   0.00058      0.34   10.5   0.0     2    20    39    57    38    66 0.87 NACHT domain
AAA_18               PF13238.1    129 sp|Q8Z9T1|PSTB2_YERPE -            258      0.15   12.3   0.0   1   1   0.00045      0.27   11.5   0.0     3    23    42    71    41   152 0.76 AAA domain
PTA_PTB              PF01515.14   319 sp|Q7CJ96|PTA_YERPE  -            717  1.3e-126  422.0   0.2   2   2  6.1e-130  2.3e-126  421.2   0.1     2   319   391   706   390   706 0.99 Phosphate acetyl/butaryl transferase
AAA_26               PF13500.1    199 sp|Q7CJ96|PTA_YERPE  -            717   2.3e-47  161.2   0.1   1   1   1.5e-50   5.7e-47  159.9   0.1     1   197     3   228     3   230 0.90 AAA domain
DRTGG                PF07085.7    105 sp|Q7CJ96|PTA_YERPE  -            717   6.5e-31  106.0   0.0   1   1     6e-34   2.2e-30  104.3   0.0     1   104   233   344   233   345 0.98 DRTGG domain
Oxidored_q6          PF01058.17   131 sp|Q7CJ96|PTA_YERPE  -            717      0.02   14.4   0.1   1   2   4.4e-05      0.16   11.5   0.1    21    80    68   140    54   141 0.81 NADH ubiquinone oxidoreductase, 20 Kd subunit
Pept_tRNA_hydro      PF01195.14   184 sp|Q8ZEY4|PTH_YERPE  -            196   1.7e-63  213.4   0.0   1   1   1.3e-67     2e-63  213.2   0.0     1   184     6   190     6   190 0.99 Peptidyl-tRNA hydrolase
GARS_A               PF01071.14   194 sp|Q8ZAR2|PUR2_YERPE -            428   3.9e-86  287.5   0.1   1   1   4.2e-89   5.2e-86  287.1   0.1     1   194   103   296   103   296 0.99 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
GARS_N               PF02844.10   100 sp|Q8ZAR2|PUR2_YERPE -            428     2e-36  124.4   0.1   1   1   3.4e-39   4.2e-36  123.4   0.1     1   100     1   102     1   102 0.96 Phosphoribosylglycinamide synthetase, N domain
GARS_C               PF02843.11    93 sp|Q8ZAR2|PUR2_YERPE -            428   1.1e-28   99.2   0.2   1   1   2.3e-31   2.8e-28   97.9   0.1     2    92   331   423   330   424 0.96 Phosphoribosylglycinamide synthetase, C domain
ATP-grasp_4          PF13535.1    184 sp|Q8ZAR2|PUR2_YERPE -            428   4.4e-16   59.1   0.0   1   1     8e-19   9.9e-16   58.0   0.0     5   180   105   292   103   294 0.83 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|Q8ZAR2|PUR2_YERPE -            428   5.1e-08   32.0   0.0   1   2   3.5e-10   4.4e-07   28.9   0.0    53   223    47   207    20   213 0.82 ATP-grasp in the biosynthetic pathway with Ter operon
ATP-grasp_3          PF02655.9    161 sp|Q8ZAR2|PUR2_YERPE -            428   2.1e-07   30.9   0.0   1   1   4.3e-10   5.3e-07   29.6   0.0     3   158   104   291   103   294 0.74 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|Q8ZAR2|PUR2_YERPE -            428     4e-07   29.5   0.0   1   1   5.6e-10   6.9e-07   28.7   0.0     8   158   111   265   104   293 0.68 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp            PF02222.17   172 sp|Q8ZAR2|PUR2_YERPE -            428   2.4e-05   23.7   0.1   1   1   4.5e-08   5.6e-05   22.5   0.0     2    83   113   200   112   221 0.85 ATP-grasp domain
tRNA_synt_1c_R1      PF04558.10   164 sp|Q8ZAR2|PUR2_YERPE -            428    0.0014   18.2   0.1   1   1   1.7e-06    0.0021   17.5   0.1    57   133    97   175    95   178 0.86 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
RimK                 PF08443.6    190 sp|Q8ZAR2|PUR2_YERPE -            428    0.0017   17.8   0.0   1   1   2.3e-06    0.0028   17.1   0.0     3   108   104   212   102   232 0.78 RimK-like ATP-grasp domain
ATP-grasp_2          PF08442.5    202 sp|Q8ZAR2|PUR2_YERPE -            428    0.0056   16.0   0.1   1   1   7.1e-06    0.0088   15.4   0.1     8    81   109   177   106   212 0.81 ATP-grasp domain
Dala_Dala_lig_C      PF07478.8    203 sp|Q8ZAR2|PUR2_YERPE -            428     0.021   14.2   0.0   1   1   3.1e-05     0.038   13.3   0.0     4    92   114   204   111   220 0.76 D-ala D-ala ligase C-terminus
GATase_5             PF13507.1    259 sp|Q8ZCQ2|PUR4_YERPE -           1296  1.4e-101  338.8   0.1   1   1  4.3e-105  2.1e-101  338.1   0.1     1   257  1040  1293  1040  1294 0.97 CobB/CobQ-like glutamine amidotransferase domain
AIRS_C               PF02769.17   153 sp|Q8ZCQ2|PUR4_YERPE -           1296   5.1e-46  156.4   1.4   1   2   5.8e-26   2.8e-22   79.3   0.0     2   148   431   585   430   590 0.93 AIR synthase related protein, C-terminal domain
AIRS_C               PF02769.17   153 sp|Q8ZCQ2|PUR4_YERPE -           1296   5.1e-46  156.4   1.4   2   2   9.8e-25   4.8e-21   75.3   0.9     3   147   824   964   822   969 0.87 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|Q8ZCQ2|PUR4_YERPE -           1296   3.1e-28   97.8   0.8   1   2   1.8e-30   8.7e-27   93.2   0.0     1    96   256   388   256   388 0.98 AIR synthase related protein, N-terminal domain
AIRS_C               PF02769.17   153 sp|Q8ZCX8|PUR5_YERPE -            347   3.8e-33  114.6   0.0   1   1     8e-37     6e-33  114.0   0.0     2   148   177   339   176   344 0.95 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|Q8ZCX8|PUR5_YERPE -            347   9.8e-19   67.4   0.2   1   1   2.7e-22     2e-18   66.4   0.2     5    96    47   142    36   142 0.91 AIR synthase related protein, N-terminal domain
SAICAR_synt          PF01259.13   249 sp|Q8ZCD2|PUR7_YERPE -            237   2.5e-70  236.4   0.0   1   1   1.9e-74   2.8e-70  236.2   0.0     2   246     4   233     3   236 0.98 SAICAR synthetase
AICARFT_IMPCHas      PF01808.13   315 sp|Q8ZAR3|PUR9_YERPE -            529  2.3e-141  470.4   2.3   1   1  3.8e-145  2.8e-141  470.1   2.3     1   315   137   461   137   461 0.99 AICARFT/IMPCHase bienzyme
MGS                  PF02142.17    95 sp|Q8ZAR3|PUR9_YERPE -            529   1.2e-29  102.0   0.0   1   1   3.7e-33   2.8e-29  100.9   0.0     1    95    19   132    19   132 0.99 MGS-like domain
Adenylsucc_synt      PF00709.16   421 sp|Q8ZIV7|PURA_YERPE -            432  3.7e-176  585.9   0.0   1   1  2.9e-180  4.2e-176  585.7   0.0     2   420     5   424     4   425 0.99 Adenylosuccinate synthetase
ATP-grasp            PF02222.17   172 sp|Q7CHW4|PURT_YERPE -            393   3.6e-54  182.6   0.0   1   1     5e-57   6.1e-54  181.9   0.0     2   171   123   294   122   295 0.98 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|Q7CHW4|PURT_YERPE -            393   1.7e-17   63.7   0.0   1   1   2.6e-20   3.2e-17   62.8   0.0    11   179   121   284   111   289 0.85 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|Q7CHW4|PURT_YERPE -            393   6.1e-07   28.9   0.0   1   1   1.1e-09   1.3e-06   27.8   0.0    16    87   127   196   113   225 0.83 Carbamoyl-phosphate synthase L chain, ATP binding domain
Dala_Dala_lig_C      PF07478.8    203 sp|Q7CHW4|PURT_YERPE -            393   2.2e-06   27.2   0.0   1   1   7.6e-09   9.3e-06   25.1   0.0    24   175   140   284   112   301 0.70 D-ala D-ala ligase C-terminus
ATP-grasp_3          PF02655.9    161 sp|Q7CHW4|PURT_YERPE -            393   4.7e-05   23.3   0.0   1   1   3.3e-07    0.0004   20.2   0.0     9   159   118   285   114   287 0.80 ATP-grasp domain
RimK                 PF08443.6    190 sp|Q7CHW4|PURT_YERPE -            393   0.00011   21.6   0.0   1   1   4.6e-07   0.00057   19.4   0.0    13   174   122   289   115   301 0.72 RimK-like ATP-grasp domain
CPSase_L_chain       PF00289.17   110 sp|Q7CHW4|PURT_YERPE -            393   0.00045   20.2   0.1   1   1   9.8e-07    0.0012   18.9   0.1     3    78    13    79    11   107 0.82 Carbamoyl-phosphate synthase L chain, N-terminal domain
2-Hacid_dh_C         PF02826.14   178 sp|Q7CHW4|PURT_YERPE -            393   0.00061   18.9   0.0   1   1   9.4e-07    0.0012   18.0   0.0    37    73    13    49     6    69 0.83 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
3HCDH_N              PF02737.13   180 sp|Q7CHW4|PURT_YERPE -            393    0.0064   16.1   0.1   1   1   9.4e-06     0.012   15.3   0.1     2    68    15    84    14   105 0.76 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ATPgrasp_Ter         PF15632.1    330 sp|Q7CHW4|PURT_YERPE -            393     0.011   14.4   0.0   1   1   1.7e-05     0.021   13.6   0.0    24   172    36   175    18   185 0.78 ATP-grasp in the biosynthetic pathway with Ter operon
ThiF                 PF00899.16   136 sp|Q7CHW4|PURT_YERPE -            393     0.079   12.7   0.1   1   1   0.00014      0.18   11.6   0.1     3    86    13    97    11   117 0.81 ThiF family
DUF1076              PF06416.7    113 sp|Q7CHW4|PURT_YERPE -            393      0.17   11.6   0.0   1   1   0.00024       0.3   10.7   0.0    57   100    51    96    46    99 0.87 Protein of unknown function (DUF1076)
OTCace_N             PF02729.16   142 sp|Q8ZB39|PYRB_YERPE -            311   6.2e-44  149.0   0.1   1   2   4.6e-47   2.3e-43  147.2   0.1     1   141     8   148     8   149 0.96 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace               PF00185.19   158 sp|Q8ZB39|PYRB_YERPE -            311   4.7e-35  120.7   0.0   1   1   1.4e-38   7.1e-35  120.2   0.0     1   157   154   303   154   304 0.92 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BRCT                 PF00533.21    78 sp|Q8ZB39|PYRB_YERPE -            311    0.0013   18.8   0.0   1   1     7e-07    0.0035   17.4   0.0     3    70    37   127    35   129 0.94 BRCA1 C Terminus (BRCT) domain
Amidohydro_1         PF01979.15   333 sp|Q8ZFU4|PYRC_YERPE -            348   1.4e-27   97.2   0.0   1   1   5.2e-31   1.9e-27   96.7   0.0     8   330    15   345    14   346 0.93 Amidohydrolase family
Amidohydro_2         PF04909.9    273 sp|Q8ZFU4|PYRC_YERPE -            348   1.8e-06   27.7   0.0   1   1   8.4e-10   3.1e-06   26.9   0.0     2   233    15   268    14   306 0.69 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|Q8ZFU4|PYRC_YERPE -            348    0.0054   16.7   0.2   1   1   2.1e-06    0.0079   16.2   0.2   127   289   140   307    84   318 0.74 Amidohydrolase
DHO_dh               PF01180.16   295 sp|Q8ZG91|PYRD_YERPE -            336   1.3e-91  306.6   0.1   1   1   3.3e-95   1.6e-91  306.3   0.1     4   290    47   335    45   336 0.96 Dihydroorotate dehydrogenase
OSCP                 PF00213.13   172 sp|Q8ZG91|PYRD_YERPE -            336     0.011   15.5   0.1   1   1     4e-06      0.02   14.7   0.1    84   148   193   257   191   258 0.92 ATP synthase delta (OSCP) subunit
DAHP_synth_2         PF01474.11   439 sp|Q8ZG91|PYRD_YERPE -            336      0.13   10.5   0.0   1   1   4.4e-05      0.22    9.8   0.0   284   314   213   243   198   255 0.89 Class-II DAHP synthetase family
Pribosyltran         PF00156.22   125 sp|Q8ZJP7|PYRE_YERPE -            215   4.1e-14   52.3   0.1   1   2   7.4e-18   1.1e-13   50.9   0.0     5   123    41   152    37   154 0.91 Phosphoribosyl transferase domain
OMPdecase            PF00215.19   226 sp|P58644|PYRF_YERPE -            245   8.5e-56  188.8   0.0   1   1   1.9e-59   9.6e-56  188.7   0.0     1   226    15   237    15   237 0.97 Orotidine 5'-phosphate decarboxylase / HUMPS family
TrbH                 PF07283.6    121 sp|P58644|PYRF_YERPE -            245     0.016   15.0   0.0   1   1   5.2e-06     0.026   14.3   0.0     9    64    25    80    18   108 0.79 Conjugal transfer protein TrbH
DUF1127              PF06568.6     40 sp|P58644|PYRF_YERPE -            245     0.028   13.8   0.0   1   1   9.8e-06     0.048   13.0   0.0    20    34   130   144   126   153 0.88 Domain of unknown function (DUF1127)
CTP_synth_N          PF06418.9    276 sp|Q8ZBN1|PYRG_YERPE -            545  1.1e-130  434.6   0.0   1   1  4.1e-134  1.5e-130  434.2   0.0     1   276     3   276     3   276 0.98 CTP synthase N-terminus
GATase               PF00117.23   192 sp|Q8ZBN1|PYRG_YERPE -            545   3.3e-52  176.7   0.0   1   1   1.5e-55   5.7e-52  175.9   0.0     2   192   301   535   300   535 0.89 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|Q8ZBN1|PYRG_YERPE -            545   3.2e-11   43.0   0.3   2   2   1.6e-13     6e-10   38.9   0.1    99   217   365   517   359   517 0.79 Peptidase C26
CbiA                 PF01656.18   195 sp|Q8ZBN1|PYRG_YERPE -            545   1.1e-05   24.8   0.0   1   1   5.5e-09     2e-05   24.0   0.0     8   109    14   148     7   174 0.73 CobQ/CobB/MinD/ParA nucleotide binding domain
AA_kinase            PF00696.23   242 sp|Q8ZH64|PYRH_YERPE -            241   8.7e-28   97.4   0.2   1   1   8.5e-32   1.3e-27   96.9   0.2     2   242    11   219    10   219 0.77 Amino acid kinase family
PyrI                 PF01948.13    96 sp|Q8ZB38|PYRI_YERPE -            154   7.7e-36  122.0   0.0   1   1   2.4e-39   1.2e-35  121.4   0.0     3    95     6    98     4    99 0.97 Aspartate carbamoyltransferase regulatory chain, allosteric domain
PyrI_C               PF02748.10    52 sp|Q8ZB38|PYRI_YERPE -            154   2.9e-20   71.4   1.1   1   1   1.1e-23   5.7e-20   70.5   1.1     1    50   101   150   101   152 0.93 Aspartate carbamoyltransferase regulatory chain, metal binding domain
zf-BED               PF02892.10    45 sp|Q8ZB38|PYRI_YERPE -            154     0.082   12.6   0.2   1   1   3.2e-05      0.16   11.7   0.2    12    28   131   147   112   149 0.76 BED zinc finger
Queuosine_synth      PF02547.10   341 sp|Q8ZC32|QUEA_YERPE -            356  4.1e-143  476.2   0.0   1   1  3.1e-147  4.6e-143  476.0   0.0     2   340     3   343     2   344 0.97 Queuosine biosynthesis protein
QueC                 PF06508.8    210 sp|Q8ZC72|QUEC_YERPE -            232   6.6e-81  270.5   0.0   1   1   4.7e-84   7.7e-81  270.3   0.0     1   209     3   214     3   215 0.96 Queuosine biosynthesis protein QueC
Arginosuc_synth      PF00764.14   388 sp|Q8ZC72|QUEC_YERPE -            232     7e-05   22.0   0.1   1   1     6e-08   9.9e-05   21.5   0.1     1    59     5    63     5    76 0.88 Arginosuccinate synthase
Asn_synthase         PF00733.16   255 sp|Q8ZC72|QUEC_YERPE -            232   7.9e-05   22.2   0.0   1   1   7.8e-08   0.00013   21.5   0.0    21    79     5    63     2    74 0.88 Asparagine synthase
ThiI                 PF02568.9    197 sp|Q8ZC72|QUEC_YERPE -            232   0.00023   20.7   0.0   1   1   1.7e-06    0.0028   17.1   0.0     5   117     3   125     1   191 0.67 Thiamine biosynthesis protein (ThiI)
ATP_bind_3           PF01171.15   182 sp|Q8ZC72|QUEC_YERPE -            232     0.011   15.2   0.0   1   1   1.2e-05      0.02   14.3   0.0     2    44     4    42     3    68 0.78 PP-loop family
PAPS_reduct          PF01507.14   174 sp|Q8ZC72|QUEC_YERPE -            232     0.024   14.4   0.0   1   1   2.5e-05     0.041   13.6   0.0     2    53     4    55     3    68 0.90 Phosphoadenosine phosphosulfate reductase family
CDKN3                PF05706.7    168 sp|Q8ZC72|QUEC_YERPE -            232     0.026   13.9   0.0   1   1   2.3e-05     0.039   13.4   0.0    42   138   121   223    78   231 0.77 Cyclin-dependent kinase inhibitor 3 (CDKN3)
ATP_bind_4           PF01902.12   219 sp|Q8ZC72|QUEC_YERPE -            232      0.05   12.9   0.0   1   1   4.3e-05      0.07   12.4   0.0     2    27     3    29     1    67 0.85 ATP-binding region
NAD_synthase         PF02540.12   242 sp|Q8ZC72|QUEC_YERPE -            232     0.074   11.9   0.0   1   2   0.00014      0.23   10.3   0.0    19    79     2    60     1    81 0.84 NAD synthase
QueF_N               PF14819.1    110 sp|Q8ZH75|QUEF_YERPE -            281   5.4e-46  155.2   0.0   1   2   4.4e-49   1.6e-45  153.6   0.0     1   110    21   131    21   131 0.98 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
QueF                 PF14489.1     81 sp|Q8ZH75|QUEF_YERPE -            281   3.9e-34  116.4   0.1   1   2   1.6e-06    0.0059   16.5   0.0    15    51    86   123    77   130 0.74 QueF-like protein
QueF                 PF14489.1     81 sp|Q8ZH75|QUEF_YERPE -            281   3.9e-34  116.4   0.1   2   2   8.2e-32     3e-28   97.5   0.0     1    77   195   269   195   272 0.98 QueF-like protein
C8                   PF08742.6     74 sp|Q8ZH75|QUEF_YERPE -            281    0.0059   16.8   0.0   1   1   4.6e-06     0.017   15.3   0.0    25    71   224   269   218   270 0.90 C8 domain
CM_2                 PF01817.16    81 sp|Q8ZH75|QUEF_YERPE -            281     0.056   13.5   0.0   1   1   3.5e-05      0.13   12.3   0.0    43    76   212   245   209   246 0.90 Chorismate mutase type II
DUF1730              PF08331.5     78 sp|Q7CKM4|QUEG_YERPE -            411   4.3e-25   87.1   0.1   1   2   4.3e-27   4.9e-24   83.8   0.0     1    68    62   130    62   135 0.96 Domain of unknown function (DUF1730)
Fer4_16              PF13484.1     67 sp|Q7CKM4|QUEG_YERPE -            411   3.3e-15   56.5   4.3   1   1   5.7e-18   6.5e-15   55.6   4.3     1    67   224   288   224   288 0.99 4Fe-4S double cluster binding domain
Fer4_10              PF13237.1     52 sp|Q7CKM4|QUEG_YERPE -            411   1.8e-08   34.0   5.7   1   1   2.9e-11   3.3e-08   33.1   5.7     3    52   219   286   217   294 0.98 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|Q7CKM4|QUEG_YERPE -            411     4e-06   26.9   0.4   1   2   2.7e-06    0.0031   17.7   0.0    36    55   221   240   147   240 0.80 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|Q7CKM4|QUEG_YERPE -            411    0.0004   20.7   7.8   1   2   0.00037      0.43   11.0   4.5    34    52   221   239   217   239 0.89 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|Q7CKM4|QUEG_YERPE -            411    0.0004   20.7   7.8   2   2   1.8e-06    0.0021   18.4   8.1     1    51   224   288   224   289 0.70 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|Q7CKM4|QUEG_YERPE -            411    0.0016   18.7   2.1   1   2   0.00048      0.54   10.7   1.9    45    65   218   238   125   240 0.76 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|Q7CKM4|QUEG_YERPE -            411    0.0082   15.9  12.3   1   2   6.8e-05     0.078   12.8   2.9     6    24   222   240   221   240 0.87 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|Q7CKM4|QUEG_YERPE -            411     0.084   12.5  12.1   1   2   3.1e-05     0.036   13.6   3.4     5    23   222   240   219   241 0.93 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|Q7CKM4|QUEG_YERPE -            411      0.17   11.8  11.1   1   3    0.0006      0.68    9.9   4.4     6    22   221   237   216   237 0.88 4Fe-4S binding domain
RapA_C               PF12137.3    362 sp|Q8ZII0|RAPA_YERPE -            968  2.6e-157  523.3   1.7   1   1  3.1e-160  4.5e-157  522.5   1.7     2   362   605   966   604   966 0.99 RNA polymerase recycling family C-terminal
SNF2_N               PF00176.18   299 sp|Q8ZII0|RAPA_YERPE -            968   2.1e-35  122.0   0.1   1   1   3.1e-38   4.5e-35  120.8   0.0    22   260   167   421   144   464 0.86 SNF2 family N-terminal domain
Helicase_C           PF00271.26    78 sp|Q8ZII0|RAPA_YERPE -            968   9.3e-11   41.4   0.0   1   1   1.4e-13   2.1e-10   40.3   0.0     4    78   525   601   522   601 0.96 Helicase conserved C-terminal domain
DEAD                 PF00270.24   169 sp|Q8ZII0|RAPA_YERPE -            968   5.3e-09   35.7   0.1   1   2     3e-11   4.4e-08   32.7   0.0    16   163   172   317   155   321 0.76 DEAD/DEAH box helicase
ResIII               PF04851.10   184 sp|Q8ZII0|RAPA_YERPE -            968   2.3e-08   34.0   0.0   1   1   5.9e-11   8.8e-08   32.1   0.0    23   183   168   317   129   318 0.70 Type III restriction enzyme, res subunit
AAA_22               PF13401.1    131 sp|Q8ZII0|RAPA_YERPE -            968     0.025   14.7   0.5   1   2   0.00026      0.38   10.8   0.0    68   125   229   316   167   321 0.56 AAA domain
IstB_IS21            PF01695.12   178 sp|Q8ZII0|RAPA_YERPE -            968     0.048   13.0   1.0   2   2   0.00051      0.76    9.1   0.0   100   142   263   307   256   321 0.84 IstB-like ATP binding protein
Flavi_DEAD           PF07652.9    148 sp|Q8ZII0|RAPA_YERPE -            968     0.066   12.9   0.0   1   1   0.00011      0.16   11.7   0.0    77   137   252   317   174   327 0.67 Flavivirus DEAD domain
TBPIP                PF07106.8    169 sp|Q8ZII0|RAPA_YERPE -            968       0.6    9.6   9.2   2   2    0.0002       0.3   10.6   6.0    69   158   853   947   844   952 0.80 Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
AAA_5                PF07728.9    139 sp|Q8ZJT1|RAVA_YERPE -            517   6.6e-24   84.2   0.0   1   1   7.5e-27   1.2e-23   83.3   0.0     1   139    41   171    41   171 0.90 AAA domain (dynein-related subfamily)
DUF3763              PF12592.3     57 sp|Q8ZJT1|RAVA_YERPE -            517   8.5e-20   70.1   4.5   2   2   5.1e-23   8.5e-20   70.1   4.5     2    57   443   498   442   498 0.96 Protein of unknown function (DUF3763)
AAA_3                PF07726.6    131 sp|Q8ZJT1|RAVA_YERPE -            517   0.00015   21.3   0.1   1   1   3.6e-07   0.00059   19.4   0.0     2   111    42   156    41   173 0.78 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|Q8ZJT1|RAVA_YERPE -            517   0.00042   19.5   0.1   1   2   1.9e-06    0.0032   16.6   0.0     8    46    25    63    20    78 0.84 Magnesium chelatase, subunit ChlI
Sigma54_activat      PF00158.21   168 sp|Q8ZJT1|RAVA_YERPE -            517   0.00071   19.0   0.0   1   1   6.2e-06      0.01   15.3   0.0    11   147    28   160    22   179 0.63 Sigma-54 interaction domain
AAA_16               PF13191.1    185 sp|Q8ZJT1|RAVA_YERPE -            517   0.00096   19.1   4.9   1   1   2.8e-06    0.0046   16.9   4.7     7    81    27    97    21   472 0.85 AAA ATPase domain
AAA                  PF00004.24   132 sp|Q8ZJT1|RAVA_YERPE -            517    0.0031   17.7   0.0   1   1   4.7e-06    0.0077   16.4   0.0     1   129    42   176    42   179 0.66 ATPase family associated with various cellular activities (AAA)
AAA_2                PF07724.9    171 sp|Q8ZJT1|RAVA_YERPE -            517     0.019   14.8   0.0   1   1     3e-05     0.049   13.5   0.0     6   101    42   129    39   149 0.84 AAA domain (Cdc48 subfamily)
RBFA                 PF02033.13   104 sp|Q8ZBC3|RBFA_YERPE -            136   1.1e-32  112.1   0.1   1   1   8.9e-37   1.3e-32  111.8   0.1     1   103     7   115     7   116 0.95 Ribosome-binding factor A
ABC_tran             PF00005.22   137 sp|Q7CG00|RBSA_YERPE -            507     6e-55  185.3   0.4   1   2   7.1e-34   5.8e-31  107.6   0.1     1   137    22   171    22   171 0.97 ABC transporter
ABC_tran             PF00005.22   137 sp|Q7CG00|RBSA_YERPE -            507     6e-55  185.3   0.4   2   2   3.8e-24   3.1e-21   76.0   0.0     2   136   272   425   271   426 0.90 ABC transporter
AAA_21               PF13304.1    303 sp|Q7CG00|RBSA_YERPE -            507     2e-11   44.4   0.1   1   3   3.1e-07   0.00026   21.0   0.0     2    24    35    57    34   103 0.77 AAA domain
AAA_21               PF13304.1    303 sp|Q7CG00|RBSA_YERPE -            507     2e-11   44.4   0.1   2   3     8e-05     0.066   13.1   0.1   250   297   156   200   148   202 0.87 AAA domain
AAA_15               PF13175.1    415 sp|Q7CG00|RBSA_YERPE -            507   3.4e-05   23.0   0.1   1   2   6.5e-05     0.053   12.5   0.0    22    49    29    61     8    91 0.72 AAA ATPase domain
AAA_10               PF12846.2    304 sp|Q7CG00|RBSA_YERPE -            507   7.8e-05   22.2   4.4   1   3    0.0003      0.24   10.7   0.1     6    34    37    65    35    66 0.88 AAA-like domain
AAA_10               PF12846.2    304 sp|Q7CG00|RBSA_YERPE -            507   7.8e-05   22.2   4.4   2   3   0.00042      0.35   10.2   0.5   199   268   121   207   102   224 0.75 AAA-like domain
DUF258               PF03193.11   161 sp|Q7CG00|RBSA_YERPE -            507    0.0001   21.4   0.6   1   2   3.3e-06    0.0027   16.8   0.1    32    66    29    63     7    68 0.85 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|Q7CG00|RBSA_YERPE -            507   0.00043   19.5   1.0   1   2   0.00043      0.35   10.0   0.1    20    42    28    50    13    63 0.81 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|Q7CG00|RBSA_YERPE -            507    0.0007   19.9   0.3   1   1   1.4e-06    0.0012   19.2   0.3     5    42    14    55    12    74 0.86 AAA domain
AAA_29               PF13555.1     62 sp|Q7CG00|RBSA_YERPE -            507    0.0018   17.7   0.6   1   1   6.5e-06    0.0053   16.2   0.1    22    40    31    49    17    57 0.82 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|Q7CG00|RBSA_YERPE -            507    0.0064   15.9   0.9   1   1   1.7e-05     0.014   14.8   0.1    32    64    31    71     4    87 0.83 AAA domain
UPF0079              PF02367.12   123 sp|Q7CG00|RBSA_YERPE -            507    0.0068   16.0   3.3   1   2    0.0009      0.74    9.4   0.3    14    41    31    58    17    64 0.84 Uncharacterised P-loop hydrolase UPF0079
AAA_22               PF13401.1    131 sp|Q7CG00|RBSA_YERPE -            507     0.069   13.2   5.0   1   1   0.00052      0.43   10.7   2.0     5   111    33   188    28   204 0.51 AAA domain
AAA_30               PF13604.1    196 sp|Q7CG00|RBSA_YERPE -            507      0.11   12.0   5.9   1   1   0.00023      0.19   11.2   1.8    16   117    31   185    20   202 0.59 AAA domain
RbsD_FucU            PF05025.8    142 sp|Q7CLE5|RBSD_YERPE -            139   2.2e-50  170.6   0.1   1   1   4.9e-54   2.4e-50  170.5   0.1     1   142     1   139     1   139 0.99 RbsD / FucU transport protein family
Uso1_p115_C          PF04871.8    136 sp|Q7CLE5|RBSD_YERPE -            139     0.028   14.3   0.2   1   1   7.4e-06     0.037   13.9   0.2    62   101    57    96    46   116 0.91 Uso1 / p115 like vesicle tethering protein, C terminal region
RdgC                 PF04381.7    301 sp|Q8ZC18|RDGC_YERPE -            303  5.7e-135  449.0   3.1   1   1  4.5e-139  6.6e-135  448.8   3.1     1   300     2   301     2   302 1.00 Putative exonuclease, RdgC
RecA                 PF00154.16   323 sp|P37858|RECA_YERPE -            356  1.1e-171  570.2   2.9   1   1  1.4e-174  1.2e-171  570.0   2.9     1   320     9   327     9   330 0.99 recA bacterial DNA recombination protein
KaiC                 PF06745.8    227 sp|P37858|RECA_YERPE -            356   7.9e-10   38.2   0.2   1   1   6.1e-12   5.4e-09   35.5   0.2     2   190    42   231    41   275 0.71 KaiC
Rad51                PF08423.6    256 sp|P37858|RECA_YERPE -            356   1.5e-09   37.1   0.2   1   1   3.4e-12   2.9e-09   36.1   0.2    15   222    36   228    22   269 0.76 Rad51
AAA_25               PF13481.1    194 sp|P37858|RECA_YERPE -            356   8.1e-08   31.8   0.7   1   1   4.3e-10   3.7e-07   29.7   0.7    13   178    39   182    29   191 0.74 AAA domain
Arch_ATPase          PF01637.13   234 sp|P37858|RECA_YERPE -            356    0.0012   18.5   0.0   1   1   3.9e-06    0.0034   17.1   0.0    21    57    61    97    58   113 0.86 Archaeal ATPase
AAA_35               PF14516.1    331 sp|P37858|RECA_YERPE -            356    0.0022   16.6   0.0   1   1     4e-06    0.0035   16.0   0.0    31    73    60   102    57   119 0.89 AAA-like domain
MobB                 PF03205.9    140 sp|P37858|RECA_YERPE -            356    0.0064   16.1   0.0   1   1   1.6e-05     0.014   15.1   0.0     2    39    62    98    61   102 0.88 Molybdopterin guanine dinucleotide synthesis protein B
AAA_22               PF13401.1    131 sp|P37858|RECA_YERPE -            356    0.0096   16.0   0.0   1   1   2.4e-05     0.021   14.9   0.0     5   101    61   153    59   192 0.80 AAA domain
AAA_24               PF13479.1    213 sp|P37858|RECA_YERPE -            356     0.011   15.2   0.1   1   1   2.8e-05     0.024   14.2   0.1     7    81    64   151    60   201 0.73 AAA domain
CbiA                 PF01656.18   195 sp|P37858|RECA_YERPE -            356     0.015   14.7   0.7   1   1   5.6e-05     0.049   13.0   0.7    10   106    71   150    65   204 0.67 CobQ/CobB/MinD/ParA nucleotide binding domain
PAXNEB               PF05625.6    363 sp|P37858|RECA_YERPE -            356     0.019   13.8   0.2   1   1   3.3e-05     0.029   13.2   0.2    29    53    40    65    32    73 0.89 PAXNEB protein
AAA_14               PF13173.1    128 sp|P37858|RECA_YERPE -            356     0.025   14.4   0.0   1   1   6.9e-05     0.061   13.2   0.0     3    42    61   101    59   148 0.78 AAA domain
AAA_16               PF13191.1    185 sp|P37858|RECA_YERPE -            356      0.03   14.2   0.0   1   1   6.4e-05     0.056   13.4   0.0    24    84    60   117    48   197 0.60 AAA ATPase domain
CobU                 PF02283.11   167 sp|P37858|RECA_YERPE -            356     0.031   13.6   0.0   1   1   6.8e-05      0.06   12.7   0.0     3   124    65   196    63   209 0.84 Cobinamide kinase / cobinamide phosphate guanyltransferase
TK                   PF00265.13   176 sp|P37858|RECA_YERPE -            356     0.044   13.3   0.0   1   1   8.3e-05     0.072   12.6   0.0     3    85    62   147    60   158 0.71 Thymidine kinase
AAA                  PF00004.24   132 sp|P37858|RECA_YERPE -            356      0.05   13.8   0.1   1   1   0.00011       0.1   12.8   0.1     3    98    65   184    63   200 0.59 ATPase family associated with various cellular activities (AAA)
cobW                 PF02492.14   178 sp|P37858|RECA_YERPE -            356     0.092   12.1   0.1   1   1   0.00024      0.21   11.0   0.1     4    99    64   153    61   172 0.77 CobW/HypB/UreG, nucleotide-binding domain
SMC_N                PF02463.14   220 sp|Q8Z9U9|RECF_YERPE -            361   1.4e-38  132.3   0.0   1   1   1.2e-41   1.7e-38  132.0   0.0     2   206     3   342     2   356 0.95 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|Q8Z9U9|RECF_YERPE -            361   9.1e-09   35.9   0.0   1   1   1.1e-11   1.7e-08   35.0   0.0     1    83     5   103     5   201 0.67 AAA domain
AAA_21               PF13304.1    303 sp|Q8Z9U9|RECF_YERPE -            361   3.8e-07   30.3   0.0   1   2   7.9e-09   1.2e-05   25.4   0.0     1    24    25    48    25    77 0.86 AAA domain
AAA_15               PF13175.1    415 sp|Q8Z9U9|RECF_YERPE -            361   2.3e-05   23.6   0.0   1   1   1.9e-08   2.8e-05   23.3   0.0     2    42     4    43     3    84 0.88 AAA ATPase domain
AAA_16               PF13191.1    185 sp|Q8Z9U9|RECF_YERPE -            361   0.00018   21.5   3.3   1   2   3.3e-05     0.048   13.6   0.0    28    63    27    68    14   111 0.78 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q8Z9U9|RECF_YERPE -            361    0.0003   20.2   0.0   1   1   8.8e-07    0.0013   18.2   0.0    16    46    16    46     9    55 0.80 P-loop containing region of AAA domain
ABC_tran             PF00005.22   137 sp|Q8Z9U9|RECF_YERPE -            361     0.012   15.9   0.0   1   1   2.2e-05     0.033   14.4   0.0    15    36    27    48    18   100 0.86 ABC transporter
AAA                  PF00004.24   132 sp|Q8Z9U9|RECF_YERPE -            361      0.07   13.3   0.0   1   1    0.0001      0.15   12.2   0.0     3    35    28    61    26    98 0.72 ATPase family associated with various cellular activities (AAA)
AAA_13               PF13166.1    712 sp|Q8Z9U9|RECF_YERPE -            361      0.25    9.7   0.0   1   1   0.00026      0.38    9.1   0.0    11    39    18    46     8    73 0.77 AAA domain
RecO_N               PF11967.3     80 sp|Q8ZD70|RECO_YERPE -            241     5e-24   83.9   0.0   1   1   1.1e-27   8.1e-24   83.2   0.0     5    78     4    76     1    78 0.96 Recombination protein O N terminal
RecO_C               PF02565.10   118 sp|Q8ZD70|RECO_YERPE -            241   3.9e-20   71.8   0.2   1   1   6.9e-24   5.1e-20   71.4   0.2     3   118    82   226    80   226 0.95 Recombination protein O C terminal
Toprim_4             PF13662.1     81 sp|Q8ZC97|RECR_YERPE -            201   8.7e-20   70.5   0.0   1   1   3.8e-23   1.4e-19   69.8   0.0     1    81    81   172    81   172 0.95 Toprim domain
RecR                 PF02132.10    41 sp|Q8ZC97|RECR_YERPE -            201   7.1e-15   54.1   2.2   1   1   2.3e-18   8.7e-15   53.8   1.1     2    41    39    78    38    78 0.95 RecR protein
Toprim               PF01751.17   100 sp|Q8ZC97|RECR_YERPE -            201   4.1e-07   29.9   0.0   1   1     3e-10   1.1e-06   28.5   0.0     2    88    83   165    82   173 0.86 Toprim domain
HHH                  PF00633.18    30 sp|Q8ZC97|RECR_YERPE -            201      0.18   11.5   0.4   1   1   0.00012      0.45   10.3   0.0    16    25    17    26    11    27 0.83 Helix-hairpin-helix motif
RecX                 PF02631.11   122 sp|P37867|RECX_YERPE -            187   6.1e-34  116.8   2.1   2   2   9.5e-38     7e-34  116.6   0.9     7   117    73   183    66   187 0.94 RecX family
PCRF                 PF03462.13   116 sp|Q8ZEX8|RF1_YERPE  -            360   9.5e-42  141.3   0.8   1   1   7.1e-45   2.1e-41  140.2   0.8     4   116    66   178    63   178 0.98 PCRF domain
RF-1                 PF00472.15   114 sp|Q8ZEX8|RF1_YERPE  -            360   8.9e-39  131.8   3.4   2   2   3.4e-42     1e-38  131.6   0.2     9   114   216   321   209   321 0.97 RF-1 domain
Corona_NS2A          PF05213.7    248 sp|Q8ZEX8|RF1_YERPE  -            360     0.018   14.4   0.5   1   1   9.4e-06     0.028   13.7   0.0    90   140     4    54     1    95 0.80 Coronavirus NS2A protein
Med14                PF08638.6    195 sp|Q8ZEX8|RF1_YERPE  -            360     0.042   13.0   0.1   2   2    0.0003      0.88    8.7   0.0    84   169   261   347   252   352 0.84 Mediator complex subunit MED14
I_LWEQ               PF01608.12   152 sp|Q8ZEX8|RF1_YERPE  -            360      0.33   10.8   3.1   1   2   6.2e-05      0.18   11.7   0.4    91   145    63   116    28   119 0.78 I/LWEQ domain
RF-1                 PF00472.15   114 sp|Q8ZHK4|RF2_YERPE  -            366   8.1e-40  135.1   0.7   1   1     3e-43   1.5e-39  134.3   0.7     2   114   227   338   226   338 0.97 RF-1 domain
PCRF                 PF03462.13   116 sp|Q8ZHK4|RF2_YERPE  -            366   6.7e-32  109.6   0.4   1   2   1.4e-35   6.7e-32  109.6   0.4     5   116    89   196    86   196 0.95 PCRF domain
GTP_EFTU             PF00009.22   188 sp|Q8ZIR0|RF3_YERPE  -            529     8e-44  149.3   0.0   1   1   4.1e-47   1.2e-43  148.7   0.0     3   187    13   277    11   278 0.92 Elongation factor Tu GTP binding domain
GTP_EFTU_D2          PF03144.20    74 sp|Q8ZIR0|RF3_YERPE  -            529   4.7e-12   45.8   0.2   1   1   5.5e-15   1.6e-11   44.1   0.2     2    74   314   380   313   380 0.97 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|Q8ZIR0|RF3_YERPE  -            529   0.00023   21.0   0.0   1   1   1.5e-07   0.00044   20.1   0.0     2   116    16   143    15   143 0.61 50S ribosome-binding GTPase
EFG_II               PF14492.1     75 sp|Q8ZIR0|RF3_YERPE  -            529    0.0027   17.5   0.0   1   1   1.8e-06    0.0053   16.5   0.0    13    72   404   462   394   465 0.82 Elongation Factor G, domain II
Miro                 PF08477.8    119 sp|Q8ZIR0|RF3_YERPE  -            529    0.0069   16.8   0.0   1   1   5.4e-06     0.016   15.6   0.0     4   119    18   145    15   145 0.75 Miro-like protein
RhaA                 PF06134.6    417 sp|P58507|RHAA_YERPE -            418  8.7e-228  756.2   0.0   1   1  1.4e-231    1e-227  756.0   0.0     2   417     4   418     3   418 1.00 L-rhamnose isomerase (RhaA)
NPP1                 PF05630.6    207 sp|P58507|RHAA_YERPE -            418     0.053   13.2   0.0   1   1   1.3e-05     0.095   12.4   0.0    27   103    50   124    42   146 0.87 Necrosis inducing protein (NPP1)
FGGY_N               PF00370.16   245 sp|Q8ZJ02|RHAB_YERPE -            485   9.8e-36  123.3   0.0   1   1   3.2e-39   1.6e-35  122.6   0.0     2   244     1   238     1   239 0.85 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|Q8ZJ02|RHAB_YERPE -            485   6.4e-27   94.4   0.0   1   1   2.2e-30   1.1e-26   93.7   0.0     1   191   248   429   248   436 0.88 FGGY family of carbohydrate kinases, C-terminal domain
FtsA                 PF14450.1    120 sp|Q8ZJ02|RHAB_YERPE -            485     0.097   12.5   0.0   1   1   2.6e-05      0.13   12.1   0.0     2    75     2   112     1   426 0.78 Cell division protein FtsA
Aldolase_II          PF00596.16   184 sp|Q8ZJ03|RHAD_YERPE -            274   1.4e-37  129.1   0.0   1   1   1.1e-41   1.6e-37  128.8   0.0     2   183    12   238    11   239 0.85 Class II Aldolase and Adducin N-terminal domain
DUF718               PF05336.8    106 sp|Q0WJY2|RHAM_YERPE -            104   2.1e-36  123.9   0.6   1   1   4.6e-40   2.3e-36  123.8   0.6     2   106     3   104     2   104 0.99 Domain of unknown function (DUF718)
Fucose_iso_C         PF02952.12   142 sp|Q0WJY2|RHAM_YERPE -            104     0.018   14.5   0.0   1   1   4.8e-06     0.024   14.1   0.0    73   129     6    54     1    63 0.84 L-fucose isomerase, C-terminal domain
Pilus_CpaD           PF09476.5    203 sp|Q0WJY2|RHAM_YERPE -            104     0.032   13.7   0.0   1   1   7.3e-06     0.036   13.5   0.0    86   154    17    85     3    94 0.77 Pilus biogenesis CpaD protein (pilus_cpaD)
RhaT                 PF06379.7    344 sp|Q8ZIZ8|RHAT_YERPE -            344  2.2e-227  753.5  35.5   1   1  1.6e-231  2.4e-227  753.4  35.5     1   344     1   344     1   344 1.00 L-rhamnose-proton symport protein (RhaT)
DEAD                 PF00270.24   169 sp|Q8ZAD8|RHLB_YERPE -            428   8.2e-42  142.5   0.0   1   2   6.5e-42   1.9e-38  131.5   0.0     1   167    33   206    33   208 0.95 DEAD/DEAH box helicase
DEAD                 PF00270.24   169 sp|Q8ZAD8|RHLB_YERPE -            428   8.2e-42  142.5   0.0   2   2   0.00032      0.95    8.9   0.0    35   103   246   314   242   328 0.84 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|Q8ZAD8|RHLB_YERPE -            428     8e-25   86.5   0.0   1   1   7.3e-28   2.2e-24   85.1   0.0     3    78   276   351   274   351 0.97 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|Q8ZAD8|RHLB_YERPE -            428     0.018   14.8   0.0   1   1   1.2e-05     0.036   13.8   0.0    32    91    53   121    47   202 0.68 Type III restriction enzyme, res subunit
AAA_22               PF13401.1    131 sp|Q8ZAD8|RHLB_YERPE -            428     0.077   13.1   0.1   1   1   0.00012      0.34   11.0   0.1    12   118    54   194    52   205 0.51 AAA domain
SNF2_N               PF00176.18   299 sp|Q8ZAD8|RHLB_YERPE -            428      0.14   10.8   0.0   1   1   7.6e-05      0.23   10.2   0.0    34   146    55   170    53   178 0.73 SNF2 family N-terminal domain
GTP_cyclohydro2      PF00925.15   169 sp|Q8ZEF0|RIBA_YERPE -            196   2.7e-67  225.2   0.0   1   1   2.1e-71   3.1e-67  225.0   0.0     2   169     4   171     3   171 0.99 GTP cyclohydrolase II
DHBP_synthase        PF00926.14   194 sp|Q8ZI56|RIBB_YERPE -            217   4.6e-80  267.4   0.3   1   1   1.1e-83   5.2e-80  267.2   0.3     1   193    16   208    16   209 0.99 3,4-dihydroxy-2-butanone 4-phosphate synthase
PyocinActivator      PF11112.3     76 sp|Q8ZI56|RIBB_YERPE -            217    0.0066   16.2   0.1   2   2   1.4e-05      0.07   12.9   0.1    57    75   198   216   194   217 0.92 Pyocin activator protein PrtN
CbiG_mid             PF11761.3     93 sp|Q8ZI56|RIBB_YERPE -            217     0.025   14.8   0.0   1   1   9.4e-06     0.046   13.9   0.0    19    92    14    86    11    87 0.76 Cobalamin biosynthesis central region
RimM                 PF01782.13    84 sp|Q8ZBU8|RIMM_YERPE -            182   1.3e-26   92.3   0.0   1   1   2.5e-30   1.9e-26   91.8   0.0     2    83    16    96    15    97 0.97 RimM N-terminal domain
PRC                  PF05239.11    79 sp|Q8ZBU8|RIMM_YERPE -            182   1.8e-09   37.3   0.2   1   1   4.7e-13   3.5e-09   36.4   0.2     1    73   103   177   103   181 0.88 PRC-barrel domain
DUF150               PF02576.12   141 sp|Q8ZBC0|RIMP_YERPE -            152   1.4e-46  157.5   0.0   1   1   1.1e-50   1.6e-46  157.3   0.0     1   141    13   148    13   148 0.96 Uncharacterised BCR, YhbC family COG0779
DMRL_synthase        PF00885.14   144 sp|Q8ZC41|RISB_YERPE -            156   5.2e-58  194.7   0.7   1   1     4e-62   5.9e-58  194.6   0.7     2   143    11   153    10   154 0.98 6,7-dimethyl-8-ribityllumazine synthase
Ribosomal_L10        PF00466.15   100 sp|Q8ZAP3|RL10_YERPE -            165   2.6e-26   91.4   0.0   1   1   2.4e-30   3.6e-26   90.9   0.0     3   100     5   101     3   101 0.98 Ribosomal protein L10
Ribosomal_L11_N      PF03946.9     60 sp|Q8ZAP1|RL11_YERPE -            142   1.6e-32  110.7   0.2   1   1   5.2e-36   2.5e-32  110.0   0.2     1    60     8    67     8    67 0.99 Ribosomal protein L11, N-terminal domain
Ribosomal_L11        PF00298.14    69 sp|Q8ZAP1|RL11_YERPE -            142   1.6e-28   98.6   2.2   1   1   6.1e-32     3e-28   97.7   2.2     1    69    72   140    72   140 0.99 Ribosomal protein L11, RNA binding domain
DUF3140              PF11338.3     92 sp|Q8ZAP1|RL11_YERPE -            142     0.094   12.8   0.1   1   1     4e-05       0.2   11.8   0.1    25    67    88   130    78   137 0.82 Protein of unknown function (DUF3140)
Ribosomal_L13        PF00572.13   128 sp|Q0WB88|RL13_YERPE -            142   7.3e-55  184.4   0.2   1   1   1.1e-58   8.3e-55  184.2   0.2     1   127    15   141    15   142 0.99 Ribosomal protein L13
DUF3659              PF12396.3     64 sp|Q0WB88|RL13_YERPE -            142     0.078   12.6   0.0   1   1   1.8e-05      0.13   11.9   0.0     8    38    10    40     6    52 0.89 Protein of unknown function (DUF3659)
Ribosomal_L14        PF00238.14   122 sp|Q7CFT7|RL14_YERPE -            123   3.9e-54  181.6   0.8   1   1   5.8e-58   4.3e-54  181.4   0.8     1   122     1   123     1   123 0.98 Ribosomal protein L14p/L23e
Gp58                 PF07902.6    601 sp|Q7CFT7|RL14_YERPE -            123     0.014   13.6   0.2   1   1   2.2e-06     0.017   13.3   0.2   338   387    34    85    25    99 0.86 gp58-like protein
Ribosomal_L18e       PF00828.14   129 sp|Q8ZJ93|RL15_YERPE -            144   4.7e-23   81.9   1.7   1   1     4e-27   5.9e-23   81.6   1.7     3   127    27   143    26   144 0.87 Ribosomal protein L18e/L15
Ribosomal_L16        PF00252.13   133 sp|Q8ZJA5|RL16_YERPE -            136   6.6e-51  171.5   0.6   1   1     1e-54   7.4e-51  171.3   0.6     1   132     4   131     4   132 0.97 Ribosomal protein L16p/L10e
DUF982               PF06169.7     76 sp|Q8ZJA5|RL16_YERPE -            136     0.086   12.5   5.4   1   3   0.00011      0.84    9.4   0.7    43    71    33    61    30    66 0.90 Protein of unknown function (DUF982)
Ribosomal_L17        PF01196.14    97 sp|Q7CFS8|RL17_YERPE -            129   7.9e-38  128.9   0.0   1   1   6.5e-42   9.6e-38  128.6   0.0     1    97    20   116    20   116 0.99 Ribosomal protein L17
Ribosomal_L18p       PF00861.17   119 sp|Q8ZJ96|RL18_YERPE -            117   3.7e-37  127.1   4.9   1   1   2.7e-41     4e-37  127.0   4.9     2   119     2   117     1   117 0.95 Ribosomal L18p/L5e family
Ribosomal_L19        PF01245.15   113 sp|Q8ZBV0|RL19_YERPE -            115   7.1e-50  167.5   2.7   1   1   5.3e-54   7.9e-50  167.3   2.7     2   112     3   113     2   114 0.99 Ribosomal protein L19
Ribosomal_L1         PF00687.16   220 sp|Q8ZAP2|RL1_YERPE  -            234   2.5e-49  167.5   0.4   1   1     2e-53     3e-49  167.3   0.4    14   219    32   220     5   221 0.92 Ribosomal protein L1p/L10e family
Ribosomal_L20        PF00453.13   108 sp|Q8ZDW8|RL20_YERPE -            118   5.9e-48  161.2   8.8   1   1   9.1e-52   6.7e-48  161.0   8.8     1   108     2   109     2   109 0.99 Ribosomal protein L20
ScpA_ScpB            PF02616.9    242 sp|Q8ZDW8|RL20_YERPE -            118      0.03   13.9   0.1   1   1   5.2e-06     0.038   13.5   0.1    83   140    46   104    35   116 0.85 ScpA/B protein
Ribosomal_L21p       PF00829.16    96 sp|Q0WBD7|RL21_YERPE -            103   4.7e-39  132.4   0.8   1   1   3.6e-43   5.3e-39  132.2   0.8     1    96     1    96     1    96 0.99 Ribosomal prokaryotic L21 protein
Ribosomal_L22        PF00237.14   105 sp|Q8ZJA7|RL22_YERPE -            110   2.5e-41  139.8   1.7   1   1   1.8e-45   2.7e-41  139.7   1.7     1   104     5   108     5   109 0.99 Ribosomal protein L22p/L17e
Ribosomal_L23        PF00276.15    92 sp|P69963|RL23_YERPE -            100   8.9e-32  108.9   0.4   1   1   1.3e-35   9.7e-32  108.7   0.4     2    89     9    96     8    99 0.97 Ribosomal protein L23
ubiquitin            PF00240.18    69 sp|P69963|RL23_YERPE -            100     0.041   13.2   0.2   1   1     8e-06     0.059   12.7   0.2     4    35    26    57    23    67 0.86 Ubiquitin family
KOW                  PF00467.24    32 sp|Q8ZJA1|RL24_YERPE -            104   1.4e-05   24.6   3.6   1   1   2.1e-09   3.1e-05   23.5   3.6     2    32     8    37     7    37 0.92 KOW motif
Ribosomal_L25p       PF01386.14    88 sp|Q8ZGM4|RL25_YERPE -             94   4.3e-28   97.2   0.1   1   1   3.3e-32   4.8e-28   97.1   0.1     1    88     4    91     4    91 0.99 Ribosomal L25p family
Ribosomal_L27        PF01016.14    81 sp|Q8ZBA7|RL27_YERPE -             85   4.9e-40  135.1   2.2   1   1   7.3e-44   5.4e-40  135.0   2.2     1    80     2    82     2    83 0.98 Ribosomal L27 protein
Peptidase_M23        PF01551.17    96 sp|Q8ZBA7|RL27_YERPE -             85      0.04   13.9   0.0   1   1   9.6e-06     0.071   13.1   0.0     1    41    44    84    44    85 0.91 Peptidase family M23
Ribosomal_L28        PF00830.14    61 sp|Q8ZJP2|RL28_YERPE -             78   1.1e-30  105.1   1.0   1   1   1.8e-34   1.3e-30  104.9   1.0     1    61     3    63     3    63 0.99 Ribosomal L28 family
Asparaginase_II      PF06089.7    325 sp|Q8ZJP2|RL28_YERPE -             78     0.045   12.4   0.0   1   1   6.9e-06     0.051   12.2   0.0   208   262    18    72     7    76 0.84 L-asparaginase II
Ribosomal_L29        PF00831.18    58 sp|Q8ZJA4|RL29_YERPE -             63   1.8e-24   85.1   7.4   1   1   2.7e-28     2e-24   85.0   7.4     1    58     3    60     3    60 0.99 Ribosomal L29 protein
MRP-L47              PF06984.8     87 sp|Q8ZJA4|RL29_YERPE -             63   0.00022   21.0   3.5   1   1   3.6e-08   0.00027   20.7   3.5    24    86     2    59     1    60 0.92 Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L2_C       PF03947.13   130 sp|P60436|RL2_YERPE  -            274   1.8e-55  186.2   2.3   1   1     4e-59   2.9e-55  185.5   2.3     1   129   124   250   124   251 0.98 Ribosomal Proteins L2, C-terminal domain
Ribosomal_L2         PF00181.18    77 sp|P60436|RL2_YERPE  -            274   6.7e-37  125.3   0.7   1   2   7.2e-40   5.3e-36  122.4   1.0     1    76    42   117    42   118 0.99 Ribosomal Proteins L2, RNA binding domain
Ribosomal_L30        PF00327.15    52 sp|Q7CFT2|RL30_YERPE -             59   7.9e-22   76.6   0.3   1   1   5.9e-26   8.7e-22   76.4   0.3     1    52     4    55     4    55 0.98 Ribosomal protein L30p/L7e
Ribosomal_L31        PF01197.13    69 sp|P58472|RL31B_YERPE -             86   1.2e-24   86.1   0.3   1   1   9.1e-29   1.4e-24   85.8   0.3     1    68     1    79     1    80 0.99 Ribosomal protein L31
Ribosomal_L31        PF01197.13    69 sp|P58471|RL31_YERPE -             71   9.5e-29   99.2   0.1   1   1   7.7e-33   1.1e-28   98.9   0.1     1    67     1    65     1    66 0.98 Ribosomal protein L31
Ribosomal_L32p       PF01783.18    56 sp|Q8ZFT9|RL32_YERPE -             55   7.8e-19   67.6   0.1   1   1   5.7e-23   8.4e-19   67.5   0.1     1    54     2    54     2    55 0.99 Ribosomal L32p protein family
Ribosomal_L33        PF00471.15    48 sp|Q8ZJP1|RL33_YERPE -             55   9.3e-24   83.4   1.5   1   1     7e-28     1e-23   83.2   1.5     1    48     6    53     6    53 0.99 Ribosomal protein L33
Ribosomal_L34        PF00468.12    44 sp|Q8Z9U5|RL34_YERPE -             46   1.4e-23   82.2   9.9   1   1     1e-27   1.5e-23   82.1   9.9     1    44     1    44     1    44 0.99 Ribosomal protein L34
Ribosomal_L35p       PF01632.14    61 sp|Q8ZDW7|RL35_YERPE -             65   3.2e-26   90.9   6.9   1   1   4.7e-30   3.5e-26   90.8   6.9     1    61     2    62     2    62 0.98 Ribosomal protein L35
DUF3148              PF11347.3     63 sp|Q8ZDW7|RL35_YERPE -             65     0.066   12.8   0.0   1   1   1.4e-05       0.1   12.2   0.0    24    43    44    63    36    65 0.92 Protein of unknown function (DUF3148)
Ribosomal_L36        PF00444.13    38 sp|Q8ZJ91|RL361_YERPE -             38   2.3e-21   75.4  10.5   1   1   1.7e-25   2.5e-21   75.3  10.5     1    38     1    38     1    38 1.00 Ribosomal protein L36
Ribosomal_L36        PF00444.13    38 sp|Q8ZC86|RL362_YERPE -             47   4.6e-20   71.3   3.1   1   1   4.4e-24   6.6e-20   70.8   3.1     1    38     1    41     1    41 0.99 Ribosomal protein L36
Ribosomal_L3         PF00297.17   263 sp|Q8ZJA9|RL3_YERPE  -            209   2.7e-48  164.6   9.8   1   1   5.5e-51   8.1e-47  159.8   9.8     1   263     8   204     8   204 0.98 Ribosomal protein L3
Ribosomal_L4         PF00573.17   192 sp|P60730|RL4_YERPE  -            201   1.3e-65  220.3   1.1   1   1     1e-69   1.5e-65  220.2   1.1     2   191    13   198    12   199 0.99 Ribosomal protein L4/L1 family
Ribosomal_L5_C       PF00673.16    95 sp|Q8ZJA0|RL5_YERPE  -            179   4.3e-42  141.7   0.0   1   1   8.8e-46   6.6e-42  141.1   0.0     1    94    84   177    84   178 0.99 ribosomal L5P family C-terminus
Ribosomal_L5         PF00281.14    56 sp|Q8ZJA0|RL5_YERPE  -            179   1.1e-25   89.1   0.1   1   1   2.6e-29   1.9e-25   88.3   0.1     1    56    24    80    24    80 0.98 Ribosomal protein L5
Ribosomal_L6         PF00347.18    77 sp|Q7CFT4|RL6_YERPE  -            177   3.2e-41  139.6   0.3   1   2   2.3e-22   3.4e-18   65.9   0.1     1    77    11    82    11    82 0.99 Ribosomal protein L6
Ribosomal_L6         PF00347.18    77 sp|Q7CFT4|RL6_YERPE  -            177   3.2e-41  139.6   0.3   2   2   2.3e-24   3.4e-20   72.3   0.0     1    76    90   164    90   165 0.98 Ribosomal protein L6
Ribosomal_L12        PF00542.14    68 sp|Q8ZAP4|RL7_YERPE  -            122   2.8e-32  110.5   5.8   1   1   1.3e-35   4.9e-32  109.7   5.8     1    68    55   122    55   122 0.99 Ribosomal protein L7/L12 C-terminal domain
Ribosomal_60s        PF00428.14    88 sp|Q8ZAP4|RL7_YERPE  -            122     0.006   16.9   4.0   1   3   1.6e-06     0.006   16.9   4.0    26    69    12    53     3    57 0.63 60s Acidic ribosomal protein
DUF1933              PF09147.5    201 sp|Q8ZAP4|RL7_YERPE  -            122      0.06   12.7   0.1   1   1   1.7e-05     0.063   12.6   0.1    75   130    17    73     5   113 0.88 Domain of unknown function (DUF1933)
Herpes_UL49_1        PF03117.9    246 sp|Q8ZAP4|RL7_YERPE  -            122      0.14   11.1   0.0   1   1   4.9e-05      0.18   10.8   0.0   160   213    12    67     9    85 0.78 UL49 family
Ribosomal_L9_C       PF03948.9     87 sp|Q8ZB84|RL9_YERPE  -            150   2.7e-26   91.4   0.7   1   1   5.6e-30   4.2e-26   90.8   0.7     2    87    63   149    62   149 0.97 Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N       PF01281.14    48 sp|Q8ZB84|RL9_YERPE  -            150   1.9e-22   78.2   0.4   1   1   5.1e-26   3.8e-22   77.2   0.4     1    47     1    47     1    48 0.97 Ribosomal protein L9, N-terminal domain
SpoU_methylase       PF00588.14   142 sp|Q8ZIV4|RLMB_YERPE -            246   1.3e-40  138.5   0.0   1   1   2.2e-44   1.6e-40  138.2   0.0     2   142    96   236    95   236 0.96 SpoU rRNA Methylase family
SpoU_sub_bind        PF08032.7     76 sp|Q8ZIV4|RLMB_YERPE -            246   1.6e-19   69.8   0.0   1   2   1.2e-22   9.2e-19   67.3   0.0     1    72     4    76     4    80 0.96 RNA 2'-O ribose methyltransferase substrate binding
tRNA_U5-meth_tr      PF05958.6    352 sp|Q8ZGG1|RLMC_YERPE -            376   8.9e-21   73.9   0.0   1   1   1.9e-21   2.5e-18   65.8   0.0   170   350   206   373    20   375 0.70 tRNA (Uracil-5-)-methyltransferase
Methyltransf_31      PF13847.1    152 sp|Q8ZGG1|RLMC_YERPE -            376   1.9e-11   43.7   0.0   1   1   2.8e-14   3.8e-11   42.8   0.0     6    67   236   294   231   342 0.88 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZGG1|RLMC_YERPE -            376   5.6e-08   32.8   0.0   1   1   7.7e-11     1e-07   31.9   0.0     4    80   237   310   234   355 0.85 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZGG1|RLMC_YERPE -            376   9.2e-08   31.6   0.0   1   1   1.1e-10   1.5e-07   30.9   0.0    28   108   230   310   212   330 0.83 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|Q8ZGG1|RLMC_YERPE -            376   1.8e-05   25.2   0.0   1   1   3.2e-08   4.3e-05   24.0   0.0     4    77   236   307   233   334 0.78 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q8ZGG1|RLMC_YERPE -            376   8.7e-05   22.1   0.0   1   1   1.2e-07   0.00016   21.3   0.0     4    83   237   313   234   338 0.88 RNA cap guanine-N2 methyltransferase
Cons_hypoth95        PF03602.10   183 sp|Q8ZGG1|RLMC_YERPE -            376    0.0012   18.2   0.0   1   1   1.6e-06    0.0021   17.4   0.0    35   123   228   309   213   342 0.79 Conserved hypothetical protein 95
Methyltransf_4       PF02390.12   197 sp|Q8ZGG1|RLMC_YERPE -            376     0.009   15.0   0.0   1   1     1e-05     0.014   14.4   0.0    22    80   236   292   208   307 0.81 Putative methyltransferase
Methyltransf_25      PF13649.1    101 sp|Q8ZGG1|RLMC_YERPE -            376     0.047   14.0   0.0   1   1   8.8e-05      0.12   12.7   0.0     3    65   239   297   237   325 0.80 Methyltransferase domain
UPF0020              PF01170.13   180 sp|Q8ZGG1|RLMC_YERPE -            376     0.049   13.2   0.0   1   1   7.5e-05       0.1   12.1   0.0    30   115   235   309   211   313 0.75 Putative RNA methylase family UPF0020
Methyltransf_12      PF08242.7     99 sp|Q8ZGG1|RLMC_YERPE -            376       0.1   13.0   0.0   1   1   0.00014      0.18   12.2   0.0     2    54   239   289   238   299 0.84 Methyltransferase domain
FtsJ                 PF01728.14   181 sp|Q8ZBB5|RLME_YERPE -            209   1.4e-57  194.5   0.0   1   1     7e-61   1.7e-57  194.3   0.0     1   181    31   207    31   207 0.98 FtsJ-like methyltransferase
Methyltransf_23      PF13489.1    161 sp|Q8ZBB5|RLME_YERPE -            209    0.0021   17.7   0.0   1   1   2.1e-06    0.0053   16.4   0.0    20   119    49   169    31   192 0.74 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZBB5|RLME_YERPE -            209     0.013   16.0   0.3   1   1   5.5e-05      0.14   12.7   0.3     4   109    54   163    51   166 0.76 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZBB5|RLME_YERPE -            209     0.048   13.6   0.0   1   1   3.9e-05     0.096   12.7   0.0    52   113    93   163    51   167 0.76 Methyltransferase domain
Alba                 PF01918.16    70 sp|Q8ZBB5|RLME_YERPE -            209     0.099   12.2   0.0   1   1   0.00012      0.29   10.7   0.0     3    40   163   207   162   209 0.90 Alba
Methyltransf_10      PF05971.7    299 sp|Q7CJ72|RLMF_YERPE -            336  4.3e-121  403.6   0.0   1   1    2e-124  4.9e-121  403.4   0.0     3   298    25   322    23   323 0.98 Protein of unknown function (DUF890)
MTS                  PF05175.9    170 sp|Q7CJ72|RLMF_YERPE -            336     3e-05   23.4   0.0   1   1   2.4e-08   5.9e-05   22.5   0.0    27   119   123   223   111   232 0.76 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|Q7CJ72|RLMF_YERPE -            336   0.00028   20.9   0.0   1   1   1.8e-07   0.00044   20.2   0.0    20    92   149   224    94   321 0.71 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CJ72|RLMF_YERPE -            336     0.019   15.5   0.0   1   1   2.3e-05     0.056   14.0   0.0     2    87   128   220   126   238 0.71 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q7CJ72|RLMF_YERPE -            336     0.024   15.1   0.0   1   1   2.1e-05     0.052   14.0   0.0     1    78   132   214   132   234 0.72 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q7CJ72|RLMF_YERPE -            336      0.13   12.0   0.0   1   1   0.00011      0.26   10.9   0.0    21    60   126   186   104   222 0.68 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q0WJ78|RLMG_YERPE -            395   5.8e-52  175.4   0.0   1   1   6.9e-55   9.3e-52  174.8   0.0     2   170   200   371   199   371 0.98 Methyltransferase small domain
Methyltransf_31      PF13847.1    152 sp|Q0WJ78|RLMG_YERPE -            395   5.5e-08   32.5   0.0   1   1   1.5e-10     2e-07   30.7   0.0     5   118   231   349   228   385 0.80 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q0WJ78|RLMG_YERPE -            395   4.4e-07   29.9   1.0   2   2   1.7e-09   2.3e-06   27.5   0.0     2   113   231   339   230   342 0.81 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q0WJ78|RLMG_YERPE -            395   1.8e-05   25.2   0.1   1   1   7.7e-08    0.0001   22.8   0.0     3   109   231   339   230   342 0.79 Methyltransferase domain
PrmA                 PF06325.8    295 sp|Q0WJ78|RLMG_YERPE -            395   6.8e-05   22.1   0.0   2   2   5.2e-07    0.0007   18.7   0.0   164   232   232   306   224   341 0.74 Ribosomal protein L11 methyltransferase (PrmA)
Cons_hypoth95        PF03602.10   183 sp|Q0WJ78|RLMG_YERPE -            395    0.0018   17.6   0.0   1   1   2.4e-06    0.0032   16.8   0.0    41   134   229   319   218   364 0.76 Conserved hypothetical protein 95
Methyltransf_12      PF08242.7     99 sp|Q0WJ78|RLMG_YERPE -            395    0.0023   18.3   0.0   1   1     5e-06    0.0068   16.8   0.0     2    99   235   337   234   337 0.87 Methyltransferase domain
Methyltransf_16      PF10294.4    174 sp|Q0WJ78|RLMG_YERPE -            395    0.0057   16.1   0.1   2   2   8.1e-05      0.11   11.9   0.0    49    94   232   278   227   302 0.84 Putative methyltransferase
Methyltransf_11      PF08241.7     95 sp|Q0WJ78|RLMG_YERPE -            395     0.014   15.8   0.1   1   1   5.6e-05     0.075   13.5   0.0     2    95   235   339   234   339 0.86 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q0WJ78|RLMG_YERPE -            395     0.024   14.9   0.1   1   1   4.6e-05     0.062   13.6   0.1     1   101   233   335   233   335 0.65 Methyltransferase domain
NTP_transf_5         PF14907.1    249 sp|Q0WJ78|RLMG_YERPE -            395      0.13   11.5   0.4   1   2   0.00038      0.51    9.6   0.0   156   205    30    79     8    97 0.80 Uncharacterised nucleotidyltransferase
SPOUT_MTase          PF02590.12   155 sp|Q8ZDG3|RLMH_YERPE -            156   1.4e-52  177.5   0.0   1   1     2e-56   1.5e-52  177.4   0.0     1   155     1   154     1   154 1.00 Predicted SPOUT methyltransferase
Peripla_BP_6         PF13458.1    343 sp|Q8ZDG3|RLMH_YERPE -            156      0.12   11.7   0.0   1   1   1.7e-05      0.13   11.5   0.0   166   217    72   123    49   149 0.85 Periplasmic binding protein
Methyltrans_SAM      PF10672.4    286 sp|Q7CHM1|RLMI_YERPE -            396   3.8e-28   98.1   0.0   1   1   6.2e-31   5.7e-28   97.5   0.0    12   265   110   370   103   381 0.77 S-adenosylmethionine-dependent methyltransferase
Cons_hypoth95        PF03602.10   183 sp|Q7CHM1|RLMI_YERPE -            396   6.2e-11   42.0   0.0   1   1   9.9e-14   9.2e-11   41.4   0.0    41   123   219   302   211   329 0.86 Conserved hypothetical protein 95
Methyltransf_26      PF13659.1    117 sp|Q7CHM1|RLMI_YERPE -            396   4.8e-10   39.5   0.0   1   1   1.3e-12   1.2e-09   38.2   0.0     1   116   221   340   221   341 0.84 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q7CHM1|RLMI_YERPE -            396   5.4e-10   39.0   0.1   1   1   9.1e-13   8.4e-10   38.4   0.1    19   117   234   346   220   380 0.74 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CHM1|RLMI_YERPE -            396   1.1e-07   32.4   0.0   1   1   3.5e-10   3.2e-07   30.9   0.0    12   108   231   336   221   340 0.73 Methyltransferase domain
Met_10               PF02475.11   200 sp|Q7CHM1|RLMI_YERPE -            396   7.9e-06   25.6   0.0   1   1   1.3e-08   1.2e-05   25.0   0.0    70   183   187   307   174   324 0.79 Met-10+ like-protein
MTS                  PF05175.9    170 sp|Q7CHM1|RLMI_YERPE -            396     8e-06   25.3   0.0   1   1   1.3e-08   1.2e-05   24.7   0.0    42   137   231   336   212   357 0.78 Methyltransferase small domain
Methyltransf_25      PF13649.1    101 sp|Q7CHM1|RLMI_YERPE -            396   0.00037   20.8   0.0   1   1   8.5e-07   0.00079   19.7   0.0    22    73   241   299   225   333 0.77 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q7CHM1|RLMI_YERPE -            396   0.00047   19.7   0.0   1   1   8.6e-07    0.0008   18.9   0.0     4    79   224   302   221   304 0.82 RNA cap guanine-N2 methyltransferase
UPF0020              PF01170.13   180 sp|Q7CHM1|RLMI_YERPE -            396    0.0016   18.0   0.0   1   1   2.9e-06    0.0027   17.3   0.0    26   115   218   302   213   310 0.85 Putative RNA methylase family UPF0020
PrmA                 PF06325.8    295 sp|Q7CHM1|RLMI_YERPE -            396    0.0017   17.5   0.0   1   1   2.6e-06    0.0025   17.0   0.0   167   230   226   298   213   300 0.73 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11      PF08241.7     95 sp|Q7CHM1|RLMI_YERPE -            396     0.012   16.0   0.2   1   1     6e-05     0.055   13.9   0.0    10    66   234   299   229   316 0.82 Methyltransferase domain
TRM                  PF02005.11   377 sp|Q7CHM1|RLMI_YERPE -            396     0.012   14.5   0.0   1   1   1.8e-05     0.017   14.0   0.0    51   146   222   320   188   327 0.82 N2,N2-dimethylguanosine tRNA methyltransferase
Methyltransf_16      PF10294.4    174 sp|Q7CHM1|RLMI_YERPE -            396     0.051   13.0   0.0   1   1   8.8e-05     0.082   12.3   0.0    30   126   204   299   197   306 0.71 Putative methyltransferase
Methyltransf_12      PF08242.7     99 sp|Q7CHM1|RLMI_YERPE -            396     0.065   13.7   0.1   1   1   0.00021       0.2   12.1   0.1    19    72   242   299   228   335 0.78 Methyltransferase domain
PUA                  PF01472.15    74 sp|Q7CHM1|RLMI_YERPE -            396     0.067   12.9   0.0   1   1   0.00014      0.13   12.0   0.0     4    62     6    65     4    75 0.85 PUA domain
UPF0020              PF01170.13   180 sp|Q7CHK7|RLMKL_YERPE -            706   5.6e-62  208.4   0.0   1   2   2.4e-58   2.5e-55  186.8   0.0     1   179   162   375   162   376 0.95 Putative RNA methylase family UPF0020
UPF0020              PF01170.13   180 sp|Q7CHK7|RLMKL_YERPE -            706   5.6e-62  208.4   0.0   2   2   5.1e-07   0.00054   19.5   0.0    13   153   525   658   519   671 0.86 Putative RNA methylase family UPF0020
Methyltransf_26      PF13659.1    117 sp|Q7CHK7|RLMKL_YERPE -            706     1e-26   93.2   0.0   1   2   4.1e-20   4.3e-17   62.2   0.0     4    97   193   329   190   349 0.94 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q7CHK7|RLMKL_YERPE -            706     1e-26   93.2   0.0   2   2     1e-09   1.1e-06   28.6   0.0     5   114   543   655   539   658 0.82 Methyltransferase domain
Methyltrans_SAM      PF10672.4    286 sp|Q7CHK7|RLMKL_YERPE -            706   2.8e-19   69.0   0.1   1   1   4.2e-22   4.4e-19   68.4   0.1    60   246   474   664   429   687 0.83 S-adenosylmethionine-dependent methyltransferase
THUMP                PF02926.12   144 sp|Q7CHK7|RLMKL_YERPE -            706   1.3e-15   57.5   0.0   1   1   2.5e-18   2.6e-15   56.5   0.0    19   142    23   152    11   154 0.91 THUMP domain
Cons_hypoth95        PF03602.10   183 sp|Q7CHK7|RLMKL_YERPE -            706   3.7e-14   52.5   0.0   3   3   1.4e-12   1.5e-09   37.5   0.0    38   145   535   640   529   663 0.83 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|Q7CHK7|RLMKL_YERPE -            706   6.8e-14   51.7   0.0   2   4   1.9e-05      0.02   14.4   0.0    25    83   252   312   242   417 0.83 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q7CHK7|RLMKL_YERPE -            706   6.8e-14   51.7   0.0   4   4   1.9e-08     2e-05   24.2   0.0    31   112   564   658   551   695 0.82 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q7CHK7|RLMKL_YERPE -            706     1e-10   41.2   0.0   1   2   9.4e-06    0.0099   15.2   0.0    61   115   261   319   251   336 0.81 Methyltransferase small domain
MTS                  PF05175.9    170 sp|Q7CHK7|RLMKL_YERPE -            706     1e-10   41.2   0.0   2   2   5.5e-08   5.8e-05   22.5   0.0    31   143   538   658   519   684 0.78 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|Q7CHK7|RLMKL_YERPE -            706   9.2e-10   39.0   0.2   1   2   0.00015      0.16   12.5   0.1    24    71   254   303   245   506 0.88 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CHK7|RLMKL_YERPE -            706   9.2e-10   39.0   0.2   2   2   3.4e-07   0.00036   21.0   0.0    15   110   552   655   542   657 0.77 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q7CHK7|RLMKL_YERPE -            706   8.3e-08   32.6   0.0   2   2   1.3e-06    0.0013   19.1   0.0    18    95   560   654   549   654 0.80 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q7CHK7|RLMKL_YERPE -            706   1.4e-07   31.1   0.0   1   2   8.9e-05     0.095   12.2   0.0    24    81   257   313   251   315 0.93 RNA cap guanine-N2 methyltransferase
Methyltransf_15      PF09445.5    164 sp|Q7CHK7|RLMKL_YERPE -            706   1.4e-07   31.1   0.0   2   2   5.3e-06    0.0056   16.2   0.0     6    95   544   633   540   655 0.80 RNA cap guanine-N2 methyltransferase
Methyltransf_25      PF13649.1    101 sp|Q7CHK7|RLMKL_YERPE -            706   4.7e-07   30.1   0.0   1   2   0.00066       0.7   10.2   0.0    18    73   217   308   193   336 0.66 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q7CHK7|RLMKL_YERPE -            706   4.7e-07   30.1   0.0   2   2   6.5e-06    0.0069   16.7   0.0    24   101   561   650   545   650 0.79 Methyltransferase domain
N6_Mtase             PF02384.11   311 sp|Q7CHK7|RLMKL_YERPE -            706   0.00032   19.8   0.0   1   2   9.1e-05     0.097   11.7   0.0    45   138   188   315   175   324 0.83 N-6 DNA Methylase
Methyltransf_3       PF01596.12   205 sp|Q7CHK7|RLMKL_YERPE -            706    0.0022   17.0   0.0   1   2   0.00073      0.78    8.7   0.0    72   113   257   298   249   303 0.87 O-methyltransferase
Methyltransf_24      PF13578.1    106 sp|Q7CHK7|RLMKL_YERPE -            706    0.0052   17.5   0.0   2   2   0.00011      0.12   13.2   0.0    24   103   562   654   544   656 0.70 Methyltransferase domain
FtsJ                 PF01728.14   181 sp|Q8ZH78|RLMM_YERPE -            368   2.2e-07   31.0   0.0   1   1   9.1e-11   4.5e-07   30.0   0.0     3    99   187   279   185   324 0.72 FtsJ-like methyltransferase
Spt5-NGN             PF03439.8     84 sp|Q8ZH78|RLMM_YERPE -            368   0.00047   19.8   0.2   1   1   2.5e-07    0.0012   18.5   0.0     5    66     7    62     5    76 0.90 Early transcription elongation factor of RNA pol II, NGN section
Radical_SAM          PF04055.16   166 sp|Q7CJM9|RLMN_YERPE -            398   1.1e-13   51.7   0.0   1   1   5.5e-17   2.7e-13   50.4   0.0     2   161   134   305   133   310 0.76 Radical SAM superfamily
Fer4_14              PF13394.1    119 sp|Q7CJM9|RLMN_YERPE -            398   3.4e-05   23.8   0.0   1   1   1.8e-08   8.8e-05   22.5   0.0     7    76   138   211   135   253 0.67 4Fe-4S single cluster domain
Fer4_12              PF13353.1    139 sp|Q7CJM9|RLMN_YERPE -            398     0.011   15.8   0.0   1   1   4.2e-06     0.021   14.9   0.0    13    73   137   203   127   257 0.74 4Fe-4S single cluster domain
DPBB_1               PF03330.13    78 sp|Q8ZDG6|RLPA_YERPE -            360   3.4e-18   65.4   0.0   1   1   9.5e-22   7.1e-18   64.3   0.0     4    77    78   164    75   165 0.87 Rare lipoprotein A (RlpA)-like double-psi beta-barrel
SPOR                 PF05036.8     76 sp|Q8ZDG6|RLPA_YERPE -            360   5.6e-16   58.4   1.4   1   1   1.8e-19   1.3e-15   57.2   1.4     2    75   286   357   285   358 0.93 Sporulation related domain
PseudoU_synth_2      PF00849.17   164 sp|Q8ZIK1|RLUA_YERPE -            206   9.3e-29  100.3   0.0   1   1   8.1e-33   1.2e-28  100.0   0.0     1   163     9   156     9   157 0.90 RNA pseudouridylate synthase
PseudoU_synth_2      PF00849.17   164 sp|Q8ZEG0|RLUB_YERPE -            318     9e-18   64.6   0.0   1   1   4.3e-21   3.2e-17   62.8   0.0     2   161    69   199    68   202 0.83 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|Q8ZEG0|RLUB_YERPE -            318   3.1e-11   42.5   0.3   1   1   1.1e-14     8e-11   41.2   0.3     2    44     4    44     3    46 0.94 S4 domain
PseudoU_synth_2      PF00849.17   164 sp|Q8ZFU1|RLUC_YERPE -            320   9.9e-31  106.7   0.0   1   1   4.3e-34   1.6e-30  106.1   0.0     2   163   102   249   101   250 0.92 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|Q8ZFU1|RLUC_YERPE -            320   1.3e-09   37.2   0.6   1   1   7.1e-13   2.6e-09   36.3   0.6     1    48    20    66    20    66 0.91 S4 domain
HTH_17               PF12728.2     51 sp|Q8ZFU1|RLUC_YERPE -            320       0.1   12.8   0.2   1   1   5.4e-05       0.2   11.9   0.2     8    34    28    53    27    59 0.85 Helix-turn-helix domain
PseudoU_synth_2      PF00849.17   164 sp|Q8ZBV7|RLUD_YERPE -            325   3.2e-32  111.6   0.1   1   1   1.3e-35   4.7e-32  111.0   0.1     1   164    92   242    92   242 0.96 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|Q8ZBV7|RLUD_YERPE -            325   1.1e-11   43.9   0.0   1   1   5.2e-15   1.9e-11   43.1   0.0     1    48    18    65    18    65 0.96 S4 domain
TruB_N               PF01509.13   149 sp|Q8ZBV7|RLUD_YERPE -            325     0.018   15.1   0.0   1   1   9.1e-06     0.034   14.3   0.0     3    54   126   180   125   206 0.78 TruB family pseudouridylate synthase (N terminal domain)
S4_2                 PF13275.1     65 sp|Q8ZBV7|RLUD_YERPE -            325     0.029   13.9   0.2   1   1   2.2e-05      0.08   12.5   0.2    26    60    36    70    34    73 0.92 S4 domain
PseudoU_synth_2      PF00849.17   164 sp|Q8ZFQ3|RLUE_YERPE -            208   1.9e-13   50.5   0.1   1   1   4.2e-16   6.3e-12   45.6   0.1    39   164    60   176    30   176 0.75 RNA pseudouridylate synthase
RmuC                 PF02646.11   305 sp|Q8ZAL8|RMUC_YERPE -            477  9.1e-112  372.8   2.0   1   1  2.5e-115  9.1e-112  372.8   2.0     1   303   146   447   146   449 0.99 RmuC family
DUF4279              PF14106.1    118 sp|Q8ZAL8|RMUC_YERPE -            477      0.25   11.2   2.2   2   2   0.00012      0.44   10.4   0.0    37    83   366   411   355   427 0.88 Domain of unknown function (DUF4279)
RNB                  PF00773.14   325 sp|Q8ZED8|RNB_YERPE  -            644   2.7e-83  279.9   0.0   1   1   6.9e-87   3.4e-83  279.6   0.0     1   324   189   516   189   517 0.95 RNB domain
OB_RNB               PF08206.6     58 sp|Q8ZED8|RNB_YERPE  -            644   4.7e-19   67.6   0.1   1   1   2.9e-22   1.4e-18   66.0   0.1     1    57    24    80    24    81 0.96 Ribonuclease B OB domain
S1                   PF00575.18    74 sp|Q8ZED8|RNB_YERPE  -            644   1.7e-13   50.4   0.9   2   2   1.1e-13   5.2e-10   39.2   0.2     5    70   561   639   557   640 0.95 S1 RNA binding domain
RNase_HII            PF01351.13   198 sp|Q8ZH54|RNH2_YERPE -            198     3e-55  186.9   0.0   1   1   2.3e-59   3.4e-55  186.7   0.0     1   197    14   190    14   191 0.99 Ribonuclease HII
RNase_H              PF00075.19   132 sp|Q8ZH30|RNH_YERPE  -            154   3.7e-40  137.3   0.0   1   1   2.8e-44   4.2e-40  137.1   0.0     2   131     3   141     2   142 0.91 RNase H
Ribonuclease_P       PF00825.13   111 sp|Q8Z9U4|RNPA_YERPE -            119   1.4e-31  108.6   0.2   1   1   1.1e-35   1.6e-31  108.5   0.2     1   109     6   111     6   113 0.99 Ribonuclease P
RNase_PH             PF01138.16   132 sp|Q8ZJP8|RNPH_YERPE -            238   6.4e-27   94.4   0.0   1   1   1.4e-30     1e-26   93.8   0.0     1   129    10   140    10   142 0.93 3' exoribonuclease family, domain 1
RNase_PH_C           PF03725.10    68 sp|Q8ZJP8|RNPH_YERPE -            238   1.2e-10   41.1   0.7   1   1   2.7e-14     2e-10   40.4   0.7     1    66   157   222   157   224 0.92 3' exoribonuclease family, domain 2
RNase_T              PF00929.19   164 sp|Q8ZE08|RNT_YERPE  -            215   8.1e-35  120.5   0.0   1   1   1.3e-38   9.3e-35  120.3   0.0     1   164    20   194    20   194 0.97 Exonuclease
ABC_sub_bind         PF04392.7    294 sp|Q8ZE08|RNT_YERPE  -            215     0.029   13.3   0.0   1   1   6.1e-06     0.045   12.6   0.0     8    52    91   133    89   143 0.84 ABC transporter substrate binding protein
DUF4115              PF13464.1     77 sp|Q7CJM7|RODZ_YERPE -            345   2.3e-22   78.4   0.0   1   1   2.9e-25   5.5e-22   77.2   0.0     1    76   268   342   268   343 0.97 Domain of unknown function (DUF4115)
HTH_25               PF13413.1     62 sp|Q7CJM7|RODZ_YERPE -            345   2.8e-17   62.0   0.3   1   1   2.2e-20   4.1e-17   61.5   0.3     1    62    18    79    18    79 0.98 Helix-turn-helix domain
HTH_19               PF12844.2     64 sp|Q7CJM7|RODZ_YERPE -            345   1.6e-09   37.6   0.5   1   1   1.3e-12   2.4e-09   37.0   0.0     3    59    18    80    16    85 0.85 Helix-turn-helix domain
HTH_31               PF13560.1     64 sp|Q7CJM7|RODZ_YERPE -            345   1.2e-08   34.9   0.2   1   1   1.8e-11   3.4e-08   33.5   0.2     3    61    16    79    16    81 0.86 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|Q7CJM7|RODZ_YERPE -            345     5e-07   29.4   0.1   1   1   6.4e-10   1.2e-06   28.2   0.1     1    32    19    50    19    57 0.92 Helix-turn-helix
Sigma70_r4           PF04545.11    50 sp|Q7CJM7|RODZ_YERPE -            345     0.042   13.1   0.5   1   1   5.4e-05       0.1   11.9   0.2    20    41    27    48    17    50 0.86 Sigma-70, region 4
DUF3301              PF11743.3     97 sp|Q7CJM7|RODZ_YERPE -            345     0.081   12.4   0.6   1   1   8.3e-05      0.15   11.5   0.6     2    27   119   146   118   156 0.72 Protein of unknown function (DUF3301)
TFIIA                PF03153.8    375 sp|Q7CJM7|RODZ_YERPE -            345      0.44   10.3   3.7   1   1   0.00033      0.62    9.9   3.7    79   181   142   248    80   276 0.61 Transcription factor IIA, alpha/beta subunit
Rib_5-P_isom_A       PF06026.9    173 sp|Q8ZHH8|RPIA1_YERPE -            218     7e-63  211.0   0.6   1   1   2.3e-66   8.6e-63  210.7   0.6     3   173    49   215    47   215 0.98 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
DeoRC                PF00455.17   162 sp|Q8ZHH8|RPIA1_YERPE -            218   8.9e-05   22.1   0.5   1   2   2.5e-07   0.00092   18.8   0.0     3    42     3    42     1    58 0.91 DeoR C terminal sensor domain
RNase_PH_C           PF03725.10    68 sp|Q8ZHH8|RPIA1_YERPE -            218      0.02   14.8   1.0   1   2   1.4e-05     0.052   13.4   0.0    30    63    75   110    68   111 0.84 3' exoribonuclease family, domain 2
DUF1193              PF06702.7    221 sp|Q8ZHH8|RPIA1_YERPE -            218      0.12   11.8   0.0   1   1   6.5e-05      0.24   10.7   0.0    54   100   137   179   126   190 0.91 Protein of unknown function (DUF1193)
Rib_5-P_isom_A       PF06026.9    173 sp|Q8ZGJ9|RPIA2_YERPE -            236   6.6e-63  211.1   0.0   1   1   1.1e-66     8e-63  210.8   0.0     2   172    53   230    52   231 0.94 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
DeoRC                PF00455.17   162 sp|Q8ZGJ9|RPIA2_YERPE -            236   0.00012   21.8   0.0   1   2   1.3e-07   0.00097   18.8   0.0     2    54     4    61     3    72 0.82 DeoR C terminal sensor domain
RNA_pol_A_CTD        PF03118.10    67 sp|Q8ZJ87|RPOA_YERPE -            329   1.2e-25   88.7   0.1   1   1   5.7e-29   2.1e-25   87.8   0.1     2    66   244   308   243   309 0.95 Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_A_bac        PF01000.21   112 sp|Q8ZJ87|RPOA_YERPE -            329   5.1e-24   84.5   0.3   1   1   3.1e-27   1.1e-23   83.4   0.1     2   110    60   156    58   186 0.90 RNA polymerase Rpb3/RpoA insert domain
RNA_pol_L            PF01193.19    66 sp|Q8ZJ87|RPOA_YERPE -            329   1.4e-22   78.5   0.0   1   1   6.4e-26   2.4e-22   77.8   0.0     1    65    28   228    28   229 0.97 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2          PF13656.1     77 sp|Q8ZJ87|RPOA_YERPE -            329   1.4e-05   24.4   0.1   1   3    0.0001      0.37   10.2   0.0    11    34    36    60    33    70 0.79 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2          PF13656.1     77 sp|Q8ZJ87|RPOA_YERPE -            329   1.4e-05   24.4   0.1   3   3   7.9e-05      0.29   10.5   0.0    28    73   187   231   184   234 0.83 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_Rpb2_6       PF00562.23   386 sp|Q8ZAP5|RPOB_YERPE -           1342  1.9e-162  540.3   0.2   1   2   0.00047      0.78    8.4   0.0     2    33   663   694   662   700 0.88 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_6       PF00562.23   386 sp|Q8ZAP5|RPOB_YERPE -           1342  1.9e-162  540.3   0.2   2   2  2.2e-162  3.7e-159  529.6   0.3     3   386   717  1264   715  1264 0.99 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7       PF04560.15    82 sp|Q8ZAP5|RPOB_YERPE -           1342   2.3e-32  111.0   0.1   1   1   9.3e-35   1.5e-31  108.4   0.1     1    81  1266  1341  1266  1342 0.98 RNA polymerase Rpb2, domain 7
RNA_pol_Rpb2_3       PF04565.11    68 sp|Q8ZAP5|RPOB_YERPE -           1342   6.1e-30  102.7   0.0   1   1   1.1e-32   1.8e-29  101.2   0.0     1    68   513   582   513   582 0.98 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_45      PF10385.4     66 sp|Q8ZAP5|RPOB_YERPE -           1342     5e-28   96.6   0.3   1   1   1.9e-30   3.2e-27   94.1   0.1     1    66   591   656   591   656 1.00 RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_2       PF04561.9    190 sp|Q8ZAP5|RPOB_YERPE -           1342   5.5e-27   94.4   0.9   1   3   7.6e-11   1.3e-07   31.2   0.0     1    93   151   239   151   291 0.68 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_2       PF04561.9    190 sp|Q8ZAP5|RPOB_YERPE -           1342   5.5e-27   94.4   0.9   2   3   1.9e-19   3.1e-16   59.3   0.1    81   190   341   454   322   454 0.89 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_1       PF04563.10   203 sp|Q8ZAP5|RPOB_YERPE -           1342   1.7e-26   92.4   0.0   1   1   2.1e-29   3.5e-26   91.3   0.0     2   203    27   509    26   509 0.98 RNA polymerase beta subunit
RelB                 PF04221.7     83 sp|Q8ZAP5|RPOB_YERPE -           1342     0.062   13.0   0.1   1   1   0.00021      0.35   10.6   0.0     6    39   196   229   192   237 0.93 RelB antitoxin
Cas_Cas2CT1978       PF09707.5     86 sp|Q8ZAP5|RPOB_YERPE -           1342       0.1   12.5   0.0   1   1   0.00021      0.34   10.8   0.0     6    44   239   276   237   287 0.78 CRISPR-associated protein (Cas_Cas2CT1978)
DUF4140              PF13600.1    104 sp|Q8ZAP5|RPOB_YERPE -           1342      0.85   10.1   4.9   1   1   0.00012       0.2   12.1   0.2    11    90   887   968   884   973 0.80 N-terminal domain of unknown function (DUF4140)
RNA_pol_Rpb1_1       PF04997.7    337 sp|Q8D1H3|RPOC_YERPE -           1406   1.1e-99  333.9   0.0   1   1  8.1e-103   2.4e-99  332.7   0.0     2   337    15   342    14   342 0.95 RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_5       PF04998.12   277 sp|Q8D1H3|RPOC_YERPE -           1406   3.3e-80  269.3   0.0   1   1   2.3e-83   6.7e-80  268.2   0.0     1   276   766  1321   766  1322 1.00 RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_2       PF00623.15   166 sp|Q8D1H3|RPOC_YERPE -           1406   4.2e-51  173.1   0.0   1   1   3.4e-53     1e-49  168.6   0.0     1   166   344   486   344   486 0.95 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3       PF04983.13   158 sp|Q8D1H3|RPOC_YERPE -           1406   2.6e-27   95.4   0.0   1   1     2e-30   5.9e-27   94.3   0.0     1   158   489   644   489   644 0.94 RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4       PF05000.12   108 sp|Q8D1H3|RPOC_YERPE -           1406   5.8e-19   67.8   0.1   1   1   4.6e-22   1.4e-18   66.6   0.1     2   107   674   763   673   764 0.85 RNA polymerase Rpb1, domain 4
RNA_pol_Rpb6         PF01192.17    57 sp|Q8ZJQ3|RPOZ_YERPE -             91   1.9e-17   62.7   0.2   1   1   1.7e-21   2.5e-17   62.3   0.2     1    56     7    62     7    63 0.95 RNA polymerase Rpb6
NUDIX                PF00293.23   135 sp|Q8ZHU8|RPPH_YERPE -            175   3.4e-25   88.2   0.1   1   1   5.4e-29     4e-25   88.0   0.1     1   134     7   149     7   150 0.96 NUDIX domain
NUDIX_4              PF14815.1    114 sp|Q8ZHU8|RPPH_YERPE -            175    0.0048   16.3   0.1   1   1   1.1e-06    0.0081   15.5   0.1     2    57    13    65    12   129 0.90 NUDIX domain
Methyltransf_6       PF03737.10   154 sp|Q8ZJJ7|RRAA_YERPE -            161   3.7e-54  182.7   0.2   1   1   2.8e-58   4.1e-54  182.6   0.2     1   153     1   152     1   153 0.99 Demethylmenaquinone methyltransferase
RRF                  PF01765.14   165 sp|Q8ZH63|RRF_YERPE  -            185   8.5e-68  226.9   1.9   1   1   2.5e-71   1.2e-67  226.4   1.9     1   165    19   183    19   183 0.99 Ribosome recycling factor
DUF2525              PF10733.4     58 sp|Q8ZH63|RRF_YERPE  -            185     0.016   15.0   2.4   2   2   3.8e-06     0.019   14.8   0.5     4    26   141   162   138   172 0.81 Protein of unknown function (DUF2525)
TPP1                 PF10341.4    106 sp|Q8ZH63|RRF_YERPE  -            185     0.033   14.1   0.2   1   1   1.3e-05     0.066   13.2   0.2    16    84    87   169    11   183 0.81 Shelterin complex subunit, TPP1/ACD
Ribosomal_S10        PF00338.17    97 sp|P67906|RS10_YERPE -            103   1.8e-39  133.4   0.1   1   1   1.4e-43     2e-39  133.3   0.1     1    96     6   101     6   102 0.99 Ribosomal protein S10p/S20e
Ribosomal_S11        PF00411.14   110 sp|Q8ZJ89|RS11_YERPE -            129   4.5e-50  168.4   0.2   1   1   3.7e-54   5.4e-50  168.1   0.2     1   110    19   128    19   128 0.99 Ribosomal protein S11
Ribosom_S12_S23      PF00164.20   122 sp|Q8ZJB5|RS12_YERPE -            124   2.4e-56  188.4   1.7   1   1   1.8e-60   2.7e-56  188.2   1.7     2   122     3   123     2   123 0.99 Ribosomal protein S12/S23
Ribosomal_S13        PF00416.17   107 sp|Q8ZJ90|RS13_YERPE -            118   6.7e-39  132.6   1.2   1   1     1e-42   7.5e-39  132.4   1.2     1   107     3   108     3   108 0.99 Ribosomal protein S13/S18
FbpA                 PF05833.6    455 sp|Q8ZJ90|RS13_YERPE -            118   0.00026   19.6   0.0   1   1   4.1e-08    0.0003   19.4   0.0   191   239    17    64     4    81 0.84 Fibronectin-binding protein A N-terminus (FbpA)
Ribosomal_S14        PF00253.16    55 sp|Q8ZJ99|RS14_YERPE -            101   1.6e-24   85.0   0.6   1   1   1.6e-28   2.3e-24   84.5   0.6     1    55    46   100    46   100 0.98 Ribosomal protein S14p/S29e
Ribosomal_S15        PF00312.17    83 sp|Q8ZBC5|RS15_YERPE -             89   4.6e-32  109.6   0.4   1   1   3.5e-36   5.1e-32  109.4   0.4     2    83     7    88     6    88 0.98 Ribosomal protein S15
Ribosomal_S16        PF00886.14    62 sp|Q8ZBU7|RS16_YERPE -             82   5.9e-26   89.9   0.0   1   1   4.8e-30   7.1e-26   89.7   0.0     1    62     8    68     8    68 0.95 Ribosomal protein S16
Ribosomal_S17        PF00366.15    69 sp|Q8ZJA3|RS17_YERPE -             84   1.2e-31  108.4   1.7   1   1   1.9e-35   1.4e-31  108.2   1.7     1    69    10    78    10    78 0.99 Ribosomal protein S17
KapB                 PF08810.5    113 sp|Q8ZJA3|RS17_YERPE -             84     0.061   13.3   0.1   1   1   1.1e-05     0.084   12.9   0.1    10    34    13    37     7    51 0.81 Kinase associated protein B
Ribosomal_S18        PF01084.15    54 sp|Q8ZB83|RS18_YERPE -             75     2e-24   85.1   0.2   1   1   3.4e-28   2.5e-24   84.8   0.2     3    54    17    68    15    68 0.96 Ribosomal protein S18
MerR_1               PF13411.1     69 sp|Q8ZB83|RS18_YERPE -             75     0.025   14.3   0.1   1   1   4.5e-06     0.033   13.9   0.1    15    52    27    65    16    71 0.91 MerR HTH family regulatory protein
Ribosomal_S19        PF00203.16    81 sp|Q8ZJA8|RS19_YERPE -             92   3.4e-38  129.1   0.1   1   1   2.6e-42   3.9e-38  128.9   0.1     1    81     3    83     3    83 0.99 Ribosomal protein S19
Ribosomal_S20p       PF01649.13    84 sp|Q8ZIM3|RS20_YERPE -             87   2.5e-32  111.1  13.1   1   1   1.8e-36   2.7e-32  110.9  13.1     1    83     2    84     2    85 0.99 Ribosomal protein S20
Ribosomal_S21        PF01165.15    57 sp|P68686|RS21_YERPE -             71   3.5e-24   84.0   8.1   1   2   2.3e-28   3.5e-24   84.0   8.1     2    57     3    58     2    59 0.97 Ribosomal protein S21
Ribosomal_S2         PF00318.15   211 sp|Q8ZH66|RS2_YERPE  -            241   2.5e-85  284.9   0.0   1   1   5.8e-89   2.9e-85  284.7   0.0     1   211     9   225     9   225 0.99 Ribosomal protein S2
DUF3189              PF11385.3    148 sp|Q8ZH66|RS2_YERPE  -            241      0.04   13.4   0.1   1   2   5.6e-05      0.28   10.7   0.0    61   107    35    80    33   117 0.83 Protein of unknown function (DUF3189)
Rho_Binding          PF08912.6     69 sp|Q8ZH66|RS2_YERPE  -            241     0.062   13.6   0.9   1   1   2.4e-05      0.12   12.7   0.9    19    61   104   144    99   146 0.93 Rho Binding
Ribosomal_S3_C       PF00189.15    85 sp|Q8ZJA6|RS3_YERPE  -            232   3.8e-35  119.9   0.3   2   2   4.3e-38   1.3e-34  118.2   0.1     1    85   119   202   119   202 0.96 Ribosomal protein S3, C-terminal domain
KH_2                 PF07650.12    78 sp|Q8ZJA6|RS3_YERPE  -            232   8.6e-20   70.0   3.2   1   1   5.9e-23   1.7e-19   69.0   3.2     1    78    38   111    38   111 0.97 KH domain
KH_4                 PF13083.1     73 sp|Q8ZJA6|RS3_YERPE  -            232    0.0003   20.3   0.1   1   1   2.4e-07   0.00071   19.1   0.1     6    58    41    91    36    98 0.75 KH domain
MRP-S24              PF14955.1    136 sp|Q8ZJA6|RS3_YERPE  -            232    0.0079   16.0   0.1   1   1   4.5e-06     0.013   15.3   0.1    29    88    12    68     3    76 0.84 Mitochondrial ribosome subunit S24
KH_1                 PF00013.24    60 sp|Q8ZJA6|RS3_YERPE  -            232     0.041   13.5   0.7   1   1   4.8e-05      0.14   11.8   0.7     2    27    64    89    63    91 0.91 KH domain
Ribosomal_S4         PF00163.14    94 sp|Q8ZJ88|RS4_YERPE  -            206   6.1e-28   97.0   1.4   1   1   1.6e-31   6.1e-28   97.0   1.4     1    94     2    95     2    95 0.97 Ribosomal protein S4/S9 N-terminal domain
S4                   PF01479.20    48 sp|Q8ZJ88|RS4_YERPE  -            206   7.7e-19   66.8   0.2   1   1   3.9e-22   1.5e-18   65.9   0.2     2    48    97   143    96   143 0.99 S4 domain
S4_2                 PF13275.1     65 sp|Q8ZJ88|RS4_YERPE  -            206     0.025   14.1   0.1   1   1   1.3e-05     0.049   13.2   0.1    24    60   112   148   105   156 0.87 S4 domain
E1_dh                PF00676.15   300 sp|Q8ZJ88|RS4_YERPE  -            206     0.081   11.6   0.1   1   1   3.2e-05      0.12   11.0   0.1   164   228   108   179   101   183 0.75 Dehydrogenase E1 component
Ribosomal_S5_C       PF03719.10    74 sp|Q8ZJ95|RS5_YERPE  -            167   1.5e-31  107.4   1.9   1   1   3.4e-35   2.5e-31  106.7   1.9     1    74    85   158    85   158 0.99 Ribosomal protein S5, C-terminal domain
Ribosomal_S5         PF00333.15    67 sp|Q8ZJ95|RS5_YERPE  -            167   6.5e-31  105.8   2.0   1   1   1.7e-34   1.3e-30  104.9   2.0     1    66    10    75    10    76 0.98 Ribosomal protein S5, N-terminal domain
Ribosomal_S6         PF01250.12    92 sp|Q8ZB81|RS6_YERPE  -            130   9.3e-34  115.1   0.0   1   1   1.7e-37   1.3e-33  114.7   0.0     1    91     2    91     2    92 0.98 Ribosomal protein S6
DUF2313              PF10076.4    179 sp|Q8ZB81|RS6_YERPE  -            130     0.034   13.5   0.0   1   2   3.8e-05      0.28   10.5   0.0   127   177    24    63     5    65 0.78 Uncharacterized protein conserved in bacteria (DUF2313)
Ribosomal_S7         PF00177.16   148 sp|Q8ZJB4|RS7_YERPE  -            156   1.6e-62  209.4   0.5   1   1   1.2e-66   1.8e-62  209.2   0.5     1   148     1   149     1   149 0.99 Ribosomal protein S7p/S5e
Ribosomal_S8         PF00410.14   129 sp|Q8ZJ98|RS8_YERPE  -            130   1.4e-47  160.7   0.0   1   1   1.1e-51   1.6e-47  160.5   0.0     1   128     5   129     5   130 0.97 Ribosomal protein S8
Ribosomal_S9         PF00380.14   121 sp|Q8ZB62|RS9_YERPE  -            130   4.6e-47  159.2   1.0   1   1   3.5e-51   5.1e-47  159.0   1.0     1   121    10   130    10   130 1.00 Ribosomal protein S9/S16
Rsd_AlgQ             PF04353.8    153 sp|Q7CKT7|RSD_YERPE  -            169   1.1e-53  181.0   0.1   1   1   1.7e-57   1.2e-53  180.8   0.1     1   152     1   152     1   153 0.98 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
DDT                  PF02791.12    61 sp|Q7CKT7|RSD_YERPE  -            169     0.023   14.4   0.0   1   2   2.2e-05      0.16   11.7   0.0    13    42    29    68    27    81 0.89 DDT domain
Peptidase_M50        PF02163.17   192 sp|Q8ZH59|RSEP_YERPE -            451   1.2e-70  236.4   0.2   1   1   5.4e-74   1.3e-70  236.2   0.2     1   192    10   447    10   447 1.00 Peptidase family M50
PDZ                  PF00595.19    81 sp|Q8ZH59|RSEP_YERPE -            451   4.9e-10   39.4   1.5   2   2   7.4e-12   1.8e-08   34.4   0.1    18    80   219   276   203   277 0.78 PDZ domain (Also known as DHR or GLGF)
PDZ_2                PF13180.1     82 sp|Q8ZH59|RSEP_YERPE -            451   4.3e-09   36.1   0.1   2   2   4.1e-10     1e-06   28.5   0.0    18    78   226   285   209   287 0.87 PDZ domain
Peptidase_M50B       PF13398.1    200 sp|Q8ZH59|RSEP_YERPE -            451     0.076   12.3   0.2   1   3   3.1e-05     0.076   12.3   0.2    22    49    16    43     1    71 0.71 Peptidase M50B-like
DUF3394              PF11874.3    183 sp|Q8ZH59|RSEP_YERPE -            451      0.13   11.8   0.0   1   1   0.00011      0.27   10.7   0.0    88   158   187   259   174   264 0.84 Domain of unknown function (DUF3394)
DUF258               PF03193.11   161 sp|Q8ZIX0|RSGA_YERPE -            350   6.5e-56  187.9   0.0   1   1   6.6e-59   9.7e-56  187.3   0.0     4   161   175   334   172   334 0.96 Protein of unknown function, DUF258
MMR_HSR1             PF01926.18   116 sp|Q8ZIX0|RSGA_YERPE -            350   1.5e-05   24.9   0.0   1   1   2.1e-08   3.1e-05   23.8   0.0     3    59   210   272   209   340 0.72 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|Q8ZIX0|RSGA_YERPE -            350   0.00032   20.0   0.2   1   2   0.00016      0.23   10.7   0.1   103   154   149   202   120   204 0.80 Ferrous iron transport protein B
AAA_29               PF13555.1     62 sp|Q8ZIX0|RSGA_YERPE -            350   0.00091   18.7   0.6   1   1   1.6e-06    0.0024   17.3   0.1    15    43   198   226   192   232 0.85 P-loop containing region of AAA domain
GTP_EFTU             PF00009.22   188 sp|Q8ZIX0|RSGA_YERPE -            350    0.0029   17.0   0.1   1   2   2.6e-05     0.039   13.3   0.0   113   183   142   205   119   210 0.80 Elongation factor Tu GTP binding domain
AAA_16               PF13191.1    185 sp|Q8ZIX0|RSGA_YERPE -            350    0.0073   16.3   0.2   1   1   1.3e-05     0.019   14.9   0.0    21    49   203   231   191   258 0.81 AAA ATPase domain
ABC_tran             PF00005.22   137 sp|Q8ZIX0|RSGA_YERPE -            350    0.0098   16.1   1.3   2   2   6.3e-05     0.094   13.0   0.1    11    33   206   228   202   261 0.83 ABC transporter
AAA_22               PF13401.1    131 sp|Q8ZIX0|RSGA_YERPE -            350     0.087   12.9   0.2   1   1   0.00029      0.43   10.7   0.0     4    30   206   232   200   258 0.82 AAA domain
RrnaAD               PF00398.15   262 sp|Q8ZIK5|RSMA_YERPE -            272   7.8e-71  238.1   0.0   1   1     3e-74   8.9e-71  237.9   0.0     4   260    11   264     8   266 0.97 Ribosomal RNA adenine dimethylase
Methyltransf_26      PF13659.1    117 sp|Q8ZIK5|RSMA_YERPE -            272   4.6e-05   23.4   0.0   1   1   2.1e-08   6.2e-05   23.0   0.0     2    82    39   118    38   233 0.80 Methyltransferase domain
NodS                 PF05401.6    201 sp|Q8ZIK5|RSMA_YERPE -            272     0.017   14.5   0.0   1   3   6.2e-05      0.18   11.1   0.0    47   102    41    96    26   103 0.83 Nodulation protein S (NodS)
Methyltransf_18      PF12847.2    112 sp|Q8ZIK5|RSMA_YERPE -            272     0.034   14.7   0.0   1   1   1.8e-05     0.052   14.1   0.0     1    70    37   102    37   152 0.79 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZIK5|RSMA_YERPE -            272     0.053   12.9   0.0   1   1   2.5e-05     0.073   12.4   0.0    25    79    31    85    24   165 0.81 Methyltransferase small domain
Nol1_Nop2_Fmu        PF01189.12   283 sp|Q8ZJ81|RSMB_YERPE -            429   9.6e-92  307.3   0.0   1   1   1.7e-94   1.4e-91  306.8   0.0     1   282   164   426   164   427 0.99 NOL1/NOP2/sun family
NusB                 PF01029.13   134 sp|Q8ZJ81|RSMB_YERPE -            429   8.3e-25   87.3   0.0   1   1   2.5e-27     2e-24   86.0   0.0     2   134     6   127     5   127 0.98 NusB family
Methyltransf_26      PF13659.1    117 sp|Q8ZJ81|RSMB_YERPE -            429   9.6e-14   51.4   0.0   1   1   2.4e-16   1.9e-13   50.4   0.0     2   116   248   375   247   376 0.90 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZJ81|RSMB_YERPE -            429   4.1e-11   42.6   0.0   1   1     1e-13   8.6e-11   41.6   0.0     2   122   245   387   244   414 0.83 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZJ81|RSMB_YERPE -            429   2.4e-10   41.0   0.1   1   1   5.8e-13   4.8e-10   40.0   0.1     2   112   247   375   246   375 0.85 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZJ81|RSMB_YERPE -            429   2.2e-07   30.4   0.0   1   1   4.6e-10   3.8e-07   29.6   0.0    23   146   238   380   229   399 0.83 Methyltransferase small domain
Methyltransf_5       PF01795.14   310 sp|Q8ZJ81|RSMB_YERPE -            429   1.5e-05   24.4   0.0   1   1   3.3e-08   2.7e-05   23.6   0.0    10   100   236   322   231   330 0.87 MraW methylase family
FtsJ                 PF01728.14   181 sp|Q8ZJ81|RSMB_YERPE -            429   2.3e-05   24.4   0.0   1   1     5e-08   4.1e-05   23.6   0.0    17    72   240   290   231   395 0.70 FtsJ-like methyltransferase
Methyltransf_24      PF13578.1    106 sp|Q8ZJ81|RSMB_YERPE -            429   8.3e-05   23.3   0.1   1   1   4.1e-06    0.0034   18.1   0.1     8   102   258   371   254   373 0.74 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|Q8ZJ81|RSMB_YERPE -            429   0.00013   21.3   0.0   1   1   2.9e-07   0.00024   20.5   0.0    39   129   245   330   236   359 0.77 Conserved hypothetical protein 95
Methyltransf_11      PF08241.7     95 sp|Q8ZJ81|RSMB_YERPE -            429   0.00094   19.6   0.0   1   1   3.6e-06    0.0029   18.0   0.0     3    65   253   320   251   327 0.80 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q8ZJ81|RSMB_YERPE -            429   0.00094   19.5   0.0   1   1   2.8e-06    0.0023   18.2   0.0     1    71   250   319   250   363 0.79 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|Q8ZJ81|RSMB_YERPE -            429    0.0028   16.7   0.0   1   1   5.5e-06    0.0045   16.0   0.0    19    73   235   291   229   302 0.87 Ribosomal RNA adenine dimethylase
Methyltransf_12      PF08242.7     99 sp|Q8ZJ81|RSMB_YERPE -            429     0.032   14.7   0.0   1   1   0.00011     0.088   13.2   0.0     1    70   251   319   251   340 0.74 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q8ZJ81|RSMB_YERPE -            429     0.059   12.9   0.0   1   1   0.00016      0.13   11.7   0.0     3    46   249   294   247   311 0.85 RNA cap guanine-N2 methyltransferase
Ubie_methyltran      PF01209.13   233 sp|Q8ZJ81|RSMB_YERPE -            429     0.061   12.4   0.0   1   1   0.00012       0.1   11.7   0.0    42    98   241   296   234   321 0.81 ubiE/COQ5 methyltransferase family
Met_10               PF02475.11   200 sp|Q8ZJ81|RSMB_YERPE -            429     0.076   12.6   0.0   1   1   0.00016      0.13   11.7   0.0   100   185   245   331   241   372 0.82 Met-10+ like-protein
MTS_N                PF08468.6    155 sp|Q7CG56|RSMC_YERPE -            347   1.7e-60  203.3   0.0   1   1   3.9e-63   2.6e-60  202.7   0.0     1   155     8   162     8   162 1.00 Methyltransferase small domain N-terminal
MTS                  PF05175.9    170 sp|Q7CG56|RSMC_YERPE -            347   3.2e-57  192.6   0.0   1   1     8e-60   5.4e-57  191.8   0.0     2   170   167   333   166   333 0.99 Methyltransferase small domain
Methyltransf_31      PF13847.1    152 sp|Q7CG56|RSMC_YERPE -            347   1.6e-10   40.7   0.0   1   1   4.7e-13   3.2e-10   39.8   0.0     6   109   199   302   197   333 0.87 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q7CG56|RSMC_YERPE -            347   6.8e-09   35.7   0.0   1   1   1.9e-11   1.3e-08   34.8   0.0     3   110   199   298   197   330 0.81 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q7CG56|RSMC_YERPE -            347   3.1e-07   30.9   0.1   1   1   4.7e-09   3.1e-06   27.7   0.0     3   109   198   301   197   304 0.75 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q7CG56|RSMC_YERPE -            347   6.6e-07   29.7   0.0   1   1   2.8e-09   1.9e-06   28.2   0.0     1    72   201   267   201   299 0.72 Methyltransferase domain
PrmA                 PF06325.8    295 sp|Q7CG56|RSMC_YERPE -            347   7.7e-07   28.5   0.1   1   1     2e-09   1.3e-06   27.7   0.1   163   232   197   268   184   269 0.82 Ribosomal protein L11 methyltransferase (PrmA)
FmrO                 PF07091.6    251 sp|Q7CG56|RSMC_YERPE -            347   2.9e-05   23.1   0.0   1   1   6.7e-08   4.5e-05   22.5   0.0   107   168   198   259   188   263 0.93 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_11      PF08241.7     95 sp|Q7CG56|RSMC_YERPE -            347   3.2e-05   24.3   0.0   1   1   1.2e-07   8.1e-05   23.0   0.0     1    72   201   273   201   301 0.76 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q7CG56|RSMC_YERPE -            347   8.4e-05   22.8   0.0   1   1   3.2e-07   0.00022   21.5   0.0     1    73   200   267   200   297 0.71 Methyltransferase domain
DUF938               PF06080.7    204 sp|Q7CG56|RSMC_YERPE -            347    0.0002   20.9   0.0   1   1   5.8e-07   0.00039   20.0   0.0    18    81   188   249   181   299 0.80 Protein of unknown function (DUF938)
Methyltransf_23      PF13489.1    161 sp|Q7CG56|RSMC_YERPE -            347   0.00021   21.0   0.0   1   1   6.5e-07   0.00044   20.0   0.0    22    83   196   266   177   328 0.77 Methyltransferase domain
Methyltransf_10      PF05971.7    299 sp|Q7CG56|RSMC_YERPE -            347   0.00042   19.5   0.0   1   1   1.1e-06   0.00075   18.7   0.0   102   193   196   277   178   292 0.82 Protein of unknown function (DUF890)
NodS                 PF05401.6    201 sp|Q7CG56|RSMC_YERPE -            347    0.0026   17.1   0.0   2   2   2.4e-05     0.016   14.5   0.0    44   110   197   265   183   269 0.68 Nodulation protein S (NodS)
GidB                 PF02527.10   184 sp|Q7CG56|RSMC_YERPE -            347    0.0071   15.5   0.0   1   1   1.8e-05     0.012   14.7   0.0    24    85   169   233   162   268 0.66 rRNA small subunit methyltransferase G
Methyltransf_2       PF00891.13   242 sp|Q7CG56|RSMC_YERPE -            347     0.019   14.1   0.0   1   1   5.2e-05     0.035   13.2   0.0   104   142   199   237   190   254 0.87 O-methyltransferase
CMAS                 PF02353.15   273 sp|Q7CG56|RSMC_YERPE -            347     0.028   13.5   0.0   1   1   7.7e-05     0.052   12.6   0.0    65   133   199   267   196   274 0.78 Mycolic acid cyclopropane synthetase
Methyltransf_16      PF10294.4    174 sp|Q7CG56|RSMC_YERPE -            347     0.035   13.5   0.0   1   1    0.0001     0.068   12.6   0.0    47   102   197   251   179   259 0.85 Putative methyltransferase
Methyltransf_32      PF13679.1    141 sp|Q7CG56|RSMC_YERPE -            347     0.043   13.5   0.0   1   1   0.00013     0.087   12.5   0.0    28    77   199   251   186   285 0.74 Methyltransferase domain
TehB                 PF03848.9    192 sp|Q7CG56|RSMC_YERPE -            347     0.053   12.6   0.0   1   1   0.00013     0.085   12.0   0.0    32   149   198   318   190   335 0.74 Tellurite resistance protein TehB
Methyltransf_4       PF02390.12   197 sp|Q7CG56|RSMC_YERPE -            347      0.06   12.3   0.0   1   1   0.00014     0.097   11.7   0.0    19    47   195   224   171   255 0.76 Putative methyltransferase
MetW                 PF07021.7    193 sp|Q7CG56|RSMC_YERPE -            347     0.081   12.2   0.0   1   1    0.0002      0.14   11.5   0.0    15    35   198   218   191   286 0.70 Methionine biosynthesis protein MetW
GidB                 PF02527.10   184 sp|Q8Z9R9|RSMG_YERPE -            206   2.6e-60  202.7   0.0   1   1   8.8e-64   3.3e-60  202.3   0.0     1   183    20   200    20   201 0.97 rRNA small subunit methyltransferase G
Methyltransf_31      PF13847.1    152 sp|Q8Z9R9|RSMG_YERPE -            206   2.7e-09   36.7   0.0   1   1   9.6e-13   3.6e-09   36.3   0.0     3   104    65   160    63   193 0.82 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8Z9R9|RSMG_YERPE -            206   8.1e-05   23.1   0.0   1   1   3.3e-08   0.00012   22.6   0.0     2   107    66   162    65   166 0.82 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8Z9R9|RSMG_YERPE -            206    0.0027   17.0   0.0   1   1   1.2e-06    0.0046   16.3   0.0    30   104    62   138    45   140 0.87 Methyltransferase small domain
Methyltransf_5       PF01795.14   310 sp|Q8ZIF7|RSMH_YERPE -            320  1.5e-117  392.3   0.0   1   1  7.9e-121  1.7e-117  392.1   0.0     2   309    12   317    11   318 0.96 MraW methylase family
Methyltransf_18      PF12847.2    112 sp|Q8ZIF7|RSMH_YERPE -            320   1.8e-05   25.3   0.1   1   2   1.7e-06    0.0036   17.8   0.0    13    78    42   109    33   145 0.73 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZIF7|RSMH_YERPE -            320   1.8e-05   24.3   0.0   1   2   5.1e-07    0.0011   18.5   0.0    13    48    40    75    28   102 0.85 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZIF7|RSMH_YERPE -            320   3.5e-05   23.8   0.0   1   1   9.9e-08   0.00021   21.3   0.0     5   115    35   247    32   249 0.66 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q8ZIF7|RSMH_YERPE -            320    0.0029   18.0   0.0   1   2   0.00033      0.69   10.4   0.0     5    54    39    89    35   100 0.78 Methyltransferase domain
Methyltransf_24      PF13578.1    106 sp|Q8ZIF7|RSMH_YERPE -            320     0.004   17.9   0.0   1   2   1.2e-05     0.025   15.3   0.0     4    86    40   117    38   131 0.77 Methyltransferase domain
SAM_MT               PF04445.8    235 sp|Q8ZA46|RSMJ_YERPE -            256  1.9e-111  370.8   0.1   1   1  4.4e-115  2.2e-111  370.6   0.1     4   233    20   249    17   251 0.98 Putative SAM-dependent methyltransferase
Methyltransf_26      PF13659.1    117 sp|Q8ZA46|RSMJ_YERPE -            256   0.00032   20.6   0.8   1   1   1.3e-07   0.00064   19.7   0.8     2    88    93   185    92   242 0.76 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZA46|RSMJ_YERPE -            256     0.081   13.5   0.0   1   1   3.5e-05      0.17   12.4   0.0     3    79    93   177    92   220 0.75 Methyltransferase domain
PseudoU_synth_2      PF00849.17   164 sp|Q8ZGM2|RSUA_YERPE -            235   9.3e-19   67.8   0.0   1   1   4.4e-22   3.2e-18   66.0   0.0     2   164    62   192    61   192 0.83 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|Q8ZGM2|RSUA_YERPE -            235   6.9e-08   31.7   0.1   1   1   1.8e-11   1.3e-07   30.8   0.1     1    47     1    46     1    47 0.91 S4 domain
RuvA_N               PF01330.16    61 sp|Q8ZEU6|RUVA_YERPE -            204   2.7e-23   81.5   0.2   1   1   6.2e-26   9.2e-23   79.8   0.0     1    61     1    62     1    62 1.00 RuvA N terminal domain
RuvA_C               PF07499.8     47 sp|Q8ZEU6|RUVA_YERPE -            204   1.3e-13   50.8   2.5   1   1   1.1e-16   1.6e-13   50.5   1.4     2    45   160   202   159   204 0.95 RuvA, C-terminal domain
HHH_5                PF14520.1     60 sp|Q8ZEU6|RUVA_YERPE -            204   1.2e-11   44.6   1.5   1   1   1.6e-14   2.3e-11   43.6   0.1     1    58    69   128    69   130 0.85 Helix-hairpin-helix domain
HHH                  PF00633.18    30 sp|Q8ZEU6|RUVA_YERPE -            204   6.7e-11   41.2   0.3   1   2   1.4e-06    0.0021   17.6   0.0     7    29    69    91    65    92 0.88 Helix-hairpin-helix motif
HHH                  PF00633.18    30 sp|Q8ZEU6|RUVA_YERPE -            204   6.7e-11   41.2   0.3   2   2   8.1e-08   0.00012   21.5   0.1     4    27   101   124    98   126 0.85 Helix-hairpin-helix motif
IMS_HHH              PF11798.3     32 sp|Q8ZEU6|RUVA_YERPE -            204   0.00026   20.8   0.1   2   2   2.5e-05     0.036   14.1   0.0    14    28   111   125   108   127 0.88 IMS family HHH motif
Transposase_20       PF02371.11    87 sp|Q8ZEU6|RUVA_YERPE -            204    0.0018   18.3   0.0   2   2   0.00017      0.26   11.4   0.0     3    28   109   132   107   136 0.86 Transposase IS116/IS110/IS902 family
HHH_8                PF14716.1     68 sp|Q8ZEU6|RUVA_YERPE -            204    0.0051   16.9   0.3   2   2   0.00052      0.78    9.9   0.0    41    63   106   124    97   127 0.81 Helix-hairpin-helix domain
RuvB_N               PF05496.7    234 sp|Q8ZEU5|RUVB_YERPE -            334  5.5e-118  392.1   0.1   1   1  1.6e-120    7e-118  391.7   0.1     2   233     7   238     6   239 0.99 Holliday junction DNA helicase ruvB N-terminus
RuvB_C               PF05491.8     76 sp|Q8ZEU5|RUVB_YERPE -            334   1.5e-34  117.4   0.1   1   1   3.1e-36   1.3e-33  114.3   0.0     1    75   256   330   256   331 0.98 Holliday junction DNA helicase ruvB C-terminus
AAA                  PF00004.24   132 sp|Q8ZEU5|RUVB_YERPE -            334   8.3e-20   71.3   0.0   1   1   5.6e-22   2.4e-19   69.8   0.0     1   130    58   181    58   183 0.94 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|Q8ZEU5|RUVB_YERPE -            334   8.6e-09   35.2   0.0   1   1     8e-09   3.5e-06   26.7   0.0     1   139    57   175    57   175 0.89 AAA domain (dynein-related subfamily)
TIP49                PF06068.8    398 sp|Q8ZEU5|RUVB_YERPE -            334   3.7e-06   25.9   0.1   1   2   4.4e-07   0.00019   20.2   0.0    25    77    30    82    12    88 0.90 TIP49 C-terminus
AAA_22               PF13401.1    131 sp|Q8ZEU5|RUVB_YERPE -            334   1.7e-05   24.9   0.1   1   2   3.7e-05     0.016   15.3   0.0     6    27    57    78    53    83 0.90 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZEU5|RUVB_YERPE -            334   3.8e-05   24.4   0.0   1   1   1.6e-07   7.1e-05   23.6   0.0     2    30    58    85    57   232 0.73 AAA domain
Sigma54_activat      PF00158.21   168 sp|Q8ZEU5|RUVB_YERPE -            334     8e-05   22.1   0.0   1   2   0.00027      0.12   11.8   0.0     6    45    39    78    34   101 0.85 Sigma-54 interaction domain
AAA_3                PF07726.6    131 sp|Q8ZEU5|RUVB_YERPE -            334   0.00012   21.6   0.0   1   2   0.00013     0.055   13.0   0.0     1    28    57    84    57    88 0.93 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|Q8ZEU5|RUVB_YERPE -            334   0.00018   20.7   0.2   1   2   9.3e-05      0.04   13.0   0.0     5    43    31    76    28    85 0.68 Magnesium chelatase, subunit ChlI
AAA_14               PF13173.1    128 sp|Q8ZEU5|RUVB_YERPE -            334    0.0004   20.2   0.0   1   1   1.7e-06   0.00076   19.3   0.0     5    92    58   137    56   149 0.66 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZEU5|RUVB_YERPE -            334   0.00069   19.9   0.0   1   1   3.1e-06    0.0014   18.9   0.0     1    27    58    84    58   139 0.89 AAA domain
Bac_DnaA             PF00308.13   219 sp|Q8ZEU5|RUVB_YERPE -            334   0.00074   19.2   0.1   1   3    0.0001     0.043   13.4   0.0    20    59    41    80    29    87 0.84 Bacterial dnaA  protein
AAA_19               PF13245.1     76 sp|Q8ZEU5|RUVB_YERPE -            334     0.002   17.8   0.0   1   1   9.8e-06    0.0043   16.7   0.0    11    33    54    77    42   118 0.80 Part of AAA domain
AAA_10               PF12846.2    304 sp|Q8ZEU5|RUVB_YERPE -            334    0.0026   17.2   0.0   1   1   4.8e-05     0.021   14.2   0.0     3    24    57    78    56    84 0.91 AAA-like domain
AAA_24               PF13479.1    213 sp|Q8ZEU5|RUVB_YERPE -            334    0.0036   16.8   0.1   1   1   2.6e-05     0.011   15.2   0.1     6    21    58    73    57   124 0.85 AAA domain
RNA_helicase         PF00910.17   107 sp|Q8ZEU5|RUVB_YERPE -            334    0.0094   16.1   0.0   1   1   3.8e-05     0.016   15.3   0.0     1    58    58   115    58   131 0.70 RNA helicase
Rad17                PF03215.10   519 sp|Q8ZEU5|RUVB_YERPE -            334      0.01   14.5   0.0   1   1   3.2e-05     0.014   14.1   0.0    47    83    57    93    36   104 0.81 Rad17 cell cycle checkpoint protein
AAA_28               PF13521.1    163 sp|Q8ZEU5|RUVB_YERPE -            334     0.014   15.3   0.1   1   1   0.00014     0.059   13.3   0.0     2    24    58    81    57    98 0.86 AAA domain
AAA_16               PF13191.1    185 sp|Q8ZEU5|RUVB_YERPE -            334     0.014   15.3   0.2   1   1    0.0003      0.13   12.2   0.0    18    42    49    73    36    84 0.81 AAA ATPase domain
DUF815               PF05673.8    250 sp|Q8ZEU5|RUVB_YERPE -            334     0.017   14.0   0.0   1   2    0.0016      0.68    8.8   0.0    49   115    51   114    22   117 0.80 Protein of unknown function (DUF815)
TetR_C               PF02909.12   139 sp|Q8ZEU5|RUVB_YERPE -            334     0.018   14.7   0.0   1   1   6.5e-05     0.028   14.0   0.0     8    84   212   287   205   314 0.79 Tetracyclin repressor, C-terminal all-alpha domain
NB-ARC               PF00931.17   287 sp|Q8ZEU5|RUVB_YERPE -            334     0.018   13.9   0.0   1   1     7e-05     0.031   13.1   0.0    17    43    53    79    38    84 0.81 NB-ARC domain
NTPase_1             PF03266.10   168 sp|Q8ZEU5|RUVB_YERPE -            334     0.018   14.7   0.2   1   2   0.00036      0.16   11.6   0.0     1    23    57    79    57    95 0.85 NTPase
T2SE                 PF00437.15   272 sp|Q8ZEU5|RUVB_YERPE -            334     0.019   13.8   0.0   1   1   7.5e-05     0.033   13.0   0.0   104   152    28    79    11    85 0.84 Type II/IV secretion system protein
ABC_tran             PF00005.22   137 sp|Q8ZEU5|RUVB_YERPE -            334     0.023   15.0   0.0   1   1   9.1e-05      0.04   14.2   0.0    13    35    57    79    53   115 0.86 ABC transporter
AAA_33               PF13671.1    143 sp|Q8ZEU5|RUVB_YERPE -            334     0.037   13.9   0.0   1   1   0.00027      0.12   12.2   0.0     2    24    58    80    58   125 0.87 AAA domain
IstB_IS21            PF01695.12   178 sp|Q8ZEU5|RUVB_YERPE -            334     0.038   13.4   0.1   1   1   0.00038      0.17   11.3   0.0    49    69    57    77    47    87 0.88 IstB-like ATP binding protein
NACHT                PF05729.7    166 sp|Q8ZEU5|RUVB_YERPE -            334     0.044   13.4   0.0   1   1   0.00026      0.11   12.1   0.0     3    24    58    79    56    85 0.89 NACHT domain
Sigma54_activ_2      PF14532.1    138 sp|Q8ZEU5|RUVB_YERPE -            334     0.047   13.7   0.0   1   1   0.00019     0.082   12.9   0.0    22    87    56   124    39   137 0.73 Sigma-54 interaction domain
FtsK_SpoIIIE         PF01580.13   205 sp|Q8ZEU5|RUVB_YERPE -            334      0.06   12.8   0.0   1   1   0.00029      0.12   11.7   0.0    33    56    48    73    20    79 0.74 FtsK/SpoIIIE family
AAA_11               PF13086.1    236 sp|Q8ZEU5|RUVB_YERPE -            334      0.14   11.6   0.0   1   1   0.00049      0.21   11.1   0.0    11    41    45    79    37   163 0.78 AAA domain
DUF258               PF03193.11   161 sp|Q8ZEU5|RUVB_YERPE -            334      0.15   11.2   0.0   1   1   0.00053      0.23   10.6   0.0    37    63    57    83    35    98 0.82 Protein of unknown function, DUF258
RuvC                 PF02075.12   149 sp|Q8ZEU7|RUVC_YERPE -            173   1.1e-63  213.5   0.4   1   1   2.5e-67   1.3e-63  213.3   0.4     1   149     4   150     4   150 1.00 Crossover junction endodeoxyribonuclease RuvC
DUF3882              PF07066.6    159 sp|Q8ZEU7|RUVC_YERPE -            173    0.0022   17.8   0.0   1   1   1.2e-06    0.0058   16.5   0.0    18   153    13   146     1   153 0.68 Lactococcus phage M3 protein
NeuB                 PF03102.9    241 sp|Q8ZEU7|RUVC_YERPE -            173     0.011   14.8   0.1   1   1     3e-06     0.015   14.4   0.1    99   149    93   152    77   157 0.90 NeuB family
UPF0081              PF03652.10   135 sp|Q8ZHG2|RUVX_YERPE -            140   1.7e-43  147.9   0.0   1   1   2.6e-47   1.9e-43  147.7   0.0     2   135     5   137     4   137 0.98 Uncharacterised protein family (UPF0081)
Erythro-docking      PF09277.6     58 sp|Q8ZHG2|RUVX_YERPE -            140     0.024   14.3   0.0   1   1   6.9e-06     0.051   13.2   0.0     6    43    18    54    14    57 0.91 Erythronolide synthase, docking
SecA_DEAD            PF07517.9    266 sp|Q7CGB6|SECA_YERPE -            904  7.7e-122  405.6   0.2   1   1  5.6e-125  1.4e-121  404.8   0.2     2   265     7   401     6   402 1.00 SecA DEAD-like domain
SecA_SW              PF07516.8    214 sp|Q7CGB6|SECA_YERPE -            904   1.2e-76  257.2   9.8   1   1   1.3e-79   3.3e-76  255.8   9.8     1   213   617   830   617   831 0.98 SecA Wing and Scaffold domain
SecA_PP_bind         PF01043.15   114 sp|Q7CGB6|SECA_YERPE -            904   1.4e-40  138.1   0.1   1   1   1.6e-43     4e-40  136.7   0.1     2   114   229   358   228   358 0.95 SecA preprotein cross-linking domain
SEC-C                PF02810.10    21 sp|Q7CGB6|SECA_YERPE -            904     1e-11   44.0   7.5   1   1   6.5e-15   1.6e-11   43.4   7.5     1    20   884   903   884   904 0.95 SEC-C motif
DEAD                 PF00270.24   169 sp|Q7CGB6|SECA_YERPE -            904   0.00043   19.8   0.0   1   1   5.1e-07    0.0013   18.2   0.0    14   133    95   216    85   240 0.80 DEAD/DEAH box helicase
SecB                 PF02556.9    149 sp|Q8ZJM7|SECB_YERPE -            158   3.2e-58  195.5   0.1   1   1   2.4e-62   3.6e-58  195.3   0.1     1   148     1   145     1   146 0.97 Preprotein translocase subunit SecB
SecM                 PF06558.7    148 sp|Q8ZIE1|SECM_YERPE -            177   1.9e-63  212.5   2.0   1   1     3e-67   2.2e-63  212.3   2.0     1   148    24   177    24   177 0.97 Secretion monitor precursor protein (SecM)
7TM_GPCR_Srbc        PF10316.4    273 sp|Q8ZIE1|SECM_YERPE -            177      0.15   11.3   0.0   2   2   3.6e-05      0.26   10.4   0.0   201   249   109   157    76   161 0.65 Serpentine type 7TM GPCR chemoreceptor Srbc
SelA                 PF03841.8    367 sp|Q8Z9Y1|SELA_YERPE -            462  1.8e-165  550.1   0.0   1   1  7.1e-169  2.1e-165  549.9   0.0     1   366    82   450    82   451 0.99 L-seryl-tRNA selenium transferase
Se-cys_synth_N       PF12390.3     40 sp|Q8Z9Y1|SELA_YERPE -            462   4.9e-10   39.3   1.9   1   1   1.7e-13   4.9e-10   39.3   1.9     1    40     9    48     9    48 0.99 Selenocysteine synthase N terminal
Cys_Met_Meta_PP      PF01053.15   386 sp|Q8Z9Y1|SELA_YERPE -            462   0.00055   18.3   0.1   1   1     2e-06     0.006   14.9   0.1    59   229   132   316   127   340 0.67 Cys/Met metabolism PLP-dependent enzyme
Aminotran_5          PF00266.14   371 sp|Q8Z9Y1|SELA_YERPE -            462   0.00062   18.6   0.2   1   1   1.7e-06    0.0051   15.6   0.2    75   223   152   316   147   328 0.67 Aminotransferase class-V
Beta_elim_lyase      PF01212.16   290 sp|Q8Z9Y1|SELA_YERPE -            462    0.0024   17.0   0.5   1   1   4.2e-06     0.012   14.7   0.5     8   227   108   329   100   370 0.66 Beta-eliminating lyase
AIRS_C               PF02769.17   153 sp|Q8ZEK1|SELD_YERPE -            348   3.6e-25   88.7   0.0   1   1   7.2e-29   5.4e-25   88.1   0.0     1   146   169   338   169   344 0.86 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|Q8ZEK1|SELD_YERPE -            348   4.9e-19   68.3   0.3   1   1   1.4e-22     1e-18   67.3   0.3     2    95    50   140    49   141 0.95 AIR synthase related protein, N-terminal domain
Aminotran_5          PF00266.14   371 sp|Q8ZGB4|SERC_YERPE -            361   6.1e-63  212.7   0.0   1   1   9.2e-67   6.8e-63  212.6   0.0     1   371     4   349     4   349 0.96 Aminotransferase class-V
DUF1961              PF09224.6    218 sp|Q8ZGB4|SERC_YERPE -            361     0.059   12.4   0.0   1   1   1.8e-05      0.14   11.2   0.0    26    67   119   160   103   166 0.83 Domain of unknown function (DUF1961)
SfsA                 PF03749.8    216 sp|P58431|SFSA_YERPE -            245   4.8e-80  268.0   0.0   1   1   7.3e-84   5.4e-80  267.8   0.0     2   214    15   230    14   232 0.98 Sugar fermentation stimulation protein
DUF3883              PF13020.1     91 sp|P58431|SFSA_YERPE -            245      0.02   14.5   0.0   1   1   4.5e-06     0.033   13.9   0.0     6    51    92   141    87   153 0.80 Domain of unknown function (DUF3883)
OmpH                 PF03938.9    158 sp|P58607|SKP_YERPE  -            165   1.6e-33  115.9  15.1   1   1   5.1e-37   1.9e-33  115.6  15.1     3   157    12   164     9   165 0.97 Outer membrane protein (OmpH-like)
ECM11                PF15463.1    139 sp|P58607|SKP_YERPE  -            165    0.0059   16.8   0.4   1   2   1.6e-06    0.0059   16.8   0.4    98   138    40    80    31    80 0.92 Extracellular mutant protein 11
Cytochrom_C_2        PF01322.15   122 sp|P58607|SKP_YERPE  -            165     0.071   13.6   4.5   1   1   3.3e-05      0.12   12.8   4.3    35   111    51   133    31   137 0.74 Cytochrome C'
DUF3552              PF12072.3    201 sp|P58607|SKP_YERPE  -            165      0.19   10.8  12.7   1   1    0.0002      0.72    9.0  12.6    67   137    46   114    36   127 0.70 Domain of unknown function (DUF3552)
TetR_N               PF00440.18    47 sp|Q8ZJP6|SLMA_YERPE -            198   2.7e-10   39.7   0.0   1   1   8.4e-14   4.2e-10   39.1   0.0     5    46    20    61    15    62 0.84 Bacterial regulatory proteins, tetR family
WHG                  PF13305.1     81 sp|Q8ZJP6|SLMA_YERPE -            198      0.02   15.4   0.4   2   2   1.8e-05      0.09   13.3   0.1     9    74    97   171    93   177 0.82 WHG domain
HTH_AsnC-type        PF13404.1     42 sp|Q8ZJP6|SLMA_YERPE -            198     0.055   13.0   0.2   1   1   2.5e-05      0.13   11.8   0.2     8    35    15    49    13    50 0.76 AsnC-type helix-turn-helix domain
MarR                 PF01047.17    59 sp|P69988|SLYA_YERPE -            143   9.8e-19   66.8   0.1   1   2   5.9e-20   4.8e-17   61.3   0.1     1    58    29    87    29    88 0.98 MarR family
HTH_27               PF13463.1     68 sp|P69988|SLYA_YERPE -            143   2.5e-13   50.1   0.3   1   1   5.8e-16   4.8e-13   49.2   0.3     1    66    29    94    29    95 0.95 Winged helix DNA-binding domain
MarR_2               PF12802.2     62 sp|P69988|SLYA_YERPE -            143   8.1e-13   47.8   0.1   1   1   2.9e-15   2.4e-12   46.3   0.0     2    62    28    87    26    87 0.96 MarR family
HTH_24               PF13412.1     48 sp|P69988|SLYA_YERPE -            143    0.0008   18.7   1.3   1   1     2e-06    0.0017   17.7   0.0    16    48    45    77    45    77 0.95 Winged helix-turn-helix DNA-binding
RP-C                 PF03428.8    177 sp|P69988|SLYA_YERPE -            143    0.0011   18.5   0.0   1   2   3.4e-05     0.028   13.8   0.0    72   115    48    89    44    98 0.89 Replication protein C N-terminal domain
HTH_Crp_2            PF13545.1     76 sp|P69988|SLYA_YERPE -            143    0.0014   18.4   0.2   1   1   6.5e-06    0.0053   16.5   0.1    30    60    48    78    37    95 0.79 Crp-like helix-turn-helix domain
TrmB                 PF01978.14    68 sp|P69988|SLYA_YERPE -            143     0.002   17.7   0.0   1   1   1.5e-05     0.012   15.2   0.0    27    55    51    79    46    90 0.92 Sugar-specific transcriptional regulator TrmB
B-block_TFIIIC       PF04182.7     75 sp|P69988|SLYA_YERPE -            143    0.0024   17.6   0.1   1   1     6e-06    0.0049   16.6   0.1    21    54    49    82    47   114 0.83 B-block binding subunit of TFIIIC
HTH_5                PF01022.15    47 sp|P69988|SLYA_YERPE -            143    0.0038   16.8   0.2   2   2   0.00014      0.11   12.1   0.0    20    46    51    77    46    78 0.94 Bacterial regulatory protein, arsR family
GntR                 PF00392.16    64 sp|P69988|SLYA_YERPE -            143    0.0061   15.9   0.0   1   1     2e-05     0.016   14.6   0.0    23    57    42    79    40    81 0.87 Bacterial regulatory proteins, gntR family
HTH_20               PF12840.2     61 sp|P69988|SLYA_YERPE -            143     0.015   15.1   0.1   1   1     5e-05     0.042   13.6   0.0    29    57    51    79    43    80 0.94 Helix-turn-helix domain
HxlR                 PF01638.12    91 sp|P69988|SLYA_YERPE -            143     0.021   14.4   0.1   1   1   4.9e-05      0.04   13.5   0.1    23    68    51    95    29   108 0.79 HxlR-like helix-turn-helix
DUF2250              PF10007.4     93 sp|P69988|SLYA_YERPE -            143     0.022   14.6   0.3   1   1   7.6e-05     0.063   13.1   0.0     9    65    32    88    22    97 0.71 Uncharacterized protein conserved in archaea (DUF2250)
HTH_IclR             PF09339.5     52 sp|P69988|SLYA_YERPE -            143     0.047   13.2   0.0   1   1   0.00012       0.1   12.2   0.0    13    51    41    79    39    80 0.91 IclR helix-turn-helix domain
HTH_36               PF13730.1     55 sp|P69988|SLYA_YERPE -            143     0.062   13.4   0.0   1   1    0.0002      0.16   12.0   0.0    27    55    48    76    38    76 0.90 Helix-turn-helix domain
Fe_dep_repress       PF01325.14    60 sp|P69988|SLYA_YERPE -            143     0.083   12.8   0.0   1   1   0.00017      0.14   12.0   0.0    26    53    50    77    36    80 0.90 Iron dependent repressor, N-terminal DNA binding domain
HTH_34               PF13601.1     80 sp|P69988|SLYA_YERPE -            143       0.1   12.6   0.1   1   1   0.00035      0.29   11.2   0.0    19    63    51    94    45    98 0.86 Winged helix DNA-binding domain
HTH_1                PF00126.22    60 sp|P69988|SLYA_YERPE -            143       0.1   12.3   0.2   1   1   0.00062      0.51   10.1   0.1    20    40    53    73    51    96 0.83 Bacterial regulatory helix-turn-helix protein, lysR family
FKBP_C               PF00254.23    94 sp|Q7CFU4|SLYD_YERPE -            195   4.5e-10   39.4   0.0   1   1   5.7e-14   8.4e-10   38.5   0.0     5    93     3   136     1   137 0.81 FKBP-type peptidyl-prolyl cis-trans isomerase
SlyX                 PF04102.7     69 sp|Q8ZJC1|SLYX_YERPE -             72   9.3e-25   86.8   4.6   1   1   4.2e-28     1e-24   86.6   4.6     2    69     6    72     5    72 0.98 SlyX
Cep57_CLD_2          PF14197.1     69 sp|Q8ZJC1|SLYX_YERPE -             72     0.034   14.0   5.2   1   1   2.3e-05     0.057   13.3   5.2     6    53     2    53     1    59 0.87 Centrosome localisation domain of PPC89
DUF641               PF04859.7    132 sp|Q8ZJC1|SLYX_YERPE -             72      0.23   11.2   3.0   1   1    0.0001      0.25   11.1   3.0    76   123     3    50     1    59 0.85 Plant protein of unknown function (DUF641)
CENP-F_leu_zip       PF10473.4    140 sp|Q8ZJC1|SLYX_YERPE -             72      0.28   11.0   8.7   1   1   0.00012       0.3   10.9   8.7    18    77     2    61     1    67 0.91 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
IncA                 PF04156.9    191 sp|Q8ZJC1|SLYX_YERPE -             72      0.73    9.4   6.9   1   1   0.00036      0.88    9.1   6.9    91   145     4    58     2    62 0.92 IncA protein
Flg_hook             PF02120.11    85 sp|Q8ZJC1|SLYX_YERPE -             72      0.83    9.3   6.0   1   2   0.00032       0.8    9.4   1.0    51    76     4    29     3    36 0.88 Flagellar hook-length control protein FliK
DUF494               PF04361.8    155 sp|Q8ZJ77|SMG_YERPE  -            157   3.7e-64  215.0   0.8   1   1   2.8e-68   4.1e-64  214.9   0.8     1   155     1   157     1   157 0.99 Protein of unknown function (DUF494)
SMP_2                PF10144.4    210 sp|Q8ZIQ1|SMP_YERPE  -            233  1.5e-111  370.5   2.4   1   1    7e-115  1.7e-111  370.3   2.4     1   210     1   212     1   212 1.00 Bacterial virulence factor haemolysin
FeoB_C               PF07664.7     54 sp|Q8ZIQ1|SMP_YERPE  -            233     0.012   14.9   0.2   2   2     5e-06     0.012   14.9   0.2     8    30   169   191   166   192 0.92 Ferrous iron transport protein B C terminus
Sigma_reg_N          PF13800.1     96 sp|Q8ZIQ1|SMP_YERPE  -            233     0.067   13.2   0.0   1   1   9.3e-05      0.23   11.5   0.0     6    52     2    47     1    75 0.57 Sigma factor regulator N-terminal
Stimulus_sens_1      PF13756.1    112 sp|Q8ZIQ1|SMP_YERPE  -            233       0.1   13.0   0.3   1   1   9.4e-05      0.23   11.8   0.1     1    33    71   104    71   124 0.87 Stimulus-sensing domain
DUF3426              PF11906.3    149 sp|Q8ZIQ1|SMP_YERPE  -            233      0.87    9.2   3.8   1   1   9.4e-05      0.23   11.1   0.3     2    83    18   108    16   112 0.74 Protein of unknown function (DUF3426)
Orn_Arg_deC_N        PF02784.11   251 sp|Q8ZHG8|SPEA_YERPE -            659     3e-67  226.4   0.1   1   1   7.9e-71   3.9e-67  226.0   0.1     2   251   100   369    99   369 0.97 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC      PF00278.17   116 sp|Q8ZHG8|SPEA_YERPE -            659   3.3e-30  104.1   0.0   1   1   1.3e-33   6.2e-30  103.2   0.0     1   115   372   587   372   588 0.85 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Ecotin               PF03974.8    128 sp|Q8ZHG8|SPEA_YERPE -            659      0.13   11.9   0.0   1   2   9.9e-05      0.49   10.1   0.0    41   121    24   100    15   106 0.79 Ecotin
AdoMet_dc            PF02675.10   106 sp|Q8ZBJ7|SPED_YERPE -            264   2.6e-35  120.5   0.0   1   1   3.7e-39   5.4e-35  119.4   0.0    12   106    40   169    33   169 0.98 S-adenosylmethionine decarboxylase
Spermine_synth       PF01564.12   246 sp|Q8ZBJ8|SPEE_YERPE -            296   2.6e-85  285.2   0.0   1   1   1.9e-88   3.5e-85  284.8   0.0    10   239    11   240     4   246 0.97 Spermine/spermidine synthase
Methyltransf_18      PF12847.2    112 sp|Q8ZBJ8|SPEE_YERPE -            296   1.3e-07   32.1   0.0   1   1   1.7e-10   3.1e-07   30.9   0.0     3   110    79   191    77   193 0.81 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZBJ8|SPEE_YERPE -            296   5.3e-06   26.4   0.0   1   1   6.6e-09   1.2e-05   25.2   0.0     3   112    80   189    78   192 0.88 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZBJ8|SPEE_YERPE -            296   9.5e-05   22.0   0.0   1   1   1.2e-07   0.00023   20.7   0.0     3   126    77   208    75   246 0.76 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZBJ8|SPEE_YERPE -            296   0.00044   19.6   0.0   1   1   3.8e-07    0.0007   19.0   0.0    29   136    75   188    46   217 0.81 Methyltransferase small domain
Methyltransf_25      PF13649.1    101 sp|Q8ZBJ8|SPEE_YERPE -            296     0.004   17.4   0.1   1   1   1.4e-05     0.026   14.8   0.0     2    75    82   158    81   186 0.74 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q8ZBJ8|SPEE_YERPE -            296     0.015   15.7   0.0   1   1     2e-05     0.038   14.4   0.0     1    72    82   157    82   160 0.85 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q8ZBJ8|SPEE_YERPE -            296     0.028   14.9   0.0   1   1     5e-05     0.092   13.2   0.0     3    94    84   189    82   190 0.83 Methyltransferase domain
SprT-like            PF10263.4    157 sp|Q8ZHG6|SPRT_YERPE -            170   6.3e-26   90.9   1.4   1   1   2.6e-29   7.6e-26   90.6   1.4     5   156    22   165    18   166 0.83 SprT-like family
Peptidase_MA_2       PF13485.1    128 sp|Q8ZHG6|SPRT_YERPE -            170   6.3e-05   23.0   0.2   1   1   3.8e-08   0.00011   22.2   0.2    18    54    65   104    43   106 0.78 Peptidase MA superfamily
DUF45                PF01863.12   205 sp|Q8ZHG6|SPRT_YERPE -            170   0.00053   19.8   0.3   1   2   6.3e-07    0.0019   18.0   0.1   108   176    12    84     5   108 0.75 Protein of unknown function DUF45
zf-H2C2_2            PF13465.1     26 sp|Q8ZHG6|SPRT_YERPE -            170      0.15   12.4   2.5   2   2   0.00012      0.35   11.2   0.3     3    22   141   160   140   161 0.93 Zinc-finger double domain
Zn-ribbon_8          PF09723.5     42 sp|Q8ZHG6|SPRT_YERPE -            170      0.18   11.7   2.3   2   2   0.00018      0.55   10.2   0.2     5    16   152   163   152   168 0.78 Zinc ribbon domain
SmpB                 PF01668.13    68 sp|Q8ZH14|SSRP_YERPE -            160   2.9e-31  107.0   0.1   1   1   6.6e-35   4.9e-31  106.3   0.1     2    67    13    78    12    80 0.97 SmpB protein
ELFV_dehydrog_N      PF02812.13   131 sp|Q8ZH14|SSRP_YERPE -            160     0.099   12.2   0.0   1   1   1.9e-05      0.14   11.7   0.0    47    81   106   141    69   157 0.82 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
SDF                  PF00375.13   390 sp|Q0WJ82|SSTT_YERPE -            418   9.9e-65  218.7  44.2   1   1   7.6e-69   1.1e-64  218.6  44.2     1   387    17   398    17   401 0.95 Sodium:dicarboxylate symporter family
ABC_tran             PF00005.22   137 sp|Q74PI5|SSUB_YERPE -            271   6.3e-30  104.2   0.0   1   1   1.4e-32   9.1e-30  103.7   0.0     1   136    28   161    28   162 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|Q74PI5|SSUB_YERPE -            271   1.6e-07   31.5   0.0   1   2   2.6e-05     0.016   15.1   0.0     2    25    41    62    40    91 0.79 AAA domain
AAA_21               PF13304.1    303 sp|Q74PI5|SSUB_YERPE -            271   1.6e-07   31.5   0.0   2   2   3.9e-05     0.025   14.5   0.0   235   299   132   194   125   199 0.91 AAA domain
MMR_HSR1             PF01926.18   116 sp|Q74PI5|SSUB_YERPE -            271   1.1e-05   25.3   0.0   1   1   2.4e-08   1.5e-05   24.8   0.0     2    68    41   135    40   201 0.73 50S ribosome-binding GTPase
AAA_16               PF13191.1    185 sp|Q74PI5|SSUB_YERPE -            271   1.6e-05   25.0   3.1   1   1   2.7e-08   1.7e-05   24.8   2.2    14   158    29   159    24   207 0.71 AAA ATPase domain
AAA_22               PF13401.1    131 sp|Q74PI5|SSUB_YERPE -            271   1.7e-05   24.9   0.2   1   1   7.6e-08   4.9e-05   23.4   0.2     4   123    38   191    34   197 0.79 AAA domain
AAA_10               PF12846.2    304 sp|Q74PI5|SSUB_YERPE -            271   0.00018   21.0   0.3   1   2   6.9e-05     0.045   13.1   0.1     4    29    41    66    38    71 0.81 AAA-like domain
DUF258               PF03193.11   161 sp|Q74PI5|SSUB_YERPE -            271   0.00026   20.1   0.0   1   1     6e-07   0.00039   19.6   0.0    22    61    24    64     9   103 0.82 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|Q74PI5|SSUB_YERPE -            271    0.0004   19.7   0.0   2   2   0.00057      0.37    9.9   0.0   136   204   133   197    67   212 0.77 RecF/RecN/SMC N terminal domain
AAA_17               PF13207.1    121 sp|Q74PI5|SSUB_YERPE -            271   0.00081   20.1   0.2   1   1   3.5e-06    0.0023   18.7   0.1     2    21    41    60    40   121 0.75 AAA domain
AAA_25               PF13481.1    194 sp|Q74PI5|SSUB_YERPE -            271    0.0011   18.3   0.2   1   2   1.3e-05    0.0084   15.5   0.0    29    55    34    60    23    90 0.77 AAA domain
AAA_29               PF13555.1     62 sp|Q74PI5|SSUB_YERPE -            271    0.0035   16.8   0.1   1   1   1.5e-05    0.0099   15.3   0.0    15    40    31    55    24    61 0.84 P-loop containing region of AAA domain
AAA_33               PF13671.1    143 sp|Q74PI5|SSUB_YERPE -            271    0.0048   16.7   0.1   1   1     3e-05     0.019   14.8   0.1     2   109    41   197    40   205 0.57 AAA domain
AAA_28               PF13521.1    163 sp|Q74PI5|SSUB_YERPE -            271    0.0087   16.0   0.7   1   2   0.00028      0.18   11.7   0.2     2    22    41    61    40   158 0.80 AAA domain
Miro                 PF08477.8    119 sp|Q74PI5|SSUB_YERPE -            271     0.011   16.1   0.0   1   1     3e-05     0.019   15.4   0.0     2    25    41    64    41   126 0.80 Miro-like protein
AAA_30               PF13604.1    196 sp|Q74PI5|SSUB_YERPE -            271     0.014   14.9   0.1   1   2   0.00017      0.11   12.0   0.0    17    53    37    74    31   128 0.80 AAA domain
AAA_18               PF13238.1    129 sp|Q74PI5|SSUB_YERPE -            271     0.015   15.5   0.0   1   1   3.6e-05     0.023   14.9   0.0     1    23    41    72    41   102 0.73 AAA domain
NB-ARC               PF00931.17   287 sp|Q74PI5|SSUB_YERPE -            271     0.016   14.0   0.0   1   1   7.3e-05     0.047   12.5   0.0     8    37    27    56    21    59 0.82 NB-ARC domain
NACHT                PF05729.7    166 sp|Q74PI5|SSUB_YERPE -            271     0.017   14.7   0.1   1   1   5.7e-05     0.036   13.7   0.1     2    22    40    60    39    77 0.84 NACHT domain
SbcCD_C              PF13558.1     90 sp|Q74PI5|SSUB_YERPE -            271     0.062   13.2   0.1   1   1   0.00042      0.27   11.1   0.1    32    88   133   176   109   178 0.77 Putative exonuclease SbcCD, C subunit
MobB                 PF03205.9    140 sp|Q74PI5|SSUB_YERPE -            271     0.099   12.3   0.0   1   1   0.00026      0.17   11.6   0.0     3    21    41    59    39    67 0.90 Molybdopterin guanine dinucleotide synthesis protein B
Dynamin_N            PF00350.18   168 sp|Q74PI5|SSUB_YERPE -            271      0.18   11.5   0.2   1   1   0.00059      0.38   10.5   0.2     1    22    41    62    41    76 0.88 Dynamin family
Bac_luciferase       PF00296.15   307 sp|Q8ZB04|SSUD_YERPE -            382   2.3e-81  273.2   5.5   1   1     2e-85     3e-81  272.9   5.5     3   306     5   325     2   326 0.98 Luciferase-like monooxygenase
Pyr_redox_2          PF07992.9    201 sp|Q8ZA97|STHA_YERPE -            466   1.3e-32  113.3   0.3   1   1   3.1e-35   2.4e-32  112.4   0.1     1   199     8   315     8   317 0.87 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim        PF02852.17   110 sp|Q8ZA97|STHA_YERPE -            466   9.7e-31  106.0   0.2   2   2   1.5e-32   1.2e-29  102.5   0.5     1   109   346   457   346   458 0.97 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Pyr_redox            PF00070.22    80 sp|Q8ZA97|STHA_YERPE -            466   5.1e-20   71.6   3.4   2   2   1.4e-20   1.1e-17   64.1   0.0     1    78   178   255   178   259 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|Q8ZA97|STHA_YERPE -            466   5.2e-14   52.7   0.1   1   2   9.8e-14   7.7e-11   42.4   0.1     1   176    10   185    10   212 0.77 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|Q8ZA97|STHA_YERPE -            466     2e-06   26.9   3.5   1   4   9.7e-07   0.00075   18.4   0.2     1    40     8    48     8    80 0.91 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|Q8ZA97|STHA_YERPE -            466   3.1e-06   25.9   1.4   1   3   1.7e-05     0.013   14.0   1.3     2    36     8    42     7    47 0.95 HI0933-like protein
NAD_binding_9        PF13454.1    156 sp|Q8ZA97|STHA_YERPE -            466   7.8e-06   25.7   1.2   1   3     0.001      0.79    9.4   0.1     2    76    11    89    10   117 0.67 FAD-NAD(P)-binding
NAD_binding_9        PF13454.1    156 sp|Q8ZA97|STHA_YERPE -            466   7.8e-06   25.7   1.2   3   3    0.0009      0.71    9.6   0.0    96   155   211   271   198   272 0.80 FAD-NAD(P)-binding
FAD_oxidored         PF12831.2    428 sp|Q8ZA97|STHA_YERPE -            466     1e-05   24.8   0.1   1   1     2e-08   1.5e-05   24.2   0.1     1    45     8    52     8   145 0.86 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|Q8ZA97|STHA_YERPE -            466   1.6e-05   24.1   0.6   1   1   6.1e-08   4.7e-05   22.5   0.2    14    62     3    51     1    65 0.88 Thi4 family
FAD_binding_2        PF00890.19   417 sp|Q8ZA97|STHA_YERPE -            466   2.8e-05   23.1   1.1   1   1   9.9e-08   7.8e-05   21.6   1.1     1    40     8    48     8    53 0.96 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|Q8ZA97|STHA_YERPE -            466   2.9e-05   23.9   1.1   1   1   1.8e-07   0.00014   21.7   0.2     1    51    11    62    11    77 0.81 NAD(P)-binding Rossmann-like domain
K_oxygenase          PF13434.1    341 sp|Q8ZA97|STHA_YERPE -            466   3.3e-05   22.9   0.0   1   1   8.1e-08   6.3e-05   22.0   0.0   132   204   123   190    91   228 0.86 L-lysine 6-monooxygenase (NADPH-requiring)
FAD_binding_3        PF01494.14   356 sp|Q8ZA97|STHA_YERPE -            466   0.00018   20.7   1.5   1   2   5.8e-06    0.0045   16.0   0.5     3    34     8    39     6    42 0.94 FAD binding domain
GIDA                 PF01134.17   392 sp|Q8ZA97|STHA_YERPE -            466    0.0005   19.0   3.5   1   2   1.3e-05    0.0098   14.7   0.5     1   150     8   148     8   168 0.73 Glucose inhibited division protein A
Lycopene_cycl        PF05834.7    374 sp|Q8ZA97|STHA_YERPE -            466    0.0014   17.6   0.0   1   3    0.0012      0.91    8.3   0.0     1   150     8   158     8   163 0.72 Lycopene cyclase protein
AlaDh_PNT_C          PF01262.16   168 sp|Q8ZA97|STHA_YERPE -            466    0.0033   17.0   0.0   2   2   6.9e-05     0.054   13.0   0.0    18    59   174   215   168   227 0.88 Alanine dehydrogenase/PNT, C-terminal domain
2-Hacid_dh_C         PF02826.14   178 sp|Q8ZA97|STHA_YERPE -            466     0.085   11.9   0.8   1   1   0.00028      0.22   10.6   0.0    25    69   165   209   144   256 0.84 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ApbA                 PF02558.11   151 sp|Q8ZA97|STHA_YERPE -            466      0.14   11.6   2.5   2   2   0.00038       0.3   10.5   0.0     1    81   179   260   179   268 0.84 Ketopantoate reductase PanE/ApbA
ATP-grasp_2          PF08442.5    202 sp|Q8ZH00|SUCC_YERPE -            388   9.4e-83  276.5   0.0   1   1   4.5e-86   1.3e-82  276.0   0.0     1   202     2   203     2   203 1.00 ATP-grasp domain
Ligase_CoA           PF00549.14   153 sp|Q8ZH00|SUCC_YERPE -            388   2.4e-24   85.7   2.8   1   1   1.3e-27   3.9e-24   84.9   2.8     1   153   262   382   262   382 0.98 CoA-ligase
ATP-grasp_5          PF13549.1    222 sp|Q8ZH00|SUCC_YERPE -            388   2.1e-15   56.5   0.0   1   1   1.5e-18   4.6e-15   55.4   0.0    10   219     3   215     1   217 0.81 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|Q8ZH00|SUCC_YERPE -            388   7.3e-08   32.3   0.1   1   2   7.6e-11   2.3e-07   30.7   0.0     7   104     7   108     4   152 0.72 ATP-grasp domain
GARS_A               PF01071.14   194 sp|Q8ZH00|SUCC_YERPE -            388    0.0045   16.5   0.0   1   1   2.5e-06    0.0075   15.8   0.0     6   103     8   117     4   128 0.77 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
SufE                 PF02657.10   125 sp|Q74TH2|SUFE_YERPE -            140   1.7e-41  140.7   0.0   1   1   1.3e-45   1.9e-41  140.6   0.0     1   124    10   134    10   135 0.98 Fe-S metabolism associated domain
Aminotran_5          PF00266.14   371 sp|Q8D0M6|SUFS_YERPE -            406  1.5e-158  527.3   0.2   1   1  4.6e-162  1.7e-158  527.2   0.2     1   371    25   394    25   394 1.00 Aminotransferase class-V
Cys_Met_Meta_PP      PF01053.15   386 sp|Q8D0M6|SUFS_YERPE -            406   0.00011   20.6   0.1   1   1   4.4e-08   0.00016   20.0   0.1    88   202   107   226    59   233 0.83 Cys/Met metabolism PLP-dependent enzyme
Beta_elim_lyase      PF01212.16   290 sp|Q8D0M6|SUFS_YERPE -            406   0.00011   21.4   0.1   1   1     4e-08   0.00015   21.0   0.1    42   215    83   246    46   402 0.68 Beta-eliminating lyase
DegT_DnrJ_EryC1      PF01041.12   363 sp|Q8D0M6|SUFS_YERPE -            406    0.0022   17.0   4.0   1   1   8.5e-07    0.0032   16.5   4.0    34   151    76   205    53   224 0.80 DegT/DnrJ/EryC1/StrS aminotransferase family
Multi_Drug_Res       PF00893.14    93 sp|Q8D1E4|SUGE_YERPE -            104   1.4e-32  111.9  11.6   1   1   5.8e-36   1.7e-32  111.7  11.6     1    93     1    93     1    93 0.99 Small Multidrug Resistance protein
EamA                 PF00892.15   126 sp|Q8D1E4|SUGE_YERPE -            104    0.0002   21.3  16.6   1   1   1.1e-07   0.00032   20.7  16.6    25   124     4   100     1   102 0.75 EamA-like transporter family
Nuc_sug_transp       PF04142.10   244 sp|Q8D1E4|SUGE_YERPE -            104     0.011   14.8   0.9   1   1   4.6e-06     0.014   14.5   0.4    32    89    44   102    29   104 0.86 Nucleotide-sugar transporter
EmrE                 PF13536.1    113 sp|Q8D1E4|SUGE_YERPE -            104     0.025   14.7  14.4   1   1   1.4e-05     0.042   14.0  14.4    38   105    34   101     1   104 0.71 Multidrug resistance efflux transporter
BRI3BP               PF14965.1    177 sp|Q8D1E4|SUGE_YERPE -            104       0.1   11.9   2.4   1   1   3.1e-05     0.093   12.0   2.2    50   100     8    61     1    88 0.82 Negative regulator of p53/TP53
SulA                 PF03846.9    119 sp|Q7CHL5|SULA_YERPE -            168   6.3e-57  190.4   4.2   1   1   5.2e-61   7.7e-57  190.1   4.2     2   119     4   120     3   120 0.99 Cell division inhibitor SulA
SurE                 PF01975.12   197 sp|Q8ZBP9|SURE_YERPE -            254   1.3e-62  210.5   0.1   1   1   1.2e-66   1.7e-62  210.2   0.1     2   196     3   184     2   185 0.93 Survival protein SurE
tRNA-synt_2c         PF01411.14   552 sp|Q8ZBT8|SYA_YERPE  -            875  2.5e-233  775.3   0.0   1   1  1.3e-236  3.3e-233  774.9   0.0     1   549     7   553     7   556 0.99 tRNA synthetases class II (A)
tRNA_SAD             PF07973.9     44 sp|Q8ZBT8|SYA_YERPE  -            875     1e-17   63.6   0.2   1   1   1.5e-20   3.7e-17   61.9   0.2     1    44   653   696   653   696 0.99 Threonyl and Alanyl tRNA synthetase second additional domain
DHHA1                PF02272.14    68 sp|Q8ZBT8|SYA_YERPE  -            875     1e-14   53.9   2.2   1   1   1.1e-17   2.6e-14   52.6   2.2     2    67   800   868   799   869 0.93 DHHA1 domain
QRPTase_C            PF01729.14   169 sp|Q8ZBT8|SYA_YERPE  -            875      0.14   11.7   1.6   2   2   9.5e-05      0.23   10.9   0.5    56   128   715   800   708   809 0.84 Quinolinate phosphoribosyl transferase, C-terminal domain
DUF904               PF06005.7     72 sp|Q8ZBT8|SYA_YERPE  -            875       4.6    7.5   7.7   1   1   0.00015      0.37   11.1   2.0     7    45   726   762   724   796 0.71 Protein of unknown function (DUF904)
tRNA-synt_1e         PF01406.14   301 sp|Q8ZCC0|SYC_YERPE  -            461  6.2e-140  465.5   0.0   1   1  3.7e-143  7.8e-140  465.2   0.0     2   300    15   313    14   314 0.99 tRNA synthetases class I (C) catalytic domain
DALR_2               PF09190.6     63 sp|Q8ZCC0|SYC_YERPE  -            461   5.1e-25   87.5   1.5   1   2   2.4e-28   5.1e-25   87.5   1.5     1    63   341   402   341   402 0.98 DALR domain
tRNA-synt_1g         PF09334.6    391 sp|Q8ZCC0|SYC_YERPE  -            461   5.7e-16   58.1   1.6   1   2   5.3e-10   1.1e-06   27.5   0.1    14    87    36   109    30   146 0.83 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZCC0|SYC_YERPE  -            461   5.7e-16   58.1   1.6   2   2   1.1e-10   2.3e-07   29.8   0.1   313   373   252   311   231   318 0.85 tRNA synthetases class I (M)
tRNA-synt_1f         PF01921.13   360 sp|Q8ZCC0|SYC_YERPE  -            461   3.8e-06   25.8   0.0   2   2   3.7e-07   0.00079   18.1   0.0   274   319   259   303   199   333 0.78 tRNA synthetases class I (K)
tRNA-synt_1          PF00133.17   601 sp|Q8ZCC0|SYC_YERPE  -            461   4.9e-06   24.8   0.1   2   2   9.6e-09     2e-05   22.8   0.0   515   596   221   300   207   305 0.84 tRNA synthetases class I (I, L, M and V)
Mut7-C               PF01927.11   147 sp|Q8ZCC0|SYC_YERPE  -            461     0.078   12.9   0.0   1   1     7e-05      0.15   12.0   0.0    11    44    49    84    45   148 0.77 Mut7-C RNAse domain
Syd                  PF07348.7    176 sp|Q8CZY7|SYDP_YERPE -            183   4.1e-68  228.1   0.0   1   1   3.1e-72   4.6e-68  227.9   0.0     2   176     6   179     5   179 0.99 Syd protein (SUKH-2)
tRNA-synt_2          PF00152.15   335 sp|Q8ZEV0|SYD_YERPE  -            598    2e-132  441.0   0.0   1   1    8e-136  2.4e-132  440.7   0.0     1   334   117   558   117   559 0.99 tRNA synthetases class II (D, K and N)
GAD                  PF02938.9     95 sp|Q8ZEV0|SYD_YERPE  -            598     6e-30  103.2   0.0   1   1   4.1e-33   1.2e-29  102.2   0.0     1    95   307   406   307   406 0.97 GAD domain
tRNA_anti-codon      PF01336.20    75 sp|Q8ZEV0|SYD_YERPE  -            598   1.4e-17   63.3   0.0   1   1   1.1e-20   3.2e-17   62.1   0.0     1    75    18   102    18   102 0.96 OB-fold nucleic acid binding domain
tRNA-synt_2b         PF00587.20   173 sp|Q8ZEV0|SYD_YERPE  -            598   5.5e-07   29.3   0.1   1   2   0.00013      0.38   10.3   0.0     2    30   141   168   140   170 0.92 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_2b         PF00587.20   173 sp|Q8ZEV0|SYD_YERPE  -            598   5.5e-07   29.3   0.1   2   2   1.9e-06    0.0055   16.3   0.1    85   146   208   267   197   290 0.77 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_2d         PF01409.15   247 sp|Q8ZEV0|SYD_YERPE  -            598    0.0003   20.0   0.1   1   2   0.00029      0.86    8.7   0.1   105   155   209   257   194   264 0.80 tRNA synthetases class II core domain (F)
tRNA-synt_2d         PF01409.15   247 sp|Q8ZEV0|SYD_YERPE  -            598    0.0003   20.0   0.1   2   2   0.00026      0.76    8.9   0.0   213   237   530   552   518   556 0.83 tRNA synthetases class II core domain (F)
tRNA-synt_1c         PF00749.16   314 sp|Q8ZCK0|SYE_YERPE  -            471  5.5e-117  389.9   0.0   1   1  9.1e-121  6.8e-117  389.6   0.0     1   314     2   305     2   305 0.99 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_2d         PF01409.15   247 sp|Q8ZDX0|SYFA_YERPE -            327  2.8e-106  354.2   0.1   1   1    7e-110  3.4e-106  353.9   0.1     2   247    92   326    91   326 0.99 tRNA synthetases class II core domain (F)
Phe_tRNA-synt_N      PF02912.13    73 sp|Q8ZDX0|SYFA_YERPE -            327   6.4e-27   93.0   3.4   1   2   1.8e-30   8.8e-27   92.6   2.4     2    73    17    88    16    88 0.98 Aminoacyl tRNA synthetase class II, N-terminal domain
FAD-oxidase_C        PF02913.14   248 sp|Q8ZDX0|SYFA_YERPE -            327      0.12   11.6   0.4   2   2   0.00014      0.67    9.2   0.0    89   141    53   102    42   104 0.86 FAD linked oxidases, C-terminal domain
B3_4                 PF03483.12   174 sp|Q8ZDX1|SYFB_YERPE -            795   2.4e-71  238.7   0.0   1   1   1.1e-74   4.2e-71  237.9   0.0     1   174   212   385   212   385 1.00 B3/4 domain
FDX-ACB              PF03147.9     94 sp|Q8ZDX1|SYFB_YERPE -            795     7e-29   99.8   0.2   2   2   7.6e-32   2.8e-28   97.9   0.0     1    94   701   794   701   794 0.99 Ferredoxin-fold anticodon binding domain
tRNA_bind            PF01588.15    95 sp|Q8ZDX1|SYFB_YERPE -            795   5.8e-27   93.3   0.1   1   1   3.8e-30   1.4e-26   92.1   0.1     1    94    45   145    45   146 0.94 Putative tRNA binding domain
B5                   PF03484.10    70 sp|Q8ZDX1|SYFB_YERPE -            795   9.5e-20   70.2   0.1   1   1   8.2e-23     3e-19   68.5   0.0     2    70   404   471   403   471 0.97 tRNA synthetase B5 domain
tRNA-synt_2e         PF02091.10   284 sp|Q8Z9W6|SYGA_YERPE -            304  1.7e-158  526.0   0.0   1   1  1.3e-162  1.9e-158  525.9   0.0     1   284     9   298     9   298 0.99 Glycyl-tRNA synthetase alpha subunit
tRNA_synt_2f         PF02092.12   549 sp|Q8Z9W7|SYGB_YERPE -            689  1.5e-224  746.6   0.1   1   2  3.8e-228  2.8e-224  745.7   0.0     1   548     6   552     6   553 0.99 Glycyl-tRNA synthetase beta subunit
DALR_1               PF05746.10   119 sp|Q8Z9W7|SYGB_YERPE -            689   1.2e-08   34.8   1.9   1   1   4.9e-12   3.6e-08   33.3   1.9     4   104   582   679   579   685 0.90 DALR anticodon binding domain
tRNA-synt_His        PF13393.1    311 sp|Q8ZCT6|SYH_YERPE  -            424   2.7e-47  161.3   0.0   1   1   1.1e-50   3.4e-47  161.0   0.0     1   311    10   312    10   312 0.88 Histidyl-tRNA synthetase
tRNA-synt_2b         PF00587.20   173 sp|Q8ZCT6|SYH_YERPE  -            424   4.8e-31  107.6   0.0   1   1   2.3e-34   6.7e-31  107.1   0.0     1   169    21   184    21   188 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|Q8ZCT6|SYH_YERPE  -            424   7.2e-10   38.6   0.0   1   1     5e-13   1.5e-09   37.6   0.0     2    91   331   419   330   420 0.84 Anticodon binding domain
tRNA-synt_2          PF00152.15   335 sp|Q8ZCT6|SYH_YERPE  -            424   0.00042   19.1   0.0   2   3   0.00023      0.68    8.6   0.0    94   185   103   193    95   274 0.71 tRNA synthetases class II (D, K and N)
TBP-binding          PF09247.6     62 sp|Q8ZCT6|SYH_YERPE  -            424     0.024   14.8   0.6   2   2   6.3e-05      0.19   11.9   0.2    31    47   227   243   214   250 0.82 TATA box-binding protein binding
tRNA-synt_1          PF00133.17   601 sp|Q8ZIM0|SYI_YERPE  -            938  1.3e-222  740.0   0.0   1   1  9.6e-226  1.6e-222  739.8   0.0     2   601    28   641    27   641 0.98 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|Q8ZIM0|SYI_YERPE  -            938   5.5e-32  110.6   0.0   1   1   6.7e-35   1.1e-31  109.6   0.0     1   152   685   841   685   842 0.89 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|Q8ZIM0|SYI_YERPE  -            938   3.7e-21   75.2   0.1   1   3     3e-14   4.9e-11   41.9   0.0     8   136    58   201    54   220 0.79 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZIM0|SYI_YERPE  -            938   3.7e-21   75.2   0.1   2   3   0.00043       0.7    8.4   0.0   167   238   404   475   383   485 0.66 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZIM0|SYI_YERPE  -            938   3.7e-21   75.2   0.1   3   3   1.1e-07   0.00018   20.3   0.0   310   356   584   631   566   650 0.80 tRNA synthetases class I (M)
zf-FPG_IleRS         PF06827.9     30 sp|Q8ZIM0|SYI_YERPE  -            938   3.4e-10   39.3   2.4   2   2   2.1e-13   3.4e-10   39.3   2.4     1    28   898   925   898   927 0.96 Zinc finger found in FPG and IleRS
tRNA-synt_1e         PF01406.14   301 sp|Q8ZIM0|SYI_YERPE  -            938   3.7e-08   32.8   0.0   2   2   8.5e-09   1.4e-05   24.3   0.0   232   299   580   648   563   650 0.85 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1f         PF01921.13   360 sp|Q8ZIM0|SYI_YERPE  -            938   2.8e-06   26.2   0.0   2   2   1.2e-08     2e-05   23.4   0.0   241   340   562   659   557   679 0.81 tRNA synthetases class I (K)
tRNA-synt_1_2        PF13603.1    185 sp|Q8ZIM0|SYI_YERPE  -            938   5.5e-06   25.7   0.0   1   1     6e-09   9.8e-06   24.9   0.0    87   141   304   358   224   367 0.80 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1d         PF00750.14   354 sp|Q8ZIM0|SYI_YERPE  -            938     0.029   13.2   0.1   2   2   0.00013      0.21   10.3   0.0   243   304   559   618   552   623 0.78 tRNA synthetases class I (R)
tRNA-synt_2          PF00152.15   335 sp|Q8ZHK5|SYK_YERPE  -            505   1.8e-97  326.1   1.8   2   2  8.1e-101     3e-97  325.3   0.5     1   334   162   502   162   503 0.89 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|Q8ZHK5|SYK_YERPE  -            505   2.1e-15   56.3   0.0   1   1   1.5e-18   5.4e-15   55.0   0.0     1    75    68   146    68   146 0.98 OB-fold nucleic acid binding domain
tRNA-synt_2d         PF01409.15   247 sp|Q8ZHK5|SYK_YERPE  -            505   2.4e-06   26.9   1.2   2   3   2.4e-06     0.009   15.2   0.0   104   183   254   334   251   360 0.82 tRNA synthetases class II core domain (F)
tRNA-synt_2d         PF01409.15   247 sp|Q8ZHK5|SYK_YERPE  -            505   2.4e-06   26.9   1.2   3   3   0.00024      0.89    8.6   0.0   214   236   473   495   465   498 0.90 tRNA synthetases class II core domain (F)
tRNA-synt_1_2        PF13603.1    185 sp|Q8ZDF8|SYL_YERPE  -            860   2.6e-78  261.5   0.0   1   1   1.9e-81   3.9e-78  260.9   0.0     1   184   221   403   221   404 0.98 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1          PF00133.17   601 sp|Q8ZDF8|SYL_YERPE  -            860   3.1e-69  233.5   9.2   1   5   2.2e-29   4.7e-26   90.9   0.4     3   178    15   171    13   174 0.88 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|Q8ZDF8|SYL_YERPE  -            860   3.1e-69  233.5   9.2   2   5   1.3e-08   2.7e-05   22.3   0.5   361   412   174   225   171   229 0.95 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|Q8ZDF8|SYL_YERPE  -            860   3.1e-69  233.5   9.2   3   5   3.9e-21   8.4e-18   63.7   0.0   188   349   230   408   225   417 0.75 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|Q8ZDF8|SYL_YERPE  -            860   3.1e-69  233.5   9.2   4   5   1.6e-09   3.4e-06   25.3   0.0   414   556   417   571   412   574 0.61 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|Q8ZDF8|SYL_YERPE  -            860   3.1e-69  233.5   9.2   5   5   9.4e-11     2e-07   29.4   0.1   560   594   618   652   571   659 0.74 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZDF8|SYL_YERPE  -            860   1.6e-33  115.9   0.1   1   3   2.4e-26   5.2e-23   81.3   0.0     5   218    39   224    35   232 0.88 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZDF8|SYL_YERPE  -            860   1.6e-33  115.9   0.1   3   3     7e-09   1.5e-05   23.8   0.0   311   364   601   656   591   668 0.79 tRNA synthetases class I (M)
Anticodon_1          PF08264.8    153 sp|Q8ZDF8|SYL_YERPE  -            860   6.8e-16   58.3   0.0   1   1     7e-19   1.5e-15   57.2   0.0     4   149   701   822   698   826 0.83 Anticodon-binding domain of tRNA
tRNA-synt_1f         PF01921.13   360 sp|Q8ZDF8|SYL_YERPE  -            860   0.00017   20.3   0.0   1   2   8.3e-05      0.18   10.4   0.0     2    63    17    74    16    82 0.79 tRNA synthetases class I (K)
tRNA-synt_1d         PF00750.14   354 sp|Q8ZDF8|SYL_YERPE  -            860   0.00037   19.4   0.0   1   1     3e-07   0.00063   18.6   0.0    28    61    41    74    14    77 0.84 tRNA synthetases class I (R)
tRNA-synt_1e         PF01406.14   301 sp|Q8ZDF8|SYL_YERPE  -            860   0.00042   19.5   0.0   2   2   0.00034      0.73    8.8   0.0   250   298   616   665   608   668 0.81 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g         PF09334.6    391 sp|Q8ZG01|SYM_YERPE  -            675  2.8e-154  513.5   0.0   1   1  1.4e-157  3.6e-154  513.1   0.0     1   390     8   396     8   397 0.98 tRNA synthetases class I (M)
tRNA_bind            PF01588.15    95 sp|Q8ZG01|SYM_YERPE  -            675   3.6e-22   77.9   0.0   1   1   2.9e-25     7e-22   77.0   0.0     1    94   579   672   579   673 0.97 Putative tRNA binding domain
tRNA-synt_1          PF00133.17   601 sp|Q8ZG01|SYM_YERPE  -            675     2e-17   62.4   1.2   1   3   7.8e-15   1.9e-11   42.6   0.1    28   102    11    84     2   109 0.85 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|Q8ZG01|SYM_YERPE  -            675     2e-17   62.4   1.2   3   3   3.6e-07   0.00089   17.3   0.0   546   597   318   369   284   373 0.81 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1e         PF01406.14   301 sp|Q8ZG01|SYM_YERPE  -            675   2.3e-11   43.3   0.2   1   2   5.3e-07    0.0013   17.9   0.0    15   120    13   119     2   132 0.85 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1e         PF01406.14   301 sp|Q8ZG01|SYM_YERPE  -            675   2.3e-11   43.3   0.2   2   2   1.6e-08   3.9e-05   22.9   0.0   211   283   291   362   285   382 0.83 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1f         PF01921.13   360 sp|Q8ZG01|SYM_YERPE  -            675   4.9e-06   25.4   0.0   2   2   7.8e-07    0.0019   16.9   0.0   265   323   315   373   309   386 0.75 tRNA synthetases class I (K)
Anticodon_1          PF08264.8    153 sp|Q8ZG01|SYM_YERPE  -            675    0.0032   17.2   0.0   1   1   2.4e-06     0.006   16.3   0.0     5    92   418   506   414   557 0.79 Anticodon-binding domain of tRNA
tRNA-synt_2          PF00152.15   335 sp|P58697|SYN_YERPE  -            466   4.5e-72  242.6   0.0   1   1   1.9e-75   5.5e-72  242.3   0.0     4   334   120   461   117   462 0.91 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|P58697|SYN_YERPE  -            466   8.4e-12   44.7   0.1   1   1   7.9e-15   2.3e-11   43.3   0.1     1    74    20    99    20   100 0.95 OB-fold nucleic acid binding domain
tRNA-synt_His        PF13393.1    311 sp|P58697|SYN_YERPE  -            466      0.13   11.3   0.0   1   2    0.0001       0.3   10.0   0.0     5    44   133   172   131   187 0.86 Histidyl-tRNA synthetase
tRNA-synt_2b         PF00587.20   173 sp|Q7CH25|SYP_YERPE  -            572   6.3e-41  139.8   0.1   1   1   1.9e-44   9.4e-41  139.2   0.1     3   168    51   214    49   219 0.97 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA_edit            PF04073.10   123 sp|Q7CH25|SYP_YERPE  -            572   4.2e-26   91.2   0.0   1   1   1.6e-29   7.8e-26   90.3   0.0     1   122   257   378   257   379 0.95 Aminoacyl-tRNA editing domain
HGTP_anticodon       PF03129.15    94 sp|Q7CH25|SYP_YERPE  -            572   5.6e-21   74.2   0.1   1   1   2.5e-24   1.2e-20   73.2   0.1     1    92   475   567   475   569 0.97 Anticodon binding domain
tRNA-synt_1c         PF00749.16   314 sp|Q8ZDD9|SYQ_YERPE  -            555  1.9e-122  407.8   0.0   1   1  3.2e-126  2.4e-122  407.5   0.0     1   313    27   337    27   338 0.99 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C       PF03950.13   174 sp|Q8ZDD9|SYQ_YERPE  -            555   4.9e-63  211.9   0.0   2   2   1.8e-66   1.4e-62  210.4   0.0     1   174   340   528   340   528 0.96 tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1d         PF00750.14   354 sp|Q8ZEV7|SYR_YERPE  -            576  2.9e-138  460.5   0.3   1   1  1.3e-141  3.9e-138  460.1   0.3    14   354   107   446    95   446 0.98 tRNA synthetases class I (R)
DALR_1               PF05746.10   119 sp|Q8ZEV7|SYR_YERPE  -            576   2.8e-34  117.5   0.1   1   1   2.2e-37   6.4e-34  116.4   0.1     1   119   460   576   460   576 0.94 DALR anticodon binding domain
Arg_tRNA_synt_N      PF03485.11    85 sp|Q8ZEV7|SYR_YERPE  -            576   2.1e-22   79.4   0.3   1   1   4.7e-25   1.4e-21   76.8   0.1     3    85     7    87     2    87 0.94 Arginyl tRNA synthetase N terminal domain
tRNA-synt_1e         PF01406.14   301 sp|Q8ZEV7|SYR_YERPE  -            576    0.0031   16.6   0.2   1   1   2.1e-06    0.0062   15.7   0.2     6   133   111   290   107   309 0.82 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g         PF09334.6    391 sp|Q8ZEV7|SYR_YERPE  -            576     0.017   13.8   0.1   2   2   1.3e-05     0.038   12.6   0.0     8    85   122   200   115   291 0.73 tRNA synthetases class I (M)
tRNA-synt_2b         PF00587.20   173 sp|Q8ZGC4|SYS_YERPE  -            430   4.2e-38  130.6   0.0   1   1   3.5e-41   6.5e-38  130.0   0.0     2   172   173   349   172   350 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
Seryl_tRNA_N         PF02403.17   108 sp|Q8ZGC4|SYS_YERPE  -            430   7.9e-30  103.0   6.1   1   1   7.6e-33   1.4e-29  102.2   6.1     1   108     1   107     1   107 0.99 Seryl-tRNA synthetase N-terminal domain
Spc7                 PF08317.6    326 sp|Q8ZGC4|SYS_YERPE  -            430     0.027   13.1   1.6   1   1   2.3e-05     0.043   12.4   1.6   177   247    28   104     6   115 0.81 Spc7 kinetochore protein
Phage_GP20           PF06810.6    156 sp|Q8ZGC4|SYS_YERPE  -            430     0.057   12.8   1.3   1   1   5.2e-05     0.096   12.1   1.3    16    79    33    93    18   103 0.82 Phage minor structural protein GP20
DUF4201              PF13870.1    177 sp|Q8ZGC4|SYS_YERPE  -            430      0.21   10.9   5.3   1   1   0.00025      0.46    9.8   4.7    97   175    27   103     5   105 0.80 Domain of unknown function (DUF4201)
End3                 PF12761.2    195 sp|Q8ZGC4|SYS_YERPE  -            430      0.36   10.4   3.8   1   1   0.00033      0.61    9.6   3.8   111   194    10    93     5    94 0.77 Actin cytoskeleton-regulatory complex protein END3
tRNA-synt_2b         PF00587.20   173 sp|Q8ZDW5|SYT_YERPE  -            642   8.5e-48  162.1   0.8   1   1   3.6e-51   1.3e-47  161.5   0.8     2   172   274   437   273   438 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|Q8ZDW5|SYT_YERPE  -            642   2.5e-21   75.4   1.2   1   1   2.5e-24   9.1e-21   73.6   1.0     1    92   541   629   541   635 0.88 Anticodon binding domain
tRNA_SAD             PF07973.9     44 sp|Q8ZDW5|SYT_YERPE  -            642   8.1e-15   54.4   0.0   1   1   4.2e-18   1.6e-14   53.5   0.0     3    44   172   219   171   219 0.97 Threonyl and Alanyl tRNA synthetase second additional domain
TGS                  PF02824.16    60 sp|Q8ZDW5|SYT_YERPE  -            642   3.6e-12   45.9   0.2   1   2   7.2e-15   2.7e-11   43.1   0.1     3    60     4    61     2    61 0.97 TGS domain
tRNA-synt_1          PF00133.17   601 sp|Q8ZBH1|SYV_YERPE  -            965  2.2e-225  749.2   0.3   1   1  7.7e-228  1.3e-224  746.7   0.3     2   601    28   645    27   645 0.96 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|Q8ZBH1|SYV_YERPE  -            965   7.9e-44  149.0   0.2   1   1   9.1e-47   1.5e-43  148.1   0.2     1   152   688   839   688   840 0.91 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|Q8ZBH1|SYV_YERPE  -            965   1.2e-18   66.9   3.2   1   3   1.9e-10   3.2e-07   29.3   0.1     5    55    53   103    49   210 0.73 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|Q8ZBH1|SYV_YERPE  -            965   1.2e-18   66.9   3.2   2   3   2.4e-09   3.9e-06   25.7   0.8   158   349   370   590   359   592 0.67 tRNA synthetases class I (M)
Val_tRNA-synt_C      PF10458.4     66 sp|Q8ZBH1|SYV_YERPE  -            965   1.4e-17   63.5   5.1   1   1     2e-20   3.4e-17   62.2   5.1     3    61   900   958   898   963 0.93 Valyl tRNA synthetase tRNA binding arm
tRNA-synt_1_2        PF13603.1    185 sp|Q8ZBH1|SYV_YERPE  -            965     3e-09   36.4   0.0   2   2   4.6e-10   7.5e-07   28.6   0.0    86   182   261   360   258   363 0.76 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1d         PF00750.14   354 sp|Q8ZBH1|SYV_YERPE  -            965   0.00032   19.6   0.1   2   2   0.00013      0.22   10.3   0.1   253   317   530   595   524   616 0.67 tRNA synthetases class I (R)
tRNA-synt_1f         PF01921.13   360 sp|Q8ZBH1|SYV_YERPE  -            965      0.02   13.5   0.0   1   1   2.2e-05     0.036   12.7   0.0   267   304   551   590   546   593 0.79 tRNA synthetases class I (K)
HALZ                 PF02183.13    45 sp|Q8ZBH1|SYV_YERPE  -            965      0.16   11.7   0.1   1   1   0.00021      0.34   10.6   0.1    20    43   902   925   900   927 0.89 Homeobox associated leucine zipper
tRNA-synt_1b         PF00579.20   292 sp|Q8ZBH1|SYV_YERPE  -            965       0.3   10.1   5.0   1   2    0.0002      0.33   10.0   0.1   163   209   534   578   531   585 0.68 tRNA synthetases class I (W and Y)
tRNA-synt_1b         PF00579.20   292 sp|Q8ZJF2|SYW_YERPE  -            342   9.6e-87  290.7   0.0   1   1   8.6e-91   1.3e-86  290.3   0.0     5   291    11   293     8   294 0.98 tRNA synthetases class I (W and Y)
tRNA-synt_1b         PF00579.20   292 sp|Q8ZE20|SYY_YERPE  -            424   6.4e-90  301.2   0.0   1   1   1.6e-93   8.1e-90  300.8   0.0     3   291    31   328    29   329 0.98 tRNA synthetases class I (W and Y)
S4                   PF01479.20    48 sp|Q8ZE20|SYY_YERPE  -            424   1.3e-05   24.5   0.0   1   1   5.6e-09   2.8e-05   23.4   0.0     3    43   359   399   359   404 0.91 S4 domain
S4_2                 PF13275.1     65 sp|Q8ZE20|SYY_YERPE  -            424    0.0033   17.0   0.0   1   1   1.7e-06    0.0084   15.6   0.0     9    42   358   391   352   393 0.94 S4 domain
Transaldolase        PF00923.14   287 sp|Q8ZIN2|TAL_YERPE  -            317  4.6e-103  344.2   0.1   1   1    7e-107  5.2e-103  344.1   0.1     1   287    14   313    14   313 0.95 Transaldolase
DUF3052              PF11253.3    127 sp|Q8ZIN2|TAL_YERPE  -            317     0.015   14.8   1.3   2   3   1.2e-05     0.089   12.3   0.2    41    83    47    91    45   147 0.77 Protein of unknown function (DUF3052)
Methyltransf_31      PF13847.1    152 sp|Q8ZDP7|TAM_YERPE  -            258   2.1e-15   56.6   0.0   1   1   2.1e-18   2.6e-15   56.3   0.0     3   118    31   146    29   190 0.81 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q8ZDP7|TAM_YERPE  -            258   3.4e-13   49.6   0.0   1   1   3.6e-16   4.5e-13   49.2   0.0     3   129    14   151     9   211 0.72 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZDP7|TAM_YERPE  -            258   6.8e-13   49.1   0.0   1   1   1.3e-15   1.6e-12   47.9   0.0     5   110    35   129    32   131 0.81 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q8ZDP7|TAM_YERPE  -            258   4.9e-11   42.9   0.0   1   1     7e-14   8.7e-11   42.1   0.0     2    94    37   127    36   128 0.94 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q8ZDP7|TAM_YERPE  -            258   1.6e-10   41.2   0.0   1   1   2.2e-13   2.7e-10   40.4   0.0     2    83    36   108    35   124 0.84 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q8ZDP7|TAM_YERPE  -            258   3.6e-07   30.5   0.0   1   1   5.7e-10   7.1e-07   29.6   0.0     2    99    37   126    36   126 0.90 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZDP7|TAM_YERPE  -            258   0.00028   20.9   0.1   1   1   7.5e-07   0.00092   19.2   0.0     5   116    36   131    32   132 0.89 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZDP7|TAM_YERPE  -            258   0.00048   19.5   0.0   1   1     6e-07   0.00074   18.9   0.0    11    78    12    78    10   148 0.84 Methyltransferase small domain
RrnaAD               PF00398.15   262 sp|Q8ZDP7|TAM_YERPE  -            258    0.0023   16.9   0.0   1   1   2.8e-06    0.0034   16.4   0.0    21   100    22    96    15   108 0.86 Ribosomal RNA adenine dimethylase
FtsJ                 PF01728.14   181 sp|Q8ZDP7|TAM_YERPE  -            258    0.0045   17.0   0.0   1   1   1.1e-05     0.014   15.3   0.0    25    78    33    93    21   104 0.81 FtsJ-like methyltransferase
Methyltransf_4       PF02390.12   197 sp|Q8ZDP7|TAM_YERPE  -            258     0.021   13.8   0.0   1   2   4.4e-05     0.054   12.5   0.0    20    63    33    75     9   109 0.84 Putative methyltransferase
PCMT                 PF01135.14   210 sp|Q8ZDP7|TAM_YERPE  -            258     0.023   14.2   0.0   1   1   2.9e-05     0.035   13.6   0.0    70   183    28   140    18   157 0.73 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
MttA_Hcf106          PF02416.11    53 sp|Q8ZAM2|TATA_YERPE -             88   1.4e-12   46.5   0.1   1   1   2.4e-16   1.8e-12   46.1   0.1     1    47     4    56     4    86 0.82 mttA/Hcf106 family
DUF1980              PF09323.5    182 sp|Q8ZAM2|TATA_YERPE -             88      0.13   12.0   0.1   1   1   2.2e-05      0.16   11.6   0.1    79   145     9    78     4    87 0.58 Domain of unknown function (DUF1980)
MttA_Hcf106          PF02416.11    53 sp|Q8ZAM3|TATB_YERPE -            220    0.0011   18.0   2.0   1   1   2.6e-07    0.0019   17.2   2.0     1    28     4    31     4    91 0.86 mttA/Hcf106 family
ArsC                 PF03960.10   110 sp|Q8ZAM3|TATB_YERPE -            220     0.035   14.1   0.0   1   1   8.4e-06     0.062   13.3   0.0    10   103    30   124    27   131 0.88 ArsC family
MttA_Hcf106          PF02416.11    53 sp|Q8ZDH1|TATE_YERPE -             85   7.8e-13   47.3   0.1   1   1   6.1e-17     9e-13   47.1   0.1     1    47     4    61     4    80 0.83 mttA/Hcf106 family
ABC_tran             PF00005.22   137 sp|Q8ZJD0|TAUB_YERPE -            255   5.8e-31  107.6   0.0   1   1   1.7e-33   8.1e-31  107.1   0.0     1   136    17   156    17   157 0.95 ABC transporter
AAA_21               PF13304.1    303 sp|Q8ZJD0|TAUB_YERPE -            255   6.8e-08   32.8   0.1   1   2   7.6e-05     0.035   14.0   0.0     3    33    31    59    29    95 0.82 AAA domain
AAA_21               PF13304.1    303 sp|Q8ZJD0|TAUB_YERPE -            255   6.8e-08   32.8   0.1   2   2   9.1e-06    0.0042   17.0   0.0   234   298   126   188   103   191 0.91 AAA domain
AAA_19               PF13245.1     76 sp|Q8ZJD0|TAUB_YERPE -            255   7.7e-05   22.3   0.2   1   1   6.2e-07   0.00029   20.5   0.2     6    35    24    51    19    69 0.85 Part of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZJD0|TAUB_YERPE -            255   0.00013   22.0   1.4   1   1   6.7e-07   0.00031   20.7   1.4    21    51    24    54    15   203 0.65 AAA ATPase domain
DUF258               PF03193.11   161 sp|Q8ZJD0|TAUB_YERPE -            255   0.00016   20.9   0.0   1   1     5e-07   0.00023   20.3   0.0    24    58    15    50     2    64 0.78 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|Q8ZJD0|TAUB_YERPE -            255   0.00016   21.1   0.7   1   2     3e-05     0.014   14.8   0.1     3    23    29    49    27    61 0.87 AAA-like domain
AAA_28               PF13521.1    163 sp|Q8ZJD0|TAUB_YERPE -            255   0.00026   21.0   0.1   1   2   2.5e-05     0.011   15.6   0.0     2    20    30    48    29   109 0.75 AAA domain
AAA_22               PF13401.1    131 sp|Q8ZJD0|TAUB_YERPE -            255   0.00071   19.7   0.9   1   1   2.2e-05      0.01   15.9   0.9     3    26    26    49    22   193 0.60 AAA domain
AAA_15               PF13175.1    415 sp|Q8ZJD0|TAUB_YERPE -            255   0.00093   18.3   0.0   2   2   0.00039      0.18   10.8   0.0   372   411   149   188   131   190 0.94 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|Q8ZJD0|TAUB_YERPE -            255    0.0011   18.6   0.0   1   1   6.7e-06    0.0031   17.2   0.0    17    40    26    47    15    58 0.82 Archaeal ATPase
AAA                  PF00004.24   132 sp|Q8ZJD0|TAUB_YERPE -            255    0.0021   18.2   0.0   1   1   1.6e-05    0.0076   16.4   0.0     1    32    30    68    30   194 0.58 ATPase family associated with various cellular activities (AAA)
AAA_25               PF13481.1    194 sp|Q8ZJD0|TAUB_YERPE -            255    0.0026   17.1   0.0   1   1   9.7e-06    0.0045   16.4   0.0    30    80    24    79    12   122 0.79 AAA domain
AAA_23               PF13476.1    202 sp|Q8ZJD0|TAUB_YERPE -            255    0.0029   17.9   0.0   1   1   9.7e-06    0.0045   17.3   0.0    11    41    18    49    12    60 0.82 AAA domain
SbcCD_C              PF13558.1     90 sp|Q8ZJD0|TAUB_YERPE -            255    0.0038   17.1   0.0   1   1   1.5e-05     0.007   16.2   0.0    51    88   134   171   122   173 0.80 Putative exonuclease SbcCD, C subunit
Rad17                PF03215.10   519 sp|Q8ZJD0|TAUB_YERPE -            255    0.0061   15.2   0.1   1   1     2e-05    0.0093   14.6   0.1    34    67    16    49    12    58 0.85 Rad17 cell cycle checkpoint protein
AAA_17               PF13207.1    121 sp|Q8ZJD0|TAUB_YERPE -            255    0.0067   17.2   0.1   1   1   2.6e-05     0.012   16.4   0.1     2    21    30    49    29   131 0.84 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZJD0|TAUB_YERPE -            255    0.0073   15.8   0.1   1   1   2.7e-05     0.013   15.0   0.1    17    50    22    54     8    60 0.81 P-loop containing region of AAA domain
NACHT                PF05729.7    166 sp|Q8ZJD0|TAUB_YERPE -            255    0.0079   15.8   1.3   1   1     3e-05     0.014   15.0   0.2     2    21    29    48    28    51 0.90 NACHT domain
T2SE                 PF00437.15   272 sp|Q8ZJD0|TAUB_YERPE -            255     0.012   14.5   0.0   1   1   3.9e-05     0.018   13.9   0.0   124   161    23    59     3    65 0.81 Type II/IV secretion system protein
AAA_33               PF13671.1    143 sp|Q8ZJD0|TAUB_YERPE -            255     0.013   15.3   0.0   1   1   4.6e-05     0.021   14.6   0.0     1    32    29    62    29   196 0.59 AAA domain
AAA_14               PF13173.1    128 sp|Q8ZJD0|TAUB_YERPE -            255     0.016   15.0   0.0   1   1     7e-05     0.033   14.1   0.0     2    23    27    48    26    72 0.80 AAA domain
AAA_30               PF13604.1    196 sp|Q8ZJD0|TAUB_YERPE -            255     0.022   14.3   0.0   1   1   0.00015     0.072   12.6   0.0    15    42    25    51    17    71 0.80 AAA domain
AAA_24               PF13479.1    213 sp|Q8ZJD0|TAUB_YERPE -            255     0.025   14.1   0.0   1   1   0.00014     0.066   12.7   0.0     6    31    30    60    26   105 0.76 AAA domain
Zeta_toxin           PF06414.7    201 sp|Q8ZJD0|TAUB_YERPE -            255     0.027   13.5   0.0   1   1     9e-05     0.042   12.9   0.0    16    49    27    61    16    62 0.87 Zeta toxin
AAA_18               PF13238.1    129 sp|Q8ZJD0|TAUB_YERPE -            255     0.062   13.6   0.0   1   1   0.00022       0.1   12.8   0.0     1    36    30    69    30    81 0.78 AAA domain
RNA_helicase         PF00910.17   107 sp|Q8ZJD0|TAUB_YERPE -            255     0.069   13.3   0.0   1   1   0.00023      0.11   12.7   0.0     1    23    30    52    30   104 0.81 RNA helicase
AAA_5                PF07728.9    139 sp|Q8ZJD0|TAUB_YERPE -            255     0.071   12.8   0.1   1   1   0.00025      0.12   12.1   0.1     2    24    30    52    29    62 0.82 AAA domain (dynein-related subfamily)
ATP-synt_ab          PF00006.20   215 sp|Q8ZJD0|TAUB_YERPE -            255     0.081   12.4   1.0   1   1   0.00021     0.096   12.1   1.0     7    39    19    51    16   225 0.85 ATP synthase alpha/beta family, nucleotide-binding domain
PduV-EutP            PF10662.4    143 sp|Q8ZJD0|TAUB_YERPE -            255      0.12   11.8   0.1   1   1   0.00053      0.25   10.8   0.1     4    22    30    48    27    54 0.87 Ethanolamine utilisation - propanediol utilisation
Mg_chelatase         PF01078.16   207 sp|Q8ZJD0|TAUB_YERPE -            255      0.15   11.1   0.0   1   1   0.00057      0.27   10.3   0.0    16    49    21    54     9    76 0.81 Magnesium chelatase, subunit ChlI
ADH_N                PF08240.7    109 sp|Q8ZJN2|TDH_YERPE  -            341   3.5e-32  110.4   3.4   1   1   2.3e-35   3.9e-32  110.2   2.1     2   108    26   134    25   135 0.96 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|Q8ZJN2|TDH_YERPE  -            341   7.9e-27   93.3   0.0   1   1   7.1e-30   1.2e-26   92.8   0.0     1   128   174   301   174   304 0.95 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|Q8ZJN2|TDH_YERPE  -            341   4.9e-06   27.4   0.0   1   1   7.6e-09   1.3e-05   26.1   0.0    14   127   223   338   186   338 0.76 Zinc-binding dehydrogenase
FAD_binding_3        PF01494.14   356 sp|Q8ZJN2|TDH_YERPE  -            341    0.0063   15.6   0.4   1   1     7e-06     0.011   14.7   0.1     3    32   166   195   165   233 0.87 FAD binding domain
HI0933_like          PF03486.9    409 sp|Q8ZJN2|TDH_YERPE  -            341     0.016   13.6   0.2   1   1   1.5e-05     0.025   13.0   0.2     2    31   166   195   165   219 0.80 HI0933-like protein
FAD_binding_2        PF00890.19   417 sp|Q8ZJN2|TDH_YERPE  -            341     0.037   12.8   0.1   1   1   2.8e-05     0.046   12.5   0.1     1    51   166   216   166   255 0.86 FAD binding domain
ELFV_dehydrog        PF00208.16   244 sp|Q8ZJN2|TDH_YERPE  -            341     0.043   13.3   0.1   1   1   3.8e-05     0.063   12.8   0.1    25    65   158   197   150   226 0.85 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|Q8ZJN2|TDH_YERPE  -            341     0.043   13.3   0.1   1   1   4.2e-05     0.069   12.7   0.1    23    69   167   214   164   234 0.84 Alanine dehydrogenase/PNT, C-terminal domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|Q8ZJN2|TDH_YERPE  -            341      0.39   10.0   2.3   2   2   0.00025      0.41   10.0   0.1     3    41   167   206   165   234 0.86 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
TGT                  PF01702.13   238 sp|Q8ZC33|TGT_YERPE  -            374  3.1e-105  350.7   0.0   1   1  2.6e-109  3.8e-105  350.4   0.0     1   237   125   362   125   363 0.99 Queuine tRNA-ribosyltransferase
ThiC                 PF01964.13   421 sp|Q8ZAQ2|THIC_YERPE -            681  4.3e-200  664.6   0.0   1   1  1.2e-203  8.7e-200  663.6   0.0     1   420   163   612   163   613 0.99 ThiC family
ThiC-associated      PF13667.1     80 sp|Q8ZAQ2|THIC_YERPE -            681   1.4e-34  117.4   0.1   1   1     5e-38   3.7e-34  116.1   0.0     2    79    41   123    40   124 0.95 ThiC-associated domain
TMP-TENI             PF02581.12   180 sp|Q8ZAQ1|THIE_YERPE -            215   7.7e-56  188.0   0.2   1   1   6.2e-60   9.2e-56  187.7   0.2     6   180    20   189    15   189 0.96 Thiamine monophosphate synthase/TENI
ThiG                 PF05690.9    247 sp|Q8ZAP9|THIG_YERPE -            271  3.5e-105  350.5   0.1   1   1  1.7e-108  4.3e-105  350.2   0.1     1   236     3   236     3   243 0.98 Thiazole biosynthesis protein ThiG
His_biosynth         PF00977.16   229 sp|Q8ZAP9|THIG_YERPE -            271   2.2e-05   23.8   0.0   2   2   7.3e-08   0.00018   20.8   0.0    62   106   164   208   157   222 0.86 Histidine biosynthesis protein
FMN_dh               PF01070.13   357 sp|Q8ZAP9|THIG_YERPE -            271   0.00017   20.5   0.1   1   1   1.3e-07   0.00031   19.7   0.1   268   315   165   210   158   222 0.85 FMN-dependent dehydrogenase
NanE                 PF04131.9    192 sp|Q8ZAP9|THIG_YERPE -            271      0.02   13.8   0.1   1   1   1.8e-05     0.045   12.7   0.1   140   178   171   209   162   226 0.82 Putative N-acetylmannosamine-6-phosphate epimerase
IMPDH                PF00478.20   352 sp|Q8ZAP9|THIG_YERPE -            271     0.027   13.3   0.1   1   1   1.6e-05      0.04   12.8   0.1   208   244   172   208   168   218 0.88 IMP dehydrogenase / GMP reductase domain
PcrB                 PF01884.12   231 sp|Q8ZAP9|THIG_YERPE -            271       0.1   11.8   0.0   2   2   0.00013      0.31   10.2   0.0   180   221   173   215   156   223 0.85 PcrB family
ThiI                 PF02568.9    197 sp|Q8ZC49|THII_YERPE -            483   5.3e-75  251.2   0.0   1   1     4e-78   8.4e-75  250.5   0.0     1   196   176   369   176   370 0.99 Thiamine biosynthesis protein (ThiI)
THUMP                PF02926.12   144 sp|Q8ZC49|THII_YERPE -            483   7.7e-24   84.2   1.0   1   1     6e-27   1.3e-23   83.5   0.1     2   140    29   162    28   166 0.91 THUMP domain
QueC                 PF06508.8    210 sp|Q8ZC49|THII_YERPE -            483   8.7e-05   21.8   0.3   1   3   0.00013      0.27   10.5   0.0     3    42   182   222   180   246 0.82 Queuosine biosynthesis protein QueC
Rhodanese            PF00581.15   113 sp|Q8ZC49|THII_YERPE -            483    0.0014   18.9   0.1   1   1   3.5e-06    0.0074   16.6   0.1    34   103   433   481   398   482 0.67 Rhodanese-like domain
tRNA_Me_trans        PF03054.11   356 sp|Q8ZC49|THII_YERPE -            483     0.024   13.2   0.1   1   2   5.7e-05      0.12   10.8   0.0     2    37   180   215   179   231 0.85 tRNA methyl transferase
NAD_synthase         PF02540.12   242 sp|Q8ZC49|THII_YERPE -            483     0.028   13.3   0.9   1   1   8.2e-05      0.17   10.7   0.9   148   230   314   404   176   409 0.73 NAD synthase
ABC_tran             PF00005.22   137 sp|Q0WJE4|THIQ_YERPE -            236   1.5e-34  119.2   0.0   1   1   3.9e-37   2.1e-34  118.7   0.0     5   136    19   157    17   158 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|Q0WJE4|THIQ_YERPE -            236   1.2e-12   48.3   0.0   1   2   8.3e-06    0.0046   16.9   0.0     3    25    29    56    28    98 0.75 AAA domain
AAA_21               PF13304.1    303 sp|Q0WJE4|THIQ_YERPE -            236   1.2e-12   48.3   0.0   2   2   1.2e-09   6.6e-07   29.5   0.0   234   298   127   189   123   191 0.91 AAA domain
SMC_N                PF02463.14   220 sp|Q0WJE4|THIQ_YERPE -            236   1.3e-05   24.5   0.1   1   1   3.5e-07   0.00019   20.7   0.1    27   198    28   187    19   206 0.67 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|Q0WJE4|THIQ_YERPE -            236   2.3e-05   24.4   4.1   1   1   3.7e-07    0.0002   21.3   4.1    12   131    10   166     5   227 0.50 AAA ATPase domain
AAA_25               PF13481.1    194 sp|Q0WJE4|THIQ_YERPE -            236   4.5e-05   22.9   0.0   1   1   1.6e-07   8.8e-05   21.9   0.0    29    76    21    75    11   117 0.83 AAA domain
AAA_29               PF13555.1     62 sp|Q0WJE4|THIQ_YERPE -            236   0.00015   21.2   0.0   1   1   5.7e-07   0.00031   20.2   0.0    18    50    21    52    15    63 0.78 P-loop containing region of AAA domain
SbcCD_C              PF13558.1     90 sp|Q0WJE4|THIQ_YERPE -            236    0.0018   18.1   0.1   1   1   1.7e-05    0.0092   15.8   0.1    31    89   128   173   106   174 0.79 Putative exonuclease SbcCD, C subunit
AAA_10               PF12846.2    304 sp|Q0WJE4|THIQ_YERPE -            236    0.0033   16.8   0.1   1   1   1.2e-05    0.0067   15.9   0.1     5    33    29    57    27    67 0.87 AAA-like domain
AAA_19               PF13245.1     76 sp|Q0WJE4|THIQ_YERPE -            236     0.004   16.8   0.2   1   1   4.8e-05     0.026   14.2   0.1     9    37    25    51    19    71 0.74 Part of AAA domain
AAA_17               PF13207.1    121 sp|Q0WJE4|THIQ_YERPE -            236    0.0055   17.5   0.0   1   1   1.8e-05    0.0099   16.6   0.0     1    21    27    47    27   115 0.89 AAA domain
AAA_22               PF13401.1    131 sp|Q0WJE4|THIQ_YERPE -            236    0.0067   16.5   0.2   1   2    0.0012      0.67   10.1   0.0     7    24    28    45    23    83 0.90 AAA domain
DUF87                PF01935.12   229 sp|Q0WJE4|THIQ_YERPE -            236    0.0093   15.8   0.0   1   1   2.7e-05     0.015   15.1   0.0    12    44    14    46     6    58 0.79 Domain of unknown function DUF87
DUF258               PF03193.11   161 sp|Q0WJE4|THIQ_YERPE -            236     0.011   14.9   0.0   1   1   3.1e-05     0.017   14.3   0.0    36    57    26    47    19    79 0.87 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q0WJE4|THIQ_YERPE -            236     0.018   14.8   0.1   1   1   0.00011     0.058   13.2   0.1     2    33    28   105    28   218 0.52 AAA domain
AAA_30               PF13604.1    196 sp|Q0WJE4|THIQ_YERPE -            236     0.027   14.0   0.0   1   1   0.00012     0.066   12.7   0.0    17    50    25    57    19    75 0.81 AAA domain
AAA_23               PF13476.1    202 sp|Q0WJE4|THIQ_YERPE -            236     0.037   14.3   0.0   1   1   8.9e-05     0.049   13.9   0.0    22    40    28    46    18    91 0.88 AAA domain
MMR_HSR1             PF01926.18   116 sp|Q0WJE4|THIQ_YERPE -            236     0.045   13.7   0.0   1   1    0.0002      0.11   12.4   0.0     1    20    27    46    27    91 0.85 50S ribosome-binding GTPase
MobB                 PF03205.9    140 sp|Q0WJE4|THIQ_YERPE -            236     0.055   13.1   0.0   1   1   0.00018     0.097   12.3   0.0     2    32    27    57    26    68 0.82 Molybdopterin guanine dinucleotide synthesis protein B
AAA_5                PF07728.9    139 sp|Q0WJE4|THIQ_YERPE -            236     0.057   13.1   0.1   1   1   0.00038      0.21   11.3   0.0     2    39    28    66    27    72 0.87 AAA domain (dynein-related subfamily)
AAA_28               PF13521.1    163 sp|Q0WJE4|THIQ_YERPE -            236       0.1   12.5   0.1   1   1   0.00038      0.21   11.5   0.1     1    20    27    46    27    59 0.89 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|Q0WJE4|THIQ_YERPE -            236       0.1   12.0   0.0   1   1   0.00029      0.16   11.4   0.0    30    60    15    46    10    57 0.83 FtsK/SpoIIIE family
AAA_18               PF13238.1    129 sp|Q0WJE4|THIQ_YERPE -            236      0.11   12.7   0.4   1   1   0.00054       0.3   11.4   0.4     1    19    28    46    28   216 0.85 AAA domain
RNA_helicase         PF00910.17   107 sp|Q0WJE4|THIQ_YERPE -            236      0.13   12.4   0.0   1   1    0.0016      0.87    9.7   0.0     2    34    29    64    28    81 0.73 RNA helicase
Miro                 PF08477.8    119 sp|Q0WJE4|THIQ_YERPE -            236      0.18   12.3   0.0   1   1   0.00052      0.28   11.6   0.0     1    21    27    47    27    82 0.86 Miro-like protein
NACHT                PF05729.7    166 sp|Q0WJE4|THIQ_YERPE -            236      0.18   11.4   1.6   1   1   0.00049      0.27   10.8   0.1     2    21    27    46    26    55 0.87 NACHT domain
AAA_24               PF13479.1    213 sp|Q0WJE4|THIQ_YERPE -            236       0.2   11.2   0.1   1   1   0.00072       0.4   10.2   0.0     5    21    27    43    25    62 0.91 AAA domain
Trigger_N            PF05697.8    145 sp|Q8ZC64|TIG_YERPE  -            434     2e-48  163.8   1.5   1   3   4.1e-52     2e-48  163.8   1.5     1   145     1   145     1   145 0.99 Bacterial trigger factor protein (TF)
Trigger_C            PF05698.9    162 sp|Q8ZC64|TIG_YERPE  -            434     7e-39  133.2   7.6   3   3   1.4e-42     7e-39  133.2   7.6     1   161   262   412   262   413 0.99 Bacterial trigger factor protein (TF) C-terminus
FKBP_C               PF00254.23    94 sp|Q8ZC64|TIG_YERPE  -            434   6.4e-16   58.1   0.2   1   1   3.5e-19   1.7e-15   56.7   0.2     4    92   157   236   154   240 0.92 FKBP-type peptidyl-prolyl cis-trans isomerase
ATP_bind_3           PF01171.15   182 sp|Q8ZH50|TILS_YERPE -            460   7.8e-57  191.7   0.3   1   1   5.4e-60   1.3e-56  190.9   0.1     1   181    24   203    24   204 0.96 PP-loop family
TilS_C               PF11734.3     74 sp|Q8ZH50|TILS_YERPE -            460   8.2e-26   89.0   0.5   1   1     7e-29   1.7e-25   88.0   0.5     1    74   381   453   381   453 0.97 TilS substrate C-terminal domain
TilS                 PF09179.6     69 sp|Q8ZH50|TILS_YERPE -            460   4.1e-23   81.1   6.4   1   1     5e-26   1.2e-22   79.6   6.4     1    69   252   320   252   320 0.99 TilS substrate binding domain
PAPS_reduct          PF01507.14   174 sp|Q8ZH50|TILS_YERPE -            460    0.0012   18.7   0.0   1   1   1.3e-06    0.0033   17.2   0.0     3    82    26   114    24   218 0.81 Phosphoadenosine phosphosulfate reductase family
NAD_synthase         PF02540.12   242 sp|Q8ZH50|TILS_YERPE -            460    0.0019   17.1   0.0   1   1   1.5e-06    0.0037   16.1   0.0    18   107    22   119    12   137 0.81 NAD synthase
Asn_synthase         PF00733.16   255 sp|Q8ZH50|TILS_YERPE -            460    0.0064   16.0   0.0   1   1   4.3e-06     0.011   15.2   0.0    13    88    18   132     9   156 0.58 Asparagine synthase
PD40                 PF07676.7     39 sp|Q8ZGZ1|TOLB_YERPE -            430   1.5e-35  120.2   4.6   1   6   1.6e-08   4.1e-05   23.1   0.1     9    34   200   223   197   226 0.83 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|Q8ZGZ1|TOLB_YERPE -            430   1.5e-35  120.2   4.6   2   6   2.2e-12   5.5e-09   35.5   0.0     2    39   237   272   236   272 0.94 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|Q8ZGZ1|TOLB_YERPE -            430   1.5e-35  120.2   4.6   3   6   8.7e-13   2.2e-09   36.7   0.2     3    38   282   315   280   316 0.95 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|Q8ZGZ1|TOLB_YERPE -            430   1.5e-35  120.2   4.6   5   6   1.3e-05     0.031   13.9   0.0     5    33   371   398   367   400 0.81 WD40-like Beta Propeller Repeat
TolB_N               PF04052.8    105 sp|Q8ZGZ1|TOLB_YERPE -            430   5.7e-33  113.1   0.0   1   1   5.8e-36   1.4e-32  111.8   0.0     1   100    23   122    23   126 0.97 TolB amino-terminal domain
DPPIV_N              PF00930.16   353 sp|Q8ZGZ1|TOLB_YERPE -            430   1.9e-13   49.7   0.0   1   3   9.6e-05      0.24    9.9   0.0    43    61   200   218   177   241 0.75 Dipeptidyl peptidase IV (DPP IV) N-terminal region
DPPIV_N              PF00930.16   353 sp|Q8ZGZ1|TOLB_YERPE -            430   1.9e-13   49.7   0.0   2   3   1.4e-12   3.5e-09   35.7   0.0   240   348   249   352   221   357 0.88 Dipeptidyl peptidase IV (DPP IV) N-terminal region
Pectate_lyase22      PF14583.1    386 sp|Q8ZGZ1|TOLB_YERPE -            430   1.8e-10   39.8   0.0   2   4     1e-07   0.00025   19.6   0.0    42    83   250   291   244   292 0.96 Oligogalacturonate lyase
Peptidase_S9_N       PF02897.10   414 sp|Q8ZGZ1|TOLB_YERPE -            430   2.3e-05   23.1   0.0   2   2   2.6e-08   6.3e-05   21.7   0.0   130   256   250   360   245   404 0.82 Prolyl oligopeptidase, N-terminal beta-propeller domain
TIM                  PF00121.13   244 sp|Q8ZJK9|TPIS_YERPE -            255     1e-92  309.6   0.7   1   1   7.6e-97   1.1e-92  309.4   0.7     1   243     4   245     4   246 0.97 Triosephosphate isomerase
Redoxin              PF08534.5    146 sp|Q8ZE42|TPX_YERPE  -            167   1.7e-27   95.7   0.0   1   1   2.7e-31     2e-27   95.5   0.0     2   146    21   163    20   163 0.96 Redoxin
AhpC-TSA             PF00578.16   124 sp|Q8ZE42|TPX_YERPE  -            167   1.6e-16   60.0   0.0   1   1   2.6e-20   1.9e-16   59.8   0.0     1   123    21   146    21   147 0.93 AhpC/TSA family
tRNA_U5-meth_tr      PF05958.6    352 sp|Q8ZAA0|TRMA_YERPE -            367  4.8e-191  633.9   0.5   1   1  5.5e-194  5.4e-191  633.8   0.5     1   352    10   366    10   366 0.99 tRNA (Uracil-5-)-methyltransferase
Methyltransf_4       PF02390.12   197 sp|Q8ZAA0|TRMA_YERPE -            367   5.7e-07   28.7   0.1   1   1   1.1e-09   1.1e-06   27.8   0.1    22    87   213   276   179   285 0.83 Putative methyltransferase
Methyltransf_26      PF13659.1    117 sp|Q8ZAA0|TRMA_YERPE -            367   1.9e-06   27.8   0.0   1   1   4.4e-09   4.4e-06   26.7   0.0     4    68   214   276   211   328 0.80 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZAA0|TRMA_YERPE -            367     6e-06   25.7   0.0   1   1   1.1e-08     1e-05   24.9   0.0    31    89   210   266   198   281 0.86 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|Q8ZAA0|TRMA_YERPE -            367   1.1e-05   25.9   0.0   1   1   2.4e-08   2.4e-05   24.8   0.0     3    64   212   269   210   341 0.78 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|Q8ZAA0|TRMA_YERPE -            367   1.1e-05   24.9   0.3   1   1     4e-08   3.9e-05   23.1   0.3    41   115   209   280   192   347 0.76 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|Q8ZAA0|TRMA_YERPE -            367   1.4e-05   24.7   0.0   1   1   2.5e-08   2.5e-05   23.9   0.0     6    69   213   273   209   343 0.90 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|Q8ZAA0|TRMA_YERPE -            367   0.00065   19.2   0.0   1   1   1.1e-06    0.0011   18.5   0.0     4    85   214   307   211   319 0.84 RNA cap guanine-N2 methyltransferase
Met_10               PF02475.11   200 sp|Q8ZAA0|TRMA_YERPE -            367    0.0012   18.4   0.0   1   1   1.8e-06    0.0017   17.9   0.0   106   166   215   272   207   345 0.83 Met-10+ like-protein
PrmA                 PF06325.8    295 sp|Q8ZAA0|TRMA_YERPE -            367    0.0047   16.1   0.2   1   1   8.2e-06    0.0081   15.3   0.2   157   223   206   271   192   278 0.79 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_11      PF08241.7     95 sp|Q8ZAA0|TRMA_YERPE -            367    0.0061   17.0   0.0   1   1   1.5e-05     0.014   15.8   0.0     2    53   216   269   215   275 0.89 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|Q8ZAA0|TRMA_YERPE -            367      0.04   12.9   0.0   1   1   6.3e-05     0.062   12.3   0.0    30    81   210   263   185   276 0.81 Ribosomal RNA adenine dimethylase
Methyltransf_25      PF13649.1    101 sp|Q8ZAA0|TRMA_YERPE -            367     0.067   13.5   0.0   1   1   0.00016      0.15   12.4   0.0     2    65   215   274   214   283 0.92 Methyltransferase domain
DREV                 PF05219.7    265 sp|Q8ZAA0|TRMA_YERPE -            367     0.083   11.7   0.0   1   1   0.00015      0.15   10.9   0.0    94   126   210   242   179   263 0.80 DREV methyltransferase
Methyltransf_12      PF08242.7     99 sp|Q8ZAA0|TRMA_YERPE -            367     0.088   13.2   0.0   1   1   0.00018      0.18   12.3   0.0     1    57   215   269   215   308 0.87 Methyltransferase domain
Methyltransf_4       PF02390.12   197 sp|Q8ZHE9|TRMB_YERPE -            239   5.1e-65  218.2   0.0   1   1   2.4e-68     6e-65  217.9   0.0     4   196    48   237    42   238 0.95 Putative methyltransferase
Methyltransf_26      PF13659.1    117 sp|Q8ZHE9|TRMB_YERPE -            239   3.5e-06   27.0   0.0   1   1   4.2e-09     1e-05   25.5   0.0     4   115    67   179    64   181 0.82 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q8ZHE9|TRMB_YERPE -            239   0.00016   21.1   0.0   1   1   8.8e-08   0.00022   20.6   0.0    32   155    64   193    51   207 0.82 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|Q8ZHE9|TRMB_YERPE -            239   0.00019   21.9   0.0   2   2   4.1e-07     0.001   19.6   0.0     5   110    67   178    63   180 0.77 Methyltransferase domain
Methyltransf_3       PF01596.12   205 sp|Q8ZHE9|TRMB_YERPE -            239      0.14   11.1   0.0   1   1   6.4e-05      0.16   11.0   0.0    46   128    64   144    29   212 0.83 O-methyltransferase
Spermine_synth       PF01564.12   246 sp|Q8ZHE9|TRMB_YERPE -            239      0.15   10.9   0.0   1   1   8.6e-05      0.21   10.4   0.0   133   197   116   186   107   206 0.86 Spermine/spermidine synthase
tRNA_m1G_MT          PF01746.16   186 sp|Q8ZBU9|TRMD_YERPE -            246   1.7e-57  194.0   0.0   1   1   1.3e-61     2e-57  193.8   0.0     2   186    23   221    22   221 0.98 tRNA (Guanine-1)-methyltransferase
SpoU_methylase       PF00588.14   142 sp|Q7CJN8|TRMJ_YERPE -            257   1.4e-32  112.5   0.0   1   2   9.1e-36   4.5e-32  110.8   0.0     2   142     5   154     4   154 0.89 SpoU rRNA Methylase family
Methyltrn_RNA_4      PF09936.4    185 sp|Q7CJN8|TRMJ_YERPE -            257     0.022   14.2   0.0   2   2   0.00019      0.93    8.9   0.0   105   178    74   152    53   157 0.72 SAM-dependent RNA methyltransferase
AAA_27               PF13514.1   1111 sp|Q7CJN8|TRMJ_YERPE -            257     0.028   12.1   0.1   1   1   7.4e-06     0.036   11.7   0.1   755   816   180   240   154   246 0.89 AAA domain
SpoU_methylase       PF00588.14   142 sp|Q74Y93|TRML_YERPE -            162   1.5e-33  115.6   0.0   1   1   2.3e-37   1.7e-33  115.4   0.0     1   142     1   147     1   147 0.92 SpoU rRNA Methylase family
Malate_DH            PF12434.3     28 sp|Q74Y93|TRML_YERPE -            162    0.0015   18.2   0.4   1   1   4.4e-07    0.0033   17.0   0.4    17    27    44    54    42    54 0.96 Malate dehydrogenase enzyme
Methyltransf_26      PF13659.1    117 sp|Q74SR9|TRMN6_YERPE -            252   5.6e-22   77.9   0.1   1   1   1.6e-24   8.2e-22   77.4   0.1     2   116    53   177    52   178 0.91 Methyltransferase domain
MTS                  PF05175.9    170 sp|Q74SR9|TRMN6_YERPE -            252     1e-16   60.7   0.0   1   1   2.8e-19   1.5e-16   60.2   0.0    26   149    46   185    33   200 0.85 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|Q74SR9|TRMN6_YERPE -            252   2.7e-14   53.6   0.0   1   1   7.9e-17   4.2e-14   53.0   0.0     3    80    53   149    51   177 0.73 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q74SR9|TRMN6_YERPE -            252   1.5e-13   50.6   0.0   1   1   3.9e-16     2e-13   50.1   0.0     5   112    53   178    51   212 0.84 Methyltransferase domain
PrmA                 PF06325.8    295 sp|Q74SR9|TRMN6_YERPE -            252   1.7e-09   37.2   0.0   1   1   4.7e-12   2.5e-09   36.7   0.0   161   232    51   129    43   137 0.85 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25      PF13649.1    101 sp|Q74SR9|TRMN6_YERPE -            252     3e-08   33.9   0.0   1   1   8.5e-11   4.5e-08   33.3   0.0     1    80    55   132    55   163 0.80 Methyltransferase domain
UPF0020              PF01170.13   180 sp|Q74SR9|TRMN6_YERPE -            252   9.3e-08   31.8   0.0   1   1   2.7e-10   1.4e-07   31.2   0.0    32   116    55   132    49   149 0.84 Putative RNA methylase family UPF0020
Methyltransf_23      PF13489.1    161 sp|Q74SR9|TRMN6_YERPE -            252   9.6e-08   31.9   0.0   1   1   4.8e-10   2.5e-07   30.5   0.0    24    85    53   129    30   130 0.88 Methyltransferase domain
Methyltransf_3       PF01596.12   205 sp|Q74SR9|TRMN6_YERPE -            252   6.8e-06   25.2   0.0   1   1     2e-08     1e-05   24.6   0.0    26   111    33   117    22   128 0.85 O-methyltransferase
Methyltransf_12      PF08242.7     99 sp|Q74SR9|TRMN6_YERPE -            252   1.5e-05   25.3   0.0   1   1   4.2e-08   2.2e-05   24.8   0.0     1    73    56   129    56   171 0.88 Methyltransferase domain
PCMT                 PF01135.14   210 sp|Q74SR9|TRMN6_YERPE -            252   2.5e-05   23.9   0.0   1   1   6.8e-08   3.6e-05   23.3   0.0    68   142    46   120    40   131 0.84 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_11      PF08241.7     95 sp|Q74SR9|TRMN6_YERPE -            252   8.5e-05   22.9   0.0   1   1   3.9e-07    0.0002   21.7   0.0     1    67    56   129    56   131 0.86 Methyltransferase domain
Methyltransf_10      PF05971.7    299 sp|Q74SR9|TRMN6_YERPE -            252   9.8e-05   21.6   0.0   1   1   2.3e-07   0.00012   21.3   0.0   103   204    52   149    41   196 0.81 Protein of unknown function (DUF890)
Cons_hypoth95        PF03602.10   183 sp|Q74SR9|TRMN6_YERPE -            252   0.00012   21.4   0.0   1   1   3.5e-07   0.00019   20.9   0.0    41   146    50   156    42   169 0.78 Conserved hypothetical protein 95
N6_Mtase             PF02384.11   311 sp|Q74SR9|TRMN6_YERPE -            252   0.00015   20.9   0.0   1   1   3.5e-07   0.00019   20.6   0.0    48   151    53   149    42   179 0.78 N-6 DNA Methylase
CMAS                 PF02353.15   273 sp|Q74SR9|TRMN6_YERPE -            252    0.0003   19.9   0.0   1   1     8e-07   0.00042   19.4   0.0    64   133    53   128    47   196 0.87 Mycolic acid cyclopropane synthetase
Met_10               PF02475.11   200 sp|Q74SR9|TRMN6_YERPE -            252   0.00063   19.3   0.0   1   1   1.7e-06    0.0009   18.8   0.0   104   181    54   134    48   148 0.90 Met-10+ like-protein
Methyltransf_4       PF02390.12   197 sp|Q74SR9|TRMN6_YERPE -            252    0.0019   17.2   0.0   1   1     5e-06    0.0026   16.8   0.0    22    87    54   121    22   127 0.87 Putative methyltransferase
Methyltransf_16      PF10294.4    174 sp|Q74SR9|TRMN6_YERPE -            252    0.0022   17.4   0.0   1   1   6.6e-06    0.0035   16.8   0.0    47   125    52   127    44   139 0.83 Putative methyltransferase
Methyltransf_32      PF13679.1    141 sp|Q74SR9|TRMN6_YERPE -            252    0.0031   17.2   0.0   1   1     8e-06    0.0043   16.7   0.0    26    96    52   117    48   169 0.82 Methyltransferase domain
MetW                 PF07021.7    193 sp|Q74SR9|TRMN6_YERPE -            252    0.0038   16.6   0.0   1   1   1.1e-05    0.0057   16.0   0.0    14    80    52   127    39   131 0.68 Methionine biosynthesis protein MetW
PRMT5                PF05185.11   448 sp|Q74SR9|TRMN6_YERPE -            252    0.0068   15.3   0.0   1   1   1.7e-05    0.0091   14.9   0.0   204   264    66   128    50   129 0.86 PRMT5 arginine-N-methyltransferase
RrnaAD               PF00398.15   262 sp|Q74SR9|TRMN6_YERPE -            252    0.0085   15.1   0.0   1   1   2.4e-05     0.013   14.5   0.0    32   107    53   132    44   136 0.92 Ribosomal RNA adenine dimethylase
NodS                 PF05401.6    201 sp|Q74SR9|TRMN6_YERPE -            252     0.013   14.8   0.0   1   1   3.9e-05     0.021   14.2   0.0    46   112    54   128    49   134 0.78 Nodulation protein S (NodS)
TehB                 PF03848.9    192 sp|Q74SR9|TRMN6_YERPE -            252     0.013   14.6   0.0   1   1   3.8e-05      0.02   14.0   0.0    26   100    47   128    30   132 0.67 Tellurite resistance protein TehB
Methyltransf_24      PF13578.1    106 sp|Q74SR9|TRMN6_YERPE -            252     0.035   14.9   0.0   1   1   0.00011     0.056   14.2   0.0     2    74    57   127    56   156 0.82 Methyltransferase domain
Methyltransf_9       PF08003.6    315 sp|Q74SR9|TRMN6_YERPE -            252      0.13   10.9   0.0   1   1   0.00032      0.17   10.5   0.0   111   147    47    82    41   123 0.86 Protein of unknown function (DUF1698)
FtsJ                 PF01728.14   181 sp|Q74SR9|TRMN6_YERPE -            252      0.16   11.9   0.0   1   1   0.00037       0.2   11.6   0.0    23   138    51   175    23   224 0.80 FtsJ-like methyltransferase
Trp_syntA            PF00290.15   259 sp|Q8ZEH0|TRPA_YERPE -            268     7e-96  319.7   0.0   1   1   1.1e-99   7.9e-96  319.5   0.0     1   258     8   266     8   267 0.99 Tryptophan synthase alpha chain
His_biosynth         PF00977.16   229 sp|Q8ZEH0|TRPA_YERPE -            268     0.064   12.5   0.0   2   2   2.5e-05      0.19   10.9   0.0    56   107   188   239   180   248 0.86 Histidine biosynthesis protein
PALP                 PF00291.20   306 sp|Q8ZEG9|TRPB_YERPE -            396   3.6e-46  157.8   0.1   1   1     3e-50   4.4e-46  157.5   0.1     4   306    52   377    49   377 0.78 Pyridoxal-phosphate dependent enzyme
IGPS                 PF00218.16   254 sp|Q8ZEG8|TRPC_YERPE -            475   1.3e-94  316.0   0.3   1   2   4.6e-98   2.3e-94  315.2   0.0     1   253    28   274    28   275 0.99 Indole-3-glycerol phosphate synthase
PRAI                 PF00697.17   197 sp|Q8ZEG8|TRPC_YERPE -            475   4.8e-55  186.1   0.0   1   1   1.5e-58   7.6e-55  185.5   0.0     1   197   280   471   280   471 0.98 N-(5'phosphoribosyl)anthranilate (PRA) isomerase
QRPTase_C            PF01729.14   169 sp|Q8ZEG8|TRPC_YERPE -            475     0.053   13.0   0.0   2   2   4.4e-05      0.22   11.0   0.0    68   148   167   253   156   270 0.79 Quinolinate phosphoribosyl transferase, C-terminal domain
Glycos_transf_3      PF00591.16   253 sp|Q8ZEG7|TRPD_YERPE -            333  1.1e-101  339.5   0.0   1   1  3.2e-105  1.6e-101  338.9   0.0     4   252    75   322    72   323 0.99 Glycosyl transferase family, a/b domain
Glycos_trans_3N      PF02885.12    66 sp|Q8ZEG7|TRPD_YERPE -            333   1.4e-17   63.0   3.5   1   1   4.6e-21   2.3e-17   62.3   2.0     1    65     1    65     1    66 0.96 Glycosyl transferase family, helical bundle domain
DUF3356              PF11836.3    101 sp|Q8ZEG7|TRPD_YERPE -            333      0.25   11.1   5.0   1   2   0.00014      0.71    9.7   0.2    38    96     5    65     2    68 0.93 Protein of unknown function (DUF3356)
Trp_repressor        PF01371.14    88 sp|P58700|TRPR_YERPE -            125   1.2e-30  105.2   0.1   1   1     1e-34   1.5e-30  104.9   0.1     1    87    33   119    33   120 0.98 Trp repressor protein
PseudoU_synth_1      PF01416.15   105 sp|Q8ZD27|TRUA_YERPE -            264   7.6e-32  109.8   0.0   1   2   1.6e-15     8e-12   45.5   0.0     3   105     7   103     5   103 0.93 tRNA pseudouridine synthase
PseudoU_synth_1      PF01416.15   105 sp|Q8ZD27|TRUA_YERPE -            264   7.6e-32  109.8   0.0   2   2   7.7e-21   3.8e-17   62.6   0.0     2   105   143   244   142   244 0.96 tRNA pseudouridine synthase
SUD-M                PF11633.3    142 sp|Q8ZD27|TRUA_YERPE -            264     0.019   14.2   0.1   1   2   4.7e-05      0.23   10.7   0.0    65   107     8    50     3    68 0.88 Single-stranded poly(A) binding domain
DUF3713              PF12506.3    116 sp|Q8ZD27|TRUA_YERPE -            264      0.22   11.5   0.0   1   1     8e-05       0.4   10.7   0.0    76   110    67   101    59   104 0.89 Protein of unknown function (DUF3713)
TruB_N               PF01509.13   149 sp|Q8ZBC4|TRUB_YERPE -            324   6.4e-58  195.1   0.0   1   1   1.3e-61   9.8e-58  194.5   0.0     1   149    33   180    33   180 0.99 TruB family pseudouridylate synthase (N terminal domain)
TruB-C_2             PF09157.6     58 sp|Q8ZBC4|TRUB_YERPE -            324   3.4e-21   74.8   0.1   1   1   1.4e-24   1.1e-20   73.2   0.1     1    58   252   309   252   309 0.97 Pseudouridine synthase II TruB, C-terminal
PseudoU_synth_2      PF00849.17   164 sp|Q8ZH72|TRUC_YERPE -            257     7e-34  117.0   0.1   1   1   5.9e-38   8.8e-34  116.7   0.1     1   164    10   170    10   170 0.95 RNA pseudouridylate synthase
TruD                 PF01142.13   378 sp|Q8ZBP8|TRUD_YERPE -            349  1.6e-111  372.6   0.1   1   1    1e-114  1.5e-110  369.4   0.1     5   378     2   336     1   336 0.96 tRNA pseudouridine synthase D (TruD)
Sua5_yciO_yrdC       PF01300.13   179 sp|Q74XX5|TSAC_YERPE -            190   5.7e-43  146.2   0.0   1   1   4.2e-47   6.2e-43  146.1   0.0     2   169    16   182    15   190 0.91 Telomere recombination
Peptidase_M22        PF00814.20   268 sp|Q74RQ9|TSAD_YERPE -            337  8.2e-102  340.2   0.0   1   1  3.2e-105  9.4e-102  340.0   0.0     2   268    24   307    23   307 0.98 Glycoprotease family
BcrAD_BadFG          PF01869.15   271 sp|Q74RQ9|TSAD_YERPE -            337    0.0076   15.5   0.0   2   2   2.5e-05     0.074   12.3   0.0   177   251   214   290   186   304 0.85 BadF/BadG/BcrA/BcrD ATPase family
CmcH_NodU            PF02543.10   360 sp|Q74RQ9|TSAD_YERPE -            337     0.018   14.1   0.0   1   1   8.5e-06     0.025   13.7   0.0   134   185   227   281   208   321 0.77 Carbamoyltransferase
FGGY_C               PF02782.11   198 sp|Q74RQ9|TSAD_YERPE -            337     0.021   14.4   0.1   1   1   1.3e-05     0.037   13.6   0.1    95   175   211   285   151   310 0.74 FGGY family of carbohydrate kinases, C-terminal domain
TrwC                 PF08751.6    297 sp|Q74RQ9|TSAD_YERPE -            337      0.18   11.2   0.0   1   1   6.6e-05      0.19   11.0   0.0    79   127   185   254    38   264 0.75 TrwC relaxase
MFS_1                PF07690.11   352 sp|Q8ZJE6|TSGA_YERPE -            394   2.5e-21   75.7  48.0   1   2     5e-25   2.5e-21   75.7  48.0     3   325    15   321     9   328 0.83 Major Facilitator Superfamily
DUF4526              PF15029.1    232 sp|Q8ZJE6|TSGA_YERPE -            394      0.11   12.0   1.4   1   1   3.9e-05      0.19   11.2   1.4    21    95   123   195   100   236 0.85 Protein of unknown function (DUF4526)
7TMR-DISM_7TM        PF07695.6    205 sp|Q8ZJE6|TSGA_YERPE -            394       3.2    7.3  60.7   1   2   0.00012      0.61    9.7  27.5    29   190    12   170     7   184 0.74 7TM diverse intracellular signalling
ATP_bind_3           PF01171.15   182 sp|Q7CIP8|TTCA_YERPE -            313   8.9e-14   51.3   0.0   1   1   1.3e-17   1.9e-13   50.3   0.0     2   160    42   204    41   210 0.84 PP-loop family
TusA                 PF01206.12    70 sp|Q8ZAI0|TUSA_YERPE -             84   3.8e-27   93.6   0.1   1   1   5.8e-31   4.3e-27   93.5   0.1     1    70    10    79    10    79 0.99 Sulfurtransferase TusA
DUF2249              PF10006.4     69 sp|Q8ZAI0|TUSA_YERPE -             84   0.00052   19.5   0.3   1   2   1.2e-07    0.0009   18.7   0.1     1    34    11    44    11    47 0.97 Uncharacterized conserved protein (DUF2249)
DsrH                 PF04077.7     88 sp|Q8ZJB6|TUSB_YERPE -             95   1.2e-28   98.6   0.2   1   1   8.7e-33   1.3e-28   98.4   0.2     1    87     7    92     7    93 0.99 DsrH like protein
DrsE                 PF02635.10   122 sp|Q8ZJB7|TUSC_YERPE -            121   5.7e-20   71.5   0.0   1   1   4.3e-24   6.3e-20   71.4   0.0     1   122     4   121     4   121 0.95 DsrE/DsrF-like family
DrsE                 PF02635.10   122 sp|Q8ZJB8|TUSD_YERPE -            131   1.8e-24   86.1   0.4   1   1   1.4e-28     2e-24   85.9   0.4     2   122     5   131     4   131 0.93 DsrE/DsrF-like family
DsrC                 PF04358.8    109 sp|Q8ZG65|TUSE_YERPE -            109   6.1e-47  158.3   0.0   1   1     9e-51   6.7e-47  158.2   0.0     2   109     2   109     1   109 0.99 DsrC like protein
SseB_C               PF14581.1    109 sp|Q8ZG65|TUSE_YERPE -            109     0.022   14.5   0.0   1   1   3.7e-06     0.027   14.3   0.0     4    46    32    77    29    99 0.83 SseB protein C-terminal domain
Ter                  PF05472.6    290 sp|Q9L6X9|TUS_YERPE  -            311  2.4e-110  368.2   4.9   1   1  1.8e-114  2.6e-110  368.0   4.9     1   290     8   307     8   307 0.99 DNA replication terminus site-binding protein (Ter protein)
TyeA                 PF09059.5     87 sp|P69968|TYEA_YERPE -             92   2.3e-42  142.8   0.2   1   1   1.7e-46   2.6e-42  142.6   0.2     1    87     1    87     1    87 0.99 TyeA
Glycos_transf_3      PF00591.16   253 sp|Q74PY8|TYPH_YERPE -            440     2e-47  161.7   1.0   1   2     4e-51     2e-47  161.7   1.0     2   252    79   309    78   310 0.98 Glycosyl transferase family, a/b domain
PYNP_C               PF07831.8     75 sp|Q74PY8|TYPH_YERPE -            440   5.3e-24   83.4   0.2   1   1   2.2e-27   1.1e-23   82.4   0.2     2    74   351   423   350   424 0.97 Pyrimidine nucleoside phosphorylase C-terminal domain
Glycos_trans_3N      PF02885.12    66 sp|Q74PY8|TYPH_YERPE -            440   7.4e-15   54.2   0.0   1   1   3.5e-18   1.8e-14   53.0   0.0     3    66     5    68     3    68 0.98 Glycosyl transferase family, helical bundle domain
Thymidylat_synt      PF00303.14   269 sp|Q8ZHV1|TYSY_YERPE -            264  6.3e-121  402.4   0.0   1   1  4.7e-125    7e-121  402.3   0.0     2   269     2   264     1   264 0.99 Thymidylate synthase
UbiA                 PF01040.13   257 sp|Q7CKP5|UBIA_YERPE -            288   3.7e-40  137.7  22.9   1   1     3e-44   4.4e-40  137.5  22.9     3   255    27   276    25   284 0.86 UbiA prenyltransferase family
ABC1                 PF03109.11   119 sp|Q8ZAM1|UBIB_YERPE -            543   1.3e-34  118.7   0.0   1   1     3e-38   2.2e-34  117.9   0.0     3   119   113   231   111   231 0.98 ABC1 family
RIO1                 PF01163.17   189 sp|Q8ZAM1|UBIB_YERPE -            543     0.061   12.6   0.0   1   1   1.5e-05      0.11   11.8   0.0    71   144   226   299   204   340 0.89 RIO1 family
Chor_lyase           PF04345.8    168 sp|Q8ZJ20|UBIC_YERPE -            174   6.9e-34  116.6   0.0   1   1     1e-37   7.7e-34  116.5   0.0     5   165    12   168     8   171 0.92 Chorismate lyase
UbiD                 PF01977.11   407 sp|Q0WAP0|UBID_YERPE -            498  1.7e-166  553.7   0.0   1   1  1.3e-170  1.9e-166  553.5   0.0     1   407    13   437    13   437 0.96 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Ubie_methyltran      PF01209.13   233 sp|Q8D1I3|UBIE_YERPE -            251  5.6e-107  356.1   0.0   1   1  6.4e-110  6.3e-107  355.9   0.0     2   233    15   250    14   250 0.98 ubiE/COQ5 methyltransferase family
Methyltransf_31      PF13847.1    152 sp|Q8D1I3|UBIE_YERPE -            251   6.5e-22   77.7   0.0   1   1   8.9e-25   8.8e-22   77.3   0.0     3   113    63   179    61   235 0.82 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q8D1I3|UBIE_YERPE -            251   3.8e-21   75.3   0.0   1   1   6.7e-24   6.6e-21   74.6   0.0     1    94    68   167    68   168 0.97 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|Q8D1I3|UBIE_YERPE -            251   6.8e-18   64.8   0.0   1   1   9.5e-21   9.4e-18   64.4   0.0    20   160    61   234    45   235 0.87 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q8D1I3|UBIE_YERPE -            251   2.5e-17   63.0   0.0   1   1   5.3e-20   5.3e-17   62.0   0.0     1   101    67   164    67   164 0.92 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8D1I3|UBIE_YERPE -            251   6.1e-14   52.5   0.0   1   1   1.1e-16   1.1e-13   51.7   0.0     2   109    64   168    63   171 0.89 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q8D1I3|UBIE_YERPE -            251   6.4e-13   49.0   0.0   1   1   1.1e-15   1.1e-12   48.2   0.0     1    99    68   166    68   166 0.89 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8D1I3|UBIE_YERPE -            251   2.8e-09   37.0   0.0   1   1   5.9e-12   5.8e-09   35.9   0.0     1   114    64   169    64   171 0.91 Methyltransferase domain
PCMT                 PF01135.14   210 sp|Q8D1I3|UBIE_YERPE -            251   4.3e-08   32.9   0.0   1   1   6.8e-11   6.7e-08   32.3   0.0    71   171    61   168    52   177 0.88 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
MTS                  PF05175.9    170 sp|Q8D1I3|UBIE_YERPE -            251   1.5e-05   24.4   0.0   1   1   2.5e-08   2.4e-05   23.7   0.0    31   138    63   168    53   187 0.84 Methyltransferase small domain
UPF0020              PF01170.13   180 sp|Q8D1I3|UBIE_YERPE -            251    0.0018   17.8   0.0   1   1   4.9e-06    0.0048   16.4   0.0    24   111    59   138    53   162 0.71 Putative RNA methylase family UPF0020
MetW                 PF07021.7    193 sp|Q8D1I3|UBIE_YERPE -            251    0.0034   16.8   0.0   1   1   5.9e-06    0.0059   16.0   0.0    11   102    61   160    53   169 0.78 Methionine biosynthesis protein MetW
GCD14                PF08704.5    247 sp|Q8D1I3|UBIE_YERPE -            251     0.015   14.7   0.0   1   2   0.00011      0.11   12.0   0.0    38    99    61   122    54   141 0.89 tRNA methyltransferase complex GCD14 subunit
RrnaAD               PF00398.15   262 sp|Q8D1I3|UBIE_YERPE -            251     0.027   13.5   0.0   1   1   3.7e-05     0.037   13.0   0.0    23    91    56   130    47   165 0.82 Ribosomal RNA adenine dimethylase
Rsm22                PF09243.5    275 sp|Q8D1I3|UBIE_YERPE -            251     0.072   12.1   0.0   1   1   0.00013      0.13   11.2   0.0    36   121    65   151    24   170 0.86 Mitochondrial small ribosomal subunit Rsm22
Methyltransf_23      PF13489.1    161 sp|Q8ZGR6|UBIG_YERPE -            242   5.7e-25   87.8   0.0   1   1     1e-27   7.5e-25   87.5   0.0    24   121    58   165    25   204 0.79 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|Q8ZGR6|UBIG_YERPE -            242   5.3e-21   74.7   0.0   1   1     1e-23   7.4e-21   74.3   0.0     5   113    58   164    57   203 0.88 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|Q8ZGR6|UBIG_YERPE -            242   1.6e-19   70.2   0.0   1   1   3.1e-22   2.3e-19   69.6   0.0     1    95    61   157    61   157 0.96 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|Q8ZGR6|UBIG_YERPE -            242   3.1e-15   56.4   0.0   1   1   6.4e-18   4.8e-15   55.8   0.0     1    99    61   155    61   155 0.88 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|Q8ZGR6|UBIG_YERPE -            242     8e-15   55.3   0.0   1   1   1.7e-17   1.3e-14   54.7   0.0     2   111    57   159    57   160 0.90 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|Q8ZGR6|UBIG_YERPE -            242   2.2e-12   47.2   0.0   1   1   4.8e-15   3.5e-12   46.5   0.0     1   101    60   153    60   153 0.91 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|Q8ZGR6|UBIG_YERPE -            242   1.3e-09   38.1   0.1   1   1   3.8e-12   2.8e-09   37.0   0.1     2   115    58   159    57   161 0.89 Methyltransferase domain
CMAS                 PF02353.15   273 sp|Q8ZGR6|UBIG_YERPE -            242   4.1e-09   35.9   0.0   1   1   7.1e-12   5.3e-09   35.5   0.0    64   193    58   184    43   219 0.81 Mycolic acid cyclopropane synthetase
NodS                 PF05401.6    201 sp|Q8ZGR6|UBIG_YERPE -            242   7.9e-09   35.2   0.0   1   1   1.3e-11   9.5e-09   34.9   0.0    45   168    58   181    11   191 0.82 Nodulation protein S (NodS)
Ubie_methyltran      PF01209.13   233 sp|Q8ZGR6|UBIG_YERPE -            242   3.8e-08   32.7   0.0   1   1     6e-11   4.5e-08   32.5   0.0    38   158    47   164    10   186 0.82 ubiE/COQ5 methyltransferase family
MTS                  PF05175.9    170 sp|Q8ZGR6|UBIG_YERPE -            242   8.1e-08   31.8   0.0   1   1   1.6e-10   1.2e-07   31.2   0.0    31   104    56   128    45   165 0.87 Methyltransferase small domain
PrmA                 PF06325.8    295 sp|Q8ZGR6|UBIG_YERPE -            242   4.1e-07   29.4   0.0   1   1   7.7e-10   5.7e-07   28.9   0.0   162   264    57   164    48   181 0.80 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_9       PF08003.6    315 sp|Q8ZGR6|UBIG_YERPE -            242   0.00023   19.9   0.1   1   1   4.1e-07    0.0003   19.5   0.1   115   220    56   160    44   180 0.77 Protein of unknown function (DUF1698)
MetW                 PF07021.7    193 sp|Q8ZGR6|UBIG_YERPE -            242   0.00045   19.6   0.0   1   1   9.2e-07   0.00068   19.0   0.0    15    97    58   144    54   169 0.77 Methionine biosynthesis protein MetW
Methyltransf_32      PF13679.1    141 sp|Q8ZGR6|UBIG_YERPE -            242     0.001   18.7   0.0   1   1   1.7e-06    0.0012   18.4   0.0    27   105    58   128    46   215 0.84 Methyltransferase domain
GidB                 PF02527.10   184 sp|Q8ZGR6|UBIG_YERPE -            242    0.0066   15.5   0.1   1   1   3.4e-05     0.025   13.7   0.1    50   146    58   157    33   168 0.74 rRNA small subunit methyltransferase G
DREV                 PF05219.7    265 sp|Q8ZGR6|UBIG_YERPE -            242    0.0077   15.1   0.0   1   1   1.8e-05     0.013   14.3   0.0    91   187    53   158    40   164 0.74 DREV methyltransferase
TehB                 PF03848.9    192 sp|Q8ZGR6|UBIG_YERPE -            242     0.037   13.1   0.0   1   1     7e-05     0.052   12.7   0.0    31   102    57   128    48   167 0.75 Tellurite resistance protein TehB
TPMT                 PF05724.6    218 sp|Q8ZGR6|UBIG_YERPE -            242     0.059   12.8   0.0   1   1   0.00018      0.13   11.6   0.0    20    73    38    92    22   127 0.76 Thiopurine S-methyltransferase (TPMT)
AdoMet_MTase         PF07757.8    112 sp|Q8ZGR6|UBIG_YERPE -            242      0.11   12.6   0.0   1   1   0.00027       0.2   11.7   0.0    60    89    58    87    47   114 0.84 Predicted AdoMet-dependent methyltransferase
BPD_transp_1         PF00528.17   185 sp|Q7CKV6|UGPA_YERPE -            295   4.3e-19   68.7  19.9   2   2   2.9e-23   4.3e-19   68.7  19.9     1   184    86   293    86   294 0.91 Binding-protein-dependent transport system inner membrane component
SBP_bac_8            PF13416.1    281 sp|Q7CKV7|UGPB_YERPE -            439   3.4e-41  141.8   9.9   1   1   5.5e-45   4.1e-41  141.5   9.9     2   272    46   361    45   373 0.79 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|Q7CKV7|UGPB_YERPE -            439   1.5e-32  113.5   8.6   1   1     3e-36   2.2e-32  113.0   8.6    11   312    44   337    36   340 0.87 Bacterial extracellular solute-binding protein
ABC_tran             PF00005.22   137 sp|Q74R28|UGPC_YERPE -            357   1.1e-29  103.4   0.0   1   1   3.3e-32   1.8e-29  102.8   0.0     2   136    21   162    20   163 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|Q74R28|UGPC_YERPE -            357   1.3e-06   28.6   0.0   1   1   8.7e-07   0.00046   20.2   0.0     1   279    32   174    32   197 0.87 AAA domain
TOBE_2               PF08402.5     75 sp|Q74R28|UGPC_YERPE -            357   2.1e-05   24.4   0.0   1   1   1.3e-07   7.1e-05   22.7   0.0     1    75   278   347   278   347 0.90 TOBE domain
DUF258               PF03193.11   161 sp|Q74R28|UGPC_YERPE -            357   5.4e-05   22.4   0.0   1   1   1.8e-07   9.7e-05   21.6   0.0    27    67    21    62     4    69 0.82 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q74R28|UGPC_YERPE -            357   0.00043   20.1   0.2   1   1   1.2e-06   0.00065   19.5   0.2     2    25    33    53    32   204 0.85 AAA domain
AAA_16               PF13191.1    185 sp|Q74R28|UGPC_YERPE -            357   0.00068   19.6   0.6   1   1   4.5e-06    0.0024   17.8   0.6    23    52    29    59    22   207 0.48 AAA ATPase domain
AAA_17               PF13207.1    121 sp|Q74R28|UGPC_YERPE -            357    0.0026   18.5   0.0   1   1   8.5e-06    0.0045   17.8   0.0     2    47    33    79    32   170 0.71 AAA domain
AAA_22               PF13401.1    131 sp|Q74R28|UGPC_YERPE -            357    0.0052   16.9   0.0   1   1   2.7e-05     0.014   15.5   0.0     4    26    30    52    26    78 0.88 AAA domain
AAA_10               PF12846.2    304 sp|Q74R28|UGPC_YERPE -            357    0.0064   15.9   0.0   1   1   1.7e-05     0.009   15.4   0.0     4    37    33    66    31   189 0.71 AAA-like domain
AAA_29               PF13555.1     62 sp|Q74R28|UGPC_YERPE -            357     0.012   15.0   0.0   1   1   5.1e-05     0.027   14.0   0.0    19    40    27    47    19    51 0.81 P-loop containing region of AAA domain
Arch_ATPase          PF01637.13   234 sp|Q74R28|UGPC_YERPE -            357     0.016   14.9   0.0   1   1   4.3e-05     0.023   14.4   0.0    21    62    31    71    20   129 0.79 Archaeal ATPase
NACHT                PF05729.7    166 sp|Q74R28|UGPC_YERPE -            357     0.023   14.3   1.1   1   1   0.00011     0.056   13.1   0.1     3    21    33    51    31    58 0.89 NACHT domain
Rad17                PF03215.10   519 sp|Q74R28|UGPC_YERPE -            357     0.026   13.2   0.0   1   1   6.2e-05     0.033   12.8   0.0    38    67    23    52     4   110 0.78 Rad17 cell cycle checkpoint protein
AAA_28               PF13521.1    163 sp|Q74R28|UGPC_YERPE -            357     0.037   13.9   0.1   1   1   0.00017     0.089   12.7   0.1     2    22    33    53    32    65 0.84 AAA domain
AAA_14               PF13173.1    128 sp|Q74R28|UGPC_YERPE -            357     0.047   13.6   0.0   1   1   0.00017      0.09   12.6   0.0     3    27    31    55    29   130 0.75 AAA domain
AAA                  PF00004.24   132 sp|Q74R28|UGPC_YERPE -            357     0.051   13.7   0.0   1   1    0.0002       0.1   12.7   0.0     2    20    34    52    33   121 0.85 ATPase family associated with various cellular activities (AAA)
NB-ARC               PF00931.17   287 sp|Q74R28|UGPC_YERPE -            357     0.061   12.1   0.0   1   1   0.00023      0.12   11.2   0.0     5    39    16    50    13    60 0.84 NB-ARC domain
Miro                 PF08477.8    119 sp|Q74R28|UGPC_YERPE -            357     0.062   13.7   0.0   1   1   0.00026      0.14   12.6   0.0     2    25    33    56    33    91 0.83 Miro-like protein
AAA_25               PF13481.1    194 sp|Q74R28|UGPC_YERPE -            357     0.067   12.5   0.2   1   1   0.00031      0.16   11.3   0.0    30    50    27    47     8    67 0.85 AAA domain
MutS_V               PF00488.16   235 sp|Q74R28|UGPC_YERPE -            357     0.085   12.2   0.0   1   1   0.00036      0.19   11.1   0.0    24    64    11    51     5    55 0.86 MutS domain V
Mg_chelatase         PF01078.16   207 sp|Q74R28|UGPC_YERPE -            357     0.086   11.9   0.0   1   1   0.00029      0.15   11.1   0.0    15    46    23    54    13    94 0.79 Magnesium chelatase, subunit ChlI
RNA_helicase         PF00910.17   107 sp|Q74R28|UGPC_YERPE -            357      0.09   12.9   0.0   1   1   0.00034      0.18   11.9   0.0     1    18    33    50    33    71 0.74 RNA helicase
Zeta_toxin           PF06414.7    201 sp|Q74R28|UGPC_YERPE -            357      0.11   11.5   0.0   1   1   0.00047      0.25   10.4   0.0    18    37    32    51    26    63 0.87 Zeta toxin
MobB                 PF03205.9    140 sp|Q74R28|UGPC_YERPE -            357      0.12   12.0   0.1   1   1   0.00039      0.21   11.3   0.1     3    21    33    51    31    64 0.91 Molybdopterin guanine dinucleotide synthesis protein B
AAA_5                PF07728.9    139 sp|Q74R28|UGPC_YERPE -            357      0.13   11.9   0.4   1   1   0.00064      0.34   10.6   0.0     3    21    34    52    33    68 0.88 AAA domain (dynein-related subfamily)
AAA_23               PF13476.1    202 sp|Q74R28|UGPC_YERPE -            357      0.17   12.1   0.0   1   1   0.00057       0.3   11.3   0.0    14    37    22    48    11    53 0.81 AAA domain
BPD_transp_1         PF00528.17   185 sp|Q7CKV5|UGPE_YERPE -            281   2.4e-21   76.0  19.9   2   2   1.6e-25   2.4e-21   76.0  19.9     2   183    92   276    91   278 0.89 Binding-protein-dependent transport system inner membrane component
UDG                  PF03167.14   152 sp|Q8ZD85|UNG_YERPE  -            228   2.6e-28   98.4   0.1   1   1   2.2e-32   3.3e-28   98.0   0.1     6   152    54   211    50   211 0.96 Uracil DNA glycosylase superfamily
BacA                 PF02673.13   259 sp|Q8ZI65|UPPP_YERPE -            272     6e-88  294.3  16.2   1   1   4.7e-92   6.9e-88  294.1  16.2     2   259    10   267     9   267 0.96 Bacitracin resistance protein BacA
Prenyltransf         PF01255.14   223 sp|Q8ZH61|UPPS_YERPE -            252   1.6e-78  262.8   0.0   1   1   2.5e-82   1.9e-78  262.6   0.0     1   222    22   242    22   243 0.99 Putative undecaprenyl diphosphate synthase
Glyco_hydro_97       PF10566.4    273 sp|Q8ZH61|UPPS_YERPE -            252     0.091   11.8   0.0   1   1   1.7e-05      0.13   11.3   0.0    15    68    29    82    24   116 0.73 Glycoside hydrolase 97
UPRTase              PF14681.1    207 sp|Q8ZCX9|UPP_YERPE  -            208   6.2e-65  218.2   0.0   1   1   2.8e-68     7e-65  218.1   0.0     3   207     7   207     4   207 0.98 Uracil phosphoribosyltransferase
Pribosyltran         PF00156.22   125 sp|Q8ZCX9|UPP_YERPE  -            208   1.8e-15   56.7   0.2   1   1   1.2e-18   2.9e-15   56.1   0.2    19   125    64   160    58   160 0.91 Phosphoribosyl transferase domain
DUF1019              PF06254.6     89 sp|Q8ZCX9|UPP_YERPE  -            208    0.0078   16.3   0.0   1   1   6.2e-06     0.015   15.4   0.0    16    84   102   171    89   173 0.90 Protein of unknown function (DUF1019)
Pribosyl_synth       PF14572.1    184 sp|Q8ZCX9|UPP_YERPE  -            208     0.038   13.7   0.0   1   1   2.4e-05      0.06   13.0   0.0    76   118   116   158    92   188 0.84 Phosphoribosyl synthetase-associated domain
NifT                 PF06988.6     64 sp|Q8ZCX9|UPP_YERPE  -            208     0.075   12.5   0.1   1   1   5.5e-05      0.14   11.6   0.1     9    42    34    64    29    76 0.85 NifT/FixU protein
DUF3263              PF11662.3     77 sp|Q8ZCX9|UPP_YERPE  -            208      0.15   11.5   0.0   1   1   0.00011      0.27   10.6   0.0    29    59   103   133    99   135 0.90 Protein of unknown function (DUF3263)
Amidohydro_1         PF01979.15   333 sp|Q9ZFR9|URE1_YERPE -            572   1.2e-60  205.8   0.4   1   1   6.5e-64   1.6e-60  205.5   0.4     1   333   130   441   130   441 0.98 Amidohydrolase family
Urease_alpha         PF00449.15   121 sp|Q9ZFR9|URE1_YERPE -            572     1e-49  167.6   3.9   1   1   9.3e-53   2.3e-49  166.5   3.9     2   121     3   124     2   124 0.97 Urease alpha-subunit, N-terminal domain
Amidohydro_3         PF07969.6    404 sp|Q9ZFR9|URE1_YERPE -            572   2.1e-08   33.8   1.4   2   2     3e-09   7.3e-06   25.4   0.3   222   404   229   439   212   439 0.78 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|Q9ZFR9|URE1_YERPE -            572   0.00065   19.4   3.2   1   2     1e-06    0.0025   17.5   2.6     1    67    89   158    89   176 0.61 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|Q9ZFR9|URE1_YERPE -            572    0.0013   18.7   0.9   1   1   1.5e-05     0.038   14.0   0.9     9   304   133   438    40   438 0.69 Amidohydrolase
TatD_DNase           PF01026.16   255 sp|Q9ZFR9|URE1_YERPE -            572     0.065   12.4   0.0   2   2   0.00024       0.6    9.2   0.0   100   134   221   260   212   297 0.81 TatD related DNase
Urease_beta          PF00699.15   100 sp|P69990|URE2_YERPE -            144   1.2e-41  140.6   0.0   1   1     2e-45   1.5e-41  140.3   0.0     3    99    18   114    16   115 0.97 Urease beta subunit
PapD_N               PF00345.15   122 sp|P69990|URE2_YERPE -            144     0.018   14.8   0.0   1   1   3.1e-06     0.023   14.4   0.0     1    35    19    53    19    98 0.90 Pili and flagellar-assembly chaperone, PapD N-terminal domain
Urease_gamma         PF00547.13    99 sp|P69994|URE3_YERPE -            100   5.2e-43  145.0   0.2   1   1   3.9e-47   5.7e-43  144.9   0.2     1    99     1    99     1    99 1.00 Urease, gamma subunit
UreD                 PF01774.12   209 sp|Q9ZFR5|URED_YERPE -            277   3.3e-42  144.3   0.0   1   1   3.1e-46   4.6e-42  143.8   0.0     2   176    88   262    87   274 0.93 UreD urease accessory protein
UreE_N               PF02814.10    65 sp|Q9ZFR8|UREE_YERPE -            231     6e-18   64.1   1.2   1   1   2.5e-21   9.3e-18   63.5   0.6     4    64    14    74    11    75 0.95 UreE urease accessory protein, N-terminal domain
UreE_C               PF05194.7     87 sp|Q9ZFR8|UREE_YERPE -            231   6.7e-10   38.9  29.3   1   1   1.2e-11   4.4e-08   33.0  29.3     2    87    84   228    83   231 0.82 UreE urease accessory protein, C-terminal domain
START                PF01852.14   206 sp|Q9ZFR8|UREE_YERPE -            231     0.068   12.4   0.0   1   1   2.7e-05       0.1   11.9   0.0   164   203    86   125    69   127 0.94 START domain
UreF                 PF01730.11   146 sp|Q9ZFR7|UREF_YERPE -            228   1.2e-28  100.0   0.8   1   1   1.1e-32   1.6e-28   99.6   0.8     2   144    37   186    36   188 0.98 UreF
cobW                 PF02492.14   178 sp|P69992|UREG_YERPE -            220   1.8e-35  121.9   0.0   1   1   1.4e-38   2.1e-35  121.7   0.0     3   176    14   186    12   188 0.93 CobW/HypB/UreG, nucleotide-binding domain
ArgK                 PF03308.11   267 sp|P69992|UREG_YERPE -            220   4.8e-07   28.8   0.5   1   2     5e-05     0.075   11.8   0.4    29    65    11    47     3    54 0.88 ArgK protein
ArgK                 PF03308.11   267 sp|P69992|UREG_YERPE -            220   4.8e-07   28.8   0.5   2   2   4.7e-06    0.0069   15.1   0.0   123   228   106   207   103   220 0.69 ArgK protein
GTP_EFTU             PF00009.22   188 sp|P69992|UREG_YERPE -            220   0.00029   20.3   0.7   2   2   4.8e-05     0.071   12.5   0.0    92   184   124   206   117   208 0.73 Elongation factor Tu GTP binding domain
MobB                 PF03205.9    140 sp|P69992|UREG_YERPE -            220   0.00055   19.6   0.3   1   1   9.1e-07    0.0013   18.3   0.3     2    35    13    46    12    78 0.91 Molybdopterin guanine dinucleotide synthesis protein B
PRK                  PF00485.13   194 sp|P69992|UREG_YERPE -            220     0.018   14.6   0.0   1   1   2.3e-05     0.033   13.7   0.0     2    42    14    54    13    95 0.86 Phosphoribulokinase / Uridine kinase family
SRP54                PF00448.17   196 sp|P69992|UREG_YERPE -            220     0.026   13.9   0.0   1   1     5e-05     0.074   12.4   0.0     7    53    17    63    12   117 0.77 SRP54-type protein, GTPase domain
ABC_tran             PF00005.22   137 sp|P69992|UREG_YERPE -            220     0.033   14.5   0.0   1   1   2.9e-05     0.044   14.0   0.0    10    52    10    67     2   126 0.67 ABC transporter
LpxK                 PF02606.9    326 sp|P69992|UREG_YERPE -            220     0.073   12.0   0.0   1   1   5.9e-05     0.087   11.7   0.0    47   153    21   134     7   159 0.71 Tetraacyldisaccharide-1-P 4'-kinase
AAA_23               PF13476.1    202 sp|P69992|UREG_YERPE -            220     0.076   13.3   0.1   1   1   7.2e-05      0.11   12.8   0.1    24    46    16    38    12   122 0.78 AAA domain
AAA_18               PF13238.1    129 sp|P69992|UREG_YERPE -            220     0.088   13.1   0.5   1   1   9.2e-05      0.14   12.5   0.5     1    47    14    60    14   132 0.78 AAA domain
PRK                  PF00485.13   194 sp|Q8ZFZ9|URK_YERPE  -            213   6.9e-44  149.7   0.0   1   1   4.8e-47   7.9e-44  149.5   0.0     1   193    10   199    10   200 0.94 Phosphoribulokinase / Uridine kinase family
AAA_18               PF13238.1    129 sp|Q8ZFZ9|URK_YERPE  -            213   7.1e-10   39.2   0.0   1   1   6.5e-13   1.1e-09   38.7   0.0     1   118    11   158    11   169 0.86 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZFZ9|URK_YERPE  -            213   4.5e-07   30.7   0.1   1   1     5e-10   8.3e-07   29.8   0.1     1   119    10   161    10   163 0.70 AAA domain
CoaE                 PF01121.15   180 sp|Q8ZFZ9|URK_YERPE  -            213     6e-05   22.5   0.7   1   2   0.00016      0.27   10.6   0.0     2    22    10    30     9    41 0.79 Dephospho-CoA kinase
CoaE                 PF01121.15   180 sp|Q8ZFZ9|URK_YERPE  -            213     6e-05   22.5   0.7   2   2   0.00018       0.3   10.4   0.1    95   163   103   172    88   180 0.81 Dephospho-CoA kinase
APS_kinase           PF01583.15   157 sp|Q8ZFZ9|URK_YERPE  -            213   0.00028   20.5   0.0   1   2   6.9e-05      0.11   12.1   0.0     3    29     9    35     7    48 0.86 Adenylylsulphate kinase
ABC_tran             PF00005.22   137 sp|Q8ZFZ9|URK_YERPE  -            213     0.013   15.8   0.0   1   1   1.1e-05     0.018   15.3   0.0    13    45    10    42     4   173 0.81 ABC transporter
AAA_16               PF13191.1    185 sp|Q8ZFZ9|URK_YERPE  -            213     0.065   13.2   0.0   1   1   5.4e-05     0.089   12.7   0.0    23    56     7    41     2    90 0.79 AAA ATPase domain
AAA_33               PF13671.1    143 sp|Q8ZFZ9|URK_YERPE  -            213     0.096   12.5   0.1   1   1   0.00037      0.62    9.9   0.1     5    84    14   101    10   175 0.58 AAA domain
Usp                  PF00582.21   140 sp|Q8ZA49|USPA_YERPE -            148   1.2e-20   74.0   0.0   1   1   2.9e-24   1.4e-20   73.8   0.0     2   140     3   138     2   138 0.98 Universal stress protein family
ETF                  PF01012.16   164 sp|Q8ZA49|USPA_YERPE -            148    0.0043   16.7   0.0   1   1   2.1e-06      0.01   15.5   0.0    13    99    12   112     9   116 0.89 Electron transfer flavoprotein domain
CLASP_N              PF12348.3    228 sp|Q8ZA49|USPA_YERPE -            148      0.14   11.4   0.0   1   2   9.3e-05      0.46    9.8   0.0    95   128    46    80    30    88 0.77 CLASP N terminal
UspB                 PF10625.4    107 sp|Q8ZA50|USPB_YERPE -            111   1.2e-52  176.2   0.3   1   1   9.1e-57   1.4e-52  176.0   0.3     1   107     1   107     1   107 0.99 Universal stress protein B (UspB)
Usp                  PF00582.21   140 sp|Q8ZE81|USPE_YERPE -            318   8.7e-34  116.7   0.0   1   2   1.7e-22   2.5e-18   66.6   0.0     2   140     4   146     3   146 0.98 Universal stress protein family
Usp                  PF00582.21   140 sp|Q8ZE81|USPE_YERPE -            318   8.7e-34  116.7   0.0   2   2   7.7e-17   1.1e-12   48.2   0.0    17   140   175   300   157   300 0.87 Universal stress protein family
ABC_tran             PF00005.22   137 sp|Q8ZJ07|UVRA_YERPE -            947   1.7e-20   73.7   0.1   1   3   2.9e-05     0.012   15.8   0.0     1    28    14    41    14   235 0.68 ABC transporter
ABC_tran             PF00005.22   137 sp|Q8ZJ07|UVRA_YERPE -            947   1.7e-20   73.7   0.1   2   3   5.5e-05     0.023   14.9   0.0    53   135   410   515   363   517 0.74 ABC transporter
ABC_tran             PF00005.22   137 sp|Q8ZJ07|UVRA_YERPE -            947   1.7e-20   73.7   0.1   3   3   3.7e-11   1.6e-08   34.9   0.0     1   136   623   860   623   861 0.76 ABC transporter
SMC_N                PF02463.14   220 sp|Q8ZJ07|UVRA_YERPE -            947   4.3e-10   39.2   0.0   4   4   0.00042      0.18   11.0   0.0   136   209   829   902   684   909 0.84 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|Q8ZJ07|UVRA_YERPE -            947   7.4e-07   28.7   1.1   1   2   0.00029      0.12   11.7   0.0    29    56    20    47     8    52 0.87 AAA domain
AAA_25               PF13481.1    194 sp|Q8ZJ07|UVRA_YERPE -            947   7.4e-07   28.7   1.1   2   2   4.2e-05     0.018   14.4   0.0    30    65   630   664   603   677 0.85 AAA domain
AAA_29               PF13555.1     62 sp|Q8ZJ07|UVRA_YERPE -            947   9.3e-07   28.2   0.2   1   2   0.00079      0.33   10.4   0.0    22    39    23    40    12    53 0.82 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|Q8ZJ07|UVRA_YERPE -            947   9.3e-07   28.2   0.2   2   2   4.5e-05     0.019   14.4   0.1    26    40   636   650   623   665 0.84 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|Q8ZJ07|UVRA_YERPE -            947   1.2e-06   28.5   1.5   1   2    0.0022      0.92    9.4   0.0    25    41    25    41    11    72 0.81 AAA ATPase domain
AAA_16               PF13191.1    185 sp|Q8ZJ07|UVRA_YERPE -            947   1.2e-06   28.5   1.5   2   2   3.6e-05     0.015   15.2   0.0    27    54   636   665   625   681 0.80 AAA ATPase domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|Q8ZJ07|UVRA_YERPE -            947   7.8e-06   25.8   2.8   3   3     7e-06     0.003   17.5   0.3    17    52   739   771   730   777 0.86 DnaJ central domain
DUF258               PF03193.11   161 sp|Q8ZJ07|UVRA_YERPE -            947   2.3e-05   23.6   0.2   2   2   0.00014     0.058   12.5   0.1    22    57   619   655   603   667 0.75 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|Q8ZJ07|UVRA_YERPE -            947   9.4e-05   23.2   6.5   1   2    0.0013      0.55   11.0   0.4     1    16    26    41    26    42 0.93 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZJ07|UVRA_YERPE -            947   9.4e-05   23.2   6.5   2   2    0.0011      0.49   11.2   0.3     3    16   637   650   637   652 0.92 AAA domain
AAA_18               PF13238.1    129 sp|Q8ZJ07|UVRA_YERPE -            947   0.00017   21.9   0.0   2   2    0.0022      0.92    9.8   0.0     2    16   637   651   637   684 0.90 AAA domain
NACHT                PF05729.7    166 sp|Q8ZJ07|UVRA_YERPE -            947   0.00088   18.9   0.0   2   2   0.00028      0.12   12.0   0.0     3    32   636   665   634   681 0.90 NACHT domain
AAA_10               PF12846.2    304 sp|Q8ZJ07|UVRA_YERPE -            947   0.00096   18.6   0.1   2   2    0.0011      0.47    9.8   0.0     5    27   637   659   635   692 0.81 AAA-like domain
MobB                 PF03205.9    140 sp|Q8ZJ07|UVRA_YERPE -            947    0.0036   16.9   0.1   2   2   0.00076      0.32   10.6   0.0     5    34   638   667   635   671 0.90 Molybdopterin guanine dinucleotide synthesis protein B
AAA_23               PF13476.1    202 sp|Q8ZJ07|UVRA_YERPE -            947    0.0038   17.5   5.9   1   2    0.0012      0.51   10.6   0.1     3    35     5    40     3    42 0.80 AAA domain
Viral_helicase1      PF01443.13   234 sp|Q8ZJ07|UVRA_YERPE -            947    0.0046   16.4   0.0   2   2   0.00067      0.28   10.6   0.0     3    21   638   656   636   684 0.84 Viral (Superfamily 1) RNA helicase
Arch_ATPase          PF01637.13   234 sp|Q8ZJ07|UVRA_YERPE -            947    0.0056   16.3   0.1   1   2    0.0014      0.61    9.7   0.0     4    68    10    68     9   117 0.68 Archaeal ATPase
cobW                 PF02492.14   178 sp|Q8ZJ07|UVRA_YERPE -            947    0.0061   16.0   0.4   2   2   0.00068      0.29   10.5   0.1     3    23   636   658   634   669 0.77 CobW/HypB/UreG, nucleotide-binding domain
MMR_HSR1             PF01926.18   116 sp|Q8ZJ07|UVRA_YERPE -            947    0.0082   16.1   0.1   2   2    0.0021       0.9    9.5   0.0     3    20   637   654   636   688 0.73 50S ribosome-binding GTPase
NTPase_1             PF03266.10   168 sp|Q8ZJ07|UVRA_YERPE -            947     0.052   13.2   0.2   2   2    0.0019      0.82    9.3   0.1     3    28   637   662   636   671 0.85 NTPase
DUF2083              PF09856.4    156 sp|Q8ZJ07|UVRA_YERPE -            947     0.059   13.0   0.0   1   1   0.00043      0.18   11.4   0.0    21    85    99   164    96   173 0.89 Predicted transcriptional regulator (DUF2083)
UvrB                 PF12344.3     44 sp|Q8ZGW7|UVRB_YERPE -            671   6.9e-20   70.3   0.4   1   1   1.6e-22     2e-19   68.8   0.4     1    44   552   595   552   595 0.98 Ultra-violet resistance protein B
Helicase_C           PF00271.26    78 sp|Q8ZGW7|UVRB_YERPE -            671   1.2e-15   57.1   0.0   1   1   2.4e-18     3e-15   55.8   0.0     2    76   465   544   464   545 0.98 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|Q8ZGW7|UVRB_YERPE -            671   1.4e-11   44.5   0.0   1   2   1.5e-13   1.9e-10   40.8   0.0     6    98    15   105    11   134 0.80 Type III restriction enzyme, res subunit
UVR                  PF02151.14    36 sp|Q8ZGW7|UVRB_YERPE -            671   4.6e-10   38.6   4.6   1   1   1.1e-12   1.4e-09   37.1   4.6     2    36   632   666   631   666 0.95 UvrB/uvrC motif
AAA_19               PF13245.1     76 sp|Q8ZGW7|UVRB_YERPE -            671   5.4e-06   26.0   0.0   1   2   4.7e-07   0.00058   19.5   0.0    15    58    37    73    19    88 0.82 Part of AAA domain
DEAD                 PF00270.24   169 sp|Q8ZGW7|UVRB_YERPE -            671   2.4e-05   23.9   0.0   1   2   5.6e-07   0.00069   19.1   0.0    19    70    37    83    16   123 0.81 DEAD/DEAH box helicase
UB2H                 PF14814.1     85 sp|Q8ZGW7|UVRB_YERPE -            671    0.0048   16.5   0.0   1   1   1.1e-05     0.013   15.1   0.0     1    43   161   203   161   216 0.95 Bifunctional transglycosylase second domain
DUF87                PF01935.12   229 sp|Q8ZGW7|UVRB_YERPE -            671      0.04   13.7   0.9   1   1   9.2e-05      0.11   12.2   0.0    25    48    34    57    32    69 0.84 Domain of unknown function DUF87
AAA_33               PF13671.1    143 sp|Q8ZGW7|UVRB_YERPE -            671     0.055   13.3   0.1   1   1   0.00035      0.43   10.4   0.0     4    77    37   140    36   210 0.74 AAA domain
Kinesin              PF00225.18   335 sp|Q8ZGW7|UVRB_YERPE -            671      0.07   11.8   0.0   1   1    0.0001      0.13   10.9   0.0    41   137     3    97     1   113 0.62 Kinesin motor domain
DUF1136              PF06582.7     28 sp|Q8ZGW7|UVRB_YERPE -            671     0.072   12.7   0.2   1   1   5.8e-05     0.072   12.7   0.2     2    21   621   641   621   644 0.92 Repeat of unknown function (DUF1136)
DUF1409              PF07197.7     51 sp|Q8ZGW7|UVRB_YERPE -            671       0.5   10.4   6.3   1   1   9.7e-05      0.12   12.4   1.9    20    47   259   286   253   288 0.91 Protein of unknown function (DUF1409)
UvrC_HhH_N           PF08459.6    155 sp|Q8ZF52|UVRC_YERPE -            610   1.5e-52  177.2   0.0   1   1   1.4e-55   3.1e-52  176.2   0.0     1   155   383   542   383   542 0.95 UvrC Helix-hairpin-helix N-terminal
GIY-YIG              PF01541.19    80 sp|Q8ZF52|UVRC_YERPE -            610   5.9e-12   45.7   0.8   1   1   6.1e-15   1.3e-11   44.6   0.3     2    80    18    93    17    93 0.87 GIY-YIG catalytic domain
UVR                  PF02151.14    36 sp|Q8ZF52|UVRC_YERPE -            610     1e-09   37.5   0.7   1   1   1.2e-12   2.5e-09   36.3   0.7     2    34   205   237   204   239 0.93 UvrB/uvrC motif
HHH                  PF00633.18    30 sp|Q8ZF52|UVRC_YERPE -            610   1.8e-08   33.6   0.0   2   2   1.4e-08   2.9e-05   23.5   0.0     5    29   582   606   579   607 0.93 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|Q8ZF52|UVRC_YERPE -            610   4.9e-08   33.0   0.0   1   1   7.1e-11   1.5e-07   31.4   0.0     7    59   558   609   555   610 0.94 Helix-hairpin-helix domain
HHH_2                PF12826.2     64 sp|Q8ZF52|UVRC_YERPE -            610   1.4e-05   24.9   0.0   1   1   1.4e-08     3e-05   23.8   0.0     8    55   561   608   558   610 0.95 Helix-hairpin-helix motif
HHH_3                PF12836.2     65 sp|Q8ZF52|UVRC_YERPE -            610   9.9e-05   22.2   0.7   2   2   4.1e-05     0.087   12.7   0.1    11    31   585   605   584   607 0.92 Helix-hairpin-helix motif
Mannitol_dh_C        PF08125.8    245 sp|Q8ZIC5|UXAB_YERPE -            483   3.3e-66  222.9   0.0   1   1   5.8e-70   4.3e-66  222.5   0.0     1   244   203   458   203   459 0.96 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|Q8ZIC5|UXAB_YERPE -            483   2.1e-28   99.1   0.0   1   1   7.8e-32   5.8e-28   97.7   0.0     2   150    17   172    16   173 0.97 Mannitol dehydrogenase Rossmann domain
UxaC                 PF02614.9    462 sp|Q8ZIC6|UXAC_YERPE -            469  6.4e-196  651.4   0.0   1   1  9.7e-200  7.2e-196  651.2   0.0     1   462     1   465     1   465 1.00 Glucuronate isomerase
UxuA                 PF03786.8    351 sp|Q8ZGK8|UXUA_YERPE -            397    1e-151  504.4   0.0   1   1  1.6e-155  1.2e-151  504.2   0.0     1   350     1   388     1   389 0.99 D-mannonate dehydratase (UxuA)
AP_endonuc_2         PF01261.19   213 sp|Q8ZGK8|UXUA_YERPE -            397   2.3e-07   30.3   0.0   1   1   1.1e-10   7.8e-07   28.5   0.0    94   201   108   304    16   316 0.68 Xylose isomerase-like TIM barrel
VWA_CoxE             PF05762.9    222 sp|Q8ZJT2|VIAA_YERPE -            488   1.1e-09   37.7   0.0   1   1     1e-12   2.6e-09   36.5   0.0    42   173   311   441   303   466 0.81 VWA domain containing CoxE-like protein
VWA_3                PF13768.1    155 sp|Q8ZJT2|VIAA_YERPE -            488   2.6e-05   23.9   0.0   1   1   2.2e-08   5.3e-05   22.9   0.0     6   135   330   458   327   466 0.78 von Willebrand factor type A domain
VWA_2                PF13519.1    172 sp|Q8ZJT2|VIAA_YERPE -            488   0.00018   21.6   0.0   1   1   1.3e-07   0.00032   20.8   0.0     2   135   327   457   326   469 0.78 von Willebrand factor type A domain
DUF2201              PF09967.4    126 sp|Q8ZJT2|VIAA_YERPE -            488     0.017   15.1   0.0   1   1   1.3e-05     0.033   14.2   0.0     3    80   329   411   327   426 0.82 VWA-like domain (DUF2201)
VWA                  PF00092.23   178 sp|Q8ZJT2|VIAA_YERPE -            488     0.025   14.2   0.0   1   1   1.7e-05     0.042   13.5   0.0     5   100   330   416   328   443 0.84 von Willebrand factor type A domain
QCR10                PF09796.4     64 sp|Q8ZJT2|VIAA_YERPE -            488     0.077   12.6   0.1   1   1   6.4e-05      0.16   11.6   0.1    27    57    31    61    22    67 0.80 Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
Glycos_transf_4      PF00953.16   159 sp|Q8ZAE1|WECA_YERPE -            365   3.6e-28   98.3  18.3   2   3   2.4e-32   3.6e-28   98.3  18.3     3   156    75   232    73   235 0.92 Glycosyl transferase family 4
Epimerase_2          PF02350.14   346 sp|Q8ZAE3|WECB_YERPE -            376  2.7e-125  417.7   0.0   1   1  1.4e-128    3e-125  417.5   0.0     2   346    22   370    21   370 0.97 UDP-N-acetylglucosamine 2-epimerase
Glyco_trans_4_4      PF13579.1    160 sp|Q8ZAE3|WECB_YERPE -            376   0.00057   20.0   0.0   1   2   2.1e-06    0.0044   17.1   0.1    45   159    58   171    13   172 0.67 Glycosyl transferase 4-like domain
Glycos_transf_1      PF00534.15   172 sp|Q8ZAE3|WECB_YERPE -            376    0.0028   17.0   0.0   1   1   3.3e-06    0.0069   15.8   0.0   111   167   296   351   263   354 0.92 Glycosyl transferases group 1
Glyco_trans_1_4      PF13692.1    135 sp|Q8ZAE3|WECB_YERPE -            376     0.007   16.5   0.0   2   2   2.9e-05     0.061   13.4   0.0    15   135   220   342   205   342 0.73 Glycosyl transferases group 1
Glyco_trans_4_2      PF13477.1    139 sp|Q8ZAE3|WECB_YERPE -            376     0.049   13.4   0.0   1   1   4.3e-05      0.09   12.6   0.0    64   102    75   113    45   138 0.85 Glycosyl transferase 4-like
Glyco_transf_4       PF13439.1    177 sp|Q8ZAE3|WECB_YERPE -            376     0.055   13.1   0.0   1   1   7.1e-05      0.15   11.7   0.0    72   171    78   173    59   178 0.83 Glycosyltransferase Family 4
PTH2                 PF01981.11   116 sp|Q8ZAE3|WECB_YERPE -            376      0.12   12.1   0.1   2   2   0.00025      0.53    9.9   0.1    66   113   293   340   291   342 0.93 Peptidyl-tRNA hydrolase PTH2
UDPG_MGDP_dh_N       PF03721.9    185 sp|Q8ZAE4|WECC_YERPE -            420     1e-58  197.7   0.2   1   2   1.9e-59   2.3e-56  190.1   0.1     2   181     5   187     4   192 0.96 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh         PF00984.14    96 sp|Q8ZAE4|WECC_YERPE -            420   7.5e-30  102.9   0.0   1   1   1.2e-32   1.4e-29  102.1   0.0     2    79   206   281   205   295 0.93 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C       PF03720.10   106 sp|Q8ZAE4|WECC_YERPE -            420   7.3e-20   71.1   0.0   1   1   1.4e-22   1.7e-19   69.8   0.0     1   104   324   419   324   420 0.94 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
NAD_binding_2        PF03446.10   163 sp|Q8ZAE4|WECC_YERPE -            420   2.1e-07   30.9   1.0   1   2   3.6e-09   4.4e-06   26.6   0.1     3   111     5   136     3   140 0.77 NAD binding domain of 6-phosphogluconate dehydrogenase
ApbA                 PF02558.11   151 sp|Q8ZAE4|WECC_YERPE -            420    0.0011   18.4   1.0   1   3   2.1e-05     0.026   13.9   0.2     1    77     6    85     6   138 0.82 Ketopantoate reductase PanE/ApbA
3HCDH_N              PF02737.13   180 sp|Q8ZAE4|WECC_YERPE -            420    0.0025   17.5   0.5   1   1   5.5e-06    0.0068   16.0   0.2     1    40     5    44     5    62 0.89 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
TrkA_N               PF02254.13   116 sp|Q8ZAE4|WECC_YERPE -            420    0.0082   16.1   0.6   1   1   1.9e-05     0.024   14.6   0.1     1    48     6    53     6   111 0.89 TrkA-N domain
2-Hacid_dh_C         PF02826.14   178 sp|Q8ZAE4|WECC_YERPE -            420     0.017   14.2   0.3   1   2   0.00016       0.2   10.7   0.1    37    82     4    49     1    61 0.79 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Methyltransf_18      PF12847.2    112 sp|Q8ZAE4|WECC_YERPE -            420     0.032   14.8   0.0   1   1    0.0001      0.12   12.9   0.0    16   111    19   119     9   142 0.75 Methyltransferase domain
Pyr_redox            PF00070.22    80 sp|Q8ZAE4|WECC_YERPE -            420     0.032   14.6   0.4   1   1   6.3e-05     0.078   13.3   0.4     2    47     6    51     5    65 0.81 Pyridine nucleotide-disulphide oxidoreductase
Glyco_transf_56      PF07429.6    361 sp|Q8ZAF0|WECF_YERPE -            361  9.2e-189  626.8   0.1   1   1  1.4e-192    1e-188  626.7   0.1     1   360     1   360     1   361 1.00 4-alpha-L-fucosyltransferase glycosyl transferase group 56
Glyco_trans_1_4      PF13692.1    135 sp|Q8ZAF0|WECF_YERPE -            361   9.8e-07   28.9   0.0   2   2   5.1e-10   3.8e-06   27.0   0.0     3   118   188   313   187   332 0.76 Glycosyl transferases group 1
Glyco_tran_WecB      PF03808.8    172 sp|Q8ZAF2|WECG_YERPE -            246     2e-56  190.1   0.2   1   1   1.6e-60   2.4e-56  189.8   0.2     2   172    61   231    60   231 0.97 Glycosyl transferase WecB/TagA/CpsF family
WzyE                 PF06899.6    449 sp|Q8ZAF1|WZYE_YERPE -            454  1.5e-279  927.0  42.5   1   1  2.3e-283  1.7e-279  926.8  42.5     1   448     1   451     1   452 0.99 WzyE protein
Phage_integrase      PF00589.17   173 sp|Q8D1K0|XERC_YERPE -            303   2.1e-49  167.5   0.2   2   2   1.2e-52   4.6e-49  166.4   0.0     3   172   118   285   116   286 0.98 Phage integrase family
Phage_int_SAM_1      PF02899.12    84 sp|Q8D1K0|XERC_YERPE -            303   1.5e-22   79.5   1.4   1   1   4.1e-26   1.5e-22   79.5   1.4     1    84    12    95    12    95 0.98 Phage integrase, N-terminal SAM-like domain
Phage_int_SAM_4      PF13495.1     85 sp|Q8D1K0|XERC_YERPE -            303   1.9e-05   24.9   0.6   1   2   7.3e-06     0.027   14.7   0.1    45    76    11    42     2    50 0.90 Phage integrase, N-terminal SAM-like domain
DUF3435              PF11917.3    418 sp|Q8D1K0|XERC_YERPE -            303      0.08   11.6   0.1   2   2   4.3e-05      0.16   10.6   0.1   169   235   215   279   202   296 0.75 Protein of unknown function (DUF3435)
Phage_integrase      PF00589.17   173 sp|Q8ZHK1|XERD_YERPE -            299   1.9e-52  177.4   0.0   1   1   6.9e-56   2.6e-52  177.0   0.0     3   172   114   286   112   287 0.98 Phage integrase family
Phage_int_SAM_1      PF02899.12    84 sp|Q8ZHK1|XERD_YERPE -            299   2.7e-23   81.9   2.4   1   2   7.4e-27   2.7e-23   81.9   2.4     1    84     9    91     9    91 0.99 Phage integrase, N-terminal SAM-like domain
Phage_int_SAM_4      PF13495.1     85 sp|Q8ZHK1|XERD_YERPE -            299   2.6e-06   27.6   0.5   1   2     7e-10   2.6e-06   27.6   0.5     1    83     8    92     8    94 0.92 Phage integrase, N-terminal SAM-like domain
Integrase_1          PF12835.2    187 sp|Q8ZHK1|XERD_YERPE -            299     0.013   15.2   0.3   1   1   7.8e-06     0.029   14.1   0.3    35   174   138   271   132   283 0.75 Integrase
Pribosyltran         PF00156.22   125 sp|Q8ZC05|XGPT_YERPE -            152   2.2e-12   46.7   0.0   1   1   2.4e-16   3.5e-12   46.1   0.0     2   112     4   105     3   112 0.83 Phosphoribosyl transferase domain
5_3_exonuc_N         PF02739.11   169 sp|Q7CH07|XNI_YERPE  -            251   8.3e-28   96.8   0.0   1   1   2.4e-31   1.2e-27   96.3   0.0    35   149    26   142     5   158 0.90 5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc           PF01367.15   101 sp|Q7CH07|XNI_YERPE  -            251   9.3e-22   77.1   0.0   1   1     3e-25   1.5e-21   76.5   0.0     1    92   160   250   160   251 0.97 5'-3' exonuclease, C-terminal SAM fold
Peptidase_C93        PF06035.6    170 sp|Q7CH07|XNI_YERPE  -            251     0.035   13.5   0.0   1   1   1.3e-05     0.063   12.7   0.0    94   126    99   131    94   155 0.86 Bacterial transglutaminase-like cysteine proteinase BTLCP
AP_endonuc_2         PF01261.19   213 sp|Q8Z9Z1|XYLA_YERPE -            439   5.5e-19   68.3   0.4   2   3   1.2e-21   1.8e-17   63.3   0.1    25   204   103   310    83   314 0.77 Xylose isomerase-like TIM barrel
ABC_tran             PF00005.22   137 sp|Q7CFR2|XYLG_YERPE -            510   6.7e-51  172.1   0.3   1   2   2.7e-32   1.7e-29  102.8   0.1     1   137    20   171    20   171 0.95 ABC transporter
ABC_tran             PF00005.22   137 sp|Q7CFR2|XYLG_YERPE -            510   6.7e-51  172.1   0.3   2   2   2.1e-21   1.3e-18   67.5   0.0     2   136   278   433   277   434 0.84 ABC transporter
AAA_21               PF13304.1    303 sp|Q7CFR2|XYLG_YERPE -            510   4.8e-17   62.8   1.9   1   3   7.3e-07   0.00045   20.2   0.0     4    24    35    55    32    89 0.77 AAA domain
AAA_21               PF13304.1    303 sp|Q7CFR2|XYLG_YERPE -            510   4.8e-17   62.8   1.9   2   3   1.7e-06    0.0011   19.0   0.0   231   297   137   200    97   205 0.89 AAA domain
AAA_21               PF13304.1    303 sp|Q7CFR2|XYLG_YERPE -            510   4.8e-17   62.8   1.9   3   3   2.6e-07   0.00016   21.7   0.1   212   295   381   461   357   463 0.79 AAA domain
AAA_10               PF12846.2    304 sp|Q7CFR2|XYLG_YERPE -            510   5.4e-05   22.7   0.5   1   2   0.00092      0.57    9.5   0.1     6    22    35    51    31    54 0.88 AAA-like domain
AAA_10               PF12846.2    304 sp|Q7CFR2|XYLG_YERPE -            510   5.4e-05   22.7   0.5   2   2   0.00076      0.47    9.8   0.0   215   268   155   207   109   221 0.77 AAA-like domain
AAA_15               PF13175.1    415 sp|Q7CFR2|XYLG_YERPE -            510   0.00026   20.1   1.5   1   3   0.00037      0.23   10.4   0.1    20    54    25    73     8   101 0.67 AAA ATPase domain
UPF0079              PF02367.12   123 sp|Q7CFR2|XYLG_YERPE -            510   0.00052   19.6   0.2   1   2   0.00011     0.066   12.8   0.0     8    36    23    51    16   112 0.78 Uncharacterised P-loop hydrolase UPF0079
AAA_29               PF13555.1     62 sp|Q7CFR2|XYLG_YERPE -            510    0.0011   18.4   0.4   1   1   5.3e-06    0.0033   16.9   0.1    22    40    29    47    19    53 0.84 P-loop containing region of AAA domain
SbcCD_C              PF13558.1     90 sp|Q7CFR2|XYLG_YERPE -            510    0.0013   18.5   0.2   1   2   0.00021      0.13   12.2   0.0    50    89   147   186   141   187 0.83 Putative exonuclease SbcCD, C subunit
SMC_N                PF02463.14   220 sp|Q7CFR2|XYLG_YERPE -            510    0.0014   17.9   4.7   1   2   0.00013     0.081   12.1   0.8    26   210    32   213    17   221 0.67 RecF/RecN/SMC N terminal domain
AFG1_ATPase          PF03969.11   362 sp|Q7CFR2|XYLG_YERPE -            510    0.0037   16.1   0.1   3   3   0.00084      0.52    9.0   0.0   107   173   403   470   371   476 0.84 AFG1-like ATPase
DUF258               PF03193.11   161 sp|Q7CFR2|XYLG_YERPE -            510    0.0038   16.4   0.1   1   1   1.9e-05     0.012   14.8   0.1    24    73    18    82     5    96 0.81 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|Q7CFR2|XYLG_YERPE -            510    0.0039   17.3   7.9   1   1   2.2e-05     0.013   15.6   1.6     5   113    31   190    27   206 0.62 AAA domain
AAA_23               PF13476.1    202 sp|Q7CFR2|XYLG_YERPE -            510     0.011   16.0   0.0   1   1   4.1e-05     0.025   14.8   0.0    23    41    34    52    12    91 0.85 AAA domain
Rad17                PF03215.10   519 sp|Q7CFR2|XYLG_YERPE -            510     0.012   14.2   0.0   1   1   3.4e-05     0.021   13.5   0.0    32   112    17   102    10   117 0.77 Rad17 cell cycle checkpoint protein
AAA_25               PF13481.1    194 sp|Q7CFR2|XYLG_YERPE -            510     0.023   14.1   0.3   1   1    0.0002      0.13   11.7   0.3    30    55    27    52     9   201 0.78 AAA domain
AAA_17               PF13207.1    121 sp|Q7CFR2|XYLG_YERPE -            510     0.088   13.6   1.0   1   1   0.00064       0.4   11.5   0.0     4    45    35    82    32   137 0.70 AAA domain
G-alpha              PF00503.15   389 sp|Q7CFR2|XYLG_YERPE -            510     0.089   11.4   0.0   1   1   0.00018      0.11   11.1   0.0    61   120    33    92    27   251 0.68 G-protein alpha subunit
Terminase_6          PF03237.10   384 sp|Q7CFR2|XYLG_YERPE -            510      0.15   10.8   0.0   1   1    0.0004      0.25   10.0   0.0     6    59    39    91    37   106 0.90 Terminase-like family
Virul_fac_BrkB       PF03631.10   260 sp|Q8ZJR1|Y028_YERPE -            294   1.9e-52  178.2  28.5   1   1   1.4e-56   2.1e-52  178.0  28.5     2   258    29   276    28   278 0.87 Virulence factor BrkB
RadC                 PF04002.10   123 sp|Q8ZJP3|Y049_YERPE -            222   1.6e-46  157.0   0.1   1   1   6.9e-50   2.1e-46  156.6   0.1     3   123   102   222   100   222 0.97 RadC-like JAB domain
Prok-JAB             PF14464.1    105 sp|Q8ZJP3|Y049_YERPE -            222    0.0021   17.5   0.0   1   1   1.2e-06    0.0036   16.8   0.0    32    83   131   188   106   217 0.67 Prokaryotic homologs of the JAB domain
HHH_2                PF12826.2     64 sp|Q8ZJP3|Y049_YERPE -            222    0.0079   16.0   0.0   1   1     5e-06     0.015   15.1   0.0    14    45    43    74    31    85 0.92 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|Q8ZJP3|Y049_YERPE -            222     0.039   14.1   0.0   1   1   4.7e-05      0.14   12.3   0.0    16    50    43    76    24    83 0.86 Helix-hairpin-helix domain
Toxin-JAB1           PF15659.1    162 sp|Q8ZJP3|Y049_YERPE -            222     0.043   13.6   0.0   1   1   2.2e-05     0.064   13.1   0.0    98   139   146   188   141   200 0.79 JAB-like toxin  1
Peptidase_M20        PF01546.23   189 sp|Q8ZH96|Y1009_YERPE -            410   6.9e-15   55.0   0.0   1   1   2.9e-18   1.1e-14   54.4   0.0    35   185   143   402    79   406 0.89 Peptidase family M20/M25/M40
Peptidase_M42        PF05343.9    292 sp|Q8ZH96|Y1009_YERPE -            410     1e-10   40.8   0.1   2   3   1.4e-11   5.3e-08   31.9   0.3   133   196   143   207   127   220 0.90 M42 glutamyl aminopeptidase
M20_dimer            PF07687.9    112 sp|Q8ZH96|Y1009_YERPE -            410   2.2e-10   40.2   0.0   1   1   1.2e-13   4.3e-10   39.3   0.0     1   111   209   309   209   312 0.89 Peptidase dimerisation domain
Peptidase_M28        PF04389.12   179 sp|Q8ZH96|Y1009_YERPE -            410     0.042   13.5   0.1   1   1   2.3e-05     0.085   12.5   0.1    24    70   143   186   132   214 0.85 Peptidase family M28
DUF3461              PF11944.3    125 sp|Q74S44|Y1040_YERPE -            129   1.6e-57  192.7   4.2   1   1   1.2e-61   1.8e-57  192.5   4.2     1   125     1   125     1   125 1.00 Protein of unknown function (DUF3461)
UPF0253              PF06786.7     66 sp|Q8ZH47|Y1064_YERPE -             66   1.7e-37  127.3   0.6   1   1   1.2e-41   1.8e-37  127.2   0.6     1    66     1    66     1    66 0.99 Uncharacterised protein family (UPF0253)
Exo_endo_phos        PF03372.18   249 sp|Q8ZH34|Y1077_YERPE -            260     3e-07   30.6   0.3   1   1   1.2e-10   5.7e-07   29.7   0.3     3   249    48   251    46   251 0.57 Endonuclease/Exonuclease/phosphatase family
Exo_endo_phos_2      PF14529.1    119 sp|Q8ZH34|Y1077_YERPE -            260   0.00053   19.5   0.0   1   1   2.5e-07    0.0013   18.3   0.0    19   118   168   254   152   255 0.70 Endonuclease-reverse transcriptase
Peripla_BP_6         PF13458.1    343 sp|Q8ZH34|Y1077_YERPE -            260     0.021   14.1   0.0   1   1   8.1e-06      0.04   13.2   0.0   112   178   159   223   153   229 0.85 Periplasmic binding protein
Ub-RnfH              PF03658.9     84 sp|Q8ZH12|Y1103_YERPE -             94   9.7e-36  121.5   0.2   1   1   1.5e-39   1.1e-35  121.3   0.2     1    84     4    87     4    87 0.99 RnfH family Ubiquitin
SLBB                 PF10531.4     59 sp|Q8ZH12|Y1103_YERPE -             94     0.081   12.8   0.0   1   2   4.5e-05      0.34   10.8   0.0    13    37    20    44    19    59 0.82 SLBB domain
MFS_1                PF07690.11   352 sp|Q7CH99|Y1221_YERPE -            384   1.1e-18   67.1  94.9   1   2   5.5e-19   4.1e-15   55.3  54.8     3   326    22   324    21   331 0.76 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q7CH99|Y1221_YERPE -            384   1.1e-18   67.1  94.9   2   2   6.4e-10   4.8e-06   25.5  32.0     2   165   215   376   214   383 0.89 Major Facilitator Superfamily
MFS_1_like           PF12832.2     77 sp|Q7CH99|Y1221_YERPE -            384     0.033   13.9   0.2   1   4   4.4e-06     0.033   13.9   0.2    19    75    37    90    24    92 0.86 MFS_1 like family
DUF1414              PF07208.6     44 sp|Q8ZGM6|Y1261_YERPE -             75     1e-23   82.7   0.4   1   1   9.3e-28   1.4e-23   82.3   0.4     1    44    26    69    26    69 0.99 Protein of unknown function (DUF1414)
Cons_hypoth698       PF03601.9    305 sp|Q8ZGJ0|Y1307_YERPE -            362  2.5e-108  361.3  19.9   1   1  5.9e-112  2.9e-108  361.1  19.9     1   305    23   338    23   338 0.96 Conserved hypothetical protein 698
Asp-Al_Ex            PF06826.7    169 sp|Q8ZGJ0|Y1307_YERPE -            362    0.0037   16.7  15.6   1   2   7.5e-07    0.0037   16.7  15.6     5   167    31   190    25   192 0.84 Predicted Permease Membrane Region
MLANA                PF14991.1    118 sp|Q8ZGJ0|Y1307_YERPE -            362      0.14   12.2   0.3   1   2    0.0001      0.51   10.3   0.1    25    55   106   136    89   176 0.77 Protein melan-A
Asp-Al_Ex            PF06826.7    169 sp|Q8ZGH1|Y1326_YERPE -            562   1.4e-80  268.6  47.5   1   2   5.9e-43   2.9e-39  134.2  16.6     2   168    17   182    16   183 0.97 Predicted Permease Membrane Region
Asp-Al_Ex            PF06826.7    169 sp|Q8ZGH1|Y1326_YERPE -            562   1.4e-80  268.6  47.5   2   2   6.5e-45   3.2e-41  140.6  22.9     2   168   386   554   385   555 0.98 Predicted Permease Membrane Region
TrkA_C               PF02080.16    71 sp|Q8ZGH1|Y1326_YERPE -            562   2.9e-24   84.4   0.3   1   2   4.1e-15     2e-11   43.2   0.0    11    67   227   283   217   287 0.93 TrkA-C domain
TrkA_C               PF02080.16    71 sp|Q8ZGH1|Y1326_YERPE -            562   2.9e-24   84.4   0.3   2   2   8.7e-14   4.3e-10   39.0   0.2     3    71   305   372   303   372 0.91 TrkA-C domain
MFS_1                PF07690.11   352 sp|Q8ZGC3|Y1380_YERPE -            382   1.8e-27   95.9  48.2   1   2   1.2e-20   5.9e-17   61.4  31.3     1   258    11   250    11   251 0.84 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q8ZGC3|Y1380_YERPE -            382   1.8e-27   95.9  48.2   2   2   6.6e-15   3.2e-11   42.5  17.6     6   177   210   374   206   380 0.85 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|Q8ZGC3|Y1380_YERPE -            382   7.1e-06   24.8  15.0   1   3   1.4e-09   7.1e-06   24.8  15.0    41   184    36   177    14   194 0.83 Sugar (and other) transporter
DUF1228              PF06779.9     85 sp|Q8ZGC3|Y1380_YERPE -            382     0.015   15.3   0.7   1   4     3e-06     0.015   15.3   0.7    14    83    28    97    10    98 0.87 Protein of unknown function (DUF1228)
Trm112p              PF03966.11    68 sp|Q74VT6|Y1399_YERPE -             60     2e-09   37.6   0.4   1   1   4.9e-13   3.6e-09   36.8   0.4     1    68     2    41     2    41 0.97 Trm112p-like protein
TF_Zn_Ribbon         PF08271.7     43 sp|Q74VT6|Y1399_YERPE -             60    0.0016   17.7   0.4   1   1   3.2e-07    0.0024   17.1   0.4     3    23    11    30     9    31 0.92 TFIIB zinc-binding
DUF2057              PF09829.4    189 sp|Q8ZG70|Y1442_YERPE -            226   4.9e-47  160.0   0.0   1   1   3.8e-51   5.6e-47  159.8   0.0     2   189    22   219    21   219 0.98 Uncharacterized protein conserved in bacteria (DUF2057)
LrgA                 PF03788.9     96 sp|Q8D074|Y1514_YERPE -            135   4.7e-29   99.9  10.2   1   1   1.5e-32   5.7e-29   99.6  10.2     1    94    21   114    21   116 0.98 LrgA family
LrgB                 PF04172.11   215 sp|Q8D074|Y1514_YERPE -            135     0.031   13.4   5.1   1   1     1e-05     0.037   13.1   5.1    24   109    40   125    15   131 0.87 LrgB-like family
7TMR-DISM_7TM        PF07695.6    205 sp|Q8D074|Y1514_YERPE -            135      0.06   13.0  10.9   1   1     2e-05     0.074   12.7  10.9    42   149     7   117     3   122 0.74 7TM diverse intracellular signalling
Oxidored_q1_N        PF00662.15    62 sp|Q8D074|Y1514_YERPE -            135       1.4    8.5   6.4   3   3   0.00011      0.42   10.2   1.5    29    52   100   123    96   126 0.88 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
DUF496               PF04363.7     95 sp|Q8ZFW5|Y1560_YERPE -            105   1.9e-47  158.9   8.6   1   1   4.4e-51   2.2e-47  158.8   8.6     1    93     9   101     9   103 0.98 Protein of unknown function (DUF496)
YvfG                 PF09628.5     68 sp|Q8ZFW5|Y1560_YERPE -            105     0.019   15.1   0.1   1   1   6.3e-06     0.031   14.4   0.1     8    58    45    94    41   101 0.92 YvfG protein
FBP                  PF07299.6    208 sp|Q8ZFW5|Y1560_YERPE -            105     0.031   13.6   0.2   1   1   8.5e-06     0.042   13.1   0.2    42    89    16    63     3    69 0.89 Fibronectin-binding protein (FBP)
Maf                  PF02545.9    195 sp|P58635|Y1593_YERPE -            198   3.8e-49  166.4   0.0   1   1     6e-53   4.5e-49  166.2   0.0     2   190     3   189     2   196 0.96 Maf-like protein
NADPH_Ox             PF08414.5    100 sp|P58635|Y1593_YERPE -            198      0.04   13.9   0.0   1   1   8.8e-06     0.065   13.3   0.0    28    74   119   168    91   181 0.77 Respiratory burst NADPH oxidase
UPF0227              PF05728.7    187 sp|Q8ZFS2|Y1616_YERPE -            180   1.3e-71  240.2   0.0   1   1   9.8e-76   1.4e-71  240.0   0.0     1   186     1   177     1   178 0.99 Uncharacterised protein family (UPF0227)
DUF986               PF06173.7    149 sp|Q8ZFF7|Y1755_YERPE -            153   4.4e-70  234.2  11.4   1   1   3.3e-74   4.9e-70  234.1  11.4     1   149     4   152     4   152 0.99 Protein of unknown function (DUF986)
UPF0181              PF03701.9     52 sp|Q8ZFE0|Y1774_YERPE -             85   1.3e-27   94.7   3.7   1   1   1.1e-31   1.7e-27   94.4   3.7     1    51     1    51     1    52 0.97 Uncharacterised protein family (UPF0181)
ASCH                 PF04266.9    105 sp|Q8ZFD6|Y1778_YERPE -            102     9e-14   51.7   0.0   1   1     7e-18     1e-13   51.5   0.0     2   101     6    99     5   101 0.90 ASCH domain
UPF0270              PF06794.7     70 sp|Q8ZJD4|Y179_YERPE -             78   7.7e-34  115.2   0.0   1   1   5.8e-38   8.6e-34  115.1   0.0     1    69     1    69     1    70 0.98 Uncharacterised protein family (UPF0270)
PHP                  PF02811.14   175 sp|Q8ZEW6|Y2037_YERPE -            245   1.2e-15   57.7   0.0   1   1   2.2e-19   1.7e-15   57.2   0.0     1   169     4   164     4   174 0.92 PHP domain
RNase_P_p30          PF01876.11   150 sp|Q8ZEW6|Y2037_YERPE -            245     0.075   12.2   0.0   1   1   1.5e-05      0.11   11.7   0.0    34    94   113   172   104   185 0.74 RNase P subunit p30
Transcrip_reg        PF01709.15   234 sp|Q8ZEU8|Y2055_YERPE -            247   3.5e-95  317.6   0.0   1   1   2.6e-99   3.9e-95  317.4   0.0     1   233     5   237     5   238 0.99 Transcriptional regulator
CxxCxxCC             PF03692.10    85 sp|Q8ZES0|Y2083_YERPE -            148   1.4e-07   31.8   9.5   1   1   1.8e-11   2.7e-07   30.9   9.5     2    85    24    92    23    92 0.97 Putative zinc- or iron-chelating domain
DUF444               PF04285.7    421 sp|Q8ZEL2|Y2152_YERPE -            424  2.3e-193  642.6   1.4   1   1  1.7e-197  2.6e-193  642.4   1.4     1   420     1   421     1   422 1.00 Protein of unknown function (DUF444)
SEC-C                PF02810.10    21 sp|Q8ZEJ5|Y2172_YERPE -            154   2.3e-13   49.3  23.3   1   3   6.6e-12   4.9e-08   32.3   1.5     1    20     1    20     1    21 0.94 SEC-C motif
SEC-C                PF02810.10    21 sp|Q8ZEJ5|Y2172_YERPE -            154   2.3e-13   49.3  23.3   3   3   4.9e-10   3.6e-06   26.3  10.3     1    19   136   154   136   154 0.97 SEC-C motif
CW_binding_1         PF01473.15    19 sp|Q8ZEJ5|Y2172_YERPE -            154     0.077   13.1   0.1   1   1   1.7e-05      0.13   12.4   0.1     2    14   116   128   115   129 0.89 Putative cell wall binding repeat
DUF440               PF04269.7    103 sp|Q8ZEI3|Y2187_YERPE -            107   1.5e-47  159.8   1.5   1   1   1.1e-51   1.6e-47  159.7   1.5     2   103     5   107     1   107 0.98 Protein of unknown function, DUF440
UPF0259              PF06790.6    248 sp|Q8ZEH4|Y2199_YERPE -            256   1.3e-96  322.8  28.5   1   1    1e-100   1.5e-96  322.6  28.5     1   247     1   249     1   250 0.98 Uncharacterised protein family (UPF0259)
YceI                 PF04264.8    164 sp|Q8ZE68|Y2315_YERPE -            192   9.6e-38  129.7   0.2   1   1   1.5e-41   1.1e-37  129.5   0.2     2   162    26   187    25   189 0.91 YceI-like domain
DUF1912              PF08930.5     84 sp|Q8ZE68|Y2315_YERPE -            192      0.14   12.2   1.1   1   2   0.00011      0.84    9.7   0.2    35    73    26    64     9    71 0.83 Domain of unknown function (DUF1912)
DUF697               PF05128.7    162 sp|Q8ZE38|Y2347_YERPE -            353   5.4e-58  195.0   2.8   2   2   1.1e-61   1.6e-57  193.4   0.3     1   161   183   342   183   343 0.99 Domain of unknown function (DUF697)
Rhodanese            PF00581.15   113 sp|Q8ZDV4|Y2451_YERPE -            355   6.4e-18   65.1   0.1   2   2   1.3e-21   1.9e-17   63.6   0.0     2   112   138   233   137   234 0.84 Rhodanese-like domain
DUF336               PF03928.9    132 sp|Q8ZDM8|Y2534_YERPE -            171     8e-30  103.3   0.0   1   1   6.9e-34     1e-29  102.9   0.0     1   125    20   145    20   150 0.96 Domain of unknown function (DUF336)
YfbU                 PF03887.9    166 sp|Q8ZDJ9|Y2563_YERPE -            164   3.6e-77  257.6   2.4   1   1   2.7e-81     4e-77  257.4   2.4     1   166     1   164     1   164 1.00 YfbU domain
DUF412               PF04217.8    143 sp|Q8ZDJ8|Y2564_YERPE -            151   1.5e-59  199.9   0.4   1   1   2.3e-63   1.7e-59  199.7   0.4     1   142    10   149    10   150 0.99 Protein of unknown function, DUF412
DUF790               PF05626.6    379 sp|Q8ZDJ8|Y2564_YERPE -            151     0.021   13.3   0.0   1   1   3.6e-06     0.027   13.0   0.0    85   129   107   151   104   151 0.95 Protein of unknown function (DUF790)
A2M_N_2              PF07703.9    136 sp|Q8ZDJ2|Y2573_YERPE -           2004   4.6e-20   71.7   0.4   2   3   5.8e-21   1.4e-17   63.7   0.0     1   135  1101  1239  1101  1240 0.97 Alpha-2-macroglobulin family N-terminal region
MG1                  PF11974.3     97 sp|Q8ZDJ2|Y2573_YERPE -           2004   5.3e-15   55.7   0.6   1   1   2.3e-17   5.7e-14   52.4   0.0     2    95   624   725   623   727 0.96 Alpha-2-macroglobulin MG1 domain
A2M_N                PF01835.14    99 sp|Q8ZDJ2|Y2573_YERPE -           2004   1.5e-14   54.0   0.0   1   1   8.8e-17   2.2e-13   50.2   0.0     3    90   737   822   735   828 0.90 MG2 domain
A2M                  PF00207.17    92 sp|Q8ZDJ2|Y2573_YERPE -           2004     7e-09   35.1   0.1   2   2   9.4e-11   2.3e-07   30.2   0.0     3    83  1308  1385  1306  1397 0.91 Alpha-2-macroglobulin family
Big_5                PF13205.1    107 sp|Q8ZDJ2|Y2573_YERPE -           2004    0.0071   16.9   4.2   1   3   4.5e-05      0.11   13.0   0.1    45   107   164   224   122   224 0.66 Bacterial Ig-like domain
DUF493               PF04359.9     85 sp|Q8ZDG8|Y2600_YERPE -             87   3.8e-32  110.4   0.1   1   1   2.9e-36   4.2e-32  110.3   0.1     2    85     6    87     5    87 0.98 Protein of unknown function (DUF493)
LamB_YcsF            PF03746.11   242 sp|Q8ZD89|Y2700_YERPE -            245  2.9e-100  334.3   0.5   1   1  4.4e-104  3.3e-100  334.1   0.5     1   241     2   237     2   238 0.99 LamB/YcsF family
Epimerase_2          PF02350.14   346 sp|Q8ZD89|Y2700_YERPE -            245     0.065   11.9   0.0   1   1   1.2e-05     0.089   11.5   0.0    36    84   176   228   154   232 0.77 UDP-N-acetylglucosamine 2-epimerase
Smr                  PF01713.16    83 sp|Q8ZD43|Y2749_YERPE -            176   1.7e-17   63.3   0.4   1   1   1.7e-21   2.6e-17   62.7   0.4     1    81    98   171    98   173 0.97 Smr domain
NUDIX                PF00293.23   135 sp|Q8ZD12|Y2781_YERPE -            182   2.9e-16   59.3   0.3   1   1     4e-20   5.9e-16   58.3   0.3     1   124    37   155    37   167 0.84 NUDIX domain
Ivy                  PF08816.6    118 sp|P58483|Y2857_YERPE -            154   8.2e-52  174.1   0.8   1   1   6.7e-56   9.9e-52  173.9   0.8     1   118    35   152    35   152 0.99 Inhibitor of vertebrate lysozyme (Ivy)
Acetyltransf_1       PF00583.19    83 sp|Q8ZCG0|Y3031_YERPE -            141     5e-18   64.9   0.1   1   1   5.4e-21   7.3e-18   64.3   0.1     1    83    48   124    48   124 0.97 Acetyltransferase (GNAT) family
Acetyltransf_7       PF13508.1     79 sp|Q8ZCG0|Y3031_YERPE -            141   6.4e-11   42.2   0.0   1   1   6.8e-14   9.1e-11   41.7   0.0     3    78    43   124    41   125 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|Q8ZCG0|Y3031_YERPE -            141   1.1e-09   38.4   0.0   1   1     1e-12   1.4e-09   38.0   0.0    31   115    30   121    15   123 0.81 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|Q8ZCG0|Y3031_YERPE -            141   1.2e-09   37.7   0.0   1   1   1.3e-12   1.7e-09   37.2   0.0    22    81    67   127    52   130 0.90 FR47-like protein
Acetyltransf_9       PF13527.1    127 sp|Q8ZCG0|Y3031_YERPE -            141   1.1e-06   28.4   0.0   1   1   2.7e-08   3.6e-05   23.6   0.0     1   126     2   125     2   126 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|Q8ZCG0|Y3031_YERPE -            141   4.3e-06   26.6   0.0   1   1     4e-09   5.4e-06   26.3   0.0    36   144    32   131     3   136 0.80 Acetyltransferase (GNAT) domain
Acetyltransf_6       PF13480.1    142 sp|Q8ZCG0|Y3031_YERPE -            141   6.3e-06   26.2   0.0   1   1   6.3e-09   8.5e-06   25.7   0.0    73   134    45   106    34   113 0.92 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|Q8ZCG0|Y3031_YERPE -            141   0.00087   19.2   0.0   1   1     1e-06    0.0014   18.6   0.0     1   136     3   125     3   129 0.84 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|Q8ZCG0|Y3031_YERPE -            141    0.0011   19.1   0.0   1   1   1.1e-06    0.0015   18.6   0.0    58   140    45   122     1   124 0.70 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|Q8ZCG0|Y3031_YERPE -            141      0.11   12.4   0.1   1   1   0.00023      0.31   10.9   0.0    24    47    68    91    47   100 0.81 GCN5-related N-acetyl-transferase
DUF3749              PF12568.3    128 sp|Q8ZCG0|Y3031_YERPE -            141      0.13   11.8   0.0   1   1   0.00012      0.16   11.5   0.0    16    90    21    95    17   130 0.78 Acetyltransferase (GNAT) domain
DUF188               PF02639.9    130 sp|Q8ZCF8|Y3033_YERPE -            152   7.1e-53  177.4   0.1   1   1   5.6e-57   8.3e-53  177.2   0.1     2   129    18   145    17   146 0.99 Uncharacterized BCR, YaiI/YqxD family COG1671
UPF0370              PF13980.1     63 sp|Q8ZCD6|Y3055_YERPE -             64   2.7e-38  129.5   9.7   1   1   1.9e-42   2.9e-38  129.4   9.7     1    63     1    63     1    64 0.96 Uncharacterised protein family (UPF0370)
DUF441               PF04284.8    140 sp|Q74SD5|Y3057_YERPE -            150   9.1e-48  161.6  20.7   1   1   7.1e-52     1e-47  161.5  20.7     1   140     9   147     9   147 0.99 Protein of unknown function (DUF441)
YbaB_DNA_bd          PF02575.11    93 sp|Q8ZC96|Y3121_YERPE -            110   6.3e-37  125.3   7.5   1   1   1.9e-40   7.2e-37  125.1   7.5     1    93    11   103    11   103 0.99 YbaB/EbfC DNA-binding family
IIGP                 PF05049.8    376 sp|Q8ZC96|Y3121_YERPE -            110     0.021   13.6   0.4   1   1   8.3e-06     0.031   13.1   0.4    15    48     8    41     6    49 0.93 Interferon-inducible GTPase (IIGP)
DUF3138              PF11336.3    514 sp|Q8ZC96|Y3121_YERPE -            110      0.11   10.7   0.5   1   1     3e-05      0.11   10.6   0.5    28    95     8    77     4   104 0.72 Protein of unknown function (DUF3138)
DUF3602              PF12223.3     81 sp|Q8ZC96|Y3121_YERPE -            110      0.13   12.6   0.3   1   1   7.6e-05      0.28   11.5   0.1    34    64     3    32     2    41 0.69 Protein of unknown function (DUF3602)
DUF520               PF04461.8    160 sp|Q8ZC52|Y3170_YERPE -            163   2.9e-66  222.2   3.7   1   1   4.4e-70   3.3e-66  222.0   3.7     1   160     1   162     1   162 0.99 Protein of unknown function (DUF520)
DUF1508              PF07411.7     49 sp|Q8ZC52|Y3170_YERPE -            163    0.0051   16.2   0.1   1   1   1.3e-06    0.0099   15.2   0.1    17    46    84   114    83   117 0.83 Domain of unknown function (DUF1508)
DUF1255              PF06865.6     94 sp|Q8ZC17|Y3213_YERPE -             95   3.9e-34  116.7   0.0   1   1   5.8e-38   4.3e-34  116.6   0.0     1    94     1    94     1    94 0.99 Protein of unknown function (DUF1255)
EutQ                 PF06249.7    152 sp|Q8ZC17|Y3213_YERPE -             95     0.028   13.9   0.0   1   1   4.4e-06     0.032   13.7   0.0    78   142    26    90     9    94 0.80 Ethanolamine utilisation protein EutQ
DUF1100              PF06500.6    411 sp|Q8D170|Y3224_YERPE -            415  6.2e-225  746.3   0.0   1   1  2.3e-228    7e-225  746.1   0.0     1   410     1   414     1   415 0.99 Alpha/beta hydrolase of unknown function (DUF1100)
Abhydrolase_6        PF12697.2    228 sp|Q8D170|Y3224_YERPE -            415   3.8e-09   36.7   0.0   1   1   2.5e-12   7.5e-09   35.7   0.0     6   132   202   323   198   393 0.56 Alpha/beta hydrolase family
Abhydrolase_5        PF12695.2    145 sp|Q8D170|Y3224_YERPE -            415   1.8e-07   31.0   0.0   1   1     1e-10     3e-07   30.2   0.0     2   124   198   376   197   401 0.74 Alpha/beta hydrolase family
AXE1                 PF05448.7    320 sp|Q8D170|Y3224_YERPE -            415    0.0054   15.2   0.0   2   2   8.2e-06     0.024   13.1   0.0   161   208   252   300   241   334 0.90 Acetyl xylan esterase (AXE1)
Abhydrolase_7        PF12715.2    390 sp|Q8D170|Y3224_YERPE -            415    0.0099   14.8   0.0   1   1   6.2e-06     0.018   13.9   0.0   200   249   240   289   237   308 0.92 Abhydrolase family
UPF0231              PF06062.6    121 sp|Q8ZBJ5|Y3414_YERPE -            119   4.6e-43  145.9   0.2   1   1   3.4e-47   5.1e-43  145.8   0.2     1   121     1   118     1   118 0.99 Uncharacterised protein family (UPF0231)
GIY-YIG              PF01541.19    80 sp|Q8ZBE1|Y3475_YERPE -             95   2.4e-09   37.4   0.0   1   1     4e-13   2.9e-09   37.1   0.0     2    77     6    76     5    79 0.91 GIY-YIG catalytic domain
MUG113               PF13455.1     83 sp|Q8ZBE1|Y3475_YERPE -             95    0.0099   16.3   0.0   1   2   6.3e-05      0.47   10.9   0.0     4    32    21    56    20    67 0.80 Meiotically up-regulated gene 113
UPF0102              PF02021.12    93 sp|Q8ZB75|Y3549_YERPE -            117   6.2e-26   90.1   0.0   1   1   9.7e-30   7.2e-26   89.9   0.0     2    92    10   102     9   103 0.97 Uncharacterised protein family UPF0102
DUF4143              PF13635.1     90 sp|Q8ZB75|Y3549_YERPE -            117      0.02   15.0   0.0   1   1   3.7e-06     0.027   14.6   0.0    39    87     6    52     1    55 0.75 Domain of unknown function (DUF4143)
ATP_bind_2           PF03668.10   284 sp|Q8ZB41|Y3586_YERPE -            284  4.8e-144  478.6   0.0   1   1  3.3e-147  5.4e-144  478.4   0.0     1   284     1   282     1   282 0.99 P-loop ATPase protein family
AAA_18               PF13238.1    129 sp|Q8ZB41|Y3586_YERPE -            284   5.4e-05   23.5   0.0   1   2   4.3e-06     0.007   16.6   0.0     2   114     5   101     5   120 0.68 AAA domain
AAA_17               PF13207.1    121 sp|Q8ZB41|Y3586_YERPE -            284     0.013   16.3   0.1   1   1   2.2e-05     0.037   14.8   0.1     3    29     5    30     3   223 0.92 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|Q8ZB41|Y3586_YERPE -            284     0.027   13.9   0.0   1   1   3.9e-05     0.065   12.6   0.0    41    58     4    21     3    24 0.95 FtsK/SpoIIIE family
AAA_22               PF13401.1    131 sp|Q8ZB41|Y3586_YERPE -            284     0.061   13.4   0.1   1   1   7.1e-05      0.12   12.5   0.1     7    26     4    23     2   142 0.90 AAA domain
AAA_10               PF12846.2    304 sp|Q8ZB41|Y3586_YERPE -            284      0.12   11.8   0.4   1   2   0.00023      0.38   10.1   0.1     4    20     4    20     2    28 0.88 AAA-like domain
AAA_16               PF13191.1    185 sp|Q8ZB41|Y3586_YERPE -            284      0.19   11.6   1.8   1   1   0.00031      0.51   10.2   1.8    26    43     3    39     2   212 0.61 AAA ATPase domain
Maf                  PF02545.9    195 sp|P58636|Y3668_YERPE -            197     5e-60  201.9   0.0   1   1   3.9e-64   5.8e-60  201.7   0.0     3   188     4   185     2   192 0.97 Maf-like protein
DUF615               PF04751.9    158 sp|Q8ZAU5|Y3691_YERPE -            182   7.9e-61  204.3   6.9   1   1   1.3e-64   9.9e-61  204.0   6.9     2   158    21   176    19   176 0.99 Protein of unknown function (DUF615)
Mit_KHE1             PF10173.4    187 sp|Q8ZAU5|Y3691_YERPE -            182      0.04   13.7   0.3   1   1   9.2e-06     0.068   13.0   0.3    59   109    41   115    20   162 0.68 Mitochondrial K+-H+ exchange-related
DUF1328              PF07043.8     39 sp|Q7CG59|Y3749_YERPE -             53   1.6e-11   44.0  20.4   1   1     5e-15   1.9e-11   43.7  20.4     1    39     6    44     6    44 0.99 Protein of unknown function (DUF1328)
Pox_A14              PF05767.7     92 sp|Q7CG59|Y3749_YERPE -             53     0.045   13.7   3.6   1   1   1.4e-05      0.05   13.5   3.6    16    61     3    44     1    52 0.77 Poxvirus virion envelope protein A14
DUF3784              PF12650.2     97 sp|Q7CG59|Y3749_YERPE -             53     0.068   13.1   4.0   1   1   2.2e-05     0.081   12.8   4.0    50    95     1    51     1    53 0.75 Domain of unknown function (DUF3784)
UPF0261              PF06792.6    404 sp|Q8ZAG3|Y3839_YERPE -            405  2.7e-167  556.3   0.1   1   1  4.2e-171  3.1e-167  556.1   0.1     3   403     4   401     2   402 0.99 Uncharacterised protein family (UPF0261)
PD40                 PF07676.7     39 sp|Q8ZAG3|Y3839_YERPE -            405      0.12   12.0   0.0   1   1   3.4e-05      0.25   11.0   0.0    16    30    58    72    45    76 0.88 WD40-like Beta Propeller Repeat
Asp-Al_Ex            PF06826.7    169 sp|Q8Z9V7|Y4083_YERPE -            552   4.5e-93  309.3  44.9   1   2   9.8e-53   7.2e-49  165.5  21.9     1   168    10   179    10   180 0.99 Predicted Permease Membrane Region
Asp-Al_Ex            PF06826.7    169 sp|Q8Z9V7|Y4083_YERPE -            552   4.5e-93  309.3  44.9   2   2   5.8e-48   4.3e-44  149.9  15.0     2   168   374   546   373   547 0.98 Predicted Permease Membrane Region
TrkA_C               PF02080.16    71 sp|Q8Z9V7|Y4083_YERPE -            552   6.3e-19   67.3   1.9   1   2   1.8e-11   1.4e-07   31.0   0.1     9    69   213   273   206   275 0.88 TrkA-C domain
TrkA_C               PF02080.16    71 sp|Q8Z9V7|Y4083_YERPE -            552   6.3e-19   67.3   1.9   2   2   7.2e-13   5.3e-09   35.5   0.2     3    70   293   359   291   360 0.90 TrkA-C domain
Enoyl_reductase      PF12241.3    237 sp|Q8Z9U1|Y4104_YERPE -            399  1.2e-109  364.8   0.1   1   1  4.1e-113  1.5e-109  364.5   0.1     2   236    82   317    81   318 0.99 Trans-2-enoyl-CoA reductase catalytic region
Eno-Rase_NADH_b      PF12242.3     78 sp|Q8Z9U1|Y4104_YERPE -            399   2.8e-38  129.5   0.2   1   1   1.8e-41   6.5e-38  128.3   0.2     1    77     2    79     2    80 0.98 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
Eno-Rase_FAD_bd      PF07055.7     65 sp|Q8Z9U1|Y4104_YERPE -            399   2.4e-30  104.2   3.0   1   1   6.6e-34   2.4e-30  104.2   3.0     2    65   324   387   323   387 0.98 Enoyl reductase FAD binding domain
SBP_bac_5            PF00496.17   374 sp|Q8Z9U1|Y4104_YERPE -            399     0.033   13.0   0.1   1   1   1.3e-05     0.048   12.4   0.1   256   352    85   196    75   218 0.75 Bacterial extracellular solute-binding proteins, family 5 Middle
DUF328               PF03883.9    237 sp|Q8ZIN3|Y462_YERPE -            258  2.2e-100  334.8   0.0   1   1  1.6e-104  2.4e-100  334.6   0.0     1   236     1   244     1   245 0.99 Protein of unknown function (DUF328)
DUF3815              PF12821.2    130 sp|Q74Q23|Y485_YERPE -            153   1.6e-28   99.2  12.5   1   1   2.4e-32   1.8e-28   99.0  12.5     1   128    11   143    11   145 0.94 Protein of unknown function (DUF3815)
DUF1212              PF06738.7    193 sp|Q74Q23|Y485_YERPE -            153   0.00057   19.3   8.4   1   2   7.8e-08   0.00057   19.3   8.4   107   193    13    95     6    95 0.86 Protein of unknown function (DUF1212)
DUF1190              PF06693.6    165 sp|Q7CGH1|Y661_YERPE -            227   5.8e-56  189.0  10.3   1   1     1e-59   7.6e-56  188.6  10.3     2   164    40   211    39   212 0.96 Protein of unknown function (DUF1190)
DUF1482              PF07358.6     57 sp|Q7CGH1|Y661_YERPE -            227      0.87    9.2   3.3   1   2   5.9e-05      0.44   10.1   0.2     7    38    30    62    25    69 0.83 Protein of unknown function (DUF1482)
Radical_SAM_N        PF08497.5    302 sp|Q8CZS4|Y674_YERPE -            781    2e-152  506.3   0.0   1   1  7.6e-156  2.8e-152  505.8   0.0     1   302    28   375    28   375 0.99 Radical SAM N-terminal
DUF3362              PF11842.3    151 sp|Q8CZS4|Y674_YERPE -            781   2.3e-41  141.2   6.3   1   1   2.2e-44   8.2e-41  139.4   6.3     1   138   590   727   590   778 0.88 Domain of unknown function (DUF3362)
Radical_SAM          PF04055.16   166 sp|Q8CZS4|Y674_YERPE -            781   7.5e-21   75.0   0.0   2   2   1.1e-23   4.1e-20   72.6   0.1     1   165   376   581   376   582 0.96 Radical SAM superfamily
B12-binding          PF02310.14   121 sp|Q8CZS4|Y674_YERPE -            781     0.001   18.9   0.0   1   2   1.6e-05      0.06   13.2   0.0     3    34    48    79    46   109 0.87 B12 binding domain
Sdh5                 PF03937.11    74 sp|Q8ZHJ5|Y897_YERPE -             88   5.1e-27   93.3   0.3   1   1   7.8e-31   5.8e-27   93.1   0.3     1    74     5    77     5    77 0.97 Flavinator of succinate dehydrogenase
DUF866               PF05907.8    161 sp|Q8ZHJ5|Y897_YERPE -             88      0.04   13.4   0.0   1   1   5.8e-06     0.043   13.3   0.0    60   113     6    60     2    77 0.86 Eukaryotic protein of unknown function (DUF866)
UPF0149              PF03695.8    178 sp|Q8ZHI2|Y911_YERPE -            192   5.8e-38  130.5   4.6   1   1   1.4e-41     7e-38  130.2   4.6     5   176    14   178     9   180 0.93 Uncharacterised protein family (UPF0149)
Dna2                 PF08696.6    209 sp|Q8ZHI2|Y911_YERPE -            192      0.08   12.2   0.0   2   2   3.1e-05      0.16   11.3   0.0   105   184    90   170    69   181 0.78 DNA replication factor Dna2
DUF179               PF02622.10   161 sp|Q8ZHG3|Y936_YERPE -            187   1.3e-52  177.6   0.0   1   1     1e-56   1.5e-52  177.4   0.0     1   161    11   174    11   174 0.93 Uncharacterized ACR, COG1678
DUF167               PF02594.11    78 sp|Q8ZHF5|Y944_YERPE -             96   6.6e-28   96.4   0.3   1   1   5.1e-32   7.6e-28   96.2   0.3     2    76     8    81     7    83 0.97 Uncharacterised ACR, YggU family COG1872
DUF329               PF03884.9     57 sp|Q8ZBH8|YACG_YERPE -             68   2.6e-25   87.7   5.5   1   1   8.5e-29   3.2e-25   87.4   5.5     2    56     7    63     3    64 0.94 Domain of unknown function (DUF329)
Zn_Tnp_IS1595        PF12760.2     46 sp|Q8ZBH8|YACG_YERPE -             68     0.028   14.2   3.6   1   1   1.2e-05     0.043   13.6   3.6    19    44     8    34     3    35 0.87 Transposase zinc-ribbon domain
HypA                 PF01155.14   113 sp|Q8ZBH8|YACG_YERPE -             68      0.09   12.4   0.8   1   1   2.8e-05       0.1   12.2   0.8    65   104     2    45     1    51 0.77 Hydrogenase expression/synthesis hypA family
UPF0054              PF02130.12   145 sp|Q8ZDF0|YBEY_YERPE -            157   2.1e-40  137.3   0.0   1   1   1.6e-44   2.4e-40  137.1   0.0    19   145    24   145    10   145 0.89 Uncharacterized protein family UPF0054
IspA                 PF04279.10   176 sp|Q8ZEH5|YCIB_YERPE -            180   2.8e-70  235.8  24.3   1   1   8.5e-74   3.2e-70  235.6  24.3     1   176     1   176     1   176 0.99 Intracellular septation protein A
DUF308               PF03729.8     72 sp|Q8ZEH5|YCIB_YERPE -            180         7    6.7  21.6   2   2   8.2e-05       0.3   11.0   4.8    14    68   109   167   109   171 0.70 Short repeat of unknown function (DUF308)
YebF                 PF13995.1     89 sp|Q8ZFD5|YEBF_YERPE -            136   2.5e-40  136.3   0.4   1   1     2e-44     3e-40  136.1   0.4     1    89    27   115    27   115 0.98 YebF-like protein
Oxidored_molyb       PF00174.14   169 sp|Q8ZAW9|YEDY_YERPE -            366   2.2e-37  128.0   0.0   1   1   4.6e-41   3.4e-37  127.4   0.0    11   168   140   300   129   301 0.93 Oxidoreductase molybdopterin binding domain
PsbQ                 PF05757.6    203 sp|Q8ZAW9|YEDY_YERPE -            366     0.031   13.7   0.2   1   1     7e-06     0.052   12.9   0.2     3    75    25    97    14   112 0.74 Oxygen evolving enhancer protein 3 (PsbQ)
Ferric_reduct        PF01794.14   125 sp|Q8ZAX0|YEDZ_YERPE -            206   3.5e-16   59.4   8.5   1   2   2.4e-20   3.5e-16   59.4   8.5     2   124    48   161    47   162 0.92 Ferric reductase like transmembrane component
DUF1508              PF07411.7     49 sp|Q8ZCV6|YEGP_YERPE -            112   2.6e-46  154.8   4.6   1   2   7.3e-28   2.7e-24   84.3   1.4     1    48    11    58    11    59 0.96 Domain of unknown function (DUF1508)
DUF1508              PF07411.7     49 sp|Q8ZCV6|YEGP_YERPE -            112   2.6e-46  154.8   4.6   2   2   4.7e-24   1.8e-20   72.1   0.1     2    49    63   110    62   110 0.96 Domain of unknown function (DUF1508)
Pax7                 PF12360.3     45 sp|Q8ZCV6|YEGP_YERPE -            112    0.0012   19.0   0.1   1   1   8.3e-07    0.0031   17.7   0.1    12    43    72   104    68   105 0.91 Paired box protein 7
RicinB_lectin_2      PF14200.1    105 sp|Q8ZCV6|YEGP_YERPE -            112      0.09   13.1   0.4   1   1   4.1e-05      0.15   12.4   0.4     4    81     5    85     3   101 0.73 Ricin-type beta-trefoil lectin domain-like
DAGK_cat             PF00781.19   130 sp|Q7CJL3|YEGS_YERPE -            296   4.4e-23   81.1   0.3   1   1   8.6e-27   6.4e-23   80.6   0.3     2   128     4   127     3   129 0.87 Diacylglycerol kinase catalytic domain
NAD_kinase           PF01513.16   285 sp|Q7CJL3|YEGS_YERPE -            296    0.0028   16.4   0.0   1   1   5.4e-07     0.004   15.9   0.0    63   128    27   112     8   126 0.74 ATP-NAD kinase
TroA                 PF01297.12   256 sp|Q56952|YFEA_YERPE -            311   1.3e-72  244.1   0.0   1   1     1e-76   1.5e-72  243.9   0.0     1   255    44   308    44   309 0.92 Periplasmic solute binding protein family
ABC_tran             PF00005.22   137 sp|Q56953|YFEB_YERPE -            296   2.7e-28   98.9   0.0   1   1   4.5e-31   4.2e-28   98.3   0.0     3   136    29   174    27   175 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|Q56953|YFEB_YERPE -            296   7.9e-15   55.5   0.5   1   2   7.2e-07   0.00067   19.7   0.6     2    23    40    61    39    84 0.82 AAA domain
AAA_21               PF13304.1    303 sp|Q56953|YFEB_YERPE -            296   7.9e-15   55.5   0.5   2   2   2.4e-11   2.2e-08   34.4   0.0   148   298    72   205    62   207 0.86 AAA domain
SMC_N                PF02463.14   220 sp|Q56953|YFEB_YERPE -            296   3.1e-06   26.5   0.6   1   1   3.3e-08   3.1e-05   23.3   0.6    26   198    39   204    27   222 0.72 RecF/RecN/SMC N terminal domain
SbcCD_C              PF13558.1     90 sp|Q56953|YFEB_YERPE -            296   8.1e-05   22.4   0.1   1   1   5.5e-07   0.00051   19.9   0.1    25    89   139   190   124   191 0.80 Putative exonuclease SbcCD, C subunit
AAA_15               PF13175.1    415 sp|Q56953|YFEB_YERPE -            296   0.00017   20.7   0.0   2   2   0.00014      0.13   11.2   0.0   370   410   164   204   155   206 0.90 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q56953|YFEB_YERPE -            296    0.0002   20.7   0.3   1   1     5e-07   0.00047   19.6   0.3    22    49    36    63    19    71 0.80 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|Q56953|YFEB_YERPE -            296    0.0033   17.7   0.0   1   1   4.6e-06    0.0042   17.4   0.0    20    41    38    59    21   165 0.90 AAA domain
DUF258               PF03193.11   161 sp|Q56953|YFEB_YERPE -            296    0.0034   16.5   0.1   1   1   6.5e-06    0.0061   15.7   0.1    19    71    20    73    10    92 0.78 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q56953|YFEB_YERPE -            296    0.0096   15.8   0.2   1   2   9.4e-05     0.087   12.7   0.0     3    20    41    58    39    99 0.84 AAA domain
AAA_22               PF13401.1    131 sp|Q56953|YFEB_YERPE -            296      0.02   15.0   1.0   1   2   0.00062      0.57   10.3   0.1     3    26    36    59    33    87 0.80 AAA domain
AAA_16               PF13191.1    185 sp|Q56953|YFEB_YERPE -            296     0.032   14.2   0.9   1   1   8.8e-05     0.082   12.8   0.9    19    62    32    72    24   201 0.75 AAA ATPase domain
NACHT                PF05729.7    166 sp|Q56953|YFEB_YERPE -            296     0.032   13.8   0.5   1   1   8.2e-05     0.076   12.6   0.1     3    24    40    61    38    73 0.87 NACHT domain
MMR_HSR1             PF01926.18   116 sp|Q56953|YFEB_YERPE -            296     0.073   13.0   0.5   1   1   0.00012      0.11   12.4   0.5     2    22    40    60    39   203 0.85 50S ribosome-binding GTPase
MobB                 PF03205.9    140 sp|Q56953|YFEB_YERPE -            296      0.11   12.1   0.4   1   1   0.00023      0.22   11.2   0.4     2    24    39    61    38   134 0.93 Molybdopterin guanine dinucleotide synthesis protein B
NB-ARC               PF00931.17   287 sp|Q56953|YFEB_YERPE -            296      0.19   10.5   1.2   1   2   0.00057      0.53    9.0   0.5    20    40    38    58    31    67 0.88 NB-ARC domain
AAA_10               PF12846.2    304 sp|Q56953|YFEB_YERPE -            296      0.21   11.0   1.5   1   2   0.00087       0.8    9.0   1.2     4    22    40    58    37    62 0.88 AAA-like domain
ABC-3                PF00950.12   258 sp|Q56954|YFEC_YERPE -            294   3.8e-89  298.3  31.7   1   1   5.8e-93   4.3e-89  298.2  31.7     1   257    10   265    10   266 0.99 ABC 3 transport family
FecCD                PF01032.13   311 sp|Q56954|YFEC_YERPE -            294   3.6e-10   39.1  32.7   1   1   9.9e-14   7.4e-10   38.1  32.7    94   287    37   245     4   266 0.77 FecCD transport family
ABC-3                PF00950.12   258 sp|Q56955|YFED_YERPE -            297   2.5e-98  328.4  30.1   1   1  5.8e-102   2.9e-98  328.2  30.1     2   257    14   268    13   269 0.99 ABC 3 transport family
FecCD                PF01032.13   311 sp|Q56955|YFED_YERPE -            297   5.8e-09   35.1  29.7   1   1   2.2e-12   1.1e-08   34.3  29.3    94   307    55   264    22   271 0.81 FecCD transport family
GCV_T                PF01571.16   211 sp|Q7CGT3|YGFZ_YERPE -            330     4e-28   98.2   0.1   1   1   9.8e-32   7.2e-28   97.3   0.1     4   209    25   218    22   220 0.90 Aminomethyltransferase folate-binding domain
GCV_T_C              PF08669.6     95 sp|Q7CGT3|YGFZ_YERPE -            330    0.0097   15.9   0.0   1   1   2.4e-06     0.018   15.0   0.0     1    52   228   282   228   288 0.81 Glycine cleavage T-protein C-terminal barrel domain
YidC_periplas        PF14849.1    270 sp|Q8Z9U3|YIDC_YERPE -            546   1.2e-76  258.2   2.0   1   1   3.7e-80   1.8e-76  257.5   2.0     2   270    61   342    60   342 0.92 YidC periplasmic domain
60KD_IMP             PF02096.15   198 sp|Q8Z9U3|YIDC_YERPE -            546   2.1e-66  223.3  14.1   2   2   4.3e-70   2.1e-66  223.3  14.1     1   195   351   532   351   535 0.94 60Kd inner membrane protein
DUF2427              PF10348.4    105 sp|Q8Z9U3|YIDC_YERPE -            546     0.033   13.7   0.9   1   1   6.6e-06     0.033   13.7   0.9     5    51   480   526   477   532 0.88 Domain of unknown function (DUF2427)
Haemolytic           PF01809.13    68 sp|P61475|YIDD_YERPE -             85   2.4e-32  110.3   0.1   1   1   1.8e-36   2.7e-32  110.1   0.1     2    68     9    75     8    75 0.98 Haemolytic domain
YihI                 PF04220.7    169 sp|Q8ZJR9|YIHI_YERPE -            188   4.5e-55  185.5  14.4   1   1   1.1e-58   5.4e-55  185.2  14.4     9   168    18   179     9   180 0.93 Der GTPase activator (YihI)
DUF501               PF04417.7    139 sp|Q8ZJR9|YIHI_YERPE -            188       0.2   11.5   0.1   2   2     4e-05       0.2   11.5   0.1     9    78    79   149    72   174 0.81 Protein of unknown function (DUF501)
Serendipity_A        PF05482.7    552 sp|Q8ZJR9|YIHI_YERPE -            188      0.23    9.8   1.3   1   1   6.3e-05      0.31    9.4   1.3   125   180   127   180   118   184 0.79 Serendipity locus alpha protein (SRY-A)
HHA                  PF05321.6     57 sp|P0A3X0|YMOA_YERPE -             67   1.3e-31  108.5   0.2   1   1   9.7e-36   1.4e-31  108.3   0.2     1    57     8    64     8    64 0.99 Haemolysin expression modulating protein
YopE_N               PF09020.5    126 sp|P31493|YOPE_YERPE -            219   3.2e-83  276.0   9.2   1   1   8.2e-87   6.1e-83  275.1   9.2     1   126     1   126     1   126 1.00 YopE, N terminal
YopE                 PF03545.8     70 sp|P31493|YOPE_YERPE -            219   1.1e-31  108.5   0.2   1   1   3.4e-35   2.5e-31  107.4   0.2     1    70   127   195   127   195 0.98 Yersinia virulence determinant (YopE)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   2   8   4.6e-06    0.0076   15.8   5.3     1    43    91   130    91   132 0.87 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   3   8   6.9e-08   0.00011   21.6   3.9     3    43   133   172   131   173 0.95 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   4   8   1.4e-07   0.00023   20.6   1.1     1    42   173   213   173   215 0.92 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   5   8   8.2e-07    0.0013   18.2   2.3     3    43   217   256   216   257 0.91 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   6   8     4e-06    0.0066   16.0   4.1     1    39   257   312   257   316 0.66 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   7   8   3.8e-06    0.0062   16.1   4.5     1    43   297   336   297   337 0.85 Leucine Rich repeats (2 copies)
LRR_4                PF12799.2     44 sp|P17778|YOPM_YERPE -            409   1.9e-27   94.3  62.1   8   8   2.2e-08   3.6e-05   23.2   1.8     1    43   317   376   317   377 0.73 Leucine Rich repeats (2 copies)
TTSSLRR              PF12468.3     46 sp|P17778|YOPM_YERPE -            409   1.3e-16   59.8   2.4   1   1   1.4e-19   2.2e-16   59.0   2.4     2    46    19    63    18    63 0.97 Type III secretion system leucine rich repeat protein
LRR_1                PF00560.28    22 sp|P17778|YOPM_YERPE -            409   1.4e-15   54.9  48.0   4  15   0.00052      0.85    9.8   0.1     2    21   133   151   132   152 0.93 Leucine Rich Repeat
LRR_1                PF00560.28    22 sp|P17778|YOPM_YERPE -            409   1.4e-15   54.9  48.0  13  15   0.00023      0.38   10.9   0.2     1    17   318   334   318   337 0.89 Leucine Rich Repeat
LRR_7                PF13504.1     17 sp|P17778|YOPM_YERPE -            409   4.1e-14   50.2  42.9  11  13   0.00016      0.26   11.6   0.1     1    17   317   333   317   333 0.95 Leucine rich repeat
LRR_8                PF13855.1     61 sp|P17778|YOPM_YERPE -            409   1.3e-09   37.6  39.5   2   8   7.2e-05      0.12   12.1   1.9     1    42   131   170   131   171 0.94 Leucine rich repeat
LRR_8                PF13855.1     61 sp|P17778|YOPM_YERPE -            409   1.3e-09   37.6  39.5   5   8   0.00043       0.7    9.6   0.7     3    59   239   287   237   289 0.83 Leucine rich repeat
LRR_8                PF13855.1     61 sp|P17778|YOPM_YERPE -            409   1.3e-09   37.6  39.5   6   8   0.00018       0.3   10.8   1.2     1    61   257   309   257   309 0.83 Leucine rich repeat
LRR_8                PF13855.1     61 sp|P17778|YOPM_YERPE -            409   1.3e-09   37.6  39.5   7   8     2e-05     0.032   13.9   2.0     1    41   297   333   297   336 0.91 Leucine rich repeat
HrpJ                 PF07201.6    166 sp|P68640|YOPN_YERPE -            293     4e-37  127.7   0.8   1   1   1.6e-40     4e-37  127.7   0.8     5   166    60   223    57   223 0.96 HrpJ-like domain
COG2                 PF06148.6    133 sp|P68640|YOPN_YERPE -            293     0.032   14.0   3.0   1   1   1.2e-05      0.03   14.1   1.5    60   124    42   112    25   123 0.92 COG (conserved oligomeric Golgi) complex component, COG2
DUF3802              PF12290.3    114 sp|P68640|YOPN_YERPE -            293     0.045   14.0   1.0   1   1   3.6e-05     0.089   13.1   1.0    26   106    37   113    24   121 0.84 Protein of unknown function (DUF3802)
Laminin_II           PF06009.7    138 sp|P68640|YOPN_YERPE -            293     0.065   12.9   1.9   1   1   5.1e-05      0.13   12.0   1.9    27    87    43   106    22   123 0.67 Laminin Domain II
Phage_GPO            PF05929.6    276 sp|P68640|YOPN_YERPE -            293     0.071   12.3   0.4   1   1   4.5e-05      0.11   11.7   0.4   172   255    49   129    33   144 0.72 Phage capsid scaffolding protein (GPO) serine peptidase
Peptidase_C58        PF03543.9    204 sp|O68703|YOPT_YERPE -            322   2.3e-68  229.6   1.0   2   2   3.9e-72   2.9e-68  229.4   0.1     1   203   103   319   103   320 0.98 Yersinia/Haemophilus virulence surface antigen
TMF_DNA_bd           PF12329.3     74 sp|O68703|YOPT_YERPE -            322      0.21   11.4   1.1   1   1   5.4e-05       0.4   10.5   1.1    28    61    41    74    39    80 0.88 TATA element modulatory factor 1 DNA binding
Rac1                 PF09632.5    297 sp|Q9RI12|YPKA_YERPE -            732  7.5e-176  583.3   8.8   1   1  4.3e-179  1.1e-175  582.7   8.8     1   297   436   732   436   732 1.00 Rac1-binding domain
Pkinase              PF00069.20   260 sp|Q9RI12|YPKA_YERPE -            732   1.5e-12   47.2   0.0   1   1   1.1e-15   2.7e-12   46.3   0.0    48   259   176   407   144   408 0.75 Protein kinase domain
APH                  PF01636.18   239 sp|Q9RI12|YPKA_YERPE -            732   1.3e-05   25.0   0.5   2   3   5.3e-08   0.00013   21.7   0.0   124   194   208   292   192   296 0.74 Phosphotransferase enzyme family
Choline_kinase       PF01633.15   211 sp|Q9RI12|YPKA_YERPE -            732     0.048   13.2   0.0   1   1     5e-05      0.12   11.8   0.0    74   168   192   289   152   291 0.84 Choline/ethanolamine kinase
YrbL-PhoP_reg        PF10707.4    199 sp|Q9RI12|YPKA_YERPE -            732     0.064   12.5   0.0   1   1   8.3e-05      0.21   10.9   0.0    40   165   155   289   146   292 0.65 PhoP regulatory network protein YrbL
YscJ_FliF            PF01514.12   207 sp|P69972|YSCJ_YERPE -            244   4.3e-71  238.3   0.8   1   1   3.8e-75   5.6e-71  237.9   0.8    12   201     6   195     1   199 0.96 Secretory protein of YscJ/FliF family
Flg_hook             PF02120.11    85 sp|P68587|YSCP_YERPE -            455   4.2e-12   45.5   1.0   1   1   4.9e-16   7.3e-12   44.7   0.7     6    84   364   439   359   441 0.89 Flagellar hook-length control protein FliK
SpoA                 PF01052.15    77 sp|P42713|YSCQ_YERPE -            307   2.3e-23   81.6   0.2   1   2   3.9e-05      0.57    9.8   0.0     9    51   156   200   153   205 0.79 Surface presentation of antigens (SPOA)
SpoA                 PF01052.15    77 sp|P42713|YSCQ_YERPE -            307   2.3e-23   81.6   0.2   2   2   1.2e-23   1.8e-19   69.1   0.3     3    74   231   302   230   304 0.97 Surface presentation of antigens (SPOA)
FliP                 PF00813.15   194 sp|P69980|YSCR_YERPE -            217   2.9e-73  245.7  11.4   1   1   2.3e-77   3.4e-73  245.5  11.4     1   194    13   212    13   212 0.94 FliP family
Bac_export_3         PF01313.14    76 sp|P69982|YSCS_YERPE -             88   1.4e-29  101.6   9.0   1   1   3.2e-33   1.6e-29  101.3   9.0     2    75     5    78     4    79 0.97 Bacterial export proteins, family 3
Ocular_alb           PF02101.10   405 sp|P69982|YSCS_YERPE -             88    0.0011   17.7   0.5   1   1   2.3e-07    0.0011   17.6   0.5   192   262     6    73     2    86 0.88 Ocular albinism type 1 protein
Bac_export_1         PF01311.15   249 sp|P69984|YSCT_YERPE -            261   1.9e-79  266.4  26.4   1   1   1.5e-83   2.3e-79  266.2  26.4     7   248    10   252     5   253 0.96 Bacterial export proteins, family 1
Bac_export_2         PF01312.14   343 sp|P69986|YSCU_YERPE -            354  1.5e-137  458.0   3.8   1   1  1.2e-141  1.7e-137  457.9   3.8     1   342     1   341     1   342 1.00 FlhB HrpN YscU SpaS Family
Hemerythrin          PF01814.18   133 sp|Q8ZB88|YTFE_YERPE -            221   2.4e-27   95.7   0.8   2   2   3.9e-31   2.9e-27   95.4   0.1     5   133    80   217    76   217 0.97 Hemerythrin HHE cation binding domain
ScdA_N               PF04405.9     56 sp|Q8ZB88|YTFE_YERPE -            221   9.4e-20   69.7   0.1   1   1   2.7e-23     2e-19   68.7   0.1     2    56     5    59     4    59 0.97 Domain of Unknown function (DUF542)
DUF905               PF06006.7     71 sp|Q7ARC3|YUBL_YERPE -             76   2.8e-38  129.1   0.3   1   1   4.2e-42   3.1e-38  128.9   0.3     2    71     6    74     5    74 0.98 Bacterial protein of unknown function (DUF905)
DUF4240              PF14024.1    128 sp|Q7ARC3|YUBL_YERPE -             76     0.052   13.3   0.0   1   1   8.7e-06     0.065   13.0   0.0    56    91    17    51     7    58 0.86 Protein of unknown function (DUF4240)
ZapA                 PF05164.8     89 sp|Q0WIC8|ZAPA_YERPE -            109   2.9e-18   65.5   0.7   1   1   1.2e-21   3.6e-18   65.3   0.7     2    89     6    91     5    91 0.98 Cell division protein ZapA
Bac_rhamnosid        PF05592.6    509 sp|Q0WIC8|ZAPA_YERPE -            109     0.017   13.3   0.1   1   1   6.8e-06      0.02   13.1   0.1   255   330    30   104    16   108 0.82 Bacterial alpha-L-rhamnosidase
DUF3878              PF12994.2    299 sp|Q0WIC8|ZAPA_YERPE -            109     0.051   12.7   0.2   1   1     2e-05     0.058   12.5   0.2   225   261    60    98    23   105 0.70 Domain of unknown function, E. rectale Gene description (DUF3878)
SecA_DEAD            PF07517.9    266 sp|Q0WIC8|ZAPA_YERPE -            109     0.053   12.8   0.5   1   1   2.1e-05     0.062   12.5   0.5    29    96    25    92    15   102 0.86 SecA DEAD-like domain
SoxY                 PF13501.1    111 sp|Q0WIC8|ZAPA_YERPE -            109     0.069   13.2   0.0   1   1   2.9e-05     0.087   12.8   0.0    34    92    41    97    20   105 0.87 Sulfur oxidation protein SoxY
DUF904               PF06005.7     72 sp|Q7CLC9|ZAPB_YERPE -             79   2.8e-29  101.2  10.2   1   1   4.5e-32   3.2e-29  101.0  10.2     1    72     1    79     1    79 0.98 Protein of unknown function (DUF904)
PspA_IM30            PF04012.7    221 sp|Q7CLC9|ZAPB_YERPE -             79   0.00052   19.4   6.7   1   1   8.3e-07   0.00059   19.2   6.7    17    83    12    78     6    79 0.95 PspA/IM30 family
Seryl_tRNA_N         PF02403.17   108 sp|Q7CLC9|ZAPB_YERPE -             79    0.0021   18.0   5.6   1   1   3.5e-06    0.0025   17.8   5.6    38    99    20    78     4    79 0.87 Seryl-tRNA synthetase N-terminal domain
IncA                 PF04156.9    191 sp|Q7CLC9|ZAPB_YERPE -             79     0.011   15.3   7.0   1   1   1.7e-05     0.012   15.2   7.0    78   147     8    77     3    79 0.88 IncA protein
DUF964               PF06133.6    108 sp|Q7CLC9|ZAPB_YERPE -             79     0.012   15.6   5.9   1   1   1.8e-05     0.013   15.5   5.9    34    95    12    74     7    79 0.84 Protein of unknown function (DUF964)
DUF972               PF06156.8    107 sp|Q7CLC9|ZAPB_YERPE -             79     0.017   15.4   8.2   1   1   7.4e-05     0.052   13.8   8.2     7    66     3    62     2    78 0.76 Protein of unknown function (DUF972)
Herpes_UL6           PF01763.11   557 sp|Q7CLC9|ZAPB_YERPE -             79     0.024   12.8   2.8   1   1   3.7e-05     0.026   12.7   2.8   363   416     4    57     1    78 0.77 Herpesvirus UL6 like
DivIVA               PF05103.8    131 sp|Q7CLC9|ZAPB_YERPE -             79     0.032   14.2   6.1   1   2   0.00029       0.2   11.6   1.4    28    59    14    45     6    51 0.85 DivIVA protein
DivIC                PF04977.10    80 sp|Q7CLC9|ZAPB_YERPE -             79     0.066   12.7   9.7   1   2   0.00012     0.084   12.3   3.1    20    56    14    50     5    51 0.80 Septum formation initiator
Mnd1                 PF03962.10   188 sp|Q7CLC9|ZAPB_YERPE -             79     0.083   12.5   5.4   1   1   0.00014     0.096   12.3   5.4    64   127     6    70     2    78 0.74 Mnd1 family
DUF349               PF03993.7     77 sp|Q7CLC9|ZAPB_YERPE -             79     0.091   12.9   4.1   1   1   0.00019      0.13   12.4   4.1    19    63    31    76     7    78 0.86 Domain of Unknown Function (DUF349)
APG6                 PF04111.7    315 sp|Q7CLC9|ZAPB_YERPE -             79      0.11   11.5   6.4   1   1   0.00017      0.12   11.4   6.4    18    80    13    69     3    79 0.33 Autophagy protein Apg6
CtIP_N               PF10482.4    120 sp|Q7CLC9|ZAPB_YERPE -             79      0.12   12.1   8.6   1   2   0.00034      0.24   11.2   2.1    86   120     8    42     4    42 0.92 Tumour-suppressor protein CtIP N-terminal domain
Atg14                PF10186.4    302 sp|Q7CLC9|ZAPB_YERPE -             79      0.28   10.1   3.9   1   1   0.00043       0.3    9.9   3.9    57   106    12    61     4    78 0.53 UV radiation resistance protein and autophagy-related subunit 14
NUDE_C               PF04880.8    166 sp|Q7CLC9|ZAPB_YERPE -             79      0.29   11.4   7.9   1   1   0.00067      0.48   10.7   7.9     2    54     6    57     5    76 0.69 NUDE protein, C-terminal conserved region
V_ATPase_I           PF01496.14   759 sp|Q7CLC9|ZAPB_YERPE -             79      0.53    8.0   4.1   1   1   0.00084      0.59    7.9   4.1    66   108    24    66     3    78 0.44 V-type ATPase 116kDa subunit family
bZIP_2               PF07716.10    54 sp|Q7CLC9|ZAPB_YERPE -             79       3.2    7.6  15.3   1   2   0.00029       0.2   11.4   2.6    30    49    23    42    20    45 0.92 Basic region leucine zipper
DUF1379              PF07126.7    154 sp|Q7CHK5|ZAPC_YERPE -            183   9.5e-57  190.6   0.1   2   2   6.4e-61   9.5e-57  190.6   0.1     1   150    21   171    21   176 0.97 Protein of unknown function (DUF1379)
DUF1342              PF07072.6    211 sp|Q8ZBH9|ZAPD_YERPE -            250   1.3e-75  253.6   1.5   1   1     1e-79   1.5e-75  253.4   1.5     1   211    22   228    22   228 0.99 Protein of unknown function (DUF1342)
ZipA_C               PF04354.8    131 sp|P58492|ZIPA_YERPE -            328   1.1e-52  176.9   0.1   1   1   9.7e-57   1.4e-52  176.5   0.1     2   131   189   318   188   318 0.99 ZipA, C-terminal FtsZ-binding domain
Cation_efflux        PF01545.16   285 sp|Q8ZGY6|ZITB_YERPE -            312   2.7e-79  266.2  10.2   1   1   1.6e-82   3.3e-79  265.9  10.2     1   282    16   288    16   290 0.97 Cation efflux family
OPT                  PF03169.10   624 sp|Q8ZGY6|ZITB_YERPE -            312   0.00055   18.4   2.5   2   2   3.1e-07   0.00067   18.2   0.0     8    52   155   204   149   230 0.83 OPT oligopeptide transporter protein
DAP10                PF07213.6     79 sp|Q8ZGY6|ZITB_YERPE -            312     0.072   12.8   0.7   1   1   7.6e-05      0.16   11.7   0.0     4    53    52   101    49   113 0.81 DAP10 membrane protein
NADH-u_ox-rdase      PF10785.4     87 sp|Q8ZGY6|ZITB_YERPE -            312      0.11   12.7   0.5   1   1   0.00014       0.3   11.3   0.2    10    74    68   134    64   137 0.72 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
DUF1129              PF06570.6    206 sp|Q8ZGY6|ZITB_YERPE -            312      0.59    9.4   8.5   2   2   9.4e-05       0.2   10.9   4.2    86   186    92   192    83   198 0.94 Protein of unknown function (DUF1129)
DUF2142              PF09913.4    389 sp|Q8ZGY6|ZITB_YERPE -            312       1.4    7.5  11.7   2   2   8.9e-05      0.19   10.3   7.4   175   300    54   178    49   197 0.68 Predicted membrane protein (DUF2142)
CorA                 PF01544.13   292 sp|Q8ZE46|ZNTB_YERPE -            327   2.4e-64  217.1   0.0   1   1   1.9e-68   2.8e-64  216.9   0.0     3   292    39   323    37   323 0.98 CorA-like Mg2+ transporter protein
TroA                 PF01297.12   256 sp|Q8ZEU2|ZNUA_YERPE -            318   5.3e-58  196.2   0.0   1   1   4.1e-62   6.1e-58  196.0   0.0     1   255    30   316    30   317 0.86 Periplasmic solute binding protein family
ABC_tran             PF00005.22   137 sp|Q7CIC2|ZNUC_YERPE -            253   2.9e-28   98.8   0.0   1   1   6.3e-31   4.7e-28   98.2   0.0     1   137    21   150    21   150 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|Q7CIC2|ZNUC_YERPE -            253   5.3e-10   39.7   0.0   1   2   2.7e-05      0.02   14.8   0.0     4    22    36    54    33    75 0.85 AAA domain
AAA_21               PF13304.1    303 sp|Q7CIC2|ZNUC_YERPE -            253   5.3e-10   39.7   0.0   2   2   8.8e-08   6.5e-05   23.0   0.0   233   302   118   185   111   187 0.93 AAA domain
MutS_V               PF00488.16   235 sp|Q7CIC2|ZNUC_YERPE -            253   0.00017   21.0   0.0   1   2   3.3e-05     0.025   14.0   0.0    30    63    18    51     9    75 0.84 MutS domain V
AAA_25               PF13481.1    194 sp|Q7CIC2|ZNUC_YERPE -            253   0.00064   19.1   0.1   1   2   0.00086      0.64    9.3   0.1    30    50    28    48     7    54 0.86 AAA domain
AAA_29               PF13555.1     62 sp|Q7CIC2|ZNUC_YERPE -            253   0.00077   18.9   0.1   1   1   2.1e-06    0.0015   17.9   0.1    23    40    31    48    20    61 0.77 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|Q7CIC2|ZNUC_YERPE -            253    0.0029   16.8   0.2   1   2    0.0011      0.83    8.8   0.0    26    44    33    51    19    65 0.83 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|Q7CIC2|ZNUC_YERPE -            253    0.0033   16.6   0.0   1   1   8.6e-06    0.0064   15.7   0.0    19    56    14    52     5    74 0.85 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|Q7CIC2|ZNUC_YERPE -            253    0.0064   16.6   0.8   1   1   0.00013     0.099   12.7   0.8     5   107    32   163    28   192 0.53 AAA domain
SbcCD_C              PF13558.1     90 sp|Q7CIC2|ZNUC_YERPE -            253    0.0072   16.2   0.0   1   1   0.00019      0.14   12.0   0.0    26    89   115   165   102   166 0.73 Putative exonuclease SbcCD, C subunit
AAA_16               PF13191.1    185 sp|Q7CIC2|ZNUC_YERPE -            253     0.012   15.5   3.3   1   1   9.9e-05     0.074   13.0   3.3    22    71    29    75    18   178 0.52 AAA ATPase domain
UPF0079              PF02367.12   123 sp|Q7CIC2|ZNUC_YERPE -            253     0.017   14.7   0.0   1   1   4.1e-05     0.031   13.9   0.0     9    35    25    51    18    67 0.87 Uncharacterised P-loop hydrolase UPF0079
Mg_chelatase         PF01078.16   207 sp|Q7CIC2|ZNUC_YERPE -            253     0.031   13.4   0.0   1   1   8.9e-05     0.066   12.3   0.0    23    50    32    59    12    66 0.84 Magnesium chelatase, subunit ChlI
ABC_ATPase           PF09818.4    448 sp|Q7CIC2|ZNUC_YERPE -            253     0.034   12.7   0.2   2   2    0.0012      0.92    8.0   0.0   375   416   159   200   120   215 0.90 Predicted ATPase of the ABC class
AAA_33               PF13671.1    143 sp|Q7CIC2|ZNUC_YERPE -            253     0.052   13.4   0.0   1   1   0.00011     0.079   12.8   0.0     3    36    35    71    33   235 0.85 AAA domain
AAA_19               PF13245.1     76 sp|Q7CIC2|ZNUC_YERPE -            253     0.072   12.8   0.1   1   1   0.00027       0.2   11.4   0.1     8    35    29    55    23    78 0.77 Part of AAA domain
AAA_23               PF13476.1    202 sp|Q7CIC2|ZNUC_YERPE -            253     0.077   13.3   0.0   1   1   0.00016      0.12   12.6   0.0    20    36    32    48    15    53 0.77 AAA domain
Rad17                PF03215.10   519 sp|Q7CIC2|ZNUC_YERPE -            253      0.14   10.7   0.0   1   1   0.00031      0.23   10.1   0.0    35    65    21    51    13    58 0.88 Rad17 cell cycle checkpoint protein
AAA_PrkA             PF08298.6    358 sp|Q7CIC2|ZNUC_YERPE -            253       0.2   10.3   0.2   1   1    0.0004       0.3    9.7   0.2    89   108    32    51    26    58 0.89 PrkA AAA domain
